MASKED PHOSPHATE CONTAINING NUCLEOSIDE DERIVATIVES AND THEIR USE AS ANTTVIRALS
Field of the invention
The present invention relates to a particular class of nucieoside analogues and their therapeutic and prophylactic use, for example in the therapy and prophylaxis of viral infection, particularly in relation to infection by human immunodeficiency virus (HIV), the aetiological agent of acquired immunodeficiency syndrome (AIDS).
Background to the invention There has been much interest in the use of nucieoside analogues as inhibitors of HIV. For example, 2',3'-dideoxy-2',3'- didehydrothymidine (d4T) and 3'-azido-3'-deoxythymidine (AZT) are both known inhibitors of the virus.
The inhibition of HIV by these, and other nucieoside analogues, appears to depend upon conversion of the nucieoside analogue in vivo to the corresponding 5'-triphosphate by endogenous kinase enzymes.
The absolute dependence upon endogenous host-ceil kinases to mediate activation of administered antiviral nucieoside analogues places constraints upon the structures of nucieoside analogues which can be activated. Nucieoside analogues which fall outside these strict constraints will be inactive, even if their 5'-triphosphates are potent and selective inhibitors of a viral target, such as reverse transcriptase (RT).
Thus, the dependence upon endogenous host-cell kinases to mediate activation can lead to poor activity, the emergence of resistance, and clinical toxicity.
If nucleotides could be efficiently delivered intraceliularly, the endogenous nucieoside kinase would be by-passed and the structural constraints such host enzymes impose would be obviated. In this way, wider structural variation of the nucieoside analogue would be permitted, and more specific (less toxic) inhibitors of viral function could be developed and exploited.
However, polar (charged) free nucleotides exhibit extremely poor membrane penetration.
This problem has been addressed by masking the phosphate group (McGuigan, C, Nicholls, S.R., O'Connor, T.J. and Kinchington, D. (1990) Synthesis of some novel dialkyl phosphate derivatives of 3'-modified nucleosides as potential anti-AIDS drugs. Antiviral Chem. Chemother. 1, 25-33). Here, inactive phosphate derivatives of the parent nucieoside analogue having "masked phosphates" penetrate the cell membrane and liberate the bio- active nucleotides intraceliularly. In this way, the endogenous kinases have been by-passed
and delivery of nucleotide analogues intraceliularly has been achieved using several highly modified 3'-substituted nucleosides (McGuigan, C, Kinchington, D., Wang, M.F., Nicholls, S.R., Nickson, C, Galpin, S., Jeffries, D.J. and O'Connor, T.J. (1993) Nucieoside analogues previously found to be inactive against HIV may be activated by simple chemical phosphorylation. FEBS Lett. 322, 249-252; McGuigan, C, Kinchington, D., Nicholls, S.R., Nickson, C. and O'Connor, T.J. (1993) Kinase bypass: a new strategy for anti-HIV drug design. BioMed. Chem. Lett. 3, 1207-1210).
This "kinase by-pass" approach is further developed in W096/29336, which describes a particular class of nucieoside analogues having "masked phosphate" moieties. The analogues are highly potent viral inhibitors in both TX and TK+ cells, and yet retain activity against nucieoside (e.g. d4T) - resistant virus.
The masked phosphate kinase by-pass approach has now been extended to several nucieoside analogues which have modifications in the base region.
Summary of the invention
According to the present invention there is provided a compound of general formula: [masked phosphate] - [sugar] - B, wherein B is
wherein X7, X8 and X9 are the same or different and each is C or N, when X9 is N then there is no R14 group;
R 3 and R14 are the same or different and each is H, N02, CO, COR15, OR15, CN, O, CON(R15)2, COOR13, S02R15, S03R1S, SR15, NHCHO, (CH2)πN(R 5)z or halogen;
R15 is H or hydrocarbyl;
n is O, 1 , 2, 3 or 4;
or a pharmaceutically acceptable derivative or metabolite thereof.
As used herein, the term "masked phosphate" means an analogue or derivative of a phosphate group which has been modified such that it is membrane permeable (i.e. can enter mammalian cells by crossing the cell membrane). Preferably, the masked phosphate groups comprise phosphoramidate derivatives (e.g. aryloxy phosphoramidates).
As used herein, the term "sugar" means any sugar (or sugar analogue) and includes natural sugars (such as ribose and deoxyribose) as well as non-natural sugars.
Preferably, the sugar moiety is
X may be absent or is CH2; Xs may be absent or is CH2;
Q is selected from 0, NR6, S, CR6R7, CRSW3 and C V , where R8 and R7 are independently selected from hydrogen, alkyl and aryl groups; and W3 and
W4 are heteroatoms;
T1 and T2 are independently selected from hydrogen and CH2R8, where R8 is selected from H, OH and F; or T1 and T2 are linked together and together are selected from the groups:
\ / \ / c=c and R 10 . C — C ; R 11
\
/ \
•-
H H R9 R 12
where R9, R10, R1\ R12 are independently selected from H, OH, N3, halogen, CN, NH2, CO-alkyl and alkyl.
Preferably, the masked phosphate moiety is
Ar — O — —
wherein Ar is an aryl group;
Y is oxygen or sulphur;
X1 is selected from O, NR3, S, CR3R4, CR3W1 and C 1W2 where R3 and R4 are independently selected from hydrogen, alkyl and aryl groups; and W1 and
W2 are heteroatoms;
X2 may be absent or selected (independently of X1) from O, NR3, S, CR3R4, CRW and CW1W2 where R3 and R4 are independently selected from hydrogen, alkyl and aryl groups; and W1 and W2 are heteroatoms;
X3 is a C-,.6 alkyl group;
X /4 i :s oxygen or CH2;
Z is selected from O, NRS, S, alkyl and aryl groups, where Rs is selected from hydrogen, alkyl and aryl groups;
J is selected from hydrogen, alkyl, aryl, heterocyclic and polycyclic groups.
According to another aspect of the invention there is provided a compound of the formula (1)
wherein Ar is an aryl group;
Y is oxygen or sulphur;
X1 is selected from O, NR3, S, CR3R4, CR3W1 and CW1W2 where R3 and R4 are independently selected from hydrogen, alkyl and aryl groups; and W and W2 are heteroatoms;
X2-X6 may be absent; or X6 is CH2 and X2 is selected (independently of X1) from 0, NR3, S, CR3R4, CR3W1 and CW1W2 where R3 and R4 are independently selected from hydrogen, alkyl and aryl groups; and W1 and W2 are heteroatoms;
X3 is a d-s alkyl group;
X is oxygen or CH2;
X5 may be absent or is CH2;
Z is selected from O, NR5, S, alkyl and aryl groups, where R5 is selected from hydrogen, alkyl and aryl groups;
J is selected from hydrogen, alky!, aryl, heterocyclic and polycyclic groups;
Q Is selected from O, NR6, S, CRSR7, CRSW3 and CW3W , where R6 and R7 are independently selected from hydrogen, alkyl and aryl groups; and W3 and W4 are heteroatoms;
T1 and T2 are independently selected from hydrogen and CH2R8, where R8 is selected from H, OH and F; or T1 and T2 are linked together and together are selected from the groups:
where R9, R10, R1i, R12 are independently selected from H, OH, N3, halogen, CN, NH2, CO-alkyl and alkyl;
wherein B is
wherein X7, X8 and X9 are the same or different and each is C or N, when X9 is N then there is no R 4 group;
R13 and R14 are the same or different and each is H, N02, CO, COR15, OR15, CN, O, CON(R15)2, COOR15, S02R15, S03R15, SR1S, NHCHO, (CH2)nN(R15)2 or halogen;
R15 is H or hydrocarbyl;
n is O, 1, 2, 3 or 4;
or a pharmaceutically acceptable derivative or metabolite thereof.
Thus the compounds of the invention may contain modified pyrrole, indole, imidazoie (including e.g. benzimidazole) or indazole units in place of the natural nucleic acid bases and it is a surprising feature of the invention that the masked (i.e. phosphoramidated) nucieoside
analogues containing these unusual bases (which in some cases are entirely devoid of biological activity) may exhibit selective antiviral activity at levels as low as 1μM.
Reference in the present specification to an alkyl group means a branched or unbraπched, cyclic or acyclic, saturated or unsaturated (e.g. aikenyl or alkynyl) hydrocarbyl radical. Where cyclic, the alkyl group is- referably C3 to C12, more preferably Cs to Cι0l more preferably C5 to C7.
Where acyclic, the alkyl group is preferably Ci to C 6l more preferably Ci to C6, more preferably methyl. Reference in the present specification to alkoxy and aryloxy groups means alkyl-O- and aryl-O- groups, respectively. Reference to alkoyl and aryloyl groups means alkyl- CO- and aryl-CO-, respectively.
Reference in the present specification to an aryl group means an aromatic group, such as phenyl or naphthyl, or a heteroaromatic group containing one or more, preferably one, heteroatom, such as pyridyl, pyrrolyl, furanyl and thiophenyl. Preferably, the aryl group comprises phenyl or substituted phenyl.
The alkyl and aryl groups may be substituted or unsubstituted, preferably unsubstituted. Where substituted, there will generally be 1 to 3 substituents present, preferably 1 substituent. Substituents may include halogen atoms and halomethyl groups such as CF3 and CCI3; oxygen containing groups such as oxo, hydroxy, carboxy, carboxyalkyl, alkoxy, alkoyi, alkoyioxy, aryloxy, aryloyl and aryloyloxy; nitrogen containing groups such as amino, alkylamino, dialkylamino, cyano, azide and nitro; sulphur containing groups such as thiol, alkylthiol, sulphonyl and sulphoxide; heterocyclic groups which may themselves be substituted; alkyl groups, which may themselves be substituted; and aryl groups, which may themselves be substituted, such as phenyl and substituted phenyl. Alkyl includes substituted and unsubstituted benzyl.
Reference in the present specification to heterocyclic groups means groups containing one or more, pyrrolyl, imidazolyl, pyrazolyl, thiazolyl, isothiazolyl, oxazolyl, pyrrolidinyl, pyrrolinyl, imida∑olidinyl, imidazolinyl, pyrazolidinyl, tetrahydrofuranyl, pyranyl, pyronyl, pyridyl, pyrazinyl, pyridazinyl, piperidyl, piperazinyl, morpholinyl, thionaphthyl, benzofuranyl, isobenzofuryl, indolyl, oxyindolyl, isoindolyl, indazolyl, indolinyl, 7-azaindolyl, isoindazolyl, benzopyranyl, cou arinyl, isocoumarinyl, quinolyl, isoquinolyl, naphthridinyl, cinnolinyl, quinazolinyl, pyridopyridyl, benzoxazinyl, quinoxadinyl, chromenyl, chromanyl, isochromanyl and carbolinyl.
References in the present specification to polycyclic groups means a group comprising two or more non-aromatic carbcyclic or heterocyclic rings which may themselves be substituted.
Reference in the present specification to halogen means a fluorine, chlorine, bromine or iodine radical, preferably fluorine or chlorine radical.
The group Ar comprises a substituted or unsubstituted aryl group, wherein the term "aryl group" and the possible substitution of said group is as defined above. Preferably, Ar is a substituted or unsubstituted phenyl group. Particularly preferred substituents are electron withdrawing groups such as halogen (preferably chlorine or fluorine), trihalomethyl (preferably trifluoromethyl), cyano and nitro groups. Preferably, Ar is phenyl, 3^5-dichloro-phenyl, β- trifluoromethyl-phenyl, p.-cyano-phenyl, or £-nitro-phenyl.
Y may be oxygen or sulphur. Preferably, Y is oxygen.
Preferably, X1 is selected from 0,S and NR3. Preferably, X1 is NR3. When present, R3 is preferably H. When present, W1 and W2 may independently comprise any heteroatom such as a halogen, preferably fluorine.
When present, X2 is preferably oxygen. When present, R3 is preferably H. When present W1 and W2 may independently comprise any heteroatom such as halogen, preferably fluorine.
Preferably, X4 is oxygen.
Preferably, Z is O or NR5. Preferably, R5 is hydrogen. Most preferably, Z is oxygen.
Preferably, J is a substituted or unsubstituted alkyl group. Preferably, J is a substituted or unsubstituted
alkyl group, preferably a benzyl or methyl group.
X3 may be a Cι.6 substituted or unsubstituted, branched or unbranched, methylene chain. Preferably, X3 is a group CR1R2 where R1 and R2 are independently selected from hydrogen, alkyl and aryl groups. Preferably, at least one of R1 and R2 is hydrogen. It will be appreciated that if R1 and R2 are different, the carbon atom to which they are bonded is an asymmetric centre. The stereochemistry at this site may be R or S or mixed. When one of R3 and R4 is hydrogen, the stereochemistry is preferably S.
Where present in Q, W2 and W3 are preferably halogen atoms, preferably fluorine. Preferably, Q is O, S, CH or CF2. Most preferably, Q is oxygen.
When present in T1 and T2, R9 is H or F and/or R 0, R11 and R12 are independently selected from H, F and N3. It will be appreciated that R9 corresponds to the 3' - α position and R10 corresponds to the 3' - β> position.
Preferably, T1 and T2 are linked together and together form the group:
Preferably, Y is oxygen, X is NH, X is CHR , X is oxygen and Z is oxygen
It will be appreciated that the group -NH- CHR1-C02J corresponds to a carboxy-protected α- amino acid. Preferably, the group R1 corresponds to the side chain of a naturally occurring amino acid such as Alanine, Arginine, Asparagine, Aspartic Acid, Cysteine, Cystine, Glycine, Glutamic Acid, Glutamine, Histidine, Isoleucine, Leucine, Lysine, Methionine, Phenylalanine, Proline, Serine, Threonine, Tryptophan, Tyrosine, Valine. Preferably, R1 is Me or PhCH2 corresponding to the side chain of alanine or phenylalanine, respectively. Preferably, the stereochemistry at the asymmetric centre -CHR1- corresponds to an L-amino acid.
According to one preferred embodiment, the present invention provides a compound of formula (3):
I
Z — J
wherein Ar, Y, X1, X2, X3, X4, Z, Q and B are as defined above.
More preferably, the invention provides a compound, according to formula (3), of formula (4):
wherein Ar, R1 and J are as defined above; or a pharmaceutically acceptable derivative or metabolite thereof.
Preferably, the invention provides a compound of formula (4) in which Ar, R1 and J are defined in accordance with Table 1.
Table 1
According to another preferred embodiment, the present invention provides a compound of formula (5)
wherein Ar, Y, X
1, X
2, X
3, X
4, Z, J, R
9, R
10,
11, R
12, Q and B are as defined above.
More preferably, the invention provides a compound, according to formula (5), of formula (6):
wherein Ar, R1, J, R9, R10, R11, R12and B are as defined above,
According to a further preferred embodiment, the present invention provides a compound of formula (7):
wherein Ar, Y, X1, X3, X4, Z, J, Q and B are as defined above and T1 and T2 are independently selected from H and CH2R8 wherein R8 is as defined above. Preferably, T1 is hydrogen. Preferably, T2 is CH2R8.
More preferably, the invention provides a compound, according to formula (7), of formula (8):
wherein Ar, R1, J, T1, T2 and B are as defined above.
It is a feature of the compounds of the present invention that they exhibit significantly enhanced anti-viral efficacy, in both in vitro and in vivo tests, in comparison to their corresponding nucieoside analogue (9)
In addition, the compounds of the present invention exhibit significantly reduced toxicity in comparison to their corresponding analogue (9).
The compounds of the present invention thus exhibit a greatly enhanced selectivity index (ratio of CC (toxicity) : EC50 (activity)) in comparison to their corresponding nucieoside analogue.
The compounds of the present invention may also yield enhanced intracellular levels of nucieoside δ'-triphosphate, the enhancement being particularly significant in TX cells. Thus, the compounds of the present invention may act in part by the known metabolic pathway.
However, it has been found that the compounds of the present invention may also show surprising activity against nucieoside resistant strains of HIV. This indicates that the compounds of the present invention may also act by a pathway independent of a 5'- triphosphate metabolite.
Preferably, in B
(a) X7 and X9 are C and X8 is N; or
(b) R13 is H, X8 and X9 are N and X7 is C; or
(c) R13 is H, R14 is N02, X7 is C and X8 is N.
Examples of preferred moieties B are:
Other examples of B are 3 -amιnoethyl-5-nitroindole and 3-aminomethyl-4-carboxamido pyrrole.
The compounds of the invention described above lead to intracellular generation of high levels of a metabolite (10). Thus, according to another aspect of the invention there is provided a compound of formula (10)
Y
wherein Ar, Y, X1, X2, X3, X4, X5, T1, T2, Q and B are as defined above, or a pharmaceutically acceptable derivative or metabolite thereof.
Metabolite (10) may also be prepared by treatment of the corresponding compound according to formula (1) with hog liver esterase.
Compounds of formula (10) may be direct inhibitors of reverse transcriptase from HIV.
The intracellular generation of anti-viral metabolites such as (10) is an important feature of the invention for several reasons. Firstly, the direct activity of (10) on RT removes the necessity for further nucleotide-kinase mediated phosphorylation, which may be slow in many cases. In cases where the nucieoside monophosphate is not a substrate for host nucleotide kinases, activation will be poor and antiviral efficacy low, even if the triphosphate is an excellent RT inhibitor. In such cases, the generation of metabolites such as (10) may lead to a very significant enhancement in antiviral action. Such compounds may be acting directly in their own right or via a rearrangement, decomposition or disproportionation product or via a contaminant.
Moreover, the structure of metabolites such as (10) may be further designed to optimise binding to the known structure of RT, and such modified metabolites could be delivered intraceliularly using technology herein described, to further enhance the anti-viral effect.
By "a pharmaceutically acceptable derivative" is meant any pharmaceutically acceptable salt, ester or salt of such ester or any other compound which upon administration to a recipient is
capable of providing (directly or indirectly) a compound of the invention (e.g. a compound of formula (1) or (10)).
By "pharmaceutically acceptable metabolite" is meant a metabolite or residue of a compound of the invention (e.g. a compound of formula (1) or (10)) which gives rise to a nucleoside- resistance independent or nucieoside 5'-triphosphate independent mode of reverse transcriptase inhibition exhibited by the compounds of the invention.
Medical applications The compounds of the invention find application in medicine, for example in methods of therapy and/or prophylaxis.
Thus, according to a further aspect of the present invention the compound of the invention is provided in combination with a pharmaceutically acceptable excipient. Any suitable excipient may be used, including for example inert diluents, disintegrating agents, binding agents, lubricating agents, sweetening agents, flavouring agents, colouring agents and preservatives. Suitable inert diluents include sodium and calcium carbonate, sodium and calcium phosphate, and lactose, while corn starch and alginic acid are suitable disintegrating agents. Binding agents may include starch and gelatin, while the lubricating agent, if present, will generally be magnesium stearate, stearic acid or talc.
In a further aspect, the invention provides a pharmaceutical composition comprising the compound of the invention. The pharmaceutical composition may take any suitable form, and includes for example tablets, elixirs, capsules, solutions, suspensions, powders, granules and aerosols. The pharmaceutical composition may take the form of a kit of parts, which kit may comprise the compound of the invention together with instructions for use. The pharmaceuticals of the invention may also comprise the compound of the invention in association (e.g. in admixture or co-packaged with) an adjunctive therapeutic. The adjunctive therapeutic may comprise an antiviral compound. In any of the foregoing pharmaceutical compositions, the compound of the invention may be present in unit dosage form.
In yet another aspect, there is provided a compound according to the invention for use in medicine, for example in therapy or prophylaxis.
According to a further aspect of the invention there is provided the use of a compound of the invention for the manufacture of a medicament for use in therapy or prophylaxis.
In a yet further aspect of the invention, there is provided a process for the manufacture of a medicament for use in therapy or prophylaxis characterized in the use of a compound of the invention (e.g. as an active ingredient).
In another aspect, the invention provides a method of therapy, prophylaxis or diagnosis comprising administration to a patient an effective dose of a compound according to the invention.
Preferably, the therapy or prophylaxis is the therapy or prophylaxis of a viral infection.
The viral infection may comprise any viral infection such as herpes virus (including HSV 1 and
HSV 2), CMV, VZV, EBV, HAV, HBV, HCV, HDV, papillo a, rabies and influenza.
In particularly preferred embodiments the viral infection is an HIV infection, including for example HIV-l or HIV-II: it is a feature of the present invention that the compounds exhibit good activity against both HIV-l and HIV-ll. Thus, the invention finds application in the treatment or prevention of AIDS.
Without wishing to be bound by any theory, it is thought that the medical applications of the present invention rest on the ability of the compounds of the invention to inhibit reverse transcriptase. In particular, the compounds of the invention appear to inhibit reverse transcriptase in a nucleoside-resistance independent or nucieoside δ'-triphosphate independent manner.
Thus, according to a further aspect of the present invention there is provided use of a compound of the present invention in the manufacture of a medicament for use in the inhibition of a reverse transcriptase by a nucleoside-resistance independent or nucieoside δ'- triphosphate independent mode of action.
According to a further aspect of the present invention there is provided a pharmaceutical composition comprising a compound of the present invention in combination with a pharmaceutically acceptable excipient.
According to a further aspect of the present invention there is provided a method of preparing a pharmaceutical composition comprising the step of continuing a compound of of the present invention with a pharmaceutically acceptable excipient.
The medicaments employed in the present invention can be administered by oral or parenteral routes, including intravenous, intramuscular, intraperitoneal, subcutaneous, transdermal, airway (aerosol), rectal, vaginal and topical (including buccal and sublingual) administration.
For oral administration, the compounds of the invention will generally be provided in the form of tablets or capsules, as a powder or granules, or as an aqueous solution or suspension.
Tablets for oral use may include the active ingredient mixed with pharmaceutically acceptable excipients such as inert diluents, disintegrating agents, binding agents, lubricating agents, sweetening agents, flavouring agents, colouring agents and preservatives. Suitable inert diluents include sodium and calcium carbonate, sodium and calcium phosphate, and lactose, while corn starch and alginic acid are suitable disintegrating agents. Binding agents may include starch and gelatin, while the lubricating agent, if present, will generally be magnesium stearate, stearic acid or talc. If desired, the tablets may be coated with a material such as glyceryl monostearate or glyceryl distearate, to delay absorption in the gastrointestinal tract.
Capsules for oral use include hard gelatin capsules in which the active ingredient is mixed with a solid diluent, and soft gelatin capsules wherein the active ingredient is mixed with water or an oil such as peanut oil, liquid paraffin or olive oil.
Formulations for rectal administration may be presented as a suppository with a suitable base comprising for example cocoa butter or a saiicylate.
Formulations suitable for vaginal administration may be presented as pessaries, tampons, creams, gels, pastes, foams or spray formulations containing in addition to the active ingredient such carriers as are known in the art to be appropriate.
For intramuscular, intraperitoneal, subcutaneous and intravenous use, the compounds of the invention will generally be provided in sterile aqueous solutions or suspensions, buffered to an appropriate pH and isotonicity.
Suitable aqueous vehicles include Ringer's solution and isotonic sodium chloride. Aqueous suspensions according to the invention may include suspending agents such as cellulose derivatives, sodium alginate, polyvinylpyrrolidone and gum tragacanth, and a wetting agent such as lecithin. Suitable preservatives for aqueous suspensions include ethyl and n-propyl p- hydroxybenzoate.
The compounds of the invention may also be presented as liposome formulations.
In general a suitable dose will be in the range of 0.1 to 300 mg per kilogram body weight of the recipient per day, preferably in the range of 6 to 150 mg per kilogram body weight per day and most preferably in the range 15 to 100 mg per kilogram body weight per day. The desired dose is preferably presented as two, three, four, five or six or more sub-doses administered at appropriate intervals throughout the day. These sub-doses may be administered in unit dosage forms, for example, containing 10 to 1500 mg, preferably 20 to 1000 mg, and most preferably 50 to 700 mg of active ingredient per unit dosage form.
According to a further aspect of the present invention there is provided a process for the preparation of a compound according to the present invention, the process comprising reaction of a compound of formula (11)
with a compound of formula (12)
Ar — O — P — CI
(12) X I,3 c = x4
I
Z — J
The reaction may be carried out in the tetrahydrofuran in the presence of N-methylimida∑ole.
Alternatively, the compounds of the present invention may be prepared by reaction of a compound of formula (13) or a suitable derivative thereof
with ArOH and a compound of formula (14) or suitable derivatives thereof
The invention will now be described with reference to the following exemplary embodiments, which are purely illustrative and not intended to be limiting in any way. It will be appreciated that modifications to detail may be made whilst still falling within the scope of the invention.
Examplification
The synthetic strategy used for the preparation of the aryloxy phosphoramidates closely follows published procedures (McGuigan, C, Pathirana, R.N., Mahmood, N., Devine, K.G. and Hay, A.J. (1992) Aryl phosphate derivatives of AZT retain activity against HIV1 in cell lines which are resistant to the action of AZT. Antiviral Res. 17, 311-321; McGuigan, C, Pathirana, R.N., Balzarini, J., and De Clercq, E. (1993) Intracellular delivery of bio-active AZT nucleotides by aryl phosphate derivatives of AZT. J. Med. Chem. 36, 1048-1052).
The procedure involves the initial preparation of the appropriate phosphorochloridate from phenyl phosphorodichloridate and an a ine, followed by its reaction with the parent nucieoside analogue. Thus, reaction of the phenyl methylalaninyl phosphorochloridate with pyrrole nucieoside analogue (Loakes, D. and Brown, D.M. (1994) 5-Nitroindole as a universal base analogue. Nucleic Acids Res. 22, 4039-4043) in THF containing N-methylimidazole gave [2] in moderate yield after purification by column chromatography. This was isolated as a mixture of diastereoisomers, as evidenced by the presence of two closely spaced signals in the P-31 NMR [δP ca. 4 ppm] - this arising from mixed stereochemistry at the phosphorus centre. The presence of these isomers was further confirmed in the H-1 NMR spectrum, where the signal due to the carboxyl-methyl group showed extra multiplicity. Carbon-13 NMR data also confirmed the structure, purity, and isomeric nature of [2].
The synthetic route to [2] is shown in Scheme 2.
Similarly prepared and derivatised was the benzimidazole nucieoside [3] and its phosphoramidate [4], which is shown in Scheme 1.
Ail spectroscopic data fully confirmed the structure and purity of these materials, in each case again being isolated as mixtures of diastereoisomers about the phosphorus centre. All samples were pure by HPLC, and entirely free of any contaminating nucieoside.
The antiviral activities of compounds [1] - [4] were evaluated in MT4 and C8166 T-cell lines infected with HIV-1 RF using the MTT cell viability assay or P24 reduction assay (Tables 2 and 3).
Table 2: anti HIV-1 activity and cytotoxicity of indole and pyrrole nucleosides and nucleotides in MT-4 cells using MTT cell viability assay
In Table 2, the data show the 50% effective dose (EC50) and 50% cytotoxic dose (CC50) for the nucleosides and nucleotides 1-4 for HIV-1 RF in MT-4 cells using the MTT cell viability assay.
Table 3: anti HIV-1 activity of indole and pyrrole nucleosides and nucleotides in C8166 T-cells using p24 reduction assay
In Table 3, the data show the 50% effective dose (EC50) for the nucleosides and nucleotides 1-4 for HIV-1 RF in C8166 T-cells using a p24 reduction assay.
The parent nucieoside analogues [1] and [3] were noted to be non-active against HIV-1 at the concentrations tested , with ECS0 values of >100μM.
On the other hand, it is notable that the phosphoramidates are active at μM concentrations. The methylalaninyl phosphoramidate derivative of 3-nitropyrrole [2] showed activity with an EC50 of 7.3 μM ± 2.8 μM and a CC50 of 112 μM; giving it a selectivity index (SI) of 15.3 in MT-
4 cells using a cell viability assay. In C8166 T-cells using a p24 reduction assay, this compound gave an EC50 of 1.5 μM.
The benzimidazole phosphoramidate [4] showed similar activity.with an EC≤o of 6.5 μM ±2.8 μM and a CC50 of 60.5 μM ±6.6 μM in the MT-4 cell viability assay. The compound had an EC50 of 1.0 μM in C8 66 T-cells using the p24 reduction assay. Thus, both phosphoramidates are considerably more potent than their parent nucieoside analogues [1, 3].
Thus, in conclusion the phosphoramidate derivatives of the invention are selective inhibitors of the proliferation of HIV-1 in tissue culture, whilst the parent nucieoside analogues are poorly active. This represents a further example of "kinase by-pass"; the activation of an inactive nucieoside analogue by virtue of judicious chemical phosphorylation leading to the intracellular delivery of free nucleotides and a by-pass of the dependence on nucieoside kinase-mediated activation.
Experimental methods
All experiments involving water-sensitive compounds were conducted under scrupulously dry conditions. Tetrahydrofuran was dried by heating under reflux over sodium and benzophenone followed by distillation. N-methylimidazole was purified by distillation. Nucleosides were dried by storage at elevated temperature in vacuo over P205. Proton, carbon and phosphorus Nuclear Magnetic Resonance (1H, 13C, 3 P NMR) spectra were recorded on a Bruker Avance DPX spectrometer operating at 300MHz, 75.5MHz, and 121.5MHz respectively. All NMR spectra were recorded in CDCI3 at room temperature (20CC ±3°C). 1H and 13C chemical shifts are quoted in parts per million downfield from tetramethylsilane.
J values refer to coupling constants and signal splitting patterns are described as singlet (s), broad singlet (bs), doublet (d), triplet (t), quartet (q), multiplet (m) or combinations thereof. 31P chemical shifts are quoted in parts per million relative to an external phosphoric acid standard. Many proton- and carbon-NMR signals were split due to the presence of [phosphate] diastereoisomers in the samples.
The mode of ionisation for mass spectroscopy unless stated was fast atom bombardment (FAB) with MNOBA as matrix. Chromatography refers to flash column chromatography and was carried out using Merck silica gel 60 (40-60 μM) as stationary phase. Thin layer chromatography was performed using Alugram SIL G/UV2S4 aluminium backed silica gel plates. HPLC was conducted on an ACS quaternary system, using an ODS5 column and an eluant of water/acetonitrile, with 82% water 0-10 min, then a linear gradient to 20% water at 30 min, with a flow rate of 1 ml/min and detection by UV at 265 nm.
General procedure for the preparation of phenyl phosphoramidates of nucieoside analogues In a round-bottomed flask provided with a magnetic stirrer and nitrogen inlet the appropriate nucieoside analogue (0.30 mmol) and N-methylimidazole (0.9 mmol) were dissolved in THF (ca. 3 ml). To this the appropriate phenyl N-alkyl phosphoryl chloride (0.36 mmol) dissolved in THF (1 ml) was added dropwise with a syringe over 5 minutes and the reaction mixture was left stirring for 14 h at ambient temperature. The mixture was dissolved in chloroform (50 ml) and washed with M HCI (20 ml), saturated NaHC03 (20 ml), water (20 ml), dried (MgS04), filtered and the solvent was evaporated. The residue was purified by column chromatography on silica using CHCI3-MeOH 50:1 as eluant. The title compounds were obtained as colourless oils.
l-fβ-O-nitropyrrole-l-vm-S-KN^methylalaninyl^CphenvDphosphorvπ^-deoxy-D-ribose f∑l Yield: 15.5% δH (CDCI3) 1.39 (d, J = 7.0 Hz, 3H, Ala-Me), 2.25-2.60 (m, 2H, H2'), 3.73, 3.75 (2 x s, 3H, C02CH3), 4.05-4.56 (m, 6H, H3\ H4', H5\ Ala-CH, Ala-NH), 5.90 (m, H, H1"), 6.70 (dd, J = 2.2 , 2.7 Hz, 1H, pyrrole), 6.77 (dd, J = 1.9 , 2.7 Hz, 1H, pyrrole), 7.20-7.42 (m, 5H, Ph), 7.75, 7.79 (2 x dd, J = 1.9, 2.2 Hz, 1H, pyrrole); δc (CDCI3) 20.64, 20.71 (Ala-Me), 41.07, 41.15 (C2'), 50.15, 50.23 (Ala-CH), 52.60, 52.66 (C02CH3), 65.53, 65.59, 65.86, 65.94 (2 x d, C5'), 70.27, 70.54 (C31), 84.85, 84.94, 85.15, 85.24 (2 x d, C4'), 88.11, 88.36 (Cf), 105.90-120.05 (pyrrole), 125.24-129.84 (Ph), 137.42 (pyrrole), 150.34, 150.43 (Ph-ipso), 173.84, 173.89, 174.9 (C=0); δP (CDCI3) 4.21, 4.57 (2:3); FAB MS m/e 470.1328 (MH+, C19H25N309P requires 470.1328, 14%); HPLC (RT) 27.17 min.
General procedure for glvcosidation via a furanoid glycal intermediate
To a stirred mixture of the corresponding heterocyclic base (1.39 mmol) in dry CH2Cl2 (10 mL) 2 eq of Λ/,0-bis (trimethylsilyl)acetamide (2.78 mmol) were added and the mixture was heated to reflux until the solution became clear (30 - 60 min). After allowing to cool to room temperature a solution of the furanoid glycal SV-2b-6 (0.20g, 1.16 mmol) in CH2CI2 (2mL) and approximately 300 mg of 4A powdered molecular sieves were added to the previous sylilated base solution. The resulting mixture was stirred for 15 min at room temperature, cooled to - 20°C and then N-iodosuccinimide (0.313 g, 1.39 mmol) was added. After being stirred for 1h, the mixture was filtered and ethyl acetate (50 mL) and 10% aqueous Na2S203 (50 mL) were added. The organic phase was removed and the aqueous phase was extracted with ethyl acetate (2 x 50 mL). The combined organics were dried (MgS04) and concentrated. The residue was purified by column chromatography (hex/ethyl acetate, 1:1) to give the corresponding 2'-iodonucleosides.
1-(2',3'-dideoxy-2'-iodo-5'-0-(pivalovπ-β-D-ribofuranosvi) benzimidazole Following the general procedure benzimidazole (0.165g, 1.39 mmol) was silylated with Λ/.O- bis (trimethylsilyl)acetamide (0.69 mL, 2.78 mmol) for 30 min and then reacted with the glycal (0.20g, 1.16 mmol) and N-iodosuccinimide (0.313 g, 1.39 mmol) for 1h. The residue, a
mixture 10/1 of the b/a anomers (determined by 1HNMR of the crude), was purified by column chromatography (hex ethyl acetate, 1:1). The fastest moving band gave the b-isomer (SV-2b- 36a) as a yellow foam (0,225g, 51 %).
1HNMR (CDCI3) 8.20 (1H, s, H-2), 7.89-7.33 (4H, m, aromatics), 6.46 (1 H, d, H-1', J1',2'=3.4 Hz), 4.82 (1H, m, H-41), 4.41-4.60 (3H, m, H-2', 2H-5'), 2.49 (2H, m, 2H-3'), 1.28 (9H, s, 3CH3) MS (ES+) 451 (M+Na, base)
1 -(2',3'-dideoxy-b-D-glvcero-pent-2-enofuranosvD-benzimidazole Cf1201 [31
The iodonucleoside (0.150g, 0.36mmol) was treated with a freshly prepared solution of MeONa in MeOH (10.8 mmol=0.25g Na in 10 mL MeOH) at room temperature for 6h. The reaction mixture was carefully neutralized with HCHN-MeOH and concentrated to dryness.
The residue was purified by column chromatography (CH2CI2/MeOH, 10:1) to afford (SV-2b-
37) (0.058g, 92%) as a white foam.
1HNMR (CDCI3) 8.01 (1H, s, H-2), 7.58-7.08 (4H, m, aromatics), 6.80 (1H, m, H-1'), 4.42 (1H, m, H-3'), 6.01 (1H, , H-2'), 5.00 (1H, m, H-4'), 3.86 (1H, m, H-5', J4',5'=3.1, J5',5'=12.5 Hz),
3.70 (1H, m, H-5', J4',5'=3.6 Hz).
13CNMR (CDCI3) 142.92, 132.98 (C-4.C-5), 141.54 (C-2), 134.98 (C-3'), 125.09 (C-2'),
123.14, 122.41, 119.98, 109.78 (aromatics), 89.29, 88.36 (C-1', C-4'), 63.02 (C-5').
MS(ES+) 239 (M+Na, base). C12H12N2 HPLC RT 12.71 (acetonitrile/water, 55/45)
1-(2',3'-dideoxy-5'-(phenylmethoxyalaninylphosphate)-β-D-qlvcero-pent-2-enofuranosyπ benzimidazol Cf1210 f41
Phenyl methoxyalaninyl phosphorochloridate (0.574 mmoles, 2.0 equiv) was added to a stirred solution of [3] (O.Oδg, 0.287 mmoles) and N-methylimidazole (137 μl, 1.72 mmoles, 6 equiv) in dry THF (2 mL) at ambient temperature. After 3 h water was added and the solvent removed under pressure. The residue was dissolved in CHCI3 (10 mL), washed with 1 HCI (10 mL), water (10 mL) and brine (10 mL). The organic phase was dried (MgS04) and the solvent removed in vacuo. The residue was purified by chromatotron (CH2CI2/MeOH, 20:1) to give SV2b63 (66 mg, 56%) as a white foam. 31PNMR 4.52, 4.27 (1:1)
1HNMR (CDCI3) 8.50, 8.30 (1H, s, H-2), 7.95-6.98 (10H, m, Aromatics, H-1'), 6.55, 6.43 (1H, m, H-3'), 6.25, 6.19 (1H, m, H-2'), 5.15 (1H, m, H-4'), 4.24 (2H, m, 2H-5'), 4.06 (1H, m, Ala- CH), 3.76 (1H, m, Ala-NH), 3.62,3.65 (3H, s, Ala-OCH3), 1.02, 1.35 (3H, d, Ala-CH3, J=7.0 Hz).
13CNMR (CDCI3) 173.83, 173.74 (C02Me), 150.53, 150.45, 150.36 (Phipso-POPh), 141.22, 141.05, 132.63, 124,09, 123.83, 123.58, 119.68, 119.46, 110.57, 110.41 (Aromatics-Bzi), 134.31, 133.99 (C-3'), 129.63, 129.55 (Phmeta-POPh), 125.80, 125.77 (C-2'), 124.87, 124.30 (Phpara-OPh), 120.30, 120.22, 120.16 (d, Phorto-POPh, JP,C=5.5, 5.1 Hz), 89.91, 89.80 (C- 1'), 85.84, 85.79, 85.73, 85.67 (d, C-4", JP,c=4.2, 4.4 Hz), 66.90, 66.83, 66.34, 66.28 (d, C-5',
JP,c=5.5, 4.5 Hz), 52.39, 52.33 (Ala-OCH3), 50.30, 49.98 (Ala-CH), 20.59, 20.53, 20.30, 20.23 (d, Ala-CH3, JP,C=4.4, 5.1 Hz). MS(ES+) 480 (M+Na, base) C22H24N306P requires 457.426 HPLC RT 26.03, 26.45
Antiviral Assays
The anti-HIV-1 activities and toxicities of compounds were assessed in MT-4 cells using the MTT cell viability assay as previously described (Pauwels, R., Bal∑arini, J., Schols, D., Baba, M., Desmyter, J., Rosenberg, I., Holy, A., and De Clercq, E. (1988) Rapid and automated tetrazolium-based colorimetric assay for the detection of anti-HIV compounds. J. Virol. Methods, 20, 309-321).
Briefly, MT-4 cells were infected for 1h at room temperature at low multiplicity. The cells were then washed and distributed into triplicate wells of 96-well cell culture plates, containing different concentrations of test compounds, or no compound, at a concentration of 5 x 104 cells per well. The plates were incubated at 37°C for 6 days and then cell viability was assessed by adding 10 μl of MTT (7.5 mg/ml) in PBS to each well, and then incubating the plates for an additional hour. The formazan crystals which formed were solubilised by adding 100 μl of acidified isopropanol to each well and mixing. The absorbance was read at 540 nm, and dose-response curves of OD versus drug concentration were plotted. Cytotoxicity was assesssed in parallel by culturing uninfected ceils in the same concentrations as test compounds.
Anti-HIV activity was confirmed in C8166 T-cells infected with HIV-1 RF using a p24 reduction assay. Briefly, C8166 cells were infected with HIV-1 RF at low multiplicity for 2h at room temperature. The cells were then washed 3 times, distributed into wells of 48-well cell culture plates containing different concentrations of test compound, or no compound, and incubated at 37°C. After 3 days, the cell-free culture fluid was harvested and assayed for levels of viral p24 antigen using a commercially available ELISA (Murex), according to the manufacturer's instructions. Dose-reponse curves were plotted of p24 (% inhibition compared with untreated controls) versus drug concentration.
Equivalents
The foregoing descriptions detail presently preferred embodiments of the present invention. Numerous modifications and variations in practice thereof are expected to occur to those skilled in the art upon consideration of these descriptions. Those modifications and variations are intended to be encompassed within the claims appended hereto.
Scheme 1: Cf1201 and Cf 1210 synthesis
Cf 1210 28%
Scheme 2. C1073 and Cf 1105 synthesis