WO2003073094A3 - A computational process of automatically determining a polymer composition and sequence using searching techniques based on “branching” - Google Patents

A computational process of automatically determining a polymer composition and sequence using searching techniques based on “branching” Download PDF

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Publication number
WO2003073094A3
WO2003073094A3 PCT/IB2003/000714 IB0300714W WO03073094A3 WO 2003073094 A3 WO2003073094 A3 WO 2003073094A3 IB 0300714 W IB0300714 W IB 0300714W WO 03073094 A3 WO03073094 A3 WO 03073094A3
Authority
WO
WIPO (PCT)
Prior art keywords
branching
sequence
polymer composition
searching techniques
automatically determining
Prior art date
Application number
PCT/IB2003/000714
Other languages
French (fr)
Other versions
WO2003073094A2 (en
Inventor
Renato Bruni
Giorgio Koch
Gianluigi Gianfranceschi
Original Assignee
Renato Bruni
Giorgio Koch
Gianluigi Gianfranceschi
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Renato Bruni, Giorgio Koch, Gianluigi Gianfranceschi filed Critical Renato Bruni
Priority to AU2003209526A priority Critical patent/AU2003209526A1/en
Publication of WO2003073094A2 publication Critical patent/WO2003073094A2/en
Publication of WO2003073094A3 publication Critical patent/WO2003073094A3/en

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Classifications

    • H—ELECTRICITY
    • H01—ELECTRIC ELEMENTS
    • H01J—ELECTRIC DISCHARGE TUBES OR DISCHARGE LAMPS
    • H01J49/00—Particle spectrometers or separator tubes
    • H01J49/0027—Methods for using particle spectrometers
    • H01J49/0036—Step by step routines describing the handling of the data generated during a measurement

Abstract

The present invention concerns a process for the automatic determination of the composition, and/or the possible compositions, and/or the sequence, and/or the possible sequences, of a polymer constituted by at least two different monomeric components. The process comprises processing data coming from mass spectrometry of said polymer by means of an automatic system which uses searching techniques solutions bysed on 'branching'.
PCT/IB2003/000714 2002-02-27 2003-02-26 A computational process of automatically determining a polymer composition and sequence using searching techniques based on “branching” WO2003073094A2 (en)

Priority Applications (1)

Application Number Priority Date Filing Date Title
AU2003209526A AU2003209526A1 (en) 2002-02-27 2003-02-26 A computational process of automatically determining a polymer composition and sequence using searching techniques based on branching

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
IT2002MI000396A ITMI20020396A1 (en) 2002-02-27 2002-02-27 PROCEDURE FOR THE AUTOMATIC DETERMINATION OF THE COMPOSITION AND / OR SEQUENCE OF A POLYMER
ITMI2002A000396 2002-02-27

Publications (2)

Publication Number Publication Date
WO2003073094A2 WO2003073094A2 (en) 2003-09-04
WO2003073094A3 true WO2003073094A3 (en) 2003-12-31

Family

ID=11449387

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/IB2003/000714 WO2003073094A2 (en) 2002-02-27 2003-02-26 A computational process of automatically determining a polymer composition and sequence using searching techniques based on “branching”

Country Status (3)

Country Link
AU (1) AU2003209526A1 (en)
IT (1) ITMI20020396A1 (en)
WO (1) WO2003073094A2 (en)

Citations (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2002061661A2 (en) * 2000-10-19 2002-08-08 Target Discovery, Inc. Methods for determining protein and peptide terminal sequences

Patent Citations (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2002061661A2 (en) * 2000-10-19 2002-08-08 Target Discovery, Inc. Methods for determining protein and peptide terminal sequences

Non-Patent Citations (5)

* Cited by examiner, † Cited by third party
Title
DANCIK VLADO ET AL: "De novo peptide sequencing via tandem mass spectrometry", JOURNAL OF COMPUTATIONAL BIOLOGY, vol. 6, no. 3-4, October 1999 (1999-10-01), pages 327 - 342, XP009019338, ISSN: 1066-5277 *
GORDON D B ET AL: "BRANCH-AND-TERMINATE: A COMBINATORIAL OPTIMIZATION ALGORITHM FOR PROTEIN DESIGN", STRUCTURE, CURRENT BIOLOGY LTD., PHILADELPHIA, PA, US, vol. 7, no. 9, 1999, pages 1089 - 1097, XP001028197, ISSN: 0969-2126 *
HAMM C W ET AL: "PEPTIDE SEQUENCING PROGRAM", COMPUTER APPLICATIONS IN THE BIOSCIENCES, vol. 2, no. 2, 1986, pages 115 - 118, XP000901547 *
MANCINELLI LORETTA ET AL: "Molecular models of acidic peptides from pea bud chromatin and seminal plasma. Divalent cations-mediated interaction with DNA", BIOLOGICAL CHEMISTRY, vol. 380, no. 1, January 1999 (1999-01-01), pages 31 - 40, XP009019314, ISSN: 1431-6730 *
SIDHU KHUSHWANT S ET AL: "Bioinformatic assessment of mass spectrometric chemical derivatisation techniques for proteome database searching", PROTEOMICS, vol. 1, no. 11, November 2001 (2001-11-01), pages 1368 - 1377, XP009019266, ISSN: 1615-9853 *

Also Published As

Publication number Publication date
ITMI20020396A0 (en) 2002-02-27
WO2003073094A2 (en) 2003-09-04
AU2003209526A1 (en) 2003-09-09
ITMI20020396A1 (en) 2003-08-27
AU2003209526A8 (en) 2003-09-09

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