WO2003058500A1 - Rna sequence analyzer, and rna sequence analysis method, program and recording medium - Google Patents

Rna sequence analyzer, and rna sequence analysis method, program and recording medium Download PDF

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Publication number
WO2003058500A1
WO2003058500A1 PCT/JP2003/000011 JP0300011W WO03058500A1 WO 2003058500 A1 WO2003058500 A1 WO 2003058500A1 JP 0300011 W JP0300011 W JP 0300011W WO 03058500 A1 WO03058500 A1 WO 03058500A1
Authority
WO
WIPO (PCT)
Prior art keywords
rna sequence
program
recording medium
analysis method
analyzer
Prior art date
Application number
PCT/JP2003/000011
Other languages
French (fr)
Japanese (ja)
Inventor
Yasuo Uemura
Hisayuki Horai
Original Assignee
Celestar Lexico-Sciences, Inc.
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Celestar Lexico-Sciences, Inc. filed Critical Celestar Lexico-Sciences, Inc.
Priority to EP03701003A priority Critical patent/EP1471444A4/en
Priority to US10/500,112 priority patent/US20050112577A1/en
Publication of WO2003058500A1 publication Critical patent/WO2003058500A1/en

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Classifications

    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B15/00—ICT specially adapted for analysing two-dimensional or three-dimensional molecular structures, e.g. structural or functional relations or structure alignment
    • G16B15/10—Nucleic acid folding
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B15/00—ICT specially adapted for analysing two-dimensional or three-dimensional molecular structures, e.g. structural or functional relations or structure alignment

Abstract

An RNA sequence analyzer which is provided with a grammar storage unit wherein the structural topology of an RNA secondary structure and the corresponding generative grammar fitting for the topology are stored; a syntactic parsing unit wherein an RNA sequence is applied to the generative grammar to induce syntactic pausing trees; and a unit for calculating goodness of fit wherein the goodness of fit for the syntactic parsing trees induced by the syntactic parsing unit is calculated.
PCT/JP2003/000011 2001-12-28 2003-01-06 Rna sequence analyzer, and rna sequence analysis method, program and recording medium WO2003058500A1 (en)

Priority Applications (2)

Application Number Priority Date Filing Date Title
EP03701003A EP1471444A4 (en) 2001-12-28 2003-01-06 Rna sequence analyzer, and rna sequence analysis method, program and recording medium
US10/500,112 US20050112577A1 (en) 2001-12-28 2003-01-06 Rna sequence analyzer, and rna sequence analysis method, program and recording medium

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
JP2001-402081 2001-12-28
JP2001402081A JP3881238B2 (en) 2001-12-28 2001-12-28 RNA sequence analyzing apparatus, RNA sequence analyzing method, program, and recording medium

Publications (1)

Publication Number Publication Date
WO2003058500A1 true WO2003058500A1 (en) 2003-07-17

Family

ID=19189925

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/JP2003/000011 WO2003058500A1 (en) 2001-12-28 2003-01-06 Rna sequence analyzer, and rna sequence analysis method, program and recording medium

Country Status (4)

Country Link
US (1) US20050112577A1 (en)
EP (1) EP1471444A4 (en)
JP (1) JP3881238B2 (en)
WO (1) WO2003058500A1 (en)

Cited By (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
EP1571563A2 (en) * 2004-02-17 2005-09-07 Samsung Electronics Co., Ltd. Sequence indexing method and system

Families Citing this family (7)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP2005284595A (en) * 2004-03-29 2005-10-13 Kiyoshi Asai Rna sequence information processing method, program and device
JP5022361B2 (en) * 2006-03-28 2012-09-12 Ｎｅｃソフト株式会社 RNA secondary structure prediction apparatus, prediction method, program, and recording medium
JP4932444B2 (en) * 2006-11-13 2012-05-16 Ｎｅｃソフト株式会社 Nucleic acid higher order structure prediction apparatus, nucleic acid higher order structure prediction method, program, and recording medium
US8423350B1 (en) * 2009-05-21 2013-04-16 Google Inc. Segmenting text for searching
KR101506916B1 (en) 2013-03-19 2015-03-31 서울대학교산학협력단 Method for identifying miRNA automatically from sample using miRNA automated detection system
CN110021340B (en) * 2018-07-30 2021-04-02 吉林大学 RNA secondary structure generator based on convolutional neural network and planning dynamic algorithm and prediction method thereof
JP6843457B1 (en) * 2020-10-23 2021-03-17 ＮＵＰｒｏｔｅｉｎ株式会社 Gene sequence word-separator, gene corpus generator and program

Non-Patent Citations (3)

* Cited by examiner, † Cited by third party
Title
See also references of EP1471444A4 *
UEMURA Y. ET AL.: "Grammatically modeling and predicting RNA secondary structures", GENOME INFORMATICS SERIES, PROCEEDINGS GENOME INFORMATICS WORKSHOP, no. 6, 11 December 1995 (1995-12-11), pages 67 - 76, XP002963795 *
YOSHIZAWA ET AL.: "RNA niji kozo yosoku shien system no kaihatsu to jisso", THE SOCIETY FOR ARTIFICIAL INTELLIGENCE JINKO CHINO KISORON KENKYUKAI (DAI 32 KAI) SHIRYO, 26 March 1998 (1998-03-26), pages 29 - 35, XP002963794 *

Cited By (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
EP1571563A2 (en) * 2004-02-17 2005-09-07 Samsung Electronics Co., Ltd. Sequence indexing method and system
EP1571563A3 (en) * 2004-02-17 2006-11-02 Samsung Electronics Co., Ltd. Sequence indexing method and system

Also Published As

Publication number Publication date
US20050112577A1 (en) 2005-05-26
EP1471444A4 (en) 2006-11-08
JP3881238B2 (en) 2007-02-14
JP2003203077A (en) 2003-07-18
EP1471444A1 (en) 2004-10-27

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