WO2005003999A8 - Information management system for biochemical information - Google Patents

Information management system for biochemical information

Info

Publication number
WO2005003999A8
WO2005003999A8 PCT/FI2004/000424 FI2004000424W WO2005003999A8 WO 2005003999 A8 WO2005003999 A8 WO 2005003999A8 FI 2004000424 W FI2004000424 W FI 2004000424W WO 2005003999 A8 WO2005003999 A8 WO 2005003999A8
Authority
WO
WIPO (PCT)
Prior art keywords
variable
values
information
value matrix
matrix
Prior art date
Application number
PCT/FI2004/000424
Other languages
French (fr)
Other versions
WO2005003999A1 (en
Inventor
Pertteli Varpela
Meelis Kolmer
Tarmo Pellikka
Original Assignee
Medicel Oy
Pertteli Varpela
Meelis Kolmer
Tarmo Pellikka
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Priority claimed from FI20031020A external-priority patent/FI117988B/en
Priority claimed from FI20031027A external-priority patent/FI117067B/en
Priority claimed from FI20031026A external-priority patent/FI117068B/en
Priority claimed from FI20031025A external-priority patent/FI118101B/en
Priority claimed from FI20031028A external-priority patent/FI118063B/en
Priority claimed from FI20045040A external-priority patent/FI118102B/en
Application filed by Medicel Oy, Pertteli Varpela, Meelis Kolmer, Tarmo Pellikka filed Critical Medicel Oy
Priority to JP2006516238A priority Critical patent/JP2007520773A/en
Priority to CA002531131A priority patent/CA2531131A1/en
Priority to AU2004254729A priority patent/AU2004254729A1/en
Publication of WO2005003999A1 publication Critical patent/WO2005003999A1/en
Publication of WO2005003999A8 publication Critical patent/WO2005003999A8/en

Links

Classifications

    • G—PHYSICS
    • G06—COMPUTING; CALCULATING OR COUNTING
    • G06Q—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR ADMINISTRATIVE, COMMERCIAL, FINANCIAL, MANAGERIAL OR SUPERVISORY PURPOSES; SYSTEMS OR METHODS SPECIALLY ADAPTED FOR ADMINISTRATIVE, COMMERCIAL, FINANCIAL, MANAGERIAL OR SUPERVISORY PURPOSES, NOT OTHERWISE PROVIDED FOR
    • G06Q10/00—Administration; Management
    • G06Q10/10—Office automation; Time management
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B5/00—ICT specially adapted for modelling or simulations in systems biology, e.g. gene-regulatory networks, protein interaction networks or metabolic networks
    • G16B5/10—Boolean models
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G16B50/10—Ontologies; Annotations
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G16B50/20—Heterogeneous data integration
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B5/00—ICT specially adapted for modelling or simulations in systems biology, e.g. gene-regulatory networks, protein interaction networks or metabolic networks

Abstract

An information management system for managing biochemical information (200). The biochemical information (200) comprises data sets (202) and each data set comprises a variable value matrix containing variable values organized as rows and columns; a row description list, in a variable description language, of the rows in the variable value matrix; a column description list, in a variable description language, of the columns in the variable value matrix; and a fixed dimension description, in a variable description language, of one or more fixed dimensions that are common to all values in the variable value matrix. A benefit achieved by storing the numerical values as a scalar matrix is that the matrix can be analyzed with many commercially available data-mining tools, such as self-organizing maps or other clustering algorithms, that do not readily process dimensioned values.
PCT/FI2004/000424 2003-07-04 2004-07-02 Information management system for biochemical information WO2005003999A1 (en)

Priority Applications (3)

Application Number Priority Date Filing Date Title
JP2006516238A JP2007520773A (en) 2003-07-04 2004-07-02 Information management system for biochemical information
CA002531131A CA2531131A1 (en) 2003-07-04 2004-07-02 Information management system for biochemical information
AU2004254729A AU2004254729A1 (en) 2003-07-04 2004-07-02 Information management system for biochemical information

Applications Claiming Priority (12)

Application Number Priority Date Filing Date Title
FI20031020A FI117988B (en) 2003-07-04 2003-07-04 Information management system for biochemical information
FI20031027A FI117067B (en) 2003-07-04 2003-07-04 Information management system for biochemical information
FI20031025 2003-07-04
FI20031027 2003-07-04
FI20031026 2003-07-04
FI20031028 2003-07-04
FI20031026A FI117068B (en) 2003-07-04 2003-07-04 Information management system for biochemical information
FI20031025A FI118101B (en) 2003-07-04 2003-07-04 Information management system for biochemical information
FI20031020 2003-07-04
FI20031028A FI118063B (en) 2003-07-04 2003-07-04 Information management system for biochemical information
FI20045040 2004-02-16
FI20045040A FI118102B (en) 2003-07-04 2004-02-16 Information control system for controlling the workflow

Publications (2)

Publication Number Publication Date
WO2005003999A1 WO2005003999A1 (en) 2005-01-13
WO2005003999A8 true WO2005003999A8 (en) 2005-09-09

Family

ID=33568951

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/FI2004/000424 WO2005003999A1 (en) 2003-07-04 2004-07-02 Information management system for biochemical information

Country Status (4)

Country Link
JP (1) JP2007520773A (en)
AU (1) AU2004254729A1 (en)
CA (1) CA2531131A1 (en)
WO (1) WO2005003999A1 (en)

Families Citing this family (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
FI118868B (en) * 2005-09-26 2008-04-15 Medicel Oy An information management system for the management of biochemical information
FI119160B (en) * 2005-10-10 2008-08-15 Medicel Oy Database Management System
JP2008003856A (en) * 2006-06-22 2008-01-10 Hitachi Software Eng Co Ltd Bioscientific analysis support program and apparatus

Family Cites Families (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US6138130A (en) * 1995-12-08 2000-10-24 Inventure Technologies, Inc. System and method for processing data in an electronic spreadsheet in accordance with a data type

Also Published As

Publication number Publication date
CA2531131A1 (en) 2005-01-13
AU2004254729A1 (en) 2005-01-13
JP2007520773A (en) 2007-07-26
WO2005003999A1 (en) 2005-01-13

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