WO2004018501A1 - Method for synthesizing peptides - Google Patents
Method for synthesizing peptides Download PDFInfo
- Publication number
- WO2004018501A1 WO2004018501A1 PCT/KR2002/001604 KR0201604W WO2004018501A1 WO 2004018501 A1 WO2004018501 A1 WO 2004018501A1 KR 0201604 W KR0201604 W KR 0201604W WO 2004018501 A1 WO2004018501 A1 WO 2004018501A1
- Authority
- WO
- WIPO (PCT)
- Prior art keywords
- peptide
- amino acid
- amine
- derivative
- mixture
- Prior art date
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Classifications
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K1/00—General methods for the preparation of peptides, i.e. processes for the organic chemical preparation of peptides or proteins of any length
- C07K1/02—General methods for the preparation of peptides, i.e. processes for the organic chemical preparation of peptides or proteins of any length in solution
Definitions
- the present invention relates to a novel method for synthesizing peptides in solution, which provides substantial facilitation and acceleration of the whole synthetic procedure.
- a basic problem in peptide synthesis is one of blocking or protecting the ⁇ -amino group from interaction with a carboxyl group on the same amino acid. These undesirable side reactions are prevented by attaching to one amino acid a group that will render the - NH 2 group unreactive and still permit the desired reaction to proceed.
- the blocking group is preferably one that can be easily removed without chemically altering the remainder of the molecule including the peptide linkage that has been built up during the synthesis.
- the peptide chain assembly usually consists of multiple consecutive synthetic cycles, and each cycle includes two basic chemical stages: 1) removal of a protecting group from the ⁇ -amino group of a peptide being built (N ⁇ -deprotection stage), and 2) coupling of the N ⁇ -deprotected peptide with subsequent N ⁇ -protected amino acid or peptide segment. Therefore, the ease and swiftness of performing the N ⁇ -deprotection stage stipulate for the rate and effectiveness of the overall process of the peptide assembly.
- Hydrogenolytic cleavage of the Z group from short peptides is simple and clean; the work-up comprises just removing the catalyst and evaporating the solvent. However, with longer peptides the reaction may appear very slow. In addition, the presence of sulfur- containing amino acids in a peptide renders impossible catalytic hydrogenation.
- the Fmoc group a base-labile protecting group widely utilized in contemporary peptide synthesis, has revealed numerous advantages: it has excellent acid stability; it is readily cleaved in a non-hydrolytic fashion by a variety of amines via base-promoted J3- elimination; other standard peptide protecting groups (i.e. Boc, benzyl) can be removed in its presence; and, the amine generated upon cleavage is the free base (Atherton, E.; Sheppard, R.C., in The Peptides; Udenfriend, S.; Meienhofer, J., Eds.; Academic Press: New York, NY, 1987; Vol. 9, p. 1.).
- urethane amino protecting groups derived from 2-arylsulfonylethanols can be cleaved by amines under non-hydrolytic conditions via base-promoted ⁇ -elimination, a mechanism very similar to that described for the Fmoc cleavage (Samukov, V.V.; Sabirov, A.N.; Troshkov, M.L. Zh. Obshchei Khim. 1988, 58, 1432).
- the urethane cleavage product aryl vinyl sulfone
- the product of trapping represents a vinyl sulfone-amine adduct, i.e.
- the radical R 1 in the urethane structure may be substituted or unsubstituted aryl, however, in order to provide a reasonably high rate of urethane cleavage by base-promoted J3 -elimination it is preferable to employ aryls bearing strong electron-withdrawing substituents.
- substituted aryl radicals the most preferable are 4-nitrophenyl and 4-sulfonylated phenyls.
- N ⁇ -protecting group represents known 2-(4-nitrophenyl)sulfonylethoxycarbonyl (Nsc) group (Samukov, V.V.; Sabirov, A.N.; Pozdnyakov, P.I. Tetrahedron Left. 1994, 35, 7821; U.S. Patents 5,616,788; 6,265,590).
- the group of 4-sulfonylated phenyls can be exemplified by the 2-(4- methylsufonylphenyl)sulfonylethoxycarbonyl (Mpc) group already known in the art as an amino protecting group (Verhart, C; Tesser, G.
- Other preferred embodiments of the group include, for example, 4- phenylsulfonylphenyl and a variety of 4-sulfonamide derivatives, namely, 4- dimethylamidosulfonylphenyl; 4-diethylamidosulfonylphenyl; 4-morpholidosulfonyl- phenyl; 4-piperididosulfonylphenyl.
- a secondary amine employed as a cleavage and scavenging reagent to combine properties of a strong base and a potent nucleophile. Also important are physical properties of the amine.
- the separation of an excess of the amine from a reaction mixture after the N ⁇ -deprotection reaction may be achieved in a variety of ways, however, the most simple and expeditious way is the vacuum distillation (evaporation). It is thus desirable for the amine to be volatile (i.e., to have a low boiling point).
- amines which meet all these requirements the most preferable are: dimethylamine; diethylamine; di-n-propylamine; piperidine, pyrrolidine; morpholine.
- the excess of an amine required for efficient cleavage and trapping may vary from 2 to 100 molar equivalents; the optimal excess for a particular case can easily be selected by a practitioner in the area of peptide chemistry.
- Solvents suitable for conducting the N ⁇ -deprotection stage are preferably polar, aprotic and volatile solvents capable of dissolving starting materials and reaction products, such as dichloromethane, acetonitrile, tetrahydrofuran, dioxane, N,N-dimethylformamide, N,N-dimethylacetamide, N-methylpyrrolidone, dimethylsulfoxide, and the like.
- the equimolar mixture of an N ⁇ -deprotected amino acid or peptide derivative and a vinyl sulfone-amine adduct is further introduced without any additional work-up into the coupling reaction with the next peptide or amino acid derivative N ⁇ -protected with the above indicated or another urethane group.
- an ⁇ -carboxylic function of the Not-protected component for coupling can be achieved by a variety methods known in the art, for example, by the preceding formation of active esters, such as 4-nitrophenyl, pentachlorophenyl, pentafluorophenyl, 1-hydroxybenzotriazolyl esters or other known types of active esters; by the conversion into symmetric or mixed anhydrides, or into azides. Coupling may also be performed in the presence of known coupling reagents, e.g.
- Isolation of the newly formed peptide from the reaction mixture can be performed by usual procedures known in the art, e.g. extraction, precipitation, washing, chromatography, etc.
- side chains of amino acid or peptide derivatives can be protected with appropriate protecting groups during synthetic cycles and then deprotected to obtain the final product.
- protecting groups that can be used, their application, and their subsequent removal are well documented in the literature and known to those skilled in the art.
- Chromatographic mobility values R f are shown for thin-layer chromatography sheets Alufolien Kieselgel 60 F 254 (Merck, Darmstadt, Germany); chloroform/methanol/acetic acid, 95:5:3 (A) and 90:10:3 (B), and ethyl acetate/pyridine/acetic acid/water, 60:5:15:10 (C), have been used as developing solvents, spots are detected by UV-absorbance and/or by ninhydrin reaction. Molecular ion masses (M+H) + have been measured using MALDI- TOF VISION 2000 device (Thermo Bioanalysis, England).
- Example 1 2-(4-Phenylsulfonyl)phenylsulfonylethyl chloroformate (Pspsc-Cl) a.
- 2-(4-Phenylsulfonyl)phenylsulfonylethanol To a stirred solution of 2-(4-chlorophenyl)sulfonylethanol (4.41 g) and thiophenol
- a mixture of crude N,N-dimethyl-4-bromobenzenesulfonamide, 3 ml of 2- mercaptoethanol and 30 ml of DMF is supplemented with 18 ml of 2 n. ethanolic solution of KOH and warmed for 8 h at 70°C.
- the mixture is diluted with 200 ml of water and extracted with 2 x 70 ml of ethyl acetate.
- the extract is washed with 5% aq. NaHCO 3 and brine, dried over anhydrous sodium sulfate and evaporated at reduced pressure.
- the oily residue is then dissolved in 50 ml of acetone. To the solution, 4 ml of 0.3 M aq.
- Dmspsc-Cl Prepared from 2-(4-dimethylamidosulfonyl)phenylsulfonylethanol as described in the Example lb. Mp 135°C (softening), 144°C.
- CiiHi 4 ClNO 6 S 2 calcd.: C 37.13%, H 3.97%, N 3.94%; found: C 37.42%, H 4.05%, N 3.77%.
- N ⁇ -Protected amino acids prepared by this method are listed in the Table 1.
- Nsc- and Mpc-amino acids are prepared according to published procedures.
- Table 1 N ⁇ -Protected amino acids
- the dipeptide (Example 4a) is dissolved in DMF-piperidine mixture (1:4, v/v; 3 ml) and, after 10 min, evaporated to dryness at 1 mm Hg. The residue is co-evaporated with 3 ml of DMF and dissolved in DMF (2 ml). To the solution, Pipspsc-Gly-OH (0.5 mmol, entry 12, Table 1), HOBt (0.74 mmol), NMM (1 mmol) and BOP (0.6 mmol) are added, and the mixture is kept for 1.5 h at ambient temperature. The mixture is then distributed between 25 ml of ethyl acetate and 20 ml of 5% aq.
- the tripeptide (Example 4b) is dissolved in DMF-piperidine mixture (1:4, v/v; 3 ml) and, after 15 min, evaporated to dryness at 1 mm Hg. The residue is co-evaporated with 3 ml of DMF and dissolved in DMF (2 ml). To the solution, Dmspsc-Gly-OH (0.45 mmol, entry 11, Table 1), HOBt (0.6 mmol), NMM (0.8 mmol) and BOP (0.5 mmol) are added, and the mixture is kept for 1.5 h at ambient temperature. The mixture is then distributed between 35 ml of ethyl acetate and 20 ml of 5% aq.
- the tetrapeptide (Example 4c) is dissolved in DMF-piperidine mixture (1:4, v/v; 3 ml) and, after 15 min, evaporated to dryness at 1 mm Hg. The residue is co-evaporated with 3 ml of DMF and dissolved in DMF (3 ml). To the solution, Boc-Tyr(Boc)-OPfp (0.4 mmol) is added, and the mixture is kept for 30 min at ambient temperature. The mixture is then distributed between 35 ml of ethyl acetate and 20 ml of 5% aq. NaHCO 3 , the organic phase is separated, washed subsequently with water, 0.5 n. aq.
- Example 5 Synthesis of Leu-Glu-Asp-Gly-Pro-Lys-Phe-Leu (THF- ⁇ 2) a.
- Nsc-Lys(Boc ⁇ Phe-Leu-OtBu Mspsc-Phe-Leu-OtBu (0.87 mmol, Example 4a) is N ⁇ -deprotected as described in the Example 4b and dissolved in 4 ml of DMF.
- Nsc-Lys(Boc)-OH (1 mmol
- HOBt 1.5 mmol
- BOP 1.1 mmol
- NMM (2 mmol
- the tripeptide (Example 5a) is dissolved in DMF-piperidine mixture (1:4, v/v; 5 ml) and, after 15 min, evaporated to dryness at 1 mm Hg. The residue is co-evaporated with 3 ml of DMF and dissolved in DMF (5 ml). To the solution, Nsc-Pro-OH (0.8 mmol), HOBt (1.2 mmol), NMM (1.8 mmol) and BOP (0.85 mmol) are added, and the mixture is kept for 1.5 h at ambient temperature. The mixture is then distributed between 35 ml of ethyl acetate and 20 ml of 5% aq.
- the tetrapeptide (Example 5b) is dissolved in DMF-piperidine mixture (1:4, v/v; 5 ml) and, after 15 min, evaporated to dryness at 1 mm Hg. The residue is co-evaporated with 5 ml of DMF and dissolved in DMF (5 ml). To the solution, Nsc-Gly-OH (0.8 mmol), HOBt (1.2 mmol), NMM (1.8 mmol) and BOP (0.85 mmol) are added, and the mixture is kept for 2.5 h at ambient temperature. The mixture is then distributed between 35 ml of ethyl acetate and 20 ml of 5% aq.
- the dipeptide (Example 5d) is dissolved in DMF-piperidine mixture (1:4, v/v; 5 ml) and, after 15 min, evaporated to dryness at 1 mm Hg. The residue is co-evaporated with 2 x 5 ml of DMF and dissolved in DMF (5 ml). To the solution, Boc-Leu 4- nitrophenyl ester (1.1 mmol) and HOBt (0.2 mmol) are added. The mixture is kept for 3 h at ambient temperature. The mixture is then distributed between 35 ml of ethyl acetate and 30 ml of cold 0.25 n. aq. HCl. The organic phase is separated, washed subsequently with cold 0.25 n. aq.
- the pentapeptide (0.38 mmol, Example 5c) is dissolved in DMF-piperidine mixture (1:4, v/v; 3 ml) and, after 15 min, evaporated to dryness at 1 mm Hg. The residue is co- evaporated with 5 ml of DMF and dissolved in DMF (3 ml). To the solution, Boc-Leu- Glu(OtBu)-Asp(OtBu)-OH (0.41 mmol, Example 5e), HOBt (1 mmol), NMM (1 mmol) and BOP (0.55 mmol) are added, and the mixture is kept for 4 h at ambient temperature.
- the protected octapeptide (440 mg) is dissolved in 10 ml of cold TFA-water mixture (9:1, v/v) and stirred for 40 min at ambient temperature. The solution is evaporated, the thick oily residue is treated with cold ether. The precipitate is filtered off, washed with ether and dried under vacuum to yield 380 mg of the crude octapeptide (87% purity by HPLC).
- the peptide is dissolved in 4% aq. acetic acid and purified by preparative reversed phase chromatography on a Lichroprep RP18 column using water-ethanol gradient buffered with acetic acid.
- the present invention provides a novel method for synthesizing peptides in solution, thereby substantially facilitating and accelerating the whole synthetic procedure.
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- Health & Medical Sciences (AREA)
- Genetics & Genomics (AREA)
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Abstract
Description
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Priority Applications (6)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
CA002496739A CA2496739A1 (en) | 2002-08-26 | 2002-08-26 | Method for synthesizing peptides |
CN02829521.8A CN1649892A (en) | 2002-08-26 | 2002-08-26 | Method for synthesizing peptide |
JP2004530625A JP2006511459A (en) | 2002-08-26 | 2002-08-26 | Peptide synthesis method |
EP02765630A EP1546186A4 (en) | 2002-08-26 | 2002-08-26 | Method for synthesizing peptides |
PCT/KR2002/001604 WO2004018501A1 (en) | 2002-08-26 | 2002-08-26 | Method for synthesizing peptides |
AU2002329070A AU2002329070A1 (en) | 2002-08-26 | 2002-08-26 | Method for synthesizing peptides |
Applications Claiming Priority (1)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
PCT/KR2002/001604 WO2004018501A1 (en) | 2002-08-26 | 2002-08-26 | Method for synthesizing peptides |
Publications (1)
Publication Number | Publication Date |
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WO2004018501A1 true WO2004018501A1 (en) | 2004-03-04 |
Family
ID=31944805
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
PCT/KR2002/001604 WO2004018501A1 (en) | 2002-08-26 | 2002-08-26 | Method for synthesizing peptides |
Country Status (6)
Country | Link |
---|---|
EP (1) | EP1546186A4 (en) |
JP (1) | JP2006511459A (en) |
CN (1) | CN1649892A (en) |
AU (1) | AU2002329070A1 (en) |
CA (1) | CA2496739A1 (en) |
WO (1) | WO2004018501A1 (en) |
Families Citing this family (4)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
WO2006045503A1 (en) | 2004-10-19 | 2006-05-04 | Lonza Ag | Method for solid phase peptide synthesis |
CN100355773C (en) * | 2006-01-19 | 2007-12-19 | 九江石化波涛生化科技有限公司 | Process for synthesizing high molecular weight polypeptide polymer |
MX339762B (en) * | 2011-09-28 | 2016-05-27 | Univ Autonoma Del Estado De Morelos | Immunomodulator metallopeptides (immps) and compositions containing same. |
FR3090636B1 (en) * | 2018-12-24 | 2021-01-01 | Strainchem | Peptide Synthesis Process |
Citations (2)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US5712367A (en) * | 1989-10-02 | 1998-01-27 | Rhone-Poulenc Chimie | Process for the solubilization of peptides and process for peptide synthesis |
US5859191A (en) * | 1996-12-05 | 1999-01-12 | The Regents Of The University Of California | Method for the site-specific modification of peptide alpha amines |
Family Cites Families (1)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
KR100418962B1 (en) * | 2001-06-07 | 2004-02-14 | 김학주 | Method for preparing peptide with high yield and purity using 2-(4-nitrophenylsulfonyl)ethoxylcarbonyl-amino acids |
-
2002
- 2002-08-26 EP EP02765630A patent/EP1546186A4/en not_active Withdrawn
- 2002-08-26 CA CA002496739A patent/CA2496739A1/en not_active Abandoned
- 2002-08-26 WO PCT/KR2002/001604 patent/WO2004018501A1/en not_active Application Discontinuation
- 2002-08-26 JP JP2004530625A patent/JP2006511459A/en active Pending
- 2002-08-26 CN CN02829521.8A patent/CN1649892A/en active Pending
- 2002-08-26 AU AU2002329070A patent/AU2002329070A1/en not_active Abandoned
Patent Citations (2)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US5712367A (en) * | 1989-10-02 | 1998-01-27 | Rhone-Poulenc Chimie | Process for the solubilization of peptides and process for peptide synthesis |
US5859191A (en) * | 1996-12-05 | 1999-01-12 | The Regents Of The University Of California | Method for the site-specific modification of peptide alpha amines |
Non-Patent Citations (3)
Title |
---|
ROMOFF T.T. ET AL.: "Urethane-protected N-carboxyanhydrides as unique reactants for the study of intrinsic racemization tendencies in peptide synthesis", J. PEPT. RES., vol. 49, no. 4, April 1997 (1997-04-01), pages 281 - 292, XP000687313 * |
See also references of EP1546186A4 * |
TAM J.P. ET AL.: "Peptide synthesis using unprotected peptides through orthogonal coupling methods", PROC. NATL. ACAD. SCI. USA, vol. 92, no. 26, 19 December 1995 (1995-12-19), pages 12485 - 12489, XP002064667 * |
Also Published As
Publication number | Publication date |
---|---|
EP1546186A1 (en) | 2005-06-29 |
JP2006511459A (en) | 2006-04-06 |
CN1649892A (en) | 2005-08-03 |
EP1546186A4 (en) | 2006-02-08 |
AU2002329070A1 (en) | 2004-03-11 |
CA2496739A1 (en) | 2004-03-04 |
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