WO2005001138A3 - Breast cancer survival and recurrence - Google Patents

Breast cancer survival and recurrence Download PDF

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Publication number
WO2005001138A3
WO2005001138A3 PCT/US2004/019451 US2004019451W WO2005001138A3 WO 2005001138 A3 WO2005001138 A3 WO 2005001138A3 US 2004019451 W US2004019451 W US 2004019451W WO 2005001138 A3 WO2005001138 A3 WO 2005001138A3
Authority
WO
WIPO (PCT)
Prior art keywords
breast cancer
recurrence
profiles
expression
survival
Prior art date
Application number
PCT/US2004/019451
Other languages
French (fr)
Other versions
WO2005001138A2 (en
Inventor
Mark G Erlander
Xiao-Jun Ma
Wei Wang
James L Wittliff
Original Assignee
Arcturus Bioscience Inc
Mark G Erlander
Xiao-Jun Ma
Wei Wang
James L Wittliff
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Arcturus Bioscience Inc, Mark G Erlander, Xiao-Jun Ma, Wei Wang, James L Wittliff filed Critical Arcturus Bioscience Inc
Priority to EP04755560A priority Critical patent/EP1651775A2/en
Publication of WO2005001138A2 publication Critical patent/WO2005001138A2/en
Publication of WO2005001138A3 publication Critical patent/WO2005001138A3/en

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    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G01N33/53—Immunoassay; Biospecific binding assay; Materials therefor
    • G01N33/574—Immunoassay; Biospecific binding assay; Materials therefor for cancer
    • G01N33/57407—Specifically defined cancers
    • G01N33/57415—Specifically defined cancers of breast
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6883—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material
    • C12Q1/6886—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material for cancer
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00—Oligonucleotides characterized by their use
    • C12Q2600/106—Pharmacogenomics, i.e. genetic variability in individual responses to drugs and drug metabolism
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00—Oligonucleotides characterized by their use
    • C12Q2600/112—Disease subtyping, staging or classification
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00—Oligonucleotides characterized by their use
    • C12Q2600/118—Prognosis of disease development
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00—Oligonucleotides characterized by their use
    • C12Q2600/158—Expression markers

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  • Health & Medical Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Immunology (AREA)
  • Engineering & Computer Science (AREA)
  • Molecular Biology (AREA)
  • Organic Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Pathology (AREA)
  • Analytical Chemistry (AREA)
  • Biotechnology (AREA)
  • Biomedical Technology (AREA)
  • Urology & Nephrology (AREA)
  • Hematology (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Physics & Mathematics (AREA)
  • Hospice & Palliative Care (AREA)
  • Biochemistry (AREA)
  • General Health & Medical Sciences (AREA)
  • Oncology (AREA)
  • Microbiology (AREA)
  • Genetics & Genomics (AREA)
  • General Physics & Mathematics (AREA)
  • Biophysics (AREA)
  • Cell Biology (AREA)
  • Medicinal Chemistry (AREA)
  • Food Science & Technology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)

Abstract

The invention provides for the identification and use of gene expression profiles, or patterns, with clinical relevance to breast cancer. In particular, the invention provides the identities of genes that are correlated with patient survival and breast cancer recurrence. The gene expression profiles may be embodied in nucleic acid expression, protien expression, or other expression formats and used to predict the survival of the subjects afflicted with breast cancer and to predict cancer recurrence and The profiles may also be used in the study and/or diagnosis of breast cancer cells and tissue, including the grading of invasive breast cancer, as well as for the study and/or determination of prognosis of a patient. When used for diagnosis or prognosis, the profiles may be used to determine the treatment of breast cancer based upon the likelihood of life expectancy and recurrence.
PCT/US2004/019451 2003-06-18 2004-06-18 Breast cancer survival and recurrence WO2005001138A2 (en)

Priority Applications (1)

Application Number Priority Date Filing Date Title
EP04755560A EP1651775A2 (en) 2003-06-18 2004-06-18 Breast cancer survival and recurrence

Applications Claiming Priority (4)

Application Number Priority Date Filing Date Title
US47996303P 2003-06-18 2003-06-18
US60/479,963 2003-06-18
US54581004P 2004-02-18 2004-02-18
US60/545,810 2004-02-18

Publications (2)

Publication Number Publication Date
WO2005001138A2 WO2005001138A2 (en) 2005-01-06
WO2005001138A3 true WO2005001138A3 (en) 2005-07-07

Family

ID=33555540

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/US2004/019451 WO2005001138A2 (en) 2003-06-18 2004-06-18 Breast cancer survival and recurrence

Country Status (3)

Country Link
US (1) US20050100933A1 (en)
EP (1) EP1651775A2 (en)
WO (1) WO2005001138A2 (en)

Families Citing this family (20)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2004079014A2 (en) * 2003-03-04 2004-09-16 Arcturus Bioscience, Inc. Signatures of er status in breast cancer
CA2575557A1 (en) * 2004-07-30 2006-02-09 Rosetta Inpharmatics Llc Prognosis of breast cancer patients
EP1672079A1 (en) * 2004-12-20 2006-06-21 Georg-August-Universität Göttingen Stiftung öffentlichen Rechts Method of diagnosing cancer
CA2653949A1 (en) * 2006-06-02 2007-12-13 Glaxosmithkline Biologicals S.A. Method
SG142186A1 (en) * 2006-10-20 2008-05-28 Agency Science Tech & Res Breast tumour grading
TWI610939B (en) * 2007-02-21 2018-01-11 腫瘤療法 科學股份有限公司 Peptide vaccines for cancers expressing tumor-associated antigens
WO2009144690A1 (en) * 2008-04-14 2009-12-03 Royal College Of Surgeons In Ireland A method of assessing cancer status in a breast cancer patient
US9670546B2 (en) * 2008-07-15 2017-06-06 Epigenomics Ag Methods and nucleic acids for analyses of cell proliferative disorders
TW201008574A (en) 2008-08-19 2010-03-01 Oncotherapy Science Inc INHBB epitope peptides and vaccines containing the same
EP2161577A1 (en) 2008-09-01 2010-03-10 Atlas Antibodies AB ANLN protein
GB0821787D0 (en) * 2008-12-01 2009-01-07 Univ Ulster A genomic-based method of stratifying breast cancer patients
GB0917457D0 (en) * 2009-10-06 2009-11-18 Glaxosmithkline Biolog Sa Method
WO2012078365A2 (en) * 2010-12-10 2012-06-14 Nuclea Biotechnologies, Inc. Biomarkers for prediction of breast cancer
EP2548971A1 (en) 2011-07-19 2013-01-23 Oncotyrol Center for Personalized Cancer Medicine GmbH CHAC1 transcript variants as marker for breast cancer
AU2012336120B2 (en) * 2011-11-08 2017-10-26 Genomic Health, Inc. Method of predicting breast cancer prognosis
JP5736334B2 (en) * 2012-03-12 2015-06-17 イマティクス バイオテクノロジーズ ゲーエムベーハー Tumor-associated peptide that binds to human leukocyte antibody (HLA) class II molecules indiscriminately
TWI658049B (en) 2013-03-12 2019-05-01 腫瘤療法 科學股份有限公司 Kntc2 peptides and vaccines containing the same
KR101672531B1 (en) * 2013-04-18 2016-11-17 주식회사 젠큐릭스 Genetic markers for prognosing or predicting early stage breast cancer and uses thereof
EP3155592B1 (en) 2014-06-10 2019-09-11 Leland Stanford Junior University Predicting breast cancer recurrence directly from image features computed from digitized immunohistopathology tissue slides
WO2020118462A1 (en) * 2018-12-14 2020-06-18 Pontificia Universidad Catolica De Chile Method for the early detection of gastric cancer by determining lncrna kcnq1ot1

Citations (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2002059377A2 (en) * 2001-01-24 2002-08-01 Protein Design Labs Methods of diagnosis of breast cancer, compositions and methods of screening for modulators of breast cancer
WO2002078642A2 (en) * 2001-03-30 2002-10-10 Origene Technologies, Inc Differentially-expressed and up-regulated polynucleotides and polypeptides in breast cancer
EP1260807A1 (en) * 1997-10-01 2002-11-27 Arcturus Engineering, Inc. Consumable for laser capture microdissection
WO2002103320A2 (en) * 2001-06-18 2002-12-27 Rosetta Inpharmatics, Inc. Diagnosis and prognosis of breast cancer patients

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ATE353974T1 (en) * 2000-04-03 2007-03-15 Corixa Corp METHODS, COMPOSITIONS AND KITS FOR IDENTIFYING AND MONITORING BREAST CANCER
US20040002067A1 (en) * 2001-12-21 2004-01-01 Erlander Mark G. Breast cancer progression signatures
US20030198972A1 (en) * 2001-12-21 2003-10-23 Erlander Mark G. Grading of breast cancer
WO2004079014A2 (en) * 2003-03-04 2004-09-16 Arcturus Bioscience, Inc. Signatures of er status in breast cancer
WO2005098037A1 (en) * 2003-03-07 2005-10-20 Arcturus Bioscience, Inc. Breast cancer signatures
US7504214B2 (en) * 2003-09-19 2009-03-17 Biotheranostics, Inc. Predicting outcome with tamoxifen in breast cancer
US9856533B2 (en) * 2003-09-19 2018-01-02 Biotheranostics, Inc. Predicting breast cancer treatment outcome

Patent Citations (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
EP1260807A1 (en) * 1997-10-01 2002-11-27 Arcturus Engineering, Inc. Consumable for laser capture microdissection
WO2002059377A2 (en) * 2001-01-24 2002-08-01 Protein Design Labs Methods of diagnosis of breast cancer, compositions and methods of screening for modulators of breast cancer
WO2002078642A2 (en) * 2001-03-30 2002-10-10 Origene Technologies, Inc Differentially-expressed and up-regulated polynucleotides and polypeptides in breast cancer
WO2002103320A2 (en) * 2001-06-18 2002-12-27 Rosetta Inpharmatics, Inc. Diagnosis and prognosis of breast cancer patients

Non-Patent Citations (4)

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Title
MA X-J ET AL: "Gene expression profiles of human breast cancer progression", PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF USA, NATIONAL ACADEMY OF SCIENCE. WASHINGTON, US, vol. 100, no. 10, 13 May 2003 (2003-05-13), pages 5974 - 5979, XP002301650, ISSN: 0027-8424 *
MA X-J ET AL: "GENE EXPRESSION SIGNATURES ASSOCIATED WITH CLINICAL OUTCOME IN BREAST CANCER VIA LASER CAPTURE MICRODISSECTION", BREAST CANCER RESEARCH AND TREATMENT, NIJHOFF, BOSTON, US, vol. 82, no. SUPPL 1, December 2003 (2003-12-01), pages S15, XP009035626, ISSN: 0167-6806 *
SORLIE T ET AL: "Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications", PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF USA, NATIONAL ACADEMY OF SCIENCE. WASHINGTON, US, vol. 98, no. 19, 11 September 2001 (2001-09-11), pages 10869 - 10874, XP002215483, ISSN: 0027-8424 *
VEER VAN 'T L J ET AL: "Gene expression profiling predicts clinical outcome of breast cancer", NATURE, MACMILLAN JOURNALS LTD. LONDON, GB, vol. 415, no. 6871, 31 January 2002 (2002-01-31), pages 530 - 536, XP002259781, ISSN: 0028-0836 *

Also Published As

Publication number Publication date
WO2005001138A2 (en) 2005-01-06
EP1651775A2 (en) 2006-05-03
US20050100933A1 (en) 2005-05-12

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