WO2006104761A3 - Unique sequence hybridization probes (usp) - Google Patents

Unique sequence hybridization probes (usp) Download PDF

Info

Publication number
WO2006104761A3
WO2006104761A3 PCT/US2006/010195 US2006010195W WO2006104761A3 WO 2006104761 A3 WO2006104761 A3 WO 2006104761A3 US 2006010195 W US2006010195 W US 2006010195W WO 2006104761 A3 WO2006104761 A3 WO 2006104761A3
Authority
WO
WIPO (PCT)
Prior art keywords
unique sequence
usp
hybridization probes
sequence hybridization
methods
Prior art date
Application number
PCT/US2006/010195
Other languages
French (fr)
Other versions
WO2006104761A2 (en
Inventor
Lisa Davis
Lei Tang
Original Assignee
Exagen Diagnostics Inc
Lisa Davis
Lei Tang
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Exagen Diagnostics Inc, Lisa Davis, Lei Tang filed Critical Exagen Diagnostics Inc
Priority to JP2008504145A priority Critical patent/JP2008534011A/en
Priority to EP06739112A priority patent/EP1863934B1/en
Priority to DE602006010187T priority patent/DE602006010187D1/en
Priority to AT06739112T priority patent/ATE447628T1/en
Publication of WO2006104761A2 publication Critical patent/WO2006104761A2/en
Publication of WO2006104761A3 publication Critical patent/WO2006104761A3/en

Links

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6811—Selection methods for production or design of target specific oligonucleotides or binding molecules

Landscapes

  • Chemical & Material Sciences (AREA)
  • Organic Chemistry (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Microbiology (AREA)
  • Immunology (AREA)
  • Physics & Mathematics (AREA)
  • Molecular Biology (AREA)
  • Biotechnology (AREA)
  • Biophysics (AREA)
  • Analytical Chemistry (AREA)
  • Biochemistry (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)

Abstract

The present invention provides unique sequence probes, methods for generating them, and methods for using unique sequence probes in hybridization assays.
PCT/US2006/010195 2005-03-29 2006-03-20 Unique sequence hybridization probes (usp) WO2006104761A2 (en)

Priority Applications (4)

Application Number Priority Date Filing Date Title
JP2008504145A JP2008534011A (en) 2005-03-29 2006-03-20 Unique sequence hybridization probe (USP)
EP06739112A EP1863934B1 (en) 2005-03-29 2006-03-20 Unique sequence hybridization probes (usp)
DE602006010187T DE602006010187D1 (en) 2005-03-29 2006-03-20 SINGLE SEQUENCE HYBRIDIZATION PROBES
AT06739112T ATE447628T1 (en) 2005-03-29 2006-03-20 SINGLE SEQUENCE HYBRIDIZATION PROBE

Applications Claiming Priority (4)

Application Number Priority Date Filing Date Title
US66600005P 2005-03-29 2005-03-29
US60/666,000 2005-03-29
US11/112,926 2005-04-22
US11/112,926 US20060223075A1 (en) 2005-03-29 2005-04-22 Unique sequence hybridization probes (USP)

Publications (2)

Publication Number Publication Date
WO2006104761A2 WO2006104761A2 (en) 2006-10-05
WO2006104761A3 true WO2006104761A3 (en) 2007-04-26

Family

ID=36926400

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/US2006/010195 WO2006104761A2 (en) 2005-03-29 2006-03-20 Unique sequence hybridization probes (usp)

Country Status (6)

Country Link
US (1) US20060223075A1 (en)
EP (1) EP1863934B1 (en)
JP (1) JP2008534011A (en)
AT (1) ATE447628T1 (en)
DE (1) DE602006010187D1 (en)
WO (1) WO2006104761A2 (en)

Families Citing this family (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN101595231A (en) * 2006-12-29 2009-12-02 霍尼韦尔国际公司 The reaction buffer that is used for microarray
EP2694677A2 (en) * 2011-04-04 2014-02-12 Netherland Cancer Institute Methods and compositions for predicting resistance to anticancer treatment with protein kinase inhibitors
EP2694678A2 (en) * 2011-04-04 2014-02-12 Netherland Cancer Institute Methods and compositions for predicting resistance to anticancer treatment
EP2744916A4 (en) 2011-07-13 2015-06-17 Primeradx Inc Multimodal methods for simultaneous detection and quantification of multiple nucleic acids in a sample
US10030268B2 (en) 2014-11-11 2018-07-24 Abbott Molecular Inc. Hybridization probes and methods

Citations (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2001088089A2 (en) * 2000-05-16 2001-11-22 Children's Mercy Hospital Single copy genomic hybridization probes and method of generating same

Family Cites Families (11)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
KR100236506B1 (en) * 1990-11-29 2000-01-15 퍼킨-엘머시터스인스트루먼츠 Apparatus for polymerase chain reaction
US5710028A (en) * 1992-07-02 1998-01-20 Eyal; Nurit Method of quick screening and identification of specific DNA sequences by single nucleotide primer extension and kits therefor
US5750340A (en) * 1995-04-07 1998-05-12 University Of New Mexico In situ hybridization solution and process
US6022689A (en) * 1995-04-07 2000-02-08 University Of New Mexico Situ hybridization slide processes
US5612473A (en) * 1996-01-16 1997-03-18 Gull Laboratories Methods, kits and solutions for preparing sample material for nucleic acid amplification
US6358682B1 (en) * 1998-01-26 2002-03-19 Ventana Medical Systems, Inc. Method and kit for the prognostication of breast cancer
WO2000009758A1 (en) * 1998-08-14 2000-02-24 The Regents Of The University Of California NOVEL AMPLICON IN THE 20q13 REGION OF HUMAN CHROMOSOME 20 AND USES THEREOF
US6828097B1 (en) * 2000-05-16 2004-12-07 The Childrens Mercy Hospital Single copy genomic hybridization probes and method of generating same
US7171311B2 (en) * 2001-06-18 2007-01-30 Rosetta Inpharmatics Llc Methods of assigning treatment to breast cancer patients
WO2005042786A2 (en) * 2003-11-03 2005-05-12 Exagen Diagnostics Compositions and methods for glioma classification
JP2007530075A (en) * 2004-04-23 2007-11-01 エグザジェン ダイアグノスティクス インコーポレイテッド Compositions and methods for prognosis of breast cancer

Patent Citations (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2001088089A2 (en) * 2000-05-16 2001-11-22 Children's Mercy Hospital Single copy genomic hybridization probes and method of generating same

Non-Patent Citations (2)

* Cited by examiner, † Cited by third party
Title
KNOLL JOAN H M ET AL: "Sequence-based, in situ detection of chromosomal abnormalities at high resolution.", AMERICAN JOURNAL OF MEDICAL GENETICS, vol. 121A, no. 3, 1 September 2003 (2003-09-01), pages 245 - 257, XP002397525, ISSN: 0148-7299 *
ROGAN PETER K ET AL: "Sequence-based design of single-copy genomic DNA probes for fluorescence in situ hybridization", GENOME RESEARCH, vol. 11, no. 6, June 2001 (2001-06-01), pages 1086 - 1094, XP002397526, ISSN: 1088-9051 *

Also Published As

Publication number Publication date
US20060223075A1 (en) 2006-10-05
JP2008534011A (en) 2008-08-28
ATE447628T1 (en) 2009-11-15
WO2006104761A2 (en) 2006-10-05
EP1863934A2 (en) 2007-12-12
DE602006010187D1 (en) 2009-12-17
EP1863934B1 (en) 2009-11-04

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