WO2002012336A9 - TGF-β THERAPEUTICS, COMPOSITIONS AND METHODS OF USE - Google Patents
TGF-β THERAPEUTICS, COMPOSITIONS AND METHODS OF USEInfo
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- WO2002012336A9 WO2002012336A9 PCT/US2001/004192 US0104192W WO0212336A9 WO 2002012336 A9 WO2002012336 A9 WO 2002012336A9 US 0104192 W US0104192 W US 0104192W WO 0212336 A9 WO0212336 A9 WO 0212336A9
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- tgfβ
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K38/00—Medicinal preparations containing peptides
- A61K38/16—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
- A61K38/17—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
- A61K38/18—Growth factors; Growth regulators
- A61K38/1841—Transforming growth factor [TGF]
Definitions
- pluripotent progenitor cells could be extremely useful in the treatment of different disorders that are characterized by insufficient or abnormal functioning of the fully differentiated cells in a given organ, as for example in the human pancreas or liver.
- IDDM Insulin-dependent diabetes mellitus
- IDDM insulin-dependent diabetes mellitus
- the cause of the raised sugar levels is insufficient secretion of the hormone insulin by the pancreas.
- the body's cells are not able to absorb sugar from the blood stream in normal fashion, and the excess sugar accumulates in the blood.
- Chronically elevated blood glucose damages tissues and organs.
- IDDM is treated with insulin injections. The size and timing of insulin injections are influenced by measurements of blood sugar. There are over 400 million diabetics in the world today. For instance, diabetes is one of the most prevalent chronic diseases in the United States, and a leading cause of death.
- NIDDM non-insulin-dependent diabetes mellitus
- IDDM insulin-dependent diabetes mellitus
- the total cost of diabetes in the United States has been estimated at $92 billion annually, including expenditures on medical products, hospitalization and the value of lost work. Substantial costs to both society and its citizens are incurred not only for direct costs of medical care for diabetes, but also for indirect costs, including lost productivity resulting from diabetes-related morbidity and premature mortality. Persons with diabetes are at risk for major complications, including diabetic ketoacidosis, end-stage renal disease, diabetic retinopathy and amputation. There are also a host of less directly related conditions, such as hypertension, heart disease, peripheral vascular disease and infections, for which persons with diabetes are at substantially increased risk. While medications such as injectable insulin and oral hypoglycemics allow diabetics to live longer, diabetes remains the third major killer, after heart disease and cancer.
- Diabetes is also a very disabling disease, because medications do not control blood sugar levels well enough to prevent swinging between high and low blood sugar levels, with resulting damage to the kidneys, eyes, and blood vessels.
- Americans with diabetes have two to five times higher per capita total medical expenditures and per capita out-of-pocket expenses than people without diabetes. These expenses and their associated loss of productivity have impact not only on diabetic patients and their families, but on federal and state governments and society as a whole.
- DCCT Diabetes Control and Complications Trial
- the present invention relates to the stimulation of growth and/or differentiation of various cell types, including, for example, pancreatic cells, by treating said cells with TGF ⁇ therapeutics and pharmaceutical compositions comprising such TGF ⁇ therapeutics.
- the invention also relates to methods for using such proteins, pharmaceutical compositions and therapeutics in culturing cells and tissues such as the pancreatic tissue and cells, and methods for administering such agents to a subject.
- TGF ⁇ therapeutics and pharmaceutical compositions comprising such TGF ⁇ therapeutics include a TGF ⁇ protein.
- TGF ⁇ proteins of the invention comprise proteins of the TGF ⁇ superfamily.
- the protein comprises a polypeptide sequence that is at least 60%, 70%, 80%, 90%, 95%, or 97-99%, identical or homologous to a protein of the TGF ⁇ sub-family.
- the TGF ⁇ therapeutics include within their scope polypeptides that are at least 60%, 70%, 80%, 90%, 95%, or 97- 99%, identical or homologous to a members of the TGF ⁇ subfamily, i.e, polypeptides that are at least at least 60%, 70%, 80%, 90%, 95%, or 97-99%, identical or homologous to TGF ⁇ -1, -2, -3, -4 and -5, represented by SEQ ID Nos 1-5, respectively.
- the TFG ⁇ therapeutic comprises a polypeptide as set forth in SEQ ID Nos: 1- 5.
- the polypeptide is at least 60%, 70%, 80%, 90%, 95%, or 97-99%, identical or homologous to a identical or homologous to TGF ⁇ -2, -3 or -5 represented by SEQ. ID. Nos. 2, 3, or 5 respectively).
- the TFG ⁇ therapeutic comprises a polypeptide as set forth in SEQ ID Nos: 2, 3, or 5. More preferably, the polypeptide is at least 60%, 70%, 80%, 90%, 95%, or 97-99%, identical or homologous to a polypeptide represented by SEQ ID Nos: 7, 8, and 10. In one embodiment, the TFG ⁇ therapeutic comprises a polypeptide as set forth in SEQ ID Nos: 7, 8, and/or 10.
- the polypeptide includes a polypeptide at least 60%, 70%, 80%, 90%, 95%, or 97-99%, identical or homologous to a polypeptide as set forth in SEQ ID Nos: 10-13.
- the TFG ⁇ therapeutic comprises a polypeptide as set forth in SEQ ID Nos: 10-13.
- the TGF ⁇ polypeptides as used herein can comprise a full-length protein, such as represented in SEQ. ID. Nos. 1-10, or may comprise a fragment corresponding to particular motifs/domains. Accordingly, the TGF ⁇ polypeptides comprise at least 25, 50, 100, 150 or 200 amino acids of SEQ ID Nos: 1-13. In preferred embodiments, the polypeptide, or fragment thereof, specifically modulates, by acting as either an agonist or antagonist, the signal transduction activity of a receptor for a TGF ⁇ protein. In particularly preferred embodiments, the TGF ⁇ polypeptide comprises a polypeptide sequence corresponding to the mature, processed portion of a TGF ⁇ subfamily member, shown in SEQ. ID. Nos. 6-10.
- Particularly preferred mature polypeptide sequences are those derived from TGF ⁇ -2, -3 or - 5 (SEQ. ID. Nos. 7, 8 or 10).
- a TGF ⁇ subfamily polypeptide may also have an amino acid sequence greater than 76% homologous to a polypeptide represented by any of SEQ ID Nos: 6-10, though polypeptides with higher sequence homologies of, for example, 80, 85, 90, 95, 98 and 99% or are also contemplated.
- the invention pertains to isolated nucleic acids comprising nucleotide sequences encoding TGF ⁇ polypeptides, and/or equivalents of such nucleic acids.
- nucleic acid as used herein is intended to include fragments as equivalents.
- the term equivalent is understood to include nucleotide sequences encoding functionally equivalent TGF ⁇ polypeptides or functionally equivalent peptides having an activity of a TGF ⁇ protein such as described herein.
- Equivalent nucleotide sequences will include sequences that differ by one or more nucleotide substitutions, additions or deletions, such as allelic variants; and will, therefore, include sequences that differ from the nucleotide sequence encoding the TGF ⁇ cDNA sequences due to the degeneracy of the genetic code. Equivalents will also include nucleotide sequences that hybridize under stringent conditions (i.e., equivalent to about 20-27°C below the melting temperature (T m ) of the DNA duplex formed in about 1M salt) to the nucleotide sequences encoding the polypeptides set forth in SEQ ID Nos: 1-10. In one embodiment, equivalents will further include nucleic acid sequences derived from and evolutionarily related to, a nucleotide sequences encoding polypeptides set forth in SEQ ID Nos: 1-10.
- nucleic acid which hybridizes under high or low stringency conditions to the nucleic acid represented by Genbank Accession Nos. 339547, 339549, 4507464, 2289340, 2289341, 2289342, 2289343, 2289344.
- Appropriate stringency conditions which promote DNA hybridization for example, 6.0 x sodium chloride/sodium citrate (SSC) at about 45°C, followed by a wash of 2.0 x SSC at 50°C, are known to those skilled in the art or can be found in Current Protocols in Molecular Biology, John Wiley & Sons, N.Y. (1989), 6.3.1-6.3.6.
- the salt concentration in the wash step can be selected from a low stringency of about 2.0 x SSC at 50°C to a high stringency of about 0.2 x SSC at 50°C.
- the temperature in the wash step can be increased from low stringency conditions at room temperature, about 22°C, to high stringency conditions at about 65°C.
- Nucleic acids having a sequence that differs from the nucleotide sequences shown in GenBank Accession Nos. 339547, 339549, 4507464, 2289340, 2289341, 2289342, 2289343, 2289344 due to degeneracy in the genetic code are also within the scope of the invention.
- Such nucleic acids encode functionally equivalent peptides (i.e., a peptide having a biological activity of a TGF ⁇ polypeptide) but differ in sequence from the sequence shown in the sequence listing due to degeneracy in the genetic code. For example, a number of amino acids are designated by more than one triplet.
- Codons that specify the same amino acid, or synonyms may result in "silent" mutations which do not affect the amino acid sequence of a TGF ⁇ polypeptide.
- DNA sequence polymorphisms that do lead to changes in the amino acid sequences of the subject TGF ⁇ polypeptides will exist among vertebrates.
- these variations in one or more nucleotides (up to about 3-5% of the nucleotides) of the nucleic acids encoding polypeptides having an activity of a TGF ⁇ polypeptide may exist among individuals of a given species due to natural allelic variation.
- the TGF ⁇ polypeptide of the methods and compositions comprises a TGF ⁇ -5 motif represented in any of the formulas shown in SEQ ID Nos 11-13.
- a TGF ⁇ protein comprises a purified or recombinant polypeptide fragment of a TGF ⁇ protein, which polypeptide has the ability to modulate, e.g., mimic or antagonize, a the activity of a wild-type TGF ⁇ protein.
- the polypeptide fragment comprises a TGF ⁇ -5 motif.
- the preferred TGF ⁇ polypeptide can be an agonist (e.g. mimics) of a biological activity of a naturally occurring form of the protein, e.g., the polypeptide is able to modulate differentiation and/or growth and/or survival of a cell responsive to authentic TGF ⁇ -5 proteins.
- Homologs of the subject TGF ⁇ -5 proteins include versions of the protein which are resistant to post-translation modification, as for example, due to mutations which alter modification sites (such as tyrosine, threonine, serine or aspargine residues), or which inactivate an enzymatic activity associated with the protein.
- the subject proteins can also be provided as chimeric molecules, such as in the form of fusion proteins.
- the TGF ⁇ protein can be provided as a recombinant fusion protein which includes a second polypeptide portion, e.g., a second polypeptide having an amino acid sequence unrelated (heterologous) to the TGF ⁇ polypeptide, e.g. the second polypeptide portion is glutathione-S-transferase, e.g. the second polypeptide portion is an enzymatic activity such as alkaline phosphatase, e.g. the second polypeptide portion is an epitope tag.
- a second polypeptide portion e.g., a second polypeptide having an amino acid sequence unrelated (heterologous) to the TGF ⁇ polypeptide
- the second polypeptide portion is glutathione-S-transferase
- the second polypeptide portion is an enzymatic activity such as alkaline phosphatase
- the invention comprises contacting cells such as the pancreatic duct cells with a TGF ⁇ therapeutic, a composition comprising a TGF ⁇ protein or a cell that produces a TGF ⁇ protein, under conditions sufficient to induce outgrowth tissue such as an outgrowth of the pancreatic duct tissue thereby forming pancreatic and/or endocrine tissue.
- a TGF ⁇ therapeutic a composition comprising a TGF ⁇ protein or a cell that produces a TGF ⁇ protein
- outgrowth tissue such as an outgrowth of the pancreatic duct tissue thereby forming pancreatic and/or endocrine tissue.
- Yet another aspect of the present invention concerns a method for modulating one or more of growth, differentiation, or survival of cells such as pancreatic cells responsive to TGF ⁇ induction.
- the method comprises treating the cell with an effective amount of a TGF ⁇ therapeutic so as to alter, relative to the cell in the absence of TGF ⁇ treatment, at least one of (i) rate of growth, (ii) differentiation, or (iii) survival of the cell.
- the method can be carried out with polypeptides that mimic the effects of a naturally-occurring TGF ⁇ protein on the cell, eg. induce growth or differentiation of pancreatic cells.
- the TGF ⁇ polypeptides provided in the subject method are derived from verterbrate sources, e.g., are vertebrate TGF ⁇ polypeptides.
- preferred polypeptides includes an amino acid sequence identical or homologous to an amino acid sequence (e.g., including bioactive fragments) designated in one of SEQ ID Nos 1-13.
- the present invention contemplates the use of other metazoan (e.g., invertebrate) homologs of the TGF ⁇ polypeptides or bioactive fragments thereof equivalent to the subject vertebrate fragments.
- the present method is applicable, for example, to cells such as pancreatic cell cultures technique, such as in the culturing of pancreatic duct cells whose growth or differentiation can be modulated by TGF ⁇ function.
- the method is practiced for modulating, in an animal, cell growth, cell differentiation or cell survival, and comprises administering a therapeutically effective amount of a TGF ⁇ therapeutic or pharmaceutical preparation to alter, relative to the absence of TGF ⁇ treatment, at least one of (i) rate of growth, (ii) differentiation, or (iii) survival of one or more pancreatic cell-types in the animal.
- the invention features a method for treating a disorder characterized by insufficient insulin activity in a subject, comprising introducing into the subject a pharmaceutical composition comprising a TGF ⁇ protein, a preparation of TGF ⁇ protein-producing cells, or differentiated cells which have been stimulated using TGF ⁇ protein or TGF ⁇ protein-producing cells, and a pharmaceutically acceptable carrier.
- a pharmaceutical composition comprising a TGF ⁇ protein, a preparation of TGF ⁇ protein-producing cells, or differentiated cells which have been stimulated using TGF ⁇ protein or TGF ⁇ protein-producing cells, and a pharmaceutically acceptable carrier.
- the disorder is an insulin-dependent diabetes, e.g., type I diabetes.
- Application of the invention can be used to generate new tissue, such as pancreatic tissue for ex vivo implantation, for example from a sample of the patient's own pancreatic tissue.
- pancreatic tissue removed from the patient is contacted with TGF ⁇ therapeutic, a composition containing TGF ⁇ protein or with cells which secrete TGF ⁇ protein under conditions sufficient to induce outgrowth of the pancreatic tissue thereby forming new pancreatic tissue.
- the new tissue then can be transplanted back into the patient.
- the pancreatic tissue can be activated prior to implantation, for example by application of PYY peptide or an analog or agonist thereof which induces glucose sensitivity in pancreatic tissue.
- the subject is a mammal, e.g., a primate, e.g., a human.
- pharmaceutical preparations of the invention comprise a TGF ⁇ protein and a pharmaceutically acceptable carrier.
- the TGF ⁇ protein preferably comprises a protein at least 76% homologous to SEQ. ID. Nos. 5 or 10.
- pharmaceutical preparations comprise a TGF ⁇ -5 motif as shown in SEQ. ID. Nos. 11-13.
- Figure 1 is the amino acid sequence of the human TGF ⁇ -1 proprotein (Accession # GI 135674; SEQ. ID. No.l).
- Figure 2 is the amino acid sequence of the human TGF ⁇ -2 proprotein (Accession #
- Figure 3 is the amino acid sequence of the human TGF ⁇ -3 proprotein (Accession # GI 135684; SEQ. ID. No. 3).
- Figure 4 is the amino acid sequence of the human TGF ⁇ -4 proprotein (Accession # GI 135674; SEQ. ID. No. 4).
- Figure 5 is the amino acid sequence of the Xenopus laevis TGF ⁇ -5 proprotein (Accession # GI 135674; SEQ. ID. No. 5).
- Figure 6 is the amino acid sequence of the mature human TGF ⁇ -1 protein (SEQ. ID.
- Figure 7 is the amino acid sequence of the mature human TGF ⁇ -2 protein (SEQ. ID. No. 7).
- Figure 8 is the amino acid sequence of the mature human TGF ⁇ -3 protein (SEQ. ID. No. 8).
- Figure 9 is the amino acid sequence of the mature human TGF ⁇ -4 protein (SEQ. ID. No. 9).
- Figure 10 is the amino acid sequence of the mature X. laevis TGF ⁇ -5 protein (SEQ. ID. No. 10).
- Figure 11 shows TGF ⁇ -5 motifs (SEQ. ID. Nos. 11-13).
- Figure 12 shows an alignment of human TGF ⁇ -1, -2 and -3 proteins with TGF ⁇ -5 from X. laevis.
- Figure 13 is a graph showing growth stimulation of rat pancreatic ductal explants treated with TGF ⁇ proteins.
- Figure 14 is a graph showing growth stimulation of mouse pancreatic ductal explants treated with TGF ⁇ proteins.
- Figure 15 is a graph showing expansion of PDX-1/LacZ expressing cells in mouse pancreatic ductal explants treated with TGF ⁇ proteins.
- Figure 16 shows staining for LacZ expression in PDX-1/LacZ ductal explants treated with TGF ⁇ proteins.
- Figure 17 is a graph showing body weights of TGF ⁇ treated mice.
- Figure 20 is a graph showing blood glucose concentrations in fasting TGF ⁇ treated mice.
- FIG 21 is a graph showing plasma insulin concentrations in fasting TGF ⁇ treated mice.
- Figure 22 shows proliferation in the common pancreatic duct was determined by 5- bromo-2'-deoxyuridine (BrdU) incorporation in TGF ⁇ treated cells. Insulin staining is also shown.
- FIG 23 shows the pancreatic islet area in the TGF ⁇ 3 and TGF ⁇ 5 treated mice. Pancreatic sections from vehicle and TGF ⁇ treated mice sacrificed on day 5 were co-stained for insulin and glucagon.
- animal refers to mammals, preferably mammals such as humans.
- a "patient” or “subject” to be treated by the method of the invention can mean either a human or non-human animal.
- the term "cellular composition” refers to a preparation of cells, which preparation may include, in addition to the cells, non-cellular components such as cell culture media, e.g. proteins, amino acids, nucleic acids, nucleotides, co-enzyme, anti- oxidants, metals and the like. Furthermore, the cellular composition can have components which do not affect the growth or viability of the cellular component, but which are used to provide the cells in a particular format, e.g., as polymeric matrix for encapsulation or a pharmaceutical preparation. A cellular composition may also include a tissue sample such as a pancreatic duct explant.
- a “chimeric protein” or “fusion protein” is a fusion of a first amino acid sequence encoding one of the subject TGF ⁇ polypeptides with a second amino acid sequence defining a domain (e.g. polypeptide portion) foreign to and not substantially homologous with any domain of one of the TGF ⁇ proteins.
- a chimeric protein may present a foreign domain which is found (albeit in a different protein) in an organism which also expresses the first protein, or it may be an "interspecies", “intergenic”, etc. fusion of protein structures expressed by different kinds of organisms.
- a fusion protein can be represented by the general formula X- TGF ⁇ protein-Y, wherein TGF ⁇ protein represents a portion of the protein which is derived from one of the vertebrate TGF ⁇ protein proteins, and X and Y are independently absent or represent amino acid sequences which are not related to one of the TGF ⁇ protein sequences in an organism, including naturally occurring mutants.
- tissue culture refers to the maintenance or growth of tissue, e.g., explants of organ primordia or of an adult organ in vitro so as to preserve its architecture and function.
- a "cell culture” refers to a growth of cells in vitro; although the cells proliferate they do not organize into tissue per se.
- Tissue and cell culture preparations of micro-organ explants and amplified progenitor cell populations used herein can take on a variety of formats. For instance, a "suspension culture” refers to a culture in which cells multiply while suspended in a suitable medium.
- a “continuous flow culture” refers to the cultivation of cells or ductal explants in a continuous flow of fresh medium to maintain cell growth, e.g. viability.
- the terms “explant” and “micro-organ explant” refer to a portion of an organ taken from the body and grown in an artificial medium.
- Homology refers to sequence similarity between two peptides or between two nucleic acid molecules. Homology can be determined by comparing a position in each sequence which may be aligned for purposes of comparison. When a position in the compared sequence is occupied by the same base or amino acid, then the molecules are homologous at that position. A degree of homology between sequences is a function of the number of matching or homologous positions shared by the sequences. An "unrelated" or “non-homologous" sequence shares less than 40 percent identity, though preferably less than 25 percent identity, with one of the vertebrate TGF ⁇ sequences of the present invention.
- lineage committed cell refers to a progenitor cell that is no longer pluripotent but has been induce to differentiate into a specific cell type, e.g., a pancreatic, hepatic or intestinal cell.
- organ refers to two or more adjacent layers of tissue, which layers of tissue maintain some form of cell-cell and/or cell-matrix interaction to form a microarchitecture.
- pancreas is art recognized, and refers generally to a large, elongated, racemose gland situated transversely behind the stomach, between the spleen and duodenum.
- the pancreatic exocrine function e.g., external secretion, provides a source of digestive enzymes.
- pancreatin refers to a substance from the pancreas containing enzymes, principally amylase, protease, and lipase, which substance is used as a digestive aid.
- the exocrine portion is composed of several serous cells surrounding a lumen.
- These cells synthesize and secrete digestive enzymes such as trypsinogen, chymotrypsinogen, carboxypeptidase, ribonuclease, deoxyribonuclease, triacylglycerol lipase, phospholipase A2, elastase, and amylase.
- digestive enzymes such as trypsinogen, chymotrypsinogen, carboxypeptidase, ribonuclease, deoxyribonuclease, triacylglycerol lipase, phospholipase A2, elastase, and amylase.
- the endocrine portion of the pancreas is composed of the islets of Langerhans.
- the islets of Langerhans appear as rounded clusters of cells embedded within the exocrine pancreas.
- the ⁇ cells constitute about 20% of the cells found in pancreatic islets and produce the hormone glucagon.
- Glucagon acts on several tissues to make energy available in the intervals between feeding. In the liver, glucagon causes breakdown of glycogen and promotes gluconeogenesis from amino acid precursors.
- the ⁇ cells produce somatostatin which acts in the pancreas to inhibit glucagon release and to decrease pancreatic exocrine secretion.
- pancreatic polypeptide is produced in the ⁇ cells. This hormone inhibits pancreatic exocrine secretion of bicarbonate and enzymes, causes relaxation of the gallbladder, and decreases bile secretion.
- the major target organs for insulin are the liver, muscle, and fat-organs specialized for storage of energy.
- pancreatic progenitor cell refers to a cell which can differentiate into a cell of pancreatic lineage, e.g. a cell which can produce a hormone or enzyme normally produced by a pancreatic cell.
- a pancreatic progenitor cell may be caused to differentiate, at least partially, into ⁇ , ⁇ , ⁇ , or ⁇ islet cell, or a cell of exocrine fate.
- the pancreatic progenitor cells of the invention can also be cultured prior to administration to a subject under conditions which promote cell proliferation and differentiation. These conditions include culturing the cells to allow proliferation and confluence in vitro at which time the cells can be made to form pseudo islet-like aggregates or clusters and secrete insulin, glucagon, and somatostatin.
- the present invention comprises a factor or factors which stimulate outgrowth of pancreatic duct tissue. These outgrowths were not simply spreading of existing cells (i.e., characterized by BrdU staining), the new material is pancreatic/endocrine in nature (i.e., characterized by PDX-1 staining).
- progenitor cell refers to an undifferentiated cell which is capable of proliferation and giving rise to more progenitor cells having the ability to generate a large number of mother cells that can in turn give rise to differentiated, or differentiable daughter cells.
- progenitor cell is also intended to encompass a cell which is sometimes referred to in the art as a "stem cell”.
- progenitor cell refers to a generalized mother cell whose descendants (progeny) specialize, often in different directions, by differentiation, e.g., by acquiring completely individual characters, as occurs in progressive diversification of embryonic cells and tissues.
- recombinant protein refers to a polypeptide of the present invention which is produced by recombinant DNA techniques, wherein generally, DNA encoding a vertebrate TGF ⁇ polypeptide is inserted into a suitable expression vector which is in turn used to transform a host cell to produce the heterologous protein.
- the phrase "derived from”, with respect to a recombinant TGF ⁇ gene is meant to include within the meaning of "recombinant protein” those proteins having an amino acid sequence of a native TGF ⁇ protein, or an amino acid sequence similar thereto which is generated by mutations including substitutions and deletions (including truncation) of a naturally occurring form of the protein.
- the term "substantially pure”, with respect to collections of cells, refers to a population of cells that is at least about 75%, preferably at least about 85%, more preferably at least about 90%, and most preferably at least about 95% pure, with respect to a type of cell making up a total cell population.
- the term “substantially pure” refers to a population of cells of the present invention that contain fewer than about 20%, more preferably fewer than about 10%, most preferably fewer than about 5%, of lineage committed cells in the original unamplified and isolated population prior to subsequent culturing.
- tissue refers to a group or layer of similarly specialized cells which together perform certain special functions.
- the term “transfection” means the introduction of a nucleic acid, e.g., an expression vector, into a recipient cell by nucleic acid-mediated gene transfer.
- "Transformation” refers to a process in which a cell's genotype is changed as a result of the cellular uptake of exogenous DNA or RNA, and, for example, the transformed cell expresses a recombinant form of a vertebrate TGF ⁇ polypeptide or, where anti-sense expression occurs from the transferred gene, the expression of a naturally- occurring form of the TGF ⁇ protein is disrupted.
- TGF ⁇ protein denotes a family of structurally related paracrine polypeptides found ubiquitously in vertebrates, and prototypic of a large family of metazoan growth, differentiation, and morphogenesis factors (see, for review, Massaque et al. (1990) Ann Rev Cell Biol 6:597-641; Massaque et al. (1994) Trends Cell Biol. 4:172-178; Kingsley (1994) o Gene Dev. 8:133-146; and Sporn et al. (1992) J Cell Biol 119: 1017-1021).
- the TGF ⁇ superfamily has at least 25 members, and can be grouped into distinct sub-families with highly related sequences.
- the most obvious sub-families include the following: the TGF ⁇ sub-family, which comprises at least five members (TGF ⁇ -1, -2, - 3, -4, -5) that are much more similar to TGF ⁇ -1 than to other members of the TGF ⁇ s superfamily; the activin sub-family, comprising homo- or hetero-dimers or two sub-units, inhibin ⁇ -A and inhibin ⁇ -B.
- the decapentaplegic sub-family which includes the mammalian factors BMP2 and BMP4, which can induce the formation of ectopic bone and cartilage when implanted under the skin or into muscles.
- the 60A sub-family which includes a number of mammalian homologs, with osteoinductive activity, including BMP5- 0 8.
- Other members of the TGF ⁇ superfamily include the gross differentiation factor 1 (GDF- 1), GDF-3NGR-2, dorsalin, nodal, mullerian-inhibiting substance (MIS), and glial-derived neurotrophic growth factor (GDNF).
- TGF ⁇ as used throughout this specification will be understood to generally refer to members of the TGF ⁇ superfamily as appropriate. Reference to members of the TGF ⁇ subfamily will be explicit, or evidenced from the context in which the term TGF ⁇ is used.
- TGF ⁇ protein is also understood to encompass other molecules that are related in o sequence homology or are bioactive fragments of a TGF ⁇ superfamily member.
- TGF ⁇ therapeutic is any compound or mixture of compounds that can stimulate the growth and or differentiation of pancreatic cells in a manner similar to TGF ⁇ -2, -3 or -5.
- Exemplary "TGF ⁇ therapeutics” encompass TGF ⁇ proteins, including but not limited to polypeptides that are at least 60%, 70% 80%, 90%, 95%, or 97-99% identical to polypeptides represented by SEQ ID Nos: 1 -5 and fragments thereof; more preferably these therapeutics include polypeptides that are at least 60%, 70% 80%, 90%, 95%, or 97-99% identical to polypeptides represented by SEQ ID Nos: 7, 8, 10, and fragments thereof; and most preferably they include polypeptides that are at least 60%, 70% 80%, 90%, 95%, or 97-99% identical to polypeptides represented by SEQ ID Nos: 10- 13 and fragments thereof that have the appropriate activity.
- TGF ⁇ therapeutics includes within its scope agonists, small molecules, etc. that
- the present invention comprises contacting cells such as the pancreatic cells in vivo or in vitro with a TGF ⁇ therapeutic or protein or cells expressing TGF ⁇ protein as described below.
- TGF ⁇ superfamily is an important class of molecules involved in cell-cell signaling and development in a wide range of organisms and cell types. Members of the family are initially synthesized as larger precursor molecules with an amino-terminal signal sequence and a pro-domain of varying size (Kingsley, D.M. (1994) Genes Dev. 8: 133-146). The precursor is then cleaved to release a mature carboxy-terminal segment of 110-140 amino acids.
- the active signaling moiety is comprised of hetero- or homodimers of the carboxy-terminal segment (Massague, J. (1990) Annu. Rev. Cell Biol. 6:597-641).
- the active form of the molecule then interacts with its receptor, which for this family of molecules is composed of two distantly related transmembrane serine/threonine kinases called type I and type II receptors (Massague, J. et al. (1992) Cell 69: 1067-1070; Miyazono, K. A. et al. EMBO J. 10: 1091-1101).
- TGF ⁇ binds directly to the type II receptor, which then recruits the type I receptor and modifies it by phosphorylation.
- the type I receptor then transduces the signal to downstream components, which are as yet unidentified (Wrana et al, (1994) Nature 370:341-347).
- members of the TGF ⁇ superfamily have a set of nine highly conserved cysteine residues that are involved in disulfide bonding both within and between monomers of the mature, dimerized signaling protein (Griffith et al. (1996) PNAS 93: 878- 883; Luo et al. (1995) RN ⁇ S 92: 11761-11765; Schlunegger et al. (1993) J Mol Biol. 231 : 445-58; Daopin et al.
- Dorsalin is expressed preferentially in the dorsal side of the developing chick neural tube (Basler et al. (1993)Ce/7 73:687-702) and plays an important role in neural patterning along the dorsoventral axis.
- Certain of the bone morphogenetic proteins (BMPs) can induce the formation of ectopic bone and cartilage when implanted under the skin or into muscles (Wozney, J.M. et al. (1988) Sc/e/zce
- BMP5 In mice, mutations in BMP5 have been found to result in effects on many different skeletal elements, including reduced external ear size and decreased repair of bone fractures in adults (Kingsley (1994) Genes Dev. 8: 133-146). Besides these effects on bone tissue, BMPs play other roles during normal development. For example, they are expressed in non skeletal tissues (Lyons et al. (1990) Development 109:833-844), and injections of BMP4 into developing Xenopus embryos promote the formation of ventral/posterior mesoderm (Dale et al (1992) Development 115:573-585). A role for TGF ⁇ family members in the development of sex organs has also been described.
- TGF ⁇ can also promote the growth of other cell types as evidenced by its role in neovascularization and the proliferation of connective tissue cells. Because of these activities, it plays a key role in wound healing (Kovacs, E.j. (1991) Immunol Today 12:17-23).
- TGF ⁇ polypeptides of the invention can comprise essentially any member of the TGF ⁇ superfamily.
- a TGF ⁇ polypeptide comprises a vertebrate member of the TGF ⁇ superfamily.
- TGF ⁇ polypeptides may also comprise members of the TGF ⁇ subfamily.
- the TGF ⁇ polypeptide comprises a polypeptide that is at least 60%, 70%, 80%, 90%, 95%, or 97-99% identical or homologous to a polypeptide as set forth in any one of SEQ, ID. Nos. 1-10.
- a TGF ⁇ polypeptide comprises a TGF ⁇ -5 motif as shown in SEQ. ID. Nos. 11-13.
- TGF ⁇ polypeptides which function in a limited capacity as a TGF ⁇ agonist (mimetic), in order to promote only a subset of the biological activities of the naturally-occurring form of the protein.
- TGF ⁇ agonist mimetic
- Homologs of each of the subject TGF ⁇ proteins can be generated by mutagenesis, such as by discrete point mutation(s), or by truncation. For instance, mutation can give rise to homologs which retain substantially the same, or merely a subset, of the biological activity of the TGF ⁇ polypeptide from which it was derived.
- polypeptides referred to herein as having an activity (e.g., are "bioactive") of a TGF ⁇ protein are defined as polypeptides which include an amino acid sequence corresponding (e.g., identical or homologous) to all or a portion of the amino acid sequences of a TGF ⁇ proteins or motif shown in any one or more of SEQ ID NOs: 1-11 and which mimic all or a portion of the biological/biochemical activities of a naturally occurring TGF ⁇ protein.
- biological activity include the ability to induce (or otherwise modulate) proliferation and/or differentiation of pancreatic cells in vivo or in vitro.
- the bioactivity of the subject TGF ⁇ proteins may also include the ability to alter the transcriptional rate of a gene, such as by participating in the transcriptional complexes (activating or inhibiting), e.g., either homo- or hetero-oligomeric in composition, or by altering the composition of a transcriptional complex by modfiying the competency and/or availability of proteins of the complex.
- the TGF ⁇ gene products may also be involved in regulating post-translational modification of other cellular proteins, e.g., by action of an intrinsic enzymatic activity, or as a regulatory subunit of an enzyme complex, and/or as a chaperon.
- Yet another bioactivity of the subject TGF ⁇ protein is the ability to interact with a TGF ⁇ receptor complex, or a subunit thereof, particularly a receptor complex having a ligand bound thereto.
- a polypeptide has biological activity if it is a specific agonist or antagonist of a naturally- occurring form of a vertebrate TGF ⁇ protein.
- Methods of producing the subject TGF ⁇ polypeptides are well known in the art.
- a host cell transfected with a nucleic acid vector directing expression of a nucleotide sequence encoding the subject polypeptides can be cultured under appropriate conditions to allow expression of the peptide to occur.
- the cells may be harvested, lysed and the protein isolated.
- a cell culture includes host cells, media and other byproducts. Suitable media for cell culture are well known in the art.
- the recombinant TGF ⁇ polypeptide can be isolated from cell culture medium, host cells, or both using techniques known in the art for purifying proteins including ion-exchange chromatography, gel filtration chromatography, ultrafiltration, electrophoresis, and immunoaff ⁇ nity purification with antibodies specific for such peptide.
- the recombinant TGF ⁇ polypeptide is a fusion protein containing a domain which facilitates its purification, such as GST fusion protein or poly (His) fusion protein.
- This invention also pertains to a host cell transfected to express a recombinant form of the subject TGF ⁇ polypeptides.
- the host cell may be any prokaryotic or eukaryotic cell.
- a nucleotide sequence derived from the cloning of vertebrate TGF ⁇ genes, encoding all or a selected portion of the full-length protein can be used to produce a recombinant form of a vertebrate TGF ⁇ polypeptide via microbial or eukaryotic cellular processes.
- hosts either eukaryotic (yeast, avian, insect or mammalian) or prokaryotic (bacterial cells) are standard procedures used in producing other well-known proteins, e.g. MAP kinase, p53, WT1, PTP phosphotases, SRC, and the like. Similar procedures, or modifications thereof, can be employed to prepare recombinant TGF ⁇ polypeptides
- Recombinant TGF ⁇ genes can be produced by ligating nucleic acid encoding a TGF ⁇ protein, or a portion thereof, into a vector suitable for expression in either prokaryotic cells, eukaryotic cells, or both.
- Expression vectors for production of recombinant forms of the subject TGF ⁇ polypeptides include plasmids and other vectors.
- suitable vectors for the expression of a TGF ⁇ polypeptide include plasmids of the types: pBR322-derived plasmids, pEMBL-derived plasmids, pEX-derived plasmids, pBTac-derived plasmids and pUC-derived plasmids for expression in prokaryotic cells, such as E. coll
- YEP24, YIP5, YEP51, YEP52, pYES2, and YRP17 are cloning and expression vehicles useful in the introduction of genetic constructs into S. cerevisiae (see, for example, Broach et al. (1983) in Experimental Manipulation of Gene Expression, ed. M. Inouye Academic Press, p. 83, incorporated by reference herein).
- These vectors can replicate in E. coli due the presence of the pBR322 ori, and in S. cerevisiae due to the replication determinant of the yeast 2 micron plasmid.
- drug resistance markers such as ampicillin can be used.
- a TGF ⁇ polypeptide is produced recombinantly utilizing an expression vector generated by sub-cloning the coding sequence of one of the TGF ⁇ genes encoding the polypeptides represented in SEQ ID Nos: 1-13.
- the preferred mammalian expression vectors contain both prokaryotic sequences, to facilitate the propagation of the vector in bacteria, and one or more eukaryotic transcription units that are expressed in eukaryotic cells.
- the pcDNAI/amp, pcDNAI/neo, pRc/CMV, pSV2gpt, pSV2neo, pSV2-dhfr, pTk2, pRSVneo, pMSG, pSVT7, pko-neo and pHyg derived vectors are examples of mammalian expression vectors suitable for transfection of eukaryotic cells.
- vectors are modified with sequences from bacterial plasmids, such as pBR322, to facilitate replication and drug resistance selection in both prokaryotic and eukaryotic cells.
- derivatives of viruses such as the bovine papillomavirus (BPV-1), or Epstein-Barr virus (pHEBo, pREP-derived and p205) can be used for transient expression of proteins in eukaryotic cells.
- BBV-1 bovine papillomavirus
- pHEBo Epstein-Barr virus
- the various methods employed in the preparation of the plasmids and transformation of host organisms are well known in the art.
- suitable expression systems for both prokaryotic and eukaryotic cells, as well as general recombinant procedures see Molecular Cloning A Laboratory Manual, 2nd Ed., ed.
- baculovirus expression systems include pVL-derived vectors (such as pVL1392, pVL1393 and pVL941), pAcUW-derived vectors (such as pAcUWl), and pBlueBac-derived vectors (such as the ⁇ -gal containing pBlueBac III).
- a start codon AGT
- MAP methionine aminopeptidase
- the present invention further pertains to methods of producing the subject TGF ⁇ polypeptides.
- a host cell transfected with a nucleic acid vector directing expression of a nucleotide sequence encoding the subject TGF ⁇ polypeptide can be cultured under appropriate conditions to allow expression of the peptide to occur.
- the peptide may be secreted and isolated from a mixture of cells and medium containing the recombinant TGF ⁇ polypeptide.
- the peptide may be retained cytoplasmically by removing the signal peptide sequence from the recombinant TGF ⁇ gene and the cells harvested, lysed and the protein isolated.
- a cell culture includes host cells, media and other byproducts. Suitable media for cell culture are well known in the art.
- the recombinant TGF ⁇ polypeptide can be isolated from cell culture medium, host cells, or both using techniques known in the art for purifying proteins including ion-exchange chromatography, gel filtration chromatography, ultrafiltration, electrophoresis, and immunoaffinity purification with antibodies specific for such peptide.
- the recombinant TGF ⁇ polypeptide is a fusion protein containing a domain which facilitates its purification, such as a TGF ⁇ /GST fusion protein.
- the coding sequences for the polypeptide can be incorporated as a part of a fusion gene including a nucleotide sequence encoding a different polypeptide.
- This type of expression system can be useful under conditions where it is desirable to produce an immunogenic fragment of a TGF ⁇ protein.
- the NP6 capsid protein of rotavirus can be used as an immunologic carrier protein for portions of the TGF ⁇ polypeptide, either in the monomeric form or in the form of a viral particle.
- the nucleic acid sequences corresponding to the portion of a subject TGF ⁇ protein to which antibodies are to be raised can be incorporated into a fusion gene construct which includes coding sequences for a late vaccinia virus structural protein to produce a set of recombinant viruses expressing fusion proteins comprising TGF ⁇ epitopes as part of the virion. It has been demonstrated with the use of immunogenic fusion proteins utilizing the Hepatitis B surface antigen fusion proteins that recombinant Hepatitis B virions can be utilized in this role as well.
- chimeric constructs coding for fusion proteins containing a portion of a TGF ⁇ protein and the poliovirus capsid protein can be created to enhance immunogenicity of the set of polypeptide antigens (see, for example, EP Publication No: 0259149; and Evans et al. (1989) Nature 339:385; Huang et al. (1988) J Virol. 62:3855; and Schlienger et al. (1992) J Virol. 66:2).
- TGF ⁇ polypeptides can be generated as glutathione-S- transferase (GST-fusion) proteins.
- GST-fusion proteins can enable easy purification of the TGF ⁇ polypeptide, as for example by the use of glutathione-derivatized matrices (see, for example, Current Protocols in Molecular Biology, eds. Ausubel et al. (N.Y.: John Wiley & Sons, 1991)).
- a fusion gene coding for a purification leader sequence such as a poly-(His)/enterokinase cleavage site sequence at the N-terminus of the desired portion of the recombinant protein, can allow purification of the expressed fusion protein by affinity chromatography using a Ni2+ metal resin.
- the purification leader sequence can then be subsequently removed by treatment with enterokinase to provide the purified protein (e.g., see Hochuli et al. (1987) J Chromatography 411 : 177; and janknecht et al. PNAS 88:8972).
- Fusions to Green Fluorescent Protein (GFP) and variants thereof eg. yellow, cyan, red and blue variants known as YFP, CFP, RFP, and BFP respectively).
- fusion genes are known to those skilled in the art. Essentially, the joining of various DNA fragments coding for different polypeptide sequences is performed in accordance with conventional techniques, employing blunt-ended or stagger-ended termini for ligation, restriction enzyme digestion to provide for appropriate termini, filling-in of cohesive ends as appropriate, alkaline phosphatase treatment to avoid undesirable joining, and enzymatic ligation.
- the fusion gene can be synthesized by conventional techniques including automated DNA synthesizers.
- PCR amplification of gene fragments can be carried out using anchor primers which give rise to complementary overhangs between two consecutive gene fragments which can subsequently be annealed to generate a chimeric gene sequence (see, for example, Current Protocols in Molecular Biology, eds. Ausubel et al. John Wiley & Sons: 1992).
- TGF ⁇ polypeptides may also be chemically modified to create TGF ⁇ derivatives by forming covalent or aggregate conjugates with other chemical moieties, such as glycosyl groups, lipids, phosphate, acetyl groups and the like.
- Covalent derivatives of TGF ⁇ proteins can be prepared by linking the chemical moieties to functional groups on amino acid sidechains of the protein or at the N-terminus or at the C-terminus of the polypeptide.
- the present invention also makes available isolated TGF ⁇ polypeptides which are isolated from, or otherwise substantially free of other cellular proteins, especially other signal transduction factors and/or transcription factors which may normally be associated with the TGF ⁇ polypeptide.
- substantially free of other cellular proteins also referred to herein as "contaminating proteins”
- substantially pure or purified preparations are defined as encompassing preparations of TGF ⁇ polypeptide polypeptides having less than 20% (by dry weight) contaminating protein, and preferably having less than 5% contaminating protein.
- Functional forms of the subject polypeptides can be prepared, for the first time, as purified preparations by using a cloned gene as described herein.
- purified it is meant, when referring to a peptide or DNA or RNA sequence, that the indicated molecule is present in the substantial absence of other biological macromolecules, such as other proteins.
- purified as used herein preferably means at least 80% by dry weight, more preferably in the range of 95-99% by weight, and most preferably at least 99.8% by weight, of biological macromolecules of the same type present (but water, buffers, and other small molecules, especially molecules having a molecular weight of less than 5000, can be present).
- pure as used herein preferably has the same numerical limits as “purified” immediately above. "Isolated” and “purified” do not encompass either natural materials in their native state or natural materials that have been separated into components (e.g., in an acrylamide gel) but not obtained either as pure (e.g.
- purified TGF ⁇ preparations will lack any contaminating proteins from the same animal from that TGF ⁇ is normally produced, as can be accomplished by recombinant expression of, for example, a human TGF ⁇ protein in a non-human cell.
- Isolated peptidyl portions of TGF ⁇ proteins can be obtained by screening peptides recombinantly produced from the corresponding fragment of the nucleic acid encoding such peptides.
- fragments can be chemically synthesized using techniques known in the art such as conventional Merrifield solid phase f-Moc or t-Boc chemistry.
- a TGF ⁇ polypeptide polypeptide of the present invention may be arbitrarily divided into fragments of desired length with no overlap of the fragments, or preferably divided into overlapping fragments of a desired length. The fragments can be produced (recombinantly or by chemical synthesis) and tested to identify those peptidyl fragments which can function to promote growth or differentiation of pancreatic tissue.
- the recombinant TGF ⁇ polypeptides of the present invention also include homologs of the authentic TGF ⁇ proteins, such as versions of those proteins that are resistant to proteolytic cleavage, as for example, due to mutations that alter ubiquitination or other enzymatic targeting associated with the protein.
- Modification of the structure of the subject vertebrate TGF ⁇ polypeptides can be for such purposes as enhancing therapeutic or prophylactic efficacy, stability (e.g., ex vivo shelf life and resistance to proteolytic degradation in vivo), or post-translational modifications (e.g., to alter phosphorylation pattern of protein).
- Such modified peptides when designed to retain at least one activity of the naturally-occurring form of the protein, or to produce specific antagonists thereof, are considered functional equivalents of the TGF ⁇ polypeptides described in more detail herein.
- Such modified peptides can be produced, for instance, by amino acid substitution, deletion, or addition.
- Whether a change in the amino acid sequence of a peptide results in a functional TGFb homolog can be readily determined by assessing the ability of the variant peptide to produce a response in cells in a fashion similar to the wild-type protein, or competitively inhibit such a response.
- Polypeptides in which more than one replacement has taken place can readily be tested in the same manner.
- This invention further contemplates a method for generating sets of combinatorial mutants of the subject TGF ⁇ proteins as well as truncation mutants, and is especially useful for identifying potential variant sequences (e.g. homologs) that are functional in modulating signal transduction from a TGF ⁇ receptor.
- the purpose of screening such combinatorial libraries is to generate, for example, novel TGF ⁇ homologs which can affect, eg. pancreatic cell proliferation and/or differentiation.
- Combinatorially- derived homologs can be generated to have an increased potency relative to a naturally occurring form of the protein.
- the amino acid sequences for a population of TGF ⁇ homologs or other related proteins are aligned, preferably to promote the highest homology possible ( Figure 12).
- a population of variants can include, for example, TGF ⁇ homologs from one or more species.
- Amino acids which appear at each position of the aligned sequences are selected to create a degenerate set of combinatorial sequences.
- the variegated library of TGF ⁇ variants is generated by combinatorial mutagenesis at the nucleic acid level, and is encoded by a variegated gene library.
- a mixture of synthetic oligonucleotides can be enzymatically ligated into gene sequences such that the degenerate set of potential TGF ⁇ sequences are expressible as individual polypeptides, or alternatively, as a set of larger fusion proteins (e.g. for phage display) containing the set of TGF ⁇ sequences therein.
- TGF ⁇ -5 and human TGF ⁇ -1, -2 and -3 can be used to produce a degenerate set of polypeptides that share features distinctive of TGF ⁇ proteins but also properties unique to TGF ⁇ -5 polypeptides.
- TGF ⁇ -5 motifs are shown in Figure 11 (SEQ. ID. Nos. 11-13).
- a set of 9 conserved cysteine residues at fixed positions are sufficient to define a subset of TGF ⁇ proteins to which TGF ⁇ -5 belongs.
- the additional constraint of, for example, requiring a charged amino acid at positions shown in SEQ. ID. No. 12 creates a motif that is specific for TGF ⁇ -5 and excludes all other currently known TGF ⁇ proteins.
- libraries of potential TGF ⁇ homologs can be generated from a degenerate oligonucleotide sequence.
- Chemical synthesis of a degenerate gene sequence can be carried out in an automatic DNA synthesizer, and the synthetic genes then ligated into an appropriate expression vector.
- the purpose of a degenerate set of genes is to provide, in one mixture, all of the sequences encoding the desired set of potential TGF ⁇ sequences.
- the synthesis of degenerate oligonucleotides is well known in the art (see for example, Narang, SA (1983) Tetrahedron 39:3; Itakura et al. (1981) Recombinant DNA, Proc 3rd Cleveland Sympos. Macromolecules, ed.
- a library of coding sequence fragments can be generated by (i) treating a double stranded PCR fragment of a TGF ⁇ coding sequence with a nuclease under conditions wherein nicking occurs only about once per molecule; (ii) denaturing the double stranded DNA; (iii) renaturing the DNA to form double stranded DNA which can include sense/antisense pairs from different nicked products; (iv) removing single stranded portions from reformed duplexes by treatment with SI nuclease; and (v) ligating the resulting fragment library into an expression vector.
- an expression library can be derived which codes for N-terminal, C-terminal and internal fragments of various sizes.
- a wide range of techniques are known in the art for screening gene products of combinatorial libraries made by point mutations or truncation, and for screening cDNA libraries for gene products having a certain property. Such techniques will be generally adaptable for rapid screening of the gene libraries generated by the combinatorial mutagenesis of TGF ⁇ homologs.
- the most widely used techniques for screening large gene libraries typically comprises cloning the gene library into replicable expression vectors, transforming appropriate cells with the resulting library of vectors, and expressing the combinatorial genes under conditions in which detection of a desired activity facilitates relatively easy isolation of the vector encoding the gene whose product was detected.
- Each of the illustrative assays described below are amenable to high through-put analysis as necessary to screen large numbers of degenerate TGF ⁇ sequences created by combinatorial mutagenesis techniques.
- Combinatorial mutagenesis has a potential to generate very large libraries of mutant proteins, e.g., in the order of 10 ⁇ molecules. Combinatorial libraries of this size may be technically challenging to screen even with high throughput screening assays.
- recrusive ensemble mutagenesis REM
- REM recrusive ensemble mutagenesis
- REM is an algorithm which enhances the frequency of functional mutants in a library when an appropriate selection or screening method is employed (Arkin and Yourvan, 1992, PNAS USA 89:7811-7815; Yourvan et al., 1992, Parallel Problem Solving from Nature, 2., In Maenner and Manderick, eds., Elsevir Publishing Co., Amsterdam, pp. 401-410; Delgrave et al., 1993, Protein Engineering 6(3):327-331).
- Mutagenic techniques as described above are also useful to map the determinants of the TGF ⁇ proteins which participate in protein-protein interactions involved in, for example, binding of the subject TGF ⁇ polypeptide to proteins which may function upstream (including both activators and repressors of its activity) or to proteins or nucleic acids which may function downstream of the TGF ⁇ polypeptide, whether they are positively or negatively regulated by it.
- the critical residues of a subject TGF ⁇ polypeptide which are involved in molecular recognition of an upstream or downstream TGF ⁇ component can be determined and used to generate TGF ⁇ -derived peptidomimetics which competitively inhibit binding of the authentic TGF ⁇ protein with that moiety.
- peptidomimetic compounds By employing, for example, scanning mutagenesis to map the amino acid residues of each of the subject TGF ⁇ proteins which are involved in binding other extracellular proteins, peptidomimetic compounds can be generated which mimic those residues of the TGF ⁇ protein which facilitate the interaction. Such mimetics may then be used to interfere with the normal function of a TGF ⁇ protein.
- non-hydrolyzable peptide analogs of such residues can be generated using benzodiazepine (e.g., see Freidinger et al. in Peptides: Chemistry and Biology, G.R. Marshall ed., ESCOM Publisher: Leiden, Netherlands, 1988), azepine (e.g., see Huffman et al.
- the present invention facilitates the development of assays which can be used to screen for molecules that may be useful as TGF ⁇ therapeutics, including TGF ⁇ homologs, which are either agonists or antagonists of the normal cellular function of the subject TGF ⁇ polypeptides, or of their role in the pathogenesis of cellular differentiation and/or proliferation and disorders related thereto.
- the assay evaluates the ability of a compound to modulate binding between a TGF ⁇ polypeptide and a molecule, be it protein or DNA, that interacts either upstream or downstream of the TGF ⁇ polypeptide in the TGF ⁇ signaling pathway.
- the assay can be used to identify compounds which either inhibit or potentiate the interaction of a TGF ⁇ polypeptide with a TGF ⁇ receptor complex or subunit thereof.
- assay formats will suffice and, in light of the present inventions, will be comprehended by a skilled artisan.
- the compound of interest is contacted with proteins which may function upstream (including both activators and repressors of its activity) or to proteins or nucleic acids which may function downstream of the TGF ⁇ polypeptide, whether they are positively or negatively regulated by it.
- proteins which may function upstream including both activators and repressors of its activity
- proteins or nucleic acids which may function downstream of the TGF ⁇ polypeptide, whether they are positively or negatively regulated by it.
- To the mixture of the compound and the upstream or downstream element is then added a composition containing a TGF ⁇ polypeptide. Detection and quantification of complexes of TGF ⁇ with it's upstream or downstream elements provide a means for determining a compound's efficacy at inhibiting (or potentiating) complex formation between TGF ⁇ and the TGF ⁇ -binding elements.
- the efficacy of the compound can be assessed by generating dose response curves from data obtained using various concentrations of the test compound.
- a control assay can also be performed to provide a baseline for comparison.
- isolated and purified TGF ⁇ polypeptide is added to a composition containing the TGF ⁇ -binding element, and the formation of a complex is quantitated in the absence of the test compound.
- TGF ⁇ polypeptide and a TGF ⁇ binding element may be detected by a variety of techniques. Modulation of the formation of complexes can be quantitated using, for example, detectably labeled proteins such as radiolabeled, fluorescently labeled, or enzymatically labeled TGF ⁇ polypeptides, by immunoassay, or by chromatographic detection.
- detectably labeled proteins such as radiolabeled, fluorescently labeled, or enzymatically labeled TGF ⁇ polypeptides
- immunoassay or by chromatographic detection.
- TGF ⁇ or its binding protein to facilitate separation of complexes from uncomplexed forms of one or both of the proteins, as well as to accommodate automation of the assay.
- Binding of TGF ⁇ to an upstream or downstream element, in the presence and absence of a candidate agent can be accomplished in any vessel suitable for containing the reactants. Examples include microtitre plates, test tubes, and micro-centrifuge tubes.
- a fusion protein can be provided which adds a domain that allows the protein to be bound to a matrix.
- glutathione-S-transferase/ TGF ⁇ (GST/TGF ⁇ ) fusion proteins can be adsorbed onto glutathione sepharose beads (Sigma Chemical, St. Louis, MO) or glutathione derivatized microtitre plates, which are then combined with the cell lysates, e.g. an 35s- labeled, and the test compound, and the mixture incubated under conditions conducive to complex formation, e.g. at physiological conditions for salt and pH, though slightly more stringent conditions may be desired. Following incubation, the beads are washed to remove any unbound label, and the matrix immobilized and radiolabel determined directly (e.g.
- the complexes can be dissociated from the matrix, separated by SDS-PAGE, and the level of TGF ⁇ -binding protein found in the bead fraction quantitated from the gel using standard electrophoretic techniques such as described in the appended examples.
- Other techniques for immobilizing proteins on matrices are also available for use in the subject assay and known in the art.
- the protein to be detected in the complex can be "epitope tagged" in the form of a fusion protein which includes, in addition to the TGF ⁇ sequence, a second polypeptide for which antibodies are readily available (e.g. from commercial sources).
- the GST fusion proteins described above can also be used for quantification of binding using antibodies against the GST moiety.
- Other useful epitope tags include myc-epitopes (e.g., see Ellison et al.
- the readily available source of vertebrate TGF ⁇ proteins provided by the present invention also facilitates the generation of cell-based assays for identifying small molecule agonists/antagonists and the like.
- Cells such as pancreatic cells, which are sensitive to TGF ⁇ -mediated induction by a TGF ⁇ can be caused to overexpress a recombinant TGF ⁇ protein in the presence and absence of a test agent of interest, with the assay scoring for modulation in TGF ⁇ inductive responses by the target cell mediated by the test agent.
- agents which produce a statistically significant change in TGF ⁇ -dependent induction can be identified.
- each of the assay systems set out above can be generated in a "differential" format. That is, the assay format can provide information regarding specificity as well as potency. For instance, side-by-side comparison of a test compound's effect on different TGF ⁇ proteins can provide information on selectivity, and permit the identification of compounds which selectively modulate the bioactivity of only a subset of the TGF ⁇ family.
- Another aspect of the present invention relates to a method of inducing and/or maintaining a differentiated state, enhancing survival, and/or promoting proliferation of a cell responsive to a TGF- ⁇ factor, by contacting the cells with a TGF ⁇ polypeptide or a TGF ⁇ therapeutic.
- a TGF ⁇ polypeptide or a TGF ⁇ therapeutic for instance, it is contemplated by the invention that, in light of the present finding that TGF ⁇ proteins stimulate growth and differentiation of cells such as the pancreatic cells, the subject method could be used to generate and/or maintain tissue such as the pancreatic tissue both in vitro and in vivo.
- TGF ⁇ therapeutic can be, as appropriate, any of the preparations described above, including isolated polypeptides, gene therapy constructs, antisense molecules, peptidomimetics or agents identified in the drug assays provided herein.
- TGF ⁇ therapeutics and proteins of the present invention can be used in treatment.
- agents can provide therapeutic benefits where the general strategy is to increase proliferation or maintenance of pancreatic tissue.
- Diseases that might benefit from this methodology include, but are not limited to forms of diabetes.
- the present invention contemplates the use of TGF ⁇ therapeutics for the treatment of differentiative disorders which result from, for example, de-differentiation of pancreatic tissue which may (optionally) be accompanied by abortive reentry into mitosis, e.g. apoptosis.
- degenerative disorders also include forms of diabetes.
- modulators of TGF ⁇ pathways in vivo reformation of tissue can be accomplished, e.g. in the development and maintenance of organs.
- the subject gene constructs can be used to reform injured tissue, or to improve grafting and morphology of transplanted tissue.
- TGF ⁇ agonists can be employed in a to regulate different stages of organ repair after physical, chemical or pathological insult.
- such regimens can be utilized in repair of partial surgical removal of the pancreas.
- the present method is applicable to cell culture techniques.
- pancreatic cells and tissues such as duct tissue can be induced to proliferate.
- the cultured cells can be contacted with TGF ⁇ therapeutic or protein.
- TGF ⁇ therapeutic or protein can be used alone, or can be used in combination with other factors which act to more particularly enhance a particular differentiation fate or activity of the pancreatic tissue.
- the PYY factor is known to assist in activation of pancreatic cells for insulin production.
- a TGF ⁇ therapeutic might be viewed as ensuring that the treated cell has achieved a particular phenotypic state such that the cell is poised along a certain developmental pathway so as to be properly induced upon contact with a secondary neurotrophic factor.
- TGF ⁇ therapeutics even relatively undifferentiated stem cells or primitive neuroblasts can be maintained in culture and caused to differentiate by treatment with TGF ⁇ therapeutics.
- Exemplary primitive cell cultures comprise cells harvested from the neural plate or neural tube of an embryo even before much overt differentiation has occurred.
- compositions comprising TGF ⁇ therapeutics can also be utilized for both cell culture and therapeutic methods involving generation and maintenance of non-neuronal tissue.
- the present invention makes use of the discovery that TGF ⁇ proteins are likely to be involved in controlling the development and formation of the digestive tract, liver, pancreas, lungs, and other organs which derive from the primitive gut.
- TGF ⁇ proteins a presumptively involved in cellular activity in response to TGF- ⁇ inductive signals. Accordingly, TGF ⁇ agonists and/or antagonists can be employed in the development and maintenance of an artificial liver which can have multiple metabolic functions of a normal liver.
- TGF ⁇ therapeutics can be used to induce and/or maintain differentiation of digestive tube stem cells to form hepatocyte cultures which can be used to populate extracellular matrices, or which can be encapsulated in biocompatible polymers, to form both implantable and extracorporeal artificial livers.
- compositions of TGF ⁇ therapeutics can be utilized in conjunction with transplantation of such artificial livers, as well as embryonic liver structures, to promote intraperitoneal implantation, vascularization, and in vivo differentiation and maintenance of the engrafted liver tissue.
- TGF ⁇ therapeutics are contemplated in the generation and maintenance of pancreatic cultures and artificial pancreatic tissues and organs.
- TGF ⁇ therapeutics are contacted with small cross-sections of pancreatic ductal tissue under conditions sufficient to induce outgrowth of the tissue thereby forming new pancreatic tissue.
- the TGF ⁇ therapeutics can be contacted with micro-organ explant tissue, e.g., ductal tissue explants.
- micro-organ explant tissue e.g., ductal tissue explants.
- Ductal tissue exolants preferably are derived with dimensions that allow the explanted tissue to maintain its microarchitecture and biological function for prolonged periods of time in culture, e.g., the dimensions of the explant preserve the normal tissue architecture and at least a portion of the normal tissue function that is present in vivo.
- tissue explants can be maintained, for instance, in minimal culture media for extended periods of time (e.g., for 21 days or longer) and can be contacted with different factors, including TGF ⁇ therapeutics. Carefully defined conditions can be acquired in the culture so as selectively activate discrete populations of cells in the tissue explant. Certain cells or tissues can be subsequently isolated from the explant, based upon its response to the addition of TGF ⁇ therapeutics or other growth factors to the culture.
- the micro-organ cultures used as substrates for TGF ⁇ therapeutics or TGF ⁇ protein- producing cells according to the invention preserve the normal tissue architecture that is present in vivo, e.g., the original epithelial-mesenchymal organization.
- the populations of cells of the ductal explants are grouped in a manner that preserves the natural affinity of one cell to another, e.g., to preserve layers of different cells present in explant. Such an association facilitates intercellular communication. Many types of communication take place among animal cells. This is particularly important in differentiating cells where induction is defined as the interaction between one (inducing) and another (responding) tissue or cell, as a result of which the responding cells undergo a change in differentiation. Moreover, inductive interactions occur in embryonic and adult cells and can act to establish and maintain morphogenetic patterns and also induce differentiation (Gurdon (1992) Cell 68: 185-199).
- micro-organ cultures which can be used in the method of the invention are described in the Examples and include epithelial and mesenchymal cells grouped in a manner that includes a plurality of layers so as to preserve the natural affinity and interaction of one cell to another in and between each layer.
- the ductal explants and/or pancreatic cells or tissue can be cultured on feeder layers, e.g., layers of feeder cells which secrete TGF ⁇ protein or polymeric layers containing TGF ⁇ protein.
- feeder layers e.g., layers of feeder cells which secrete TGF ⁇ protein or polymeric layers containing TGF ⁇ protein.
- Natural or recombinantly engineered cells can be provided as feeder layers to the instant cultures.
- Methods of measuring cell proliferation are well known in the art and most commonly include determining DNA synthesis characteristic of cell replication. There are numerous methods in the art for measuring DNA synthesis, any of which may be used according to the invention.
- DNA synthesis has been determined using a radioactive label ( H-thymidine) or labeled nucleotide analogues (BrdU) for detection by immunofluorescence.
- the subject TGF ⁇ protein producing cells can be implanted into one of a number of regeneration models used in the art, e.g., partial pancreatectomy or streptozocin treatment of a host animal.
- pancreatic tissue in which growth has been induced according to the invention.
- compositions which include, as a cellular component, substantially pure preparations of the subject TGF ⁇ protein producing cells.
- Cellular compositions of the present invention include not only substantially pure populations of the TGF ⁇ protein producing cells, but can also include cell culture components, e.g., culture media including amino acids, metals, coenzyme factors, as well as small populations of non-TGF ⁇ protein producing cells, e.g., some of which may arise by subsequent differentiation of the cells of the invention.
- cell culture components e.g., culture media including amino acids, metals, coenzyme factors
- non-TGF ⁇ protein producing cells e.g., some of which may arise by subsequent differentiation of the cells of the invention.
- other non- cellular components include those which render the cellular component suitable for support under particular circumstances, e.g., implantation, e.g., continuous culture.
- the invention features a pharmaceutical composition including as the cellular component, a substantially pure population of TGF ⁇ protein producing cells, which cells are capable of inducing outgrowth of pancreatic tissue in a culture medium.
- pancreatic ductal cells in which outgrowth is induced by TGF ⁇ protein or TGF ⁇ protein-producing cells will be of mammalian origin, e.g., cells isolated from a primate such as a human, from a miniature swine, or from a transgenic mammal, or are the cell culture progeny of such cells.
- pancreatic ductal tissue is isolated from a patient and subjected to the present method in order to provide a resulting culture of pancreatic cells or tissue (or differentiated cells derived therefrom). The isolated cells or tissue then can be transplanted back into the initial donor patient or into a second host patient.
- the invention features, a method for screening a compound for ability to modulate one of growth, proliferation, and/or differentiation of progenitor cells obtained by the subject method, including: (i) establishing an isolated population of pancreatic progenitor cells; (ii) contacting the population of cells with a test compound; and (iii) detecting one of growth, proliferation, and/or differentiation of the progenitor cells in the population, wherein a statistically significant change in the extent of one of growth, proliferation, and/or differentiation in the presence of the test compound relative to the extent of one of growth, proliferation, and/or differentiation in the absence of the test compound indicates the ability of the test compound to modulate one of the growth, proliferation, and/or differentiation.
- the invention features, a method for treating a disorder characterized by insufficient insulin activity, in a subject, including introducing into the subject a pharmaceutical composition including pancreatic cells derived by the subject method, or differentiated cells arising therefrom, and a pharmaceutically acceptable carrier.
- a pharmaceutical composition including pancreatic cells derived by the subject method, or differentiated cells arising therefrom, and a pharmaceutically acceptable carrier.
- the subject is a mammal, e.g., a primate, e.g., a human.
- the disorder is an insulin dependent diabetes, e.g., type I diabetes.
- the pancreatic duct cells are induced to differentiate into pancreatic islet cells, e.g., ⁇ islet cells, ⁇ islet cells, ⁇ islet cells, or ⁇ islet cells, subsequent to being introduced into the subject.
- the pancreatic progenitors cells are induced to differentiate into pancreatic islet, e.g., ⁇ islet cells, ⁇ islet cells, ⁇ islet cells, or ⁇ islet cells, in culture prior to introduction into the subject.
- the cells of the invention can be inserted into a delivery device which facilitates introduction by, injection or implantation, of the cells into the subjects.
- delivery devices include tubes, e.g., catheters, for injecting cells and fluids into the body of a recipient subject.
- the tubes additionally have a needle, e.g., a syringe, through which the cells of the invention can be introduced into the subject at a desired location.
- the TGF ⁇ protein producing cells of the invention can be inserted into such a delivery device, e.g., a syringe, in different forms.
- the cells can be suspended in a solution or embedded in a support matrix when contained in such a delivery device.
- solution includes a pharmaceutically acceptable carrier or diluent in which the cells of the invention remain viable.
- Pharmaceutically acceptable carriers and diluents include saline, aqueous buffer solutions, solvents and/or dispersion media.
- the use of such carriers and diluents is well known in the art.
- the solution is preferably sterile and fluid to the extent that easy syringability exists.
- the solution is stable under the conditions of manufacture and storage and preserved against the contaminating action of microorganisms such as bacteria and fungi through the use of, for example, parabens, chlorobutanol, phenol, ascorbic acid, thimerosal, and the like.
- Solutions of the invention can be prepared by incorporating progenitor cells as described herein in a pharmaceutically acceptable carrier or diluent and, as required, other ingredients enumerated above, followed by filtered sterilization.
- Support matrices in which the cells can be incorporated or embedded include matrices which are recipient-compatible and which degrade into products which are not harmful to the recipient. Natural and/or synthetic biodegradable matrices are examples of such matrices. Natural biodegradable matrices include plasma clots, e.g., derived from a mammal, and collagen matrices. Synthetic biodegradable matrices include synthetic polymers such as polyanhydrides, polyorthoesters, and polylactic acid. Other examples of synthetic polymers and methods of incorporating or embedding cells into these matrices are known in the art. See e.g., U.S. Patent No. 4,298,002 and U.S. Patent No. 5,308,701. These matrices provide support and protection for the fragile progenitor cells in vivo and are, therefore, the preferred form in which the progenitor cells are introduced into the recipient subjects.
- the present invention also provides substantially pure embryonic pancreatic TGF ⁇ protein producing cells which can be used therapeutically for treatment of various disorders associated with insufficient functioning of the pancreas or liver.
- the cells can be used to produce populations of pancreatic tissue or differentiated pancreatic cells for repair subsequent to partial pancreatectomy, e.g., excision of a portion of the pancreas.
- cell populations can be used to regenerate or replace pancreatic tissue loss due to, pancreatolysis, e.g., destruction of pancreatic tissue, such as pancreatitis, e.g., a condition due to autolysis of pancreatic tissue caused by escape of enzymes into the substance.
- TGF ⁇ protein or TGF ⁇ protein-producing cells can be used to induce tissue growth in pancreatic tissue of a patient suffering from any insulin- deficiency.
- the tissue then can be activated using PYY, for example, and the activated tissue then can be implanted in the donor patient.
- PYY PYY
- Type 1 diabetes mellitus results from an autoimmune- mediated destruction of the pancreatic ⁇ -cells with consequent loss of insulin production, which results in hyperglycemia.
- Type 1 diabetics require insulin replacement therapy to ensure survival.
- Non-insulin-dependent (Type 2) diabetes mellitus is initially characterized by hyperglycemia in the presence of higher-than-normal levels of plasma insulin (hyperinsulinemia).
- Type 2 diabetes tissue processes which control carbohydrate metabolism are believed to have decreased sensitivity to insulin. Progression of the Type 2 diabetic state is associated with increasing concentrations of blood glucose, and coupled with a relative decrease in the rate of glucose-induced insulin secretion.
- Type 1 diabetes involves administration of replacement doses of insulin.
- treatment of Type 2 diabetes frequently does not require administration of insulin.
- initial therapy of Type 2 diabetes may be based on diet and lifestyle changes augmented by therapy with oral hypoglycemic agents such as sulfonylurea.
- Insulin therapy may be required, however, especially in the later stages of the disease, to produce control of hyperglycemia in an attempt to minimize complications of the disease, which may arise from islet exhaustion.
- tissue-engineering approaches to treatment have focused on transplanting healthy pancreatic islets, usually encapsulated in a membrane to avoid immune rejection.
- Three general approaches have been tested in animal models. In the first, a tubular membrane is coiled in a housing that contained islets. The membrane is connected to a polymer graph that in turn connects the device to blood vessels. By manipulation of the membrane permeability, so as to allow free diffusion of glucose and insulin back and forth through the membrane, yet block passage of antibodies and lymphocytes, normoglycemia was maintained in pancreatectomized animals treated with this device (Sullivan et al. (1991) Science 252:718).
- islets have been placed in microcapsules composed of alginate or polyacrylates.
- animals treated with these microcapsules maintained normoglycemia for over two years (Lim et al. (1980) Science 210:908; O'Shea et al. (1984) Biochim. Biochys. Acta. 840:133; Sugamori et al. (1989) Trans. Am. Soc. Artif. Intern. Organs 35:791; Levesque et al. (1992) Endocrinology 130:644; and Lim et al. (1992) Transplantation 53:1180).
- all of these transplantation strategies require a large, reliable source of donor islets.
- TGF ⁇ protein or TGF ⁇ protein producing cells of the invention can be used for treatment of diabetes because they have the ability to induce growth of cells of pancreatic lineage, e.g., ⁇ islet cells.
- the TGF ⁇ protein producing cells of the invention can be cultured in vitro and used to induce pancreatic cells, such as duct tissue cells, to differentiate into mature pancreatic cells, or they can undergo differentiation in vivo once introduced into a subject.
- pancreatic cells such as duct tissue cells
- Many methods for encapsulating cells are known in the art. For example, a source of ⁇ islet cells producing insulin is encapsulated in implantable hollow fibers. Such fibers can be pre-spun and subsequently loaded with the ⁇ islet cells (Aebischer et al. U.S. Patent No.
- the subject cells can be used to produce cultures of pancreatic cells for production and purification of secreted TGF ⁇ protein and other factors.
- cultured cells can be provided as a source of insulin.
- exocrine cultures can be provided as a source for pancreatin.
- Yet another aspect of the present invention provides methods for screening various compounds for their ability to modulate growth, proliferation or differentiation of distinct progenitor cell populations from pancreatic duct tissue.
- a micro-organ explant that closely mimics the properties of a given set of tissue in vivo would have utility in screening assays in which compounds could be tested for their ability to modulate one of growth, proliferation or differentiation of progenitor cells in such tissue.
- Requirements of a reproducible model for screening might include consistency in the micro-architecture, e.g. epithelial-mesenchymal interactions, and nutritional environment in vitro, as well as prolonged viability and proliferation of cultures beyond 24 hours to observe threshold effects of compounds being screened.
- ductal explants that maintain their microarchitecture in culture, e.g., they preserve the normal epithelial-mesenchymal architecture that is present in vivo, can be used to screen various compounds or natural products.
- Such explants can be maintained in minimal culture media for extended periods of time (e.g., for 21 days or longer) and can be contacted with any compound, e.g., small molecule or natural product, e.g., TGF ⁇ protein or other growth factor, to determine the effect of such compound on one of cellular growth, proliferation or differentiation of cells in the explant.
- any compound e.g., small molecule or natural product, e.g., TGF ⁇ protein or other growth factor
- Detection and quantification of growth, proliferation or differentiation of these cells in response to a given compound provides a means for determining the compound's efficacy at inducing one of the growth, proliferation or differentiation in a given ductal explant.
- Methods of measuring cell proliferation are well known in the art and most commonly include determining DNA synthesis characteristic of cell replication. There are numerous methods in the art for measuring DNA synthesis, any of which may be used according to the invention.
- DNA synthesis has been determined using a radioactive label ( H-thymidine) or labeled nucleotide analogues (BrdU) for detection by immunofluorescence.
- the efficacy of the compound can be assessed by generating dose response curves from data obtained using various concentrations of the compound.
- a control assay can also be performed to provide a baseline for comparison. Identification of the progenitor cell population(s) amplified in response to a given test agent can be carried out according to such phenotyping as described above.
- Yet another aspect of the present invention concerns the therapeutic application of a TGF ⁇ therapeutic to enhance survival of neurons and other neuronal cells in both the central nervous system and the peripheral nervous system.
- TGF- ⁇ factors to regulate neuronal differentiation during development of the nervous system and also in the adult state indicates that certain of the TGF ⁇ proteins can be reasonably expected to participate in control of adult neurons with regard to maintenance, functional performance, and aging of normal cells; repair and regeneration processes in chemically or mechanically lesioned cells; and prevention of degeneration and premature death which result from loss of differentiation in certain pathological conditions.
- the present invention specifically contemplates applications of the subject method to the treatment of (prevention and/or reduction of the severity of) neurological conditions deriving from: (i) acute, subacute, or chronic injury to the nervous system, including traumatic injury, chemical injury, vasal injury and deficits (such as the ischemia resulting from stroke), together with infectious/inflammatory and tumor-induced injury; (ii) aging of the nervous system including Alzheimer's disease; (iii) chronic neurodegenerative diseases of the nervous system, including Parkinson's disease, Huntington's chorea, amylotrophic lateral sclerosis and the like, as well as spinocerebellar degenerations; and (iv) chronic immunological diseases of the nervous system or affecting the nervous system, including multiple sclerosis.
- Methods of introduction of exogenous TGF ⁇ polypeptides at the site of treatment include, but are not limited to, intradermal, intramuscular, intraperitoneal, intravenous, subcutaneous, oral, and intranasal.
- Intraventricular injection may be facilitated by an intraventricular catheter, for example, attached to a reservoir, such as an Ommaya reservoir.
- Methods of introduction may also be provided by rechargable or biodegradable devices, particularly where gradients of TGF ⁇ concentrations in a tissue is desired.
- the pharmaceutical TGF ⁇ polypeptide can be administered as part of a combinatorial therapy with other agents.
- the combinatorial therapy can include a TGF ⁇ protein with at least one trophic factor.
- trophic factors include insulin like growth factor, nerve growth factor, cilliary neurotrophic growth factor, schwanoma-derived growth factor, glial growth factor, stiatal-derived neuronotrophic factor, platelet-derived growth factor, and scatter factor (HGF-SF).
- the TGF ⁇ therapeutics are administered in conjunction with other agents, such as one or more of the BMP's, which may synergize with the TGF ⁇ therapeutic and reduce the dosage required to achieve a beneficial effect.
- the TGF ⁇ therapeutic formulations used in the method of the invention are most preferably applied in the form of appropriate compositions.
- appropriate compositions there may be cited all compositions usually employed for systemically or topically administering drugs.
- the pharmaceutically acceptable carrier should be substantially inert, so as not to act with the active component. Suitable inert carriers include water, alcohol polyethylene glycol, mineral oil or petroleum gel, propylene glycol and the like.
- compositions of this invention an effective amount of the particular TGF ⁇ therapeutic as the active ingredient is combined in intimate admixture with a pharmaceutically acceptable carrier, which carrier may take a wide variety of forms depending on the form of preparation desired for administration.
- a pharmaceutically acceptable carrier which carrier may take a wide variety of forms depending on the form of preparation desired for administration.
- These pharmaceutical compositions are desirable in unitary dosage form suitable, particularly, for administration orally, rectally, percutaneously, or by parenteral injection.
- any of the usual pharmaceutical media may be employed such as, for example, water, glycols, oils, alcohols and the like in the case of oral liquid preparations such as suspensions, syrups, elixirs and solutions; or solid carriers such as starches, sugars, kaolin, lubricants, binders, disintegrating agents and the like in the case of powders, pills, capsules, and tablets. Because of their ease in administration, tablets and capsules represents the most advantageous oral dosage unit form, in which case solid pharmaceutical carriers are obviously employed.
- the carrier will usually comprise sterile water, at least in large part, though other ingredients, for example, to aid solubility, may be included.
- Injectable solutions may be prepared in which the carrier comprises saline solution, glucose solution or a mixture of saline and glucose solution.
- Injectable suspensions may also be prepared in which case appropriate liquid carriers, suspending agents and the like may be employed. Also included are solid form preparations which are intended to be converted, shortly before use, to liquid form preparations.
- the carrier optionally comprises a penetration enhancing agent and/or a suitable wetting agent, optionally combined with suitable additives of any nature in minor proportions, which additives do not introduce a significant deleterious effect on the skin.
- preparations can be topically administered by other methods, for example, encapsulated in a temperature and/or pressure sensitive matrix or in film or solid carrier which is soluble in body fluids and the like for subsequent release, preferably sustained-release of the active component.
- compositions usually employed for topically administering therapeuitcs e.g., creams, gellies, dressings, shampoos, tinctures, pastes, ointments, salves, powders, liquid or semiliquid formulation and the like.
- Application of said compositions may be by aerosol e.g. with a propellent such as nitrogen carbon dioxide, a freon, or without a propellent such as a pump spray, drops, lotions, or a semisolid such as a thickened composition which can be applied by a swab.
- a propellent such as nitrogen carbon dioxide, a freon
- a propellent such as a pump spray
- drops lotions
- a semisolid compositions such as salves, creams, pastes, gellies, ointments and the like will conveniently be used.
- Dosage unit form as used in the specification and claims herein refers to physically discreate units suitable as unitary dosages, each unit containing a predetermined quantity of active ingredient calculated to produce the desired therapeutic effect in association with the required pharmaceutical carrier.
- dosage unit forms are tablets (including scored or coated tablets), capsules, pills, powders packets, wafers, injectable solutions or suspensions, teaspoonfuls, tablespoonfuls and the like, and segregated multiples thereof.
- compositions known in the art preferably hypoallergic and pH controlled are especially preferred, and include toilet waters, packs, lotions, skin milks or milky lotions.
- the preparations contain, besides the TGF ⁇ therapeutic, components usually employed in such preparations. Examples of such components are oils, fats, waxes, surfactants, humectants, thickening agents, antioxidants, viscosity stabilizers, chelating agents, buffers, preservatives, perfumes, dyestuffs, lower alkanols, and the like.
- further ingredients may be incorporated in the compositions, e.g. antiinflammatory agents, antibacterials, antifungals, disinfectants, vitamins, sunscreens, antibiotics, or other anti-acne agents.
- oils comprise fats and oils such as olive oil and hydrogenated oils; waxes such as beeswax and lanolin; hydrocarbons such as liquid paraffin, ceresin, and squalane; fatty acids such as stearic acid and oleic acid; alcohols such as cetyl alcohol, stearyl alcohol, lanolin alcohol, and hexadecanol; and esters such as isopropyl myristate, isopropyl palmitate and butyl stearate.
- oils comprise fats and oils such as olive oil and hydrogenated oils; waxes such as beeswax and lanolin; hydrocarbons such as liquid paraffin, ceresin, and squalane; fatty acids such as stearic acid and oleic acid; alcohols such as cetyl alcohol, stearyl alcohol, lanolin alcohol, and hexadecanol; and esters such as isopropyl myristate, isopropyl palmitate and butyl
- anionic surfactants such as sodium stearate, sodium cetylsulfate, polyoxyethylene laurylether phosphate, sodium N-acyl glutamate; cationic surfactants such as stearyldimethylbenzylammonium chloride and stearyltrimethylammonium chloride; ampholytic surfactants such as alkylaminoethylglycine hydrocloride solutions and lecithin; and nonionic surfactants such as glycerin monostearate, sorbitan monostearate, sucrose fatty acid esters, propylene glycol monostearate, polyoxyethylene oleylether, polyethylene glycol monostearate, polyoxyethylene sorbitan monopalmitate, polyoxyethylene coconut fatty acid monoethanolamide, polyoxypropylene glycol (e.g.
- humectants include glycerin, 1,3-butylene glycol, and propylene glycol
- examples of lower alcohols include ethanol and isopropanol
- examples of thickening agents include xanthan gum, hydroxypropyl cellulose, hydroxypropyl methyl cellulose, polyethylene glycol and sodium carboxymethyl cellulose
- examples of antioxidants comprise butylated hydroxytoluene, butylated hydroxyanisole, propyl gallate, citric acid and ethoxyquin
- examples of chelating agents include disodium edetate and ethanehydroxy diphosphate
- examples of buffers comprise citric acid, sodium citrate, boric acid, borax, and disodium hydrogen phosphate
- examples of preservatives are methyl parahydroxybenzoate, ethyl parahydroxybenzoate, dehydroacetic acid, salicylic acid and benzo
- compositions typically from 0.01 to 10% in particular from 0.1 to 5% and more in particular from 0.2 to 2.5% of the active ingredient, e.g., of the TGF ⁇ therapeutic, will be incorporated in the compositions.
- the carrier for example consists of 1 to 20%, in particular 5 to 15% of a humectant, 0.1 to 10% in particular from 0.5 to 5% of a thickener and water; or said carrier may consist of 70 to 99%, in particular 20 to 95% of a surfactant, and 0 to 20%, in particular 2.5 to 15% of a fat; or 80 to 99.9% in particular 90 to 99% of a thickener; or 5 to 15% of a surfactant, 2-15% of a humectant, 0 to 80% of an oil, very small ( ⁇ 2%) amounts of preservative, coloring agent and/or perfume, and water.
- the carrier for example consists of 2 to 10% of a lower alcohol, 0.1 to 10% or in particular 0.5 to 1% of a surfactant, 1 to 20%, in particular 3 to 7% of a humectant, 0 to 5% of a buffer, water and small amounts ( ⁇ 2%) of preservative, dyestuff and/or perfume.
- the carrier typically consists of 10-50% of oil, 1 to 10% of surfactant, 50-80% of water and 0 to 3% of preservative and/or perfume.
- all % symbols refer to weight by weight percentage.
- compositions for use in the method of the present invention are those wherein the TGF ⁇ therapeutic is formulated in liposome-containing compositions.
- Liposomes are artificial vesicles formed by amphiphatic molecules such as polar lipids, for example, phosphatidyl cholines, ethanolamines and serines, sphingomyelins, cardiolipins, plasmalogens, phosphatidic acids and cerebiosides. Liposomes are formed when suitable amphiphathic molecules are allowed to swell in water or aqueous solutions to form liquid crystals usually of multilayer structure comprised of many bilayers separated from each other by aqueous material (also referred to as coarse liposomes).
- a unilamellar vesicle Another type of liposome known to be consisting of a single bilayer encapsulating aqueous material is referred to as a unilamellar vesicle.
- water-soluble materials are included in the aqueous phase during the swelling of the lipids they become entrapped in the aqueous layer between the lipid bilayers.
- Water-soluble active ingredients such as, for example, various salt forms of a TGF ⁇ polypeptide, are encapsulated in the aqueous spaces between the molecular layers.
- the lipid soluble active ingredient of TGF ⁇ therapeutic such as an organic mimetic, is predominantly incorporated into the lipid layers, although polar head groups may protude from the layer into the aqueous space.
- the encapsulation of these compounds can be achieved by a number of methods.
- the method most commonly used involves casting a thin film of phospholipid onto the walls of a flask by evaporation from an organic solvent. When this film is dispersed in a suitable aqueous medium, multilamellar liposomes are formed. Upon suitable sonication, the coarse liposomes form smaller similarly closed vesicles.
- Water-soluble active ingredients are usually incorporated by dispersing the cast film with an aqueous solution of the compound. The unencapsulated compound is then removed by centrifugation, chromatography, dialysis or other art-known suitable procedures. The lipid-soluble active ingredient is usually incorporated by dissolving it in the organic solvent with the phospholipid prior to casting the film. If the solubility of the material in the lipid phase is not exceeded or the amount present is not in excess of that which can be bound to the lipid, liposomes prepared by the above method usually contain most of the material bound in the lipid bilayers; separation of the liposomes from unencapsulated material is not required.
- a particularly convenient method for preparing liposome formulated forms of TGF ⁇ therapeutics is the method described in EP-A-253,619, incorporated herein by reference.
- single bilayered liposomes containing encapsulated active ingredients are prepared by dissolving the lipid component in an organic medium, injecting the organic solution of the lipid component under pressure into an aqueous component while simultaneously mixing the organic and aqueous components with a high speed homogenizer or mixing means, whereupon the liposomes are formed spontaneously.
- the single bilayered liposomes containing the encapsulated TGF ⁇ therapeutic can be employed directly or they can be employed in a suitable pharmaceutically acceptable carrier for topical administration.
- the viscosity of the liposomes can be increased by the addition of one or more suitable thickening agents such as, for example xanthan gum, hydroxypropyl cellulose, hydroxypropyl methylcellulose and mixtures thereof.
- suitable thickening agents such as, for example xanthan gum, hydroxypropyl cellulose, hydroxypropyl methylcellulose and mixtures thereof.
- the aqueous component may consist of water alone or it may contain electrolytes, buffered systems and other ingredients, such as, for example, preservatives.
- Suitable electrolytes which can be employed include metal salts such as alkali metal and alkaline earth metal salts.
- the preferred metal salts are calcium chloride, sodium chloride and potassium chloride.
- the concentration of the electrolyte may vary from zero to 260 mM, preferably from 5 mM to 160 mM.
- the aqueous component is placed in a suitable vessel which can be adapted to effect homogenization by effecting great turbulence during the injection of the organic component. Homogenization of the two components can be accomplished within the vessel, or, alternatively, the aqueous and organic components may be injected separately into a mixing means which is located outside the vessel. In the latter case, the liposomes are formed in the mixing means and then transfened to another vessel for collection purpose.
- the organic component consists of a suitable non-toxic, pharmaceutically acceptable solvent such as, for example ethanol, glycerol, propylene glycol and polyethylene glycol, and a suitable phospholipid which is soluble in the solvent.
- suitable phospholipids which can be employed include lecithin, phosphatidylcholine, phosphatydylserine, phosphatidylethanol-amine, phosphatidylinositol, lysophosphatidylcholine and phospha-tidyl glycerol, for example.
- Other lipophilic additives may be employed in order to selectively modify the characteristics of the liposomes. Examples of such other additives include stearylamine, phosphatidic acid, tocopherol, cholesterol and lanolin extracts.
- ingredients which can prevent oxidation of the phospholipids may be added to the organic component.
- examples of such other ingredients include tocopherol, butylated hydroxyanisole, butylated hydroxytoluene, ascorbyl palmitate and ascorbyl oleate.
- Preservatives such a benzoic acid, methyl paraben and propyl paraben may also be added.
- covers e.g. plasters, bandages, dressings, gauze pads and the like, containing an appropriate amount of a TGF ⁇ therapeutic.
- cover e.g. plasters, bandages, dressings, gauze pads and the like which have been impregnated with a topical formulation containing the therapeutic formulation.
- Example 1 TGF ⁇ Proteins Stimulate Expansion/Growth of Pancreatic Progenitor Cells
- TGF ⁇ proteins are stable, multifunctional polypeptide growth factors. Proteins in this family have effects on growth and differentiation of many cell types. We tested the effects of TGF ⁇ -1, -2, -3, and -5 on ductal explants to determine if these closely related growth factors (70-80% sequence homology) had any effects on growth and/or differentiation of pancreatic progenitor cells.
- the main pancreatic duct was dissected from an adult rat or mouse.
- the duct was cleaned of fat and pancreatic tissue.
- the duct was sectioned into 200 micron sections and placed on ice.
- a 12- or 24-well plate was coated with matrigel-reduced growth factor.
- the matrigel was allowed to solidify for 15 minutes at room temperature.
- the ducts were individually placed on top of the matrigel.
- the plate was incubated at room temperature for 30 minutes. After 30 minutes, DMEM (low glucose) was added to each well.
- TGF ⁇ protein at appropriate concentrations, was added to the culture.
- the culture was incubated at 37 degrees C with 5% C02. Every 3-4 days, spent media was removed and fresh media and TGF ⁇ was added.
- transgenic mice with a PDX-1 /LacZ construct were generated and used as a source of duct explants as described above.
- TGF ⁇ -2 (200pg/ml), TGF ⁇ -3 (30 pg/ml) and TGF ⁇ -5 (30 pg/ml) all caused substantial growth of rat ductal explants (see figure 1).
- TGFb-1 and DMEM alone both had little or no effect.
- TGF ⁇ -5 was the most potent activator of growth. Similar results were seen with mouse ductal explants. To verify that expansion of ductal explant was due to growth of cells of pancreatic lineage, the effect of TGF ⁇ proteins on PDX-1 gene expression was determined. Ductal explants were obtained from PDX-1 /LacZ mice as described above and cultured in the presence of TGF ⁇ proteins.
- TGF ⁇ -5 caused the greatest increase in PDX-1 positive nuclei.
- TGF ⁇ -2 and TGF ⁇ -3 also caused an increase PDX-1 -expressing cells.
- Example 2 TGF ⁇ Proteins Stimulate Pancreatic Expansion in vivo
- mice were analyzed in two different ways. They were either pulsed with BrdU for 6 hours on the third day of treatment with TGF ⁇ s and then sacrificed or they were sacrificed on the 5th day. In both analyses, pancreata and the common pancreatic duct from the mice were collected, fixed, paraffin sectioned and stained for PDX-1, insulin, glucagon and BrdU (see page 43 of patent for method). The study design is depicted in figure X.
- the body weights were measured before (day 0) and after 1 month's treatment with vehicle (PBS or mouse serum albumin) or TGF ⁇ protein. Body weight was not significantly affected by TGF ⁇ protein treatment. Between 3-5 age matched animals per group were fasted overnight for approximately 16 hours before (Day -3) and after (Day 4). Mice were bled retroorbitally on
- mice were leaning towards being mildly hyperinsulinemic.
- Proliferation in the common pancreatic duct was determined by 5-bromo-2'- deoxyuridine (BrdU) incorporation.
- Untreated, TGF ⁇ -1 and TGF ⁇ -5 mice were given a single dose of BrdU (lOOUg/gm body weight i.p.) dissolved in 7mM NaOH in normal saline. After 6 hours of incorporation, mice were sacrificed and pancreata and the common bile duct were fixed in 4% PFA overnight. The tissues were then washed in PBS, embedded, sectioned, deparaffinized and stained with BrdU antibody (red Cy3 staining) and Insulin (green FITC staining) antibody .
- Total Islet area are increased in the TGF ⁇ -3 and TGF ⁇ -5 treated mice.
- Pancreatic sections from vehicle and TGF ⁇ -b treated mice sacrificed on day 5 were co-stained for insulin and glucagon.
- the total islet area per unit of exocrine pancreas volume was observed to be marked increased in TGF ⁇ -2 and TGF ⁇ -3 treated mice.
- TGF ⁇ -1 and TGF ⁇ -5 treated mice were quantitated using a Nikon 800 microscope and analyzed using the Optimus software package. 2 sections from each animal (2 animals from a different study group were analysed) and 10 islets per section were analysed to quantitate the islet area.
- the quantitation showed that the islet area was not significantly changed between untreated and TGF ⁇ -1 treated animals. In contrast, the islet area of TGF ⁇ -5 treated animals was found to be increased by 7 fold compared to the control.
- TGFB-4 EBAF
- TGFB-1 had proliferative effects on growth and expansion potential with respect to PDX-1, demonstrated in PDX-1 /LacZ duct explants.
Abstract
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2001
- 2001-02-09 AU AU2001238091A patent/AU2001238091A1/en not_active Abandoned
- 2001-02-09 WO PCT/US2001/004192 patent/WO2002012336A2/en active Application Filing
Also Published As
Publication number | Publication date |
---|---|
WO2002012336A3 (en) | 2003-08-14 |
AU2001238091A1 (en) | 2002-02-18 |
WO2002012336A2 (en) | 2002-02-14 |
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