WO2005061523A1 - Glycosaminoglycan (gag) mimetics - Google Patents
Glycosaminoglycan (gag) mimetics Download PDFInfo
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- WO2005061523A1 WO2005061523A1 PCT/AU2004/001800 AU2004001800W WO2005061523A1 WO 2005061523 A1 WO2005061523 A1 WO 2005061523A1 AU 2004001800 W AU2004001800 W AU 2004001800W WO 2005061523 A1 WO2005061523 A1 WO 2005061523A1
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Definitions
- the invention that is the subject of this application lies in the area of compounds that mimic the structure of certain carbohydrates. More particularly, the invention lies in the area of glycosaminoglycan (GAG) mimetics. Specifically, the invention relates to compounds comprising at least one charged group that are designed to mimic the structure of GAGs. The invention also relates to methods for the preparation of the compounds, compositions comprising the compounds, and use of the compounds and compositions thereof for the antiangiogenic, antimetastatic, anti-inflammatory, anticoagulant, antithiOmbotic, and/or antimicrobial treatment of a mammalian subject.
- GAG glycosaminoglycan
- the invention further relates to the use ofthe compounds and compositions thereof in the treatment of a mammalian subject having a condition amenable to treatment with such agents.
- GAGs Glycosaminoglycans
- ECM extracellular matrix
- HS-GAGs play key roles in cell growth and development, angiogenesis, coagulation, tumour metastasis, cell adhesion, activation of growth factors, binding of cytokines and chemokines, and infection by bacteria and viruses [4-6].
- angiogenesis coagulation
- tumour metastasis cell adhesion
- activation of growth factors binding of cytokines and chemokines
- infection by bacteria and viruses [4-6].
- GAG mimetics molecules that mimic the structure of certain GAGs — which molecules are referred to as “GAG mimetics” — can bind to GAG-binding proteins and modulate their biological activity: e.g., the activation of AT-III by various pentasaccharides [7,8], or the activation of fibroblast growth factors (FGFs) by sucrose octasulfate [9].
- FGFs fibroblast growth factors
- anticancer agents that have been developed to target HS-binding angiogenic growth factors include polysulfonated compounds [10], suramin and the related suradistas [11], and sulfated oligosaccharides [12,13].
- the present invention relates to novel, small molecule GAG mimetics that bind to GAG-binding proteins and modulate their functions.
- the compounds incorporate at least one negatively charged group (preferably a sulfo group) to interact with the positively charged residues in the GAG-binding site of the target proteins, and also contain one or more substituents to form interactions with other protein residues in and around the above-mentioned binding site.
- Important and distinguishing features ofthe compounds described herein are that they have fewer sulfo groups and are of lower molecular weight than previously described polysulfated GAG mimetics such as the sulfated oligosaccharides [12,13]. Another important feature is that their structures are based on cyclic scaffolds (e.g., a monosaccharide) with sulfo groups and other substituents placed in specific, pre-defined orientations about the ring, thus differing significantly from the simple, randomly charged GAG mimetics described by Kisilevsky [14].
- SPR surface plasmon resonance
- a selection of compounds are shown to inhibit the HS-mediated infection of cells and cell-to-cell spread by herpes simplex virus.
- One aspect of the present invention is the utilisation of the Ugi reaction [15,16] to provide a diverse array of GAG mimetics. The capacity for variation in the manner in which the individual charged structures are connected to one another or to other functional groups as well as the scope of application to mimic the diverse structural variation of GAGs is demonstrated.
- the functionalisation of the cyclic scaffolds is not limited to the Ugi reaction. For example, the use of many other reactions such as alkylation, acylation and cycloaddition is demonstrated.
- n is an integer of from 0 to 2;
- Z is N, N(O), O. S, S(O), S(O) 2 , P, P(O), P(O) 2 , Si, Si(O), or Si(O) 2 ;
- each X is independently C, C(O), N, N(O), O, S, S(O), S(O) 2 , P.
- each of R ⁇ to R 6 is independently a bond or is selected from the group consisting of: hydrogen; halogen; straight chain, cyclic, branched, substituted, heterocyclic, heteroatom substituted or unsubstituted alkyl, alkenyl, alkynyl, aryl, or heteroaryl; phosphoryl groups such as phosphate, thiophosphate -O-P(S)(OH) 2 ; phosphate esters -O-P(O)(OR) 2 ; thiophosphate esters -O-P(OR) 2 ; phosphonate -O-P(O)OHR; thiophosphonate -O-P(S)OHR; substituted phosphonate -O-P(O)OR 1 R 2 ; substituted thiophosphonate -O-P(S)OR 1 R 2 ; -O-
- a pharmaceutical or veterinary composition for the prevention or treatment in a mammalian subject of a disorder resulting from angiogenesis, metastasis, inflammation, coagulation, thrombosis, and/or microbial infection, which composition comprises at least one compound according to the first embodiment together with a pharmaceutically or veterinarially acceptable carrier or diluent for said at least one compound.
- a pharmaceutically or veterinarially acceptable carrier or diluent for said at least one compound.
- a compound according to the first embodiment in the manufacture of a medicament for the prevention or treatment in a mammalian subject of a disorder resulting from angiogenesis, metastasis, inflammation, coagulation, thrombosis, and/or microbial infection.
- a method for the prevention or treatment in a mammalian subject of a disorder resulting from angiogenesis, metastasis, inflammation, coagulation, thrombosis, and/or microbial infection comprises administering to the subject an effective amount of at least one compound according to the first embodiment, or a composition comprising said at least one compound.
- processes for synthesising the compounds according to the first embodimrent as defined above are provided.
- alkyl, aryl and other substituent groups are used in accordance with their usual meaning in the art. For example, alkyl and aryl groups would normally have from 1 to 10 carbon atoms.
- two ofthe groups Ri to R 5 may be connected to each other to form a bicyclic strucure; or the cyclic structure of formula I may contain a double bond, i.e., two contiguous XRi to XR 5 groups may be bonds.
- Preferred compounds ofthe invention have the general structures of formulae III— VI, as defined in Tables 1-4 below. In order that the invention may be more readily understood and put into practice, one or more preferred embodiments thereof will now be described, by way of example only.
- GAG glycosaminoglycan HS heparan sulfate FGF fibroblast growth factor aFGF acidic fibroblast growth factor (or FGF-1) bFGF basic fibroblast growth factor (or FGF-2) NEGF vascular endothelial growth factor SPR surface plasmon resonance HSN herpes simplex virus
- FGF-1 FGF acidic fibroblast growth factor
- FGF-2 FGF basic fibroblast growth factor
- NEGF vascular endothelial growth factor SPR surface plasmon resonance HSN herpes simplex virus
- GAG mimetics of the invention can be synthesised using a number of different routes, including the Ugi reaction, and generally incorporating sulfonation in the process.
- Preferred compounds according to the first embodiment of the invention as defined above include those embraced by generic structures I and II and those included in Tables 1-4 below.
- the compounds according to the invention have utility in the prevention or treatment in mammalian subjects of a disorder resulting from angiogenesis, metastasis, inflammation, microbial infection, coagulation or thrombosis.
- the compounds have particular utility in the treatment of the foregoing disorders in humans.
- the compounds are typically administered as a component of a pharmaceutical composition as described in the following paragraphs.
- Pharmaceutical compositions for oral administration can be in tablet, capsule, powder or liquid form.
- a tablet can include a solid carrier such as gelatine or an adjuvant or an inert diluent.
- Liquid pharmaceutical compositions generally include a liquid carrier such as water, petroleum, animal or vegetable oils, a mineral oil or a synthetic oil.
- Physiological saline solution or glycols such as ethylene glycol, propylene glycol or polyethylene glycol may be included. Such compositions and preparations will generally contain at least 0.1 wt% of the compound.
- Parenteral administration includes administration by the following routes: intravenously, cutaneously or subcutaneously, nasally, intramuscularly, intraocularly, transepithelially, intraperitoneally and topically. Topical administration includes dermal, ocular, rectal, nasal, as well as administration by inhalation or by aerosol means.
- compositions according to the invention can further include a pharmaceutically or veterinarially acceptable excipient, buffer, stabiliser, isotonicising agent, preservative or antioxidant or any other material known to those of skill in the art.
- compositions typically include such substances so as to maintain the composition at a close to physiological pH or at least within a range of about pH 5.0 to about pH 8.0.
- compositions according to the invention can also include active ingredients in addition to the at least one compound. Such ingredients will be principally chosen for their efficacy as antiangiogenic, antimetastatic, anti-inflammatory, anticoagulant, antithrombotic, antimicrobial agents but can be chosen for their efficacy against any associated condition.
- compositions for administration to a human subject will include between about 0.01 and 100 mg of the compound per kg of body weight and more preferably between about 0.1 and 10 mg/kg of body weight.
- the compounds can be included in compositions as pharmaceutically or veterinarially acceptable derivatives thereof.
- derivatives of the compounds includes salts, coordination complexes with metal irons such as Mn 2+ and Zn 2+ , esters such as in vivo hydrolysable esters, free acids or bases, hydrates, or prodrugs.
- Compounds having acidic groups such as phosphates or sulfates can form salts with alkaline or alkaline earth metals such as Na, K, Mg and Ca, and with organic amines such as triethylamine and Tris (2-hydroxyethyl) amine.
- Salts can also be formed between compounds with basic groups, such as amines, with inorganic acids such as hydrochloric acid, phosphoric acid or sulfuric acid, or organic acids such as acetic acid, citric acid, benzoic acid, fumaric acid, or tartaric acid.
- inorganic acids such as hydrochloric acid, phosphoric acid or sulfuric acid
- organic acids such as acetic acid, citric acid, benzoic acid, fumaric acid, or tartaric acid.
- Compounds having both acidic and basic groups can form internal salts.
- Esters can be formed between hydroxyl or carboxylic acid groups present in the compound and an appropriate carboxylic acid or alcohol reaction partner, using techniques that will be well known to those of skill in the art.
- Prodrug derivatives ofthe compounds ofthe invention can be transformed in vivo or in vitro into the parent compounds.
- prodrugs are glycolipid derivatives in which one or more lipid moieties are provided as substituents on the moieties, leading to the release of the free form of the compound by cleavage with an enzyme having phospholipase activity.
- Prodrugs of compounds of the invention include the use of protecting groups which may be removed in vivo to release the active compound or serve to inhibit clearance of the drug. Suitable protecting groups will be known to those of skill in the art and include an acetate group.
- compounds according to the invention have utility in the manufacture of a medicament for the prevention or treatment in a mammalian subject of a disorder resulting from angiogenesis, metastasis, inflammation, coagulation, thrombosis and/or microbial infection.
- Processes for the manufacture of such medicaments will be known to those of skill in the art and include the processes used to manufacture the pharmaceutical compositions described above.
- the compounds falling within the scope of the invention have been found to have bind growth factors. In particular, it has been established that the compounds have affinity for aFGF, bFGF and NEGF.
- the compounds thus have utility as antiangiogenic, antimetastatic and/or anti-inflammatory agents in the treatment of mammalian subjects including humans.
- the uses of the compounds include the treatment of angiogenesis-dependent diseases such as angiogenesis associated with the growth of solid tumours, and proliferative retinopathies, as well as the treatment of inflammatory diseases and conditions such as rheumatoid arthritis.
- the compounds may also activate the growth factors and could thus be used in cardiovascular treatments.
- the compounds of the invention additionally have utility as anticoagulant or antithrombotic agents.
- the compounds can therefore be used for both the prophylaxis and treatment of many thrombotic and cardiovascular diseases, the most notable of these being deep venous thrombosis, pulmonary embolism, thrombotic stroke, peripheral arterial thrombosis, unstable angina and myocardial infarction.
- compositions of the charged aminoacid compounds can be delivered orally, the compounds are an attractive alternative to warfarin, a widely used oral anticoagulant with severe side effects.
- the compounds of the invention additonally have been found to inhibit viral infection and thus have utility as antiviral agents in the treatment or prevention of many viral infections.
- the compounds of the invention are particularly suited for the treatment or prevention of infection resulting from pathogens which utilise HS as an attachment/entry receptor [6], for example, HSN, HIN, Dengue virus, Yellow fever virus, Cytomegalovirus and Hepatitis C virus.
- the compounds ofthe invention are also suited for the treatment or prevention of infection resulting from non-viral microbial pathogens which utilise HS as an attachment/entry, for example, Plasmodium (malaria). Most notable is the inhibition by the compounds ofthe invention ofthe cell-to-cell spread of HSN-1 and HSN-2. Having broadly described the invention, non-limiting examples ofthe compounds, their synthesis, and their biological activities, will now be given with reference to the accompanying Tables which will be briefly described in the following section of this specification.
- the pure fractions were evaporated and co-evaporated (H 2 O) and then lyophilised (H 2 O) to yield the sulfated product.
- H 2 O lyophilised
- the product was passed through an ion- exchange resin column (AG ® -50W-X8, Na + form, 1x4 cm, deionized H O, 15 mL) in order to transfer the product uniformly into the sodium salt form.
- the solution collected was evaporated and lyophilised to give the final product as a colourless glass or white power.
- Size exclusion chromatography Size exclusion chromatography (SEC) was performed over Bio-Gel P-2 in a 5 x 100 cm column with a flow rate of 2.8 mL/min of 0.1 M NH 4 HCO 3 , collecting 2.8 min (7.8 mL) fractions. Fractions were analysed for carbohydrate content by TLC (charring) and/or for poly- charged species by the dimethyl methylene blue test, and then for purity by capillary electrophoresis (CE) and those deemed to be free of salt were pooled and lyophilised.
- TLC charring
- CE capillary electrophoresis
- Dimethyl methylene blue Test Dimethyl methylene blue (DMB) reagent was prepared by dissolving 16 mg of DMB in 1 L of deionized water containing 3.04 g of glycine, 2.37 g of NaCI. 0.1 M HC1 (95 ml) was added to adjust the pH to 3.0. The stock solution was stored in a brown coloured bottle at r.t. (the solution was stable for at least 3 months under such conditions).
- a 96-well microtitre plate was loaded with 10 ⁇ L of fraction solution per well. 55 ⁇ L of DMB stock solution was added into each used well. An instant colour change from blue to pink indicated the presence of polycharged species, i.e., sulfated product fractions.
- General procedure for NIS glycosylations Glycosyl acceptor (1 eq), thioglycoside donor (1.1 eq), 500 mg of freshly activated powdered 3 A molecular sieves and 10 mL of dry DCM were stirred at -20° for 20 min before 1.3 eq of NIS and 1 drop of TfOH were added.
- the mixture was loaded in a miniclave (B ⁇ chi AG, Uster/Switzerland) and stirred under hydrogen atmosphere (50 psi) for 2-10 h. Alternatively, the mixture was bubbled with hydrogen gas for 1 h then stirred at r.t. under 1 atmosphere of hydrogen for 1-5 days. The reaction was monitored by TLC (EtOAc or MeCN-water 10:1). The mixture was filtered and rinsed with MeOH, or EtOH. The filtrate was evaporated and dried under high vacuum, checked by 1H NMR, freeze- dried and used directly for sulfonation.
- Step a Methyl 3,4,6-tri- -acetyl-2-0-benzyl- -O-galactopyranosyl-(l- ⁇ 4)-2,3,6- tri-O-benzyl- ⁇ -O-glucopyranoside.
- Step b Methyl 3,4,6-tri-0-acetyl-a-O-galactopyranosyl-(l ⁇ 4)-fi-O-glucopyranoside.
- Pearlman's catalyst (20 mg) and 20 ⁇ L of acetic acid were added to a solution of 90 mg (106 ⁇ mol) of methyl 3,4,6-tri-0-acetyl-2-0-benzyl-a-O-galactopyranosyl-(l ⁇ 4)-2,3,6- tri-O-benzyl- ⁇ -O-glucopyranoside in 10 mL of MeOH.
- An atmosphere of hydrogen was applied with 3 vacuum purges and the suspension was stirred for 3 days.
- Step c Methyl 2-0-sulfo- -O-galactopyranosyl-(l ⁇ 4)-2,3,6-tri-0-sulfo ⁇ -O-glucopyranoside, tetrasodium salt (PG2038)
- the above disaccharide (32.2 mg, 0.667 mmol), was subjected to the standard sulfonation and deacetylation procedures to give the title compound as a white foam (4.0 mg, 7.8%, 96% purity, CE: 7.18 min).
- Example 2 PG2046 and PG2047 Step a: 2-Azido-3, 4, 6-tri-0-benzoyl-2-deoxy-a-D-glucopyranosyl-(l ⁇ 4)-l, 6-anhydro-2-azido- 2-deoxy-3-0-benzyl- -D-glucopyranose
- Step b 2-Deoxy-2-sulfamido-a-O-glucopyranosyl-(l ⁇ 4)-l, 6-anhydro-2-deoxy-2-sulfamido-3- 0-benzyl- -O-glucopyranose, disodium salt (PG2046)
- Pearlman's catalyst 11 mg
- ammonium formate 300 mg
- the mixture was cooled to r.t., filtered (0.2 ⁇ m) and evaporated.
- the crude amine was purified by SPE (300 mg C18 Waters cartridge, equilibrated with 5:95 MeOH:H 2 O, gradient eluted 5:95 to 100:0 MeOH:H 2 O) to yield 53 mg of the diamine (58%). Without further purification, to the diamine was added DMF (5 mL), SO 3 « Me 3 N (41 mg, 295 ⁇ mol) and NaHCO 3 (40 mg, 475 ⁇ mol). The mixture was heated to 60° for 1 h then cooled to rt and quenched with ice and Na 2 CO 3 (sat. aqueous).
- Step c 2-Deoxy-2-sulfamido-a-O-glucopyranosyl-(l ⁇ 4)-l, 6-anhydro-2-deoxy-2-sulfamido- - O-glucopyranoside, disodium salt
- PG2047 A mixture of 2-deoxy-2-sulfamido-a-O-glucopyranosyl-(l ⁇ 4)-l, 6-anhydro-2-deoxy-2- sulfamido-3-O-benzyl- ⁇ -O-glucopyranoside, disodium salt (12.9 mg, 20.8 ⁇ mol) and Pearlman's catalyst (5 mg) in purified water (2 mL) was subjected to 50 psi H 2 overnight.
- Example 3 PG2039 and PG2037 Step a: Methyl 3,4-di-0-acetyl-2,6-di-0-benzyl-a-O-galactopyranosyl-(l ⁇ 4)-2,3,6- tri-0-benzyl- -O-glucopyranoside Methyl 2,3,6-tri-O-benzyl- ⁇ -O-glucopyranoside (287 mg; 618 ⁇ mol), 302 mg (618 ⁇ mol) of ethyl 3,4-di-0-acetyl-2,6-0-dibenzyl-l-thio-fi-D-galactopyranoside [21] and 700 mg of 3 A molecular sieves were subjected to the general NIS glycosylation procedure using 181 mg (803 ⁇ mol
- Step b Methyl 3,4-di-0-acetyl-a-O-galactopyranosyl-(l ⁇ 4)- -D-glucopyranoside.
- methyl 3,4-di-0-acetyl-2,6-di- 0-benzyl-a-O-galactopyranosyl-(l ⁇ 4)-2,3,6-tri-0-benzyl-fi-O-glucopyranoside 88 mg, 98.8 ⁇ mol
- Step c Methyl 2,6-di-0-sulfo-a-O-galactopyranosyl-(l ⁇ 4)-2,3,6-tri-0-sulfo- -O- glucopyranoside, pentasodium salt (PG2039)
- PG2039 pentasodium salt
- 42 mg (95.4 ⁇ mol) of methyl 3,4-di-0-acetyl-a-O-galactopyranosyl-(l ⁇ 4)- -O-glucopyranoside was converted to the title compound as a white powder (14.8 mg, 18%, CE: 6.12 min).
- Step d Methyl 2,6-di-0-benzyl-3,4-di-0-methyl ⁇ -O-galactopyranosyl-(l ⁇ 4)-2,3,6-tri-0- benzyl- -O-glucopyranoside
- methyl 3,4-di-O- acetyl-2, 6-di-0-benzyl-a-O-galactopyranosyl-(l ⁇ 4)-2, 3, 6-tri-O-benzyl- ⁇ -O-glucopyranoside 72 mg, 80.8 ⁇ mol
- Step e Methyl 3,4-di-0-methyl-a-O-galactopyranosyl-(l ⁇ 4)-fi-O-glucopyranoside
- methyl 2,6-di-0-benzyl-3,4-di-0- methyl-a-O-galactopyranosyl-(l ⁇ 4)-2,3,6-tri-0-benzyl- -O-glucopyranoside (62.1 mg, 75.1 ⁇ mol) was deprotected to give the title compound as colourless gum (28 mg, 97%).
- Stepf Methyl 3, 4-di-0-methyl-2, 6-di-0-sulfo-a-O-galactopyranosyl-(l ⁇ 4)-2, 3, 6-tri-O- sulfo-fi-O-glucopyranoside, pentasodium salt (PG2037) Following the standard sulfonation procedure, methyl 3,4-di-O-methyl-a-O- galactopyranosyl-(l ⁇ 4)- -O-glucopyranoside (28 mg, 72.8 ⁇ mol) gave the title compound (3.2 mg, 4.9%).
- Example 4 PG2053 and PG2042 Methyl 4-0-Allyl-2,3-di-0-sulfo- -L-rhamnoside, disodium salt (PG2053).
- the title compound was obtained from methyl 2,3-O-isopropylidene- -L- rhamnopyranoside [22] via the general alkylation (with allyl bromide) and deprotection procedure followed by the general sulfonation procedure, as a colourless powder.
- CE t m 10.48 min.
- Example 5 PG2024 Methyl 4-0-Benzyl-2,3-di-0-sulfo- -L-rhamnoside, disodium salt (PG2024)
- the title compound was obtained from methyl 2,3-O-isopropylidene- -L- rhamnopyranoside via the general alkylation (with benzyl bromide) and deprotection procedure followed by the general sulfonation procedure, as a colourless powder.
- CE t m 10.82 min.
- Example 6 PG2054 Step a: Methyl 4-O-benzoyl-a- -rhamnoside A solution of methyl 2,3- -isopropylidene- - -rhamnopyranoside (200 mg, 920 ⁇ mol), benzoyl chloride (193 mg, 1.38 mmol) and Et 3 N (364 ⁇ L, 2.76 mmol) in DCM (10 mL) was stirred overnight. The resulting suspension (Et 3 N » HCl precipitates) was diluted with DCM (50 mL) and washed with NaHCO 3 (sat. aqueous), water then brine, dried (MgSO 4 ) and evaporated.
- Step b 3-0-Benzyl-4,6-di-0-sulfo-l,2-dihydro-O-glucal, Disodium salt (PG2041). 4,6-0-Benzylidene-l,2-dihydro-D-glucal was subjected to the alkylation (benzyl bromide), de-protection and sulfonation general procedures to yield the title compound as a colourless powder.
- CE t m 15.40 min.
- Step a 1, 6-Anhydro-3-0-methyl- -O-glucopyranose.
- -Toluenesulfonyl chloride (790 mg, 4.14 mmol) was added to a cooled (0°) suspension of 3-O-methyl-D-glucopyranose (804 mg, 4.14 mmol) in pyridine (10 mL) and the reaction mixture stirred (0° ⁇ r.t, 1.5 h).
- Ac 2 O (1.5 mL, 15 mmol) and N,N-dimethylaminopyrdine (50 mg) were then introduced and stirring continued (r.t., 4 h).
- the residual oil was subjected to flash chromatography (20-50% EtOAc/hexanes) to yield an inseparable mixture of 2,4-di-0-acetyl-l,6-anhydro-3-0-methyl- -D-glucopyranose (a) and l,2,4-tri-0-acetyl-3-0-methyl-6-0-tosyl- -O-glucopyranose (b) (in a ratio of 3:1) as a pale yellow oil (466 mg). The ratio was determined by integration of the H-l and 3-OMe signals observed in the 1H ⁇ MR spectrum.
- Example 9 PG2012 and PG2013 Step a: ' N-benzyl- ⁇ N-(cyclohexylacetamido)-l, 2, 3, 4-tetra-O-acetyl- -glucuronamide
- D-glucuronic acid (0.950 g, 4.89 mmol)
- solutions of each of the following three reagents benzylamine (2 M in MeO ⁇ , 2.45 mL, 4.89 mmol), formaldehyde (2 M in MeO ⁇ , 2.45 mL, 4.89 mmol) and cyclohexylisocyanide (1 M in MeO ⁇ , 4.89 mL, 4.89 mmol) were loaded into a reaction vessel and the mixture stirred at r.t.
- Step b Y ⁇ -benzyl- ⁇ -(cyclohexylacetamido)-l, 2, 3, 4-teti"a-0-sulfo-a ⁇ D-glucuronamide, tetrasodium salt (PG2012) and ⁇ -benzyl- ⁇ N-(cyclohexylacetamido)-l,2,3-tri-0-sulfo-a-D- glucuronamide, trisodium salt (PG2013) Following the general procedure for deacetylation, the above tetraacete (0.441 g, 0.747 mmol) was deacetylated to give ⁇ N-benzyl- ⁇ N-(cyclohexylacetamido)-D-glucuronamide as pale- yellow glass (0.316 g, 100%).
- the polar part was purified by LH20 column (x2) and ion exchange column to give tetrasulfate PG2012 as an off-white powder after lyophilisation (7.6 mg, 1.5%).
- Example 10 PG2064 Step a: 2-(N-acetyl- ' N-cyclohexyl)amino- ' N-(methyl 2,3,4-tri-0-benzyl-6-deoxy-a-D- mannopyranos-6-yl)acetamide
- acetic acid (2 M in MeOH, 60 ⁇ L, 119 ⁇ mol)
- cyclohexylamine (2 M in MeOH, 60 ⁇ L, 119 ⁇ mol
- formaldehyde 2 M in MeOH, 60 ⁇ L, 119 ⁇ mol
- methyl 2,3,4-tri-0-benzyl-6-deoxy-6-isocyano- -D-mannopyranoside 0.721 M in CHC1 3 , 150 ⁇ L, 108 ⁇ mol
- Step b 2-(N-acetyl- ⁇ N-cyclohexyl)amino- ' N-( methyl 6-deoxy -2,3,4-tri-O-sulfo-a-D- mannopyranos ⁇ 6-yl)acetamide, trisodium salt (PG2064)
- PG2064 2-(N-acetyl- ⁇ N-cyclohexyl)amino- ' N-( methyl 6-deoxy -2,3,4-tri-O-sulfo-a-D- mannopyranos ⁇ 6-yl)acetamide, trisodium salt
- Step a Following the general procedure for the Ugi reaction, monomethyl succinate (15.7 mg, 0.119 mmol) and a solution of each ofthe following three reagents: ethylamine (2 M in MeOH, 60 ⁇ L, 119 ⁇ mol), formaldehyde (2 M in MeOH, 60 ⁇ L, 119 ⁇ mol) and methyl 2,3,4-tri-O- benzyl-6-deoxy-6-isocyano-a-D-mannopyranoside (0.721 M in CHCI 3 , 150 ⁇ L, 108 ⁇ mol) was loaded into a 2 mL sample vial and the mixture stirred at r.t. for 19 h.
- ethylamine (2 M in MeOH, 60 ⁇ L, 119 ⁇ mol
- formaldehyde 2 M in MeOH, 60 ⁇ L, 119 ⁇ mol
- 13 C (100 MHz, CDCI 3 , ⁇ 77.0): major rotamer, 173.32, 171.73, 168.94, 138.20, 138.17, 138.09, 128.22, 128.18, 128.10, 127.76, 127.63, 127.49, 127.46, 98.94, 79.97, 75.38, 75.01, 74.84, 73.01, 72.01, 70.10, 54.63, 51.63, 49.84, 43.59, 39.63, 28.99, 27.24, 13.45.
- Step b (PG2068) Following the general procedure for deprotection of benzyl ethers, a mixture of the above tribenzyl ether (46.8 mg, 0.0706 mmol), 20% palladium on activated charcoal (30 mg) in MeOH (3 mL) was stirred under hydrogen atmosphere at 50 psi for 2 h.
- Step a 3-Chlorophenylacetic acid (223 mg, 1.307 mmol) was dissolved in MeCN (3 mL). Ammonia solution (28%, 0.26 mL, 3.8 mmol) was added. The mixture was swirled for a while and evaporated in vacuo. The residue was suspended in MeCN (3 mL), filtered and the white solid was washed with MeCN and freeze-dried to afford ammonium 3-chlorophenylacetate (0.195 g, 80%).
- 13 C (100 MHz, CDC1 3 , ⁇ 77.0): 169.67, 166.81, 138.27, 138.11, 137.70, 135.16, 134.31, 129.82, 129.40, 128.34, 128.31, 128.01, 127.85, 127.78, 127.70, 127.68, 127.60, 127.53, 127.46, 98.90, 79.96, 75.08, 75.04, 74.71, 73.58, 72.73, 72.19, 72.13, 69.78, 68.49, 63.17, 40.25, 39.27.
- Step b (PG2075) Following the general procedure for deprotection of benzyl ethers, a mixture of the above tetrabenzyl ether (34.8 mg, 0.0439 mmol), 20% palladium on activated charcoal (26 mg) in MeOH (2 mL) was stirred under hydrogen atmosphere at 50 psi for 2 h. General work-up gave the tetrol intermediate as a colourless gum. Following the general procedure for sulfonation, the above tetrol was sulfonated . The residue was purified via SEC (Bio-Gel P-2).
- Example 13 PG2014 Step a Following the general procedure for the Ugi reaction, 2-(benzyl3,4,6-tri-0-benzyl- -D- mannopyranoside-2-yl) acetic acid (50 mg, 0.0835 mmol) and a solution of each following three reagents: benzylamine (2 M in MeOH, 41.8 ⁇ L, 0.0835 mmol), formaldehyde (2 M in MeOH, 41.8 ⁇ L, 0.0835 mmol) and 2-isocyanoethyl 2,3,4,6-tetra-O-benzyl- -D- mannopyranoside (0.415 M in MeOH, 201.4 ⁇ L, 0.0835 mmol) was loaded into a 2 mL sample vial and the mixture stirred at r.t.
- Step b (PG2014). Following the general procedure for the deprotection of benzyl ethers, a mixture of the above octabenzyl ether (35 mg, 0.0267 mmol) and 20% palladium on activated charcoal (10 mg) in EtOH (4 mL) was stirred under hydrogen atmosphere at 50 psi for 2 h. General work- up gave the octol intermediate as a colourless gum. Following the general procedure for sulfonation, the above octol was sulfonated (sulfur trioxide trimethylamine complex, 60 °C, 19 h). The residue was purified via SEC (Bio-Gel P-2).
- Example 14 PG2016 Step a Following the general procedure for the Ugi reaction, tr r ⁇ -l,4-diaminocyclohexane (6.3 mg, 0.055 mmol) and a solution of each following three reagents: 2 -(methyl 2,3,4-tri-O- benzyl -O-mannopyranoside-6-yl)acetic acid (0.91 M in MeOH, 121 ⁇ L, 0.11 mmol), formaldehyde (2 M in MeOH, 55 ⁇ L, 0.11 mmol) and cyclohexylisocyanide (1 M in MeOH, 110 ⁇ L, 0.11 mmol) was loaded into a 2 mL sample vial and the mixture stirred at r.t.
- 2 -(methyl 2,3,4-tri-O- benzyl -O-mannopyranoside-6-yl)acetic acid (0.91 M in MeOH, 121 ⁇ L, 0.11 mmol)
- PG2016 Following the general procedure for the deprotection of benzyl ethers, a mixture of the above hexabenzyl ether (33 mg, 0.0235 mmol) and 20% palladium on activated charcoal (65 mg) in MeOH (2.8 mL) was stirred under hydrogen atmosphere at 1 atm for 5 days. General work-up gave the hexol intermediate as a colourless gum. Following the general procedure for sulfonation, the above hexol was sulfonated. The residue was purified via sequential column chromatography (SEC on Bio-Gel P-2 followed by ion exchange column) to give PG2016 as a white powder (12.2 mg, 35%).
- Example 15 PG2015 Step a Following the general procedure for the Ugi reaction, 3,3-dimethylglutaric acid (7.1 mg, 0.0443 mmol) and a solution of each following three reagents: 3-aminopropyl 2,3,4,6- tetra-O-benzyl- -D-mannopyranoside (0.642 M in MeOH, 138 ⁇ L, 0.0886 mmol), formaldehyde (2 M in MeOH, 44.3 ⁇ L, 0.0886 mmol) and cyclohexylisocyanide (1 M in MeOH, 88.6 ⁇ L, 0..0886 mmol) were loaded into a 2 mL sample vial and the mixture stirred at r.t.
- 3-aminopropyl 2,3,4,6- tetra-O-benzyl- -D-mannopyranoside 0.642 M in MeOH, 138 ⁇ L, 0.0886 mmol
- formaldehyde (2 M in Me
- Step b (PG2015). Following the general procedure for the deprotection of benzyl ethers, a mixture of the above hexabenzyl ether (32.3 mg, 0.0202 mmol), 20% palladium on activated charcoal (41 mg) in MeOH (2.8 mL) was stirred under hydrogen atmosphere at 1 atm for 5 days. General work- up gave the octol intermediate as a colourless gum. Following the general procedure for sulfonation, the above octol was sulfonated. The residue was purified via SEC (Bio-Gel P-2) to give PG2015 as a white powder (12.6 mg, 37%).
- Ethyl 2,6-Di-0-benzyl-3,4-di-0-sulfo- ⁇ -D-galactopyranoside, disodium salt (PG2155) The title compound was obtained from ethyl 2,6-di-0-benzyl-3,4-di-0-sulfo- ⁇ -D- galactopyranoside [23] via the general sulfonation procedure as a colourless powder.
- Step a Methyl 4-0-allyl-6-azido-6-deoxy-2,3-di-0-isopropylidene- -D-mannopyranoside
- methyl 6-azido-6-deoxy-a-D-mannopyranoside 311 mg, 1.419 mmol
- 2,2-dimethoxypropane 4.7 mL, 0.3 M
- ( ⁇ )-camphor-lO-sulfonic acid (16 mg, 0.0709 mmol, 5 mol%).
- Step b Methyl 4-0-allyl-6-azido-6-deoxy- -D-mannopyranoside
- Methyl 4-0-allyl-6-azido-6-deoxy-2, 3-di-O-isopropylidene-a-D-mannopyranoside (56 mg, 0.187 mmol) was dissolved in MeCN-MeOH-H 2 O (3 mL, 3 mL and 0.2 mL respectively) and treated with p-toluenesulfonic acid monohydrate (7 mg, 0.0374 mmol, 20 mol%). The mixture was stirred at r.t. for 5 h and triethylamine (0.4 mL) added.
- the mixtures were combined and evaporated.
- the residue was re-dissolved in dichloromethane (50 mL) and stirred with IM ammonium chloride solution (50 mL).
- IM ammonium chloride solution 50 mL
- the less polar spots were slowly disappeared and converted into the polar product.
- the conversion was not further improved after 40 min:
- the dichloromethane phase was separated and stirred with 0.5 M HC1 solution (50 mL) for another 20 min. TLC indicated no further change.
- the DCM phase was separated and washed with brine- IM NaOH, dried (MgSO 4 ).
- Step b Methyl 6-azido-3-0-benzyl-6-deoxy-a-D-mannopyranoside and methyl 6-azido-2-0- benzyl-6-deoxy- a-D-mannopyranoside
- DMF 7.8 mL, 0.1 M
- sodium cyanoborohydride 589 mg, 9.37 mmol, 12 eq
- molecular sieve 3A 1 g
- Step c Methyl 6-azido-2-0-benzyl-6-deoxy-2,3-di-0-sulfonato-a-D-mannopyranoside disodium salt (PG2160) Methyl 6-azido-2-0-benzyl-6-deoxy-a-D-mannopyranoside was sulfonated according to the standard procedure to yield the title compound as a white powder, 64 mg, 59%.
- Step d Methyl 6-azido-3-0-benzyl-6-deoxy-2,4-di-0-sulfonato-a-D-mannopyranoside disodium salt (PG2161) Methyl 6-azido-3-0-benzyl-6-deoxy- a-D-mannopyranoside (64 mg) was sulfonated according to the standard procedure to yield the title compound as a white powder, 58 mg, 66%.
- Example 19 PG2170 Allyl 6-azido-2, 3-0-disulfonato-6-deoxy-4-0-(l-naphthylmethyl)- a-D-mannopyranoside disodium salt (containing 10% of 2-naphthylmethyl isomer) (PG2170)
- the source ofthe minor isomer is the commercial 9:1 mixture of 1- and 2-bromomethylnapthalene used in step a.
- Example 20 Biological Testing of Compounds Methods 1.
- Growth Factor Binding Binding affinities of ligands for the growth factors were measured using a surface plasmon resonance (SPR) based solution affinity assay. The principle of the assay is that heparin immobilised on a sensorchip surface distinguishes between free and bound growth factor in an equilibrated solution of the growth factor and a ligand. Upon injection of the solution, the free growth factor binds to the immobilised heparin, is detected as an increase in the SPR response and its concentration thus determined.
- SPR surface plasmon resonance
- a decrease in the free growth factor concentration as a function of the ligand concentration allows for the calculation of the dissociation constant, K d . It is important to note that ligand binding to the growth factors can only be detected when the interaction involves the heparin binding site, thus eliminating the chance of evaluating non-specific binding to other sites on the protein.
- a 1 : 1 stoichiometry has been assumed for all protein: ligand interactions. The preparation of heparin-coated sensorchips, via immobilisation of biotinylated BSA- heparin on a streptavidin-coated sensorchip, has been described [24].
- Heparin has also been immobilised via aldehyde coupling using either adipic acid dihydrazide or 1,4-diaminobutane.
- solutions were prepared containing a fixed concentration of protein and varying concentrations ofthe ligand in buffer.
- Ligands binding to FGF-1 and VEGF were measured in HBS-EP buffer (10 mM HEPES, pH 7.4, 150 mM NaCI, 3.0 mM EDTA and 0.005% (v/v) polysorbate 20), while binding to FGF-2 was measured in HBS-EP buffer containing 0.3 M NaCI [24].
- HBS-EP buffer 10 mM HEPES, pH 7.4, 150 mM NaCI, 3.0 mM EDTA and 0.005% (v/v) polysorbate 20
- binding to FGF-2 was measured in HBS-EP buffer containing 0.3 M NaCI [24].
- Prior to injection samples were maintained at 4 °C to maximise protein stability.
- K d values are the values fit, using the binding equation, to a plot of [P] versus [L] tota i- Where K d values were measured in duplicate, the values represent the average ofthe duplicate measurements. It has been shown that GAG mimetics that bind tightly to these growth factors elicit a biological response in vivo [24].
- HSV herpes simplex virus
- HSV-1 and HSV-2 two types of herpes simplex virus
- GMK AHl African green monkey kidney cells
- the viral strains used were herpes simplex virus type 1 (HSV-1) KOS321 strain [27] and HSV-2 strain 333 [28]. In both assays the compounds were tested at 200 ⁇ M.
- HSV-1 herpes simplex virus type 1
- HSV-2 strain 333 [28] HSV-2 strain 333 [28]. In both assays the compounds were tested at 200 ⁇ M.
- the compounds were mixed with the virus, incubated for 10 min at room temperature and then the mixture was added to cells, and kept on cells for lh only to allow (or not) the virus attachment to/entry into the cells. Thus this assay reflects whether or not the compound in question has the ability to bind to the virus particles and block its attachment to/entry into the cells. An inhibition is manifested as a decreased number of viral plaques.
- HSV spread The next assay, termed HSV spread, relies on the addition of compound to the cells after the virus attachment/entry steps have already occurred. This assay reflects whether the examined compound has the ability to inhibit virus transmission from an infected to an uninfected cell (cell-to-cell spread) and in addition whether the compound has the ability to enter the cells and inhibit viral replication. Lack of compound activity in the assay of virus infectivity but some activity in the virus spread assay suggests that the compound acts by entering the cells and inhibition of viral replication step(s). An inhibition is manifested as a reduction in the size of viral plaques.
- results are expressed as % of control, ie., as the number (infectivity assay) or the size (spread assay) of viral plaques developed in the presence of compound relative to the mock-treated controls (no compound). Results The results ofthe tests as described in the preceding section are presented in Tables 1 to
- R D CH 2 OS0 3 Na
- R G H 2038 77.9 ⁇ M 2.10 mM 368 ⁇ M
- R A OMe
- R F ,R H OH
- R B ,Rc,R E ,R OS0 3 Na 2039 21.8 ⁇ M 3.50 mM 1.27 mM
- Rj/R K H/OMe (anomeric mixture);
- R S -R N -CH 2 0-; 2045 392 ⁇ M 3.40 mM 1.07 mM
- R M OS0 3 Na;
- R Q OBn;
- R L ,R 0 ,R P ,R R H
- R ⁇ NHCOCH 2 ⁇ Ph(2,4-di-Cl);
- R Mj R N ,R Q OS ⁇ 3 Na; 2096 35.7 ⁇ M 141 ⁇ M 20.4 ⁇ M
- R s * CH 2 OS0 3 Na;
- R P ,RR H
- Rj/R K H/OMe (anomeric mixture);
- RS-RN -CH 2 0-; 2165 1.13 mM ⁇ 25.5 mM 1.70 mM
- R M OBn;
- R Q OS0 3 Na;
- RJ,R K ,RL,RO,RP,RR H 2166 3.60 mM 1.90 mM 2.70 mM
- R ⁇ l,2,3,4-tetra-0-sodi ⁇ un sulfonato-D-glucuronoyl
- R x COCH 2 C(CH 3 ) 2 CH 2 CO; 2015 2.94 ⁇ M 7.56 ⁇ M 267 nM sulfo- ⁇ -D-mannopyranos- 1 -0-yl)-propyl
Abstract
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CA002551181A CA2551181A1 (en) | 2003-12-23 | 2004-12-21 | Glycosaminoglycan (gag) mimetics |
JP2006545842A JP2007515434A (en) | 2003-12-23 | 2004-12-21 | Glycosaminoglycan (GAG) mimics |
AU2004303434A AU2004303434A1 (en) | 2003-12-23 | 2004-12-21 | Glycosaminoglycan (GAG) mimetics |
EP04802102A EP1699806A1 (en) | 2003-12-23 | 2004-12-21 | Glycosaminoglycan (gag) mimetics |
BRPI0417750-9A BRPI0417750A (en) | 2003-12-23 | 2004-12-21 | compound of the formula; pharmaceutical or veterinary composition; compound use, and method for prevention and treatment in the area of mimetic glycosaminoglycan (gag) |
MXPA06007194A MXPA06007194A (en) | 2003-12-23 | 2004-12-21 | Glycosaminoglycan (gag) mimetics. |
IL176474A IL176474A0 (en) | 2003-12-23 | 2006-06-21 | Glycosaminoglycan (gag) mimetics |
NO20063366A NO20063366L (en) | 2003-12-23 | 2006-07-20 | Glycosamylcan (GAG) mimetics |
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-
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- 2004-12-21 KR KR1020067014850A patent/KR20060129296A/en not_active Application Discontinuation
- 2004-12-21 CN CNA2004800407510A patent/CN1906203A/en active Pending
- 2004-12-21 EP EP04802102A patent/EP1699806A1/en not_active Withdrawn
- 2004-12-21 CA CA002551181A patent/CA2551181A1/en not_active Abandoned
- 2004-12-21 MX MXPA06007194A patent/MXPA06007194A/en not_active Application Discontinuation
- 2004-12-21 JP JP2006545842A patent/JP2007515434A/en active Pending
- 2004-12-21 BR BRPI0417750-9A patent/BRPI0417750A/en not_active Application Discontinuation
- 2004-12-21 WO PCT/AU2004/001800 patent/WO2005061523A1/en not_active Application Discontinuation
- 2004-12-21 RU RU2006126718/04A patent/RU2006126718A/en not_active Application Discontinuation
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2006
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Also Published As
Publication number | Publication date |
---|---|
CN1906203A (en) | 2007-01-31 |
EP1699806A1 (en) | 2006-09-13 |
CA2551181A1 (en) | 2005-07-07 |
KR20060129296A (en) | 2006-12-15 |
RU2006126718A (en) | 2008-01-27 |
BRPI0417750A (en) | 2007-04-10 |
MXPA06007194A (en) | 2007-01-19 |
JP2007515434A (en) | 2007-06-14 |
NO20063366L (en) | 2006-07-20 |
IL176474A0 (en) | 2006-10-05 |
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