WO2004029618A2 - Methods to predict cholesterol elevations during immunosuppressant therapy - Google Patents

Methods to predict cholesterol elevations during immunosuppressant therapy Download PDF

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Publication number
WO2004029618A2
WO2004029618A2 PCT/EP2003/010798 EP0310798W WO2004029618A2 WO 2004029618 A2 WO2004029618 A2 WO 2004029618A2 EP 0310798 W EP0310798 W EP 0310798W WO 2004029618 A2 WO2004029618 A2 WO 2004029618A2
Authority
WO
WIPO (PCT)
Prior art keywords
patient
gene
haplotype
cholesterol
medication
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Ceased
Application number
PCT/EP2003/010798
Other languages
English (en)
French (fr)
Other versions
WO2004029618A3 (en
Inventor
Sridhar Kudaravalli
Mihael Hristos Polymeropoulos
Rosarelis Torres
Curt Douglas Wolfgang
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Novartis Pharma GmbH Austria
Novartis AG
Original Assignee
Novartis Pharma GmbH Austria
Novartis AG
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Family has litigation
First worldwide family litigation filed litigation Critical https://patents.darts-ip.com/?family=32043422&utm_source=google_patent&utm_medium=platform_link&utm_campaign=public_patent_search&patent=WO2004029618(A2) "Global patent litigation dataset” by Darts-ip is licensed under a Creative Commons Attribution 4.0 International License.
Priority to BR0314552-2A priority Critical patent/BR0314552A/pt
Application filed by Novartis Pharma GmbH Austria, Novartis AG filed Critical Novartis Pharma GmbH Austria
Priority to HK06104588.4A priority patent/HK1084445B/xx
Priority to AU2003287955A priority patent/AU2003287955B2/en
Priority to JP2004539048A priority patent/JP4575775B2/ja
Priority to US10/529,613 priority patent/US7732134B2/en
Priority to CA002500979A priority patent/CA2500979A1/en
Priority to EP03779798A priority patent/EP1549770B1/en
Priority to DE60319719T priority patent/DE60319719T2/de
Publication of WO2004029618A2 publication Critical patent/WO2004029618A2/en
Publication of WO2004029618A3 publication Critical patent/WO2004029618A3/en
Priority to IL167639A priority patent/IL167639A/en
Anticipated expiration legal-status Critical
Priority to US12/705,754 priority patent/US20100184798A1/en
Ceased legal-status Critical Current

Links

Classifications

    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6883Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P3/00Drugs for disorders of the metabolism
    • A61P3/06Antihyperlipidemics
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P37/00Drugs for immunological or allergic disorders
    • A61P37/02Immunomodulators
    • A61P37/06Immunosuppressants, e.g. drugs for graft rejection
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00Oligonucleotides characterized by their use
    • C12Q2600/156Polymorphic or mutational markers

Definitions

  • a determination of which medications to use to treat a patient in need of treatment with an IM would be based on the results of the determination of the nature of the nucleotide pairs at position -511 in the IL-1 ⁇ gene present in the patient.
  • the odds ratio indicates that patients are 5.67 (95% confidence limits: 1.20-9.01) times more likely to have an increase in total blood cholesterol levels to a final concentration >240 mg/dL when treated with the RAD/NEORAL ® regimen if they contain a T at position (-511) in the IL-1 ⁇ gene promoter, or 7.23 (95% confidence limits: 1.20-9.01 ) times more likely to have an increase in total blood cholesterol levels to a final concentration >240 mg/dL when treated with the RAD/NEORAL ® regimen if they contain a C at position (-31) in the IL-1 ⁇ gene promoter.
  • TATAAAA TATA box sequence
  • An allele-specific oligonucleotide primer of the invention has a 3' terminal nucleotide, or preferably a 3' penultimate nucleotide, that is complementary to only one nucleotide of a particular SNP, thereby acting as a primer for polymerase-mediated extension only if the allele containing that nucleotide is present. Allele-specific oligonucleotide primers hybridizing to either the coding or noncoding strand are contemplated by the invention.
  • An ASO primer for detecting IL-1 ⁇ gene polymorphisms could be developed using techniques known to those of skill in the art.
  • the polymorphism may be identified directly, known as positive-type identification, or by inference, referred to as negative-type identification.
  • a site may be positively determined to be either guanine or cytosine for all individual homozygous at that site, or both guanine and cytosine, if the individual is heterozygous at that site.
  • the site may be negatively determined to be not guanine (and thus cytosine/cytosine) or not cytosine (and thus guanine/guanine).
  • Polymorphism Information concerning one or more of the following for a specific gene data location of polymorphic sites; sequence variation at those sites; frequency of polymorphisms in one or more populations; the different genotypes and/or haplotypes determined for the gene; frequency of one or more of these genotypes and/or haplotypes in one or more populations; any known association(s) between a trait and a genotype or a haplotype for the gene.
  • Polymorphism A collection of polymorphism data arranged in a systematic or database methodical way and capable of being individually accessed by electronic or other means.
  • the reference population represents the genetic variation in the population at a certainty level of at least 85%, preferably at least 90%, more preferably at least 95% and even more preferably at least 99%.

Landscapes

  • Health & Medical Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Organic Chemistry (AREA)
  • Engineering & Computer Science (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Immunology (AREA)
  • Wood Science & Technology (AREA)
  • Analytical Chemistry (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Zoology (AREA)
  • Microbiology (AREA)
  • Biotechnology (AREA)
  • Public Health (AREA)
  • Veterinary Medicine (AREA)
  • General Engineering & Computer Science (AREA)
  • Biochemistry (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Pharmacology & Pharmacy (AREA)
  • Pathology (AREA)
  • Nuclear Medicine, Radiotherapy & Molecular Imaging (AREA)
  • Medicinal Chemistry (AREA)
  • Physics & Mathematics (AREA)
  • Biophysics (AREA)
  • Animal Behavior & Ethology (AREA)
  • General Chemical & Material Sciences (AREA)
  • Molecular Biology (AREA)
  • Obesity (AREA)
  • Transplantation (AREA)
  • Hematology (AREA)
  • Diabetes (AREA)
  • Pharmaceuticals Containing Other Organic And Inorganic Compounds (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Medicines That Contain Protein Lipid Enzymes And Other Medicines (AREA)
  • Steroid Compounds (AREA)
  • Investigating Or Analysing Biological Materials (AREA)
  • Medicines Containing Antibodies Or Antigens For Use As Internal Diagnostic Agents (AREA)
PCT/EP2003/010798 2002-09-30 2003-09-29 Methods to predict cholesterol elevations during immunosuppressant therapy Ceased WO2004029618A2 (en)

Priority Applications (10)

Application Number Priority Date Filing Date Title
EP03779798A EP1549770B1 (en) 2002-09-30 2003-09-29 Methods to predict cholesterol elevations during immunosuppressant therapy
CA002500979A CA2500979A1 (en) 2002-09-30 2003-09-29 Methods to predict cholesterol elevations during immunosuppressant therapy
HK06104588.4A HK1084445B (en) 2002-09-30 2003-09-29 Methods to predict cholesterol elevations during immunosuppressant therapy
AU2003287955A AU2003287955B2 (en) 2002-09-30 2003-09-29 Methods to predict cholesterol elevations during immunosuppressant therapy
JP2004539048A JP4575775B2 (ja) 2002-09-30 2003-09-29 免疫抑制療法に際してのコレステロール上昇予知方法
US10/529,613 US7732134B2 (en) 2002-09-30 2003-09-29 Methods to predict cholesterol elevation during immunosuppressant therapy
DE60319719T DE60319719T2 (de) 2002-09-30 2003-09-29 Verfahren zur voraussage der erhöhung von cholesterin während einer immunosuppresiven therapie
BR0314552-2A BR0314552A (pt) 2002-09-30 2003-09-29 Métodos para prognosticar elevações de colesterol durante terapia imunossupressora
IL167639A IL167639A (en) 2002-09-30 2005-03-24 Methods to predict cholesterol elevations during immunosuppressant therapy
US12/705,754 US20100184798A1 (en) 2002-09-30 2010-02-15 Methods to Predict Cholesterol Elevations during Immunosuppressant Therapy

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US41512302P 2002-09-30 2002-09-30
US60/415,123 2002-09-30

Related Child Applications (1)

Application Number Title Priority Date Filing Date
US12/705,754 Division US20100184798A1 (en) 2002-09-30 2010-02-15 Methods to Predict Cholesterol Elevations during Immunosuppressant Therapy

Publications (2)

Publication Number Publication Date
WO2004029618A2 true WO2004029618A2 (en) 2004-04-08
WO2004029618A3 WO2004029618A3 (en) 2004-06-17

Family

ID=32043422

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/EP2003/010798 Ceased WO2004029618A2 (en) 2002-09-30 2003-09-29 Methods to predict cholesterol elevations during immunosuppressant therapy

Country Status (13)

Country Link
US (2) US7732134B2 (enExample)
EP (1) EP1549770B1 (enExample)
JP (1) JP4575775B2 (enExample)
CN (1) CN100453650C (enExample)
AT (1) ATE389034T1 (enExample)
AU (1) AU2003287955B2 (enExample)
BR (1) BR0314552A (enExample)
CA (1) CA2500979A1 (enExample)
DE (1) DE60319719T2 (enExample)
ES (1) ES2302959T3 (enExample)
IL (1) IL167639A (enExample)
PT (1) PT1549770E (enExample)
WO (1) WO2004029618A2 (enExample)

Cited By (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2006128660A1 (en) * 2005-05-31 2006-12-07 Novartis Ag Combination of hmg-coa reductase inhibitors amd mtor inhibitors

Families Citing this family (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP2013509883A (ja) 2009-11-06 2013-03-21 ザ ボード オブ トラスティーズ オブ ザ リーランド スタンフォード ジュニア ユニバーシティ 臓器移植患者における移植片拒絶反応の非侵襲的診断方法
CA2793170C (en) * 2010-03-15 2018-04-17 Virginia Commonwealth University Aerosolized dapsone as a therapy for inflammation of the airway and abnormal mucociliary transport
US20130203769A1 (en) * 2012-02-08 2013-08-08 University Of Cincinnati Targeting Metabolic Adaptive Responses to Chemotherapy

Family Cites Families (6)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5686246A (en) 1995-08-03 1997-11-11 Kornman; Kenneth S. Detecting genetic predisposition to periodontal disease
US5698399A (en) * 1996-04-05 1997-12-16 Duff; Gordon W. Detecting genetic predisposition for osteoporosis
US6210877B1 (en) * 1997-03-10 2001-04-03 Interleukin Genetics, Inc. Prediction of coronary artery disease
US6524795B1 (en) * 1997-03-10 2003-02-25 Interleukin Genetics, Inc. Diagnostics for cardiovascular disorders
GB9711040D0 (en) * 1997-05-29 1997-07-23 Duff Gordon W Prediction of inflammatory disease
EP1463745A4 (en) * 2001-11-19 2007-11-07 Interleukin Genetics Inc FUNCTIONAL POLYMORPHISMS OF THE INTERLEUKIN-1 SITE AFFECTING TRANSCRIPTION AND SUSCEPTIBILITY TO INFLAMMATORY AND INFECTIOUS DISEASES

Cited By (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2006128660A1 (en) * 2005-05-31 2006-12-07 Novartis Ag Combination of hmg-coa reductase inhibitors amd mtor inhibitors
JP2008542317A (ja) * 2005-05-31 2008-11-27 ノバルティス アクチエンゲゼルシャフト HMG−Co−Aレダクターゼ阻害剤とmTOR阻害剤の組み合わせ物

Also Published As

Publication number Publication date
CN100453650C (zh) 2009-01-21
US20060246439A1 (en) 2006-11-02
BR0314552A (pt) 2005-08-09
JP4575775B2 (ja) 2010-11-04
ES2302959T3 (es) 2008-08-01
ATE389034T1 (de) 2008-03-15
AU2003287955B9 (en) 2004-04-19
WO2004029618A3 (en) 2004-06-17
PT1549770E (pt) 2008-06-24
CA2500979A1 (en) 2004-04-08
EP1549770B1 (en) 2008-03-12
US7732134B2 (en) 2010-06-08
IL167639A (en) 2011-10-31
HK1084445A1 (zh) 2006-07-28
AU2003287955B2 (en) 2007-06-21
DE60319719T2 (de) 2009-03-12
EP1549770A2 (en) 2005-07-06
US20100184798A1 (en) 2010-07-22
JP2006500930A (ja) 2006-01-12
DE60319719D1 (de) 2008-04-24
CN1685062A (zh) 2005-10-19
AU2003287955A1 (en) 2004-04-19

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