WO2001068921A3 - Compositions and methods for simultaneous detection of multiple biological entities - Google Patents

Compositions and methods for simultaneous detection of multiple biological entities Download PDF

Info

Publication number
WO2001068921A3
WO2001068921A3 PCT/US2001/008110 US0108110W WO0168921A3 WO 2001068921 A3 WO2001068921 A3 WO 2001068921A3 US 0108110 W US0108110 W US 0108110W WO 0168921 A3 WO0168921 A3 WO 0168921A3
Authority
WO
WIPO (PCT)
Prior art keywords
present
biological entities
methods
compositions
simultaneous detection
Prior art date
Application number
PCT/US2001/008110
Other languages
French (fr)
Other versions
WO2001068921A2 (en
Inventor
Heather Koshinsky
Michael S Zwick
Kent F Mccue
Original Assignee
Investigen
Heather Koshinsky
Michael S Zwick
Kent F Mccue
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Investigen, Heather Koshinsky, Michael S Zwick, Kent F Mccue filed Critical Investigen
Priority to EP01916642A priority Critical patent/EP1294935A2/en
Priority to AU2001243640A priority patent/AU2001243640A1/en
Priority to CA002402665A priority patent/CA2402665A1/en
Publication of WO2001068921A2 publication Critical patent/WO2001068921A2/en
Publication of WO2001068921A3 publication Critical patent/WO2001068921A3/en

Links

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
    • C12Q1/6893—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for protozoa
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
    • C12Q1/689—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
    • C12Q1/6895—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for plants, fungi or algae
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/70—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving virus or bacteriophage

Landscapes

  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Organic Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Health & Medical Sciences (AREA)
  • Analytical Chemistry (AREA)
  • Engineering & Computer Science (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Biotechnology (AREA)
  • Immunology (AREA)
  • Molecular Biology (AREA)
  • Genetics & Genomics (AREA)
  • Biophysics (AREA)
  • Physics & Mathematics (AREA)
  • Microbiology (AREA)
  • Biochemistry (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Tropical Medicine & Parasitology (AREA)
  • Botany (AREA)
  • Mycology (AREA)
  • Virology (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Investigating Or Analysing Biological Materials (AREA)

Abstract

The present invention provides a method of simultaneously detecting a plurality of distinct biological entities that are suspected to be present in a test sample. The methods and compositions of the present invention facilitate large-scale and high throughput detection of biological entities suspected to be present in a variety of biological or environmental samples. Also provided by the invention are computer readable media recorded thereon amplification patterns indicating a differential representation of biological entities present in various tested samples. Further embodied in the invention are computer-based systems and kits useful for the detection methods.
PCT/US2001/008110 2000-03-14 2001-03-14 Compositions and methods for simultaneous detection of multiple biological entities WO2001068921A2 (en)

Priority Applications (3)

Application Number Priority Date Filing Date Title
EP01916642A EP1294935A2 (en) 2000-03-14 2001-03-14 Compositions and methods for simultaneous detection of multiple biological entities
AU2001243640A AU2001243640A1 (en) 2000-03-14 2001-03-14 Compositions and methods for simultaneous detection of multiple biological entities
CA002402665A CA2402665A1 (en) 2000-03-14 2001-03-14 Compositions and methods for simultaneous detection of multiple biological entities

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US18934400P 2000-03-14 2000-03-14
US60/189,344 2000-03-14

Publications (2)

Publication Number Publication Date
WO2001068921A2 WO2001068921A2 (en) 2001-09-20
WO2001068921A3 true WO2001068921A3 (en) 2003-01-23

Family

ID=22696901

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/US2001/008110 WO2001068921A2 (en) 2000-03-14 2001-03-14 Compositions and methods for simultaneous detection of multiple biological entities

Country Status (4)

Country Link
EP (1) EP1294935A2 (en)
AU (1) AU2001243640A1 (en)
CA (1) CA2402665A1 (en)
WO (1) WO2001068921A2 (en)

Families Citing this family (6)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CA2486420C (en) 2002-06-14 2014-04-15 Gen-Probe Incorporated Compositions and methods for detecting hepatitis b virus
KR100647277B1 (en) * 2003-08-14 2006-11-17 삼성전자주식회사 PCR primer set for a detection of hepatitis B and a hepatitis B detection kit comprising the same
US7887750B2 (en) 2004-05-05 2011-02-15 Bayer Healthcare Llc Analytical systems, devices, and cartridges therefor
ES2392445T3 (en) 2004-07-13 2012-12-10 Gen-Probe Incorporated Compositions and methods for the detection of hepatitis A virus nucleic acid
ES2338853B1 (en) * 2008-11-11 2011-09-14 Instituto De Salud Carlos Iii METHOD AND KIT FOR DETECTION OF HEPATITIS E (VHE) VIRUSES.
WO2014144578A1 (en) * 2013-03-15 2014-09-18 The Usa, As Represented By The Secretary, Department Of Health And Human Services Selective detection of hepatitis a, b, c, d, or e viruses or combinations thereof

Citations (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO1998044151A1 (en) * 1997-04-01 1998-10-08 Glaxo Group Limited Method of nucleic acid amplification

Family Cites Families (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5641658A (en) * 1994-08-03 1997-06-24 Mosaic Technologies, Inc. Method for performing amplification of nucleic acid with two primers bound to a single solid support

Patent Citations (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO1998044151A1 (en) * 1997-04-01 1998-10-08 Glaxo Group Limited Method of nucleic acid amplification

Non-Patent Citations (9)

* Cited by examiner, † Cited by third party
Title
"Product Catalog 1995", 1995, STRATAGENE INC., LA JOLLA, CA, U.S.A., XP002209747 *
GILBERT L ET AL: "Diagnosis of viral respiratory tract infections in children by using a reverse transcription-PCR Panel", JOURNAL OF CLINICAL MICROBIOLOGY, WASHINGTON, DC, US, vol. 34, no. 1, January 1996 (1996-01-01), pages 140 - 143, XP002098027, ISSN: 0095-1137 *
JUNGKIND D ET AL: "Evaluation of automated COBAS AMPLICOR PCR system for detection of several infectious agents and its impact on laboratory management", JOURNAL OF CLINICAL MICROBIOLOGY, WASHINGTON, DC, US, vol. 34, no. 11, November 1996 (1996-11-01), pages 2778 - 2783, XP002099374, ISSN: 0095-1137 *
K.B. MULLIS, F. FERRE, R.A. GIBBS, EDITORS: "The Polymerase Chain Reaction", 1994, BIRKHAUSER, BOSTON, US, XP002209746 *
LEW A M ET AL: "Preparation of DNA from blood for polymerase chain reaction in microtiter dish.", METHODS IN ENZYMOLOGY. UNITED STATES 1992, vol. 216, 1992, pages 127 - 135, XP008006710, ISSN: 0076-6879 *
MERCIER BERNARD ET AL: "Simultaneous screening for HBV DNA and HCV RNA genomes in blood donations using a novel TaqMan PCR assay", JOURNAL OF VIROLOGICAL METHODS, AMSTERDAM, NL, vol. 77, no. 1, January 1999 (1999-01-01), pages 1 - 9, XP002193782, ISSN: 0166-0934 *
NOLASCO G ET AL: "A method combining immunocapture and PCR amplification in a microtiter plate for the detection of plant viruses and subviral pathogens.", JOURNAL OF VIROLOGICAL METHODS, vol. 45, no. 2, 1993, pages 201 - 218, XP002209745, ISSN: 0166-0934 *
See also references of EP1294935A2 *
WIDJOJOATMODJO M N ET AL: "THE MAGNETIC IMMUNO POLYMERASE CHAIN REACTION ASSAY FOR DIRECT DETECTION OF SALMONELLAE IN FECAL SAMPLES", JOURNAL OF CLINICAL MICROBIOLOGY, WASHINGTON, DC, US, vol. 30, no. 12, 1 December 1992 (1992-12-01), pages 3195 - 3199, XP002054106, ISSN: 0095-1137 *

Also Published As

Publication number Publication date
WO2001068921A2 (en) 2001-09-20
EP1294935A2 (en) 2003-03-26
CA2402665A1 (en) 2001-09-20
AU2001243640A1 (en) 2001-09-24

Similar Documents

Publication Publication Date Title
WO2006020579A3 (en) Method for rapid identification of microorganisms
WO2003001964A3 (en) Measurement testing of blood specimens
DE602005013957D1 (en) METHOD FOR PERFORMING FULL BLOOD TESTS
RU2009101049A (en) INCREASED SPECIFICITY OF DETECTION OF ANALYZED MATTER BY MEASURING RELATED AND UNRELATED TAGS
MX338460B (en) Assay apparatuses, methods and reagents.
WO2004060044A3 (en) Method and apparatus for molecular analysis in small sample volumes
WO2001011354A3 (en) Methods for characterizing, classifying, and identifying unknowns in samples
WO2007031874A3 (en) Method of simultaneously visualizing multiple biological targets
Wei et al. Advances in typing and identification of foodborne pathogens
WO2006084283A3 (en) Methods and devices for characterizing particles in clear and turbid media
ATE408829T1 (en) METHODS AND ASSAY KITS FOR DETECTING MONONUCLEAR CELL PHENOTYPES
ATE354793T1 (en) METHOD FOR DETECTING AN ANALYTE BY FLUORESCENCE
BR0015582A (en) Immunological detection of rna: dna hybrids in microarrays
ATE553216T1 (en) PROBE, LIBRARIES AND KITS FOR ANALYZING NUCLEIC ACID MIXTURES AND METHODS FOR THEIR CONSTRUCTION
WO2007047149A3 (en) Susceptibility-matched multi-well sample holders for high-throughput screening by magnetic analysis
ATE452990T1 (en) METHOD FOR COUNTING AND IDENTIFYING MICROORGANISMS
WO2001059157A3 (en) Process for the enumeration and identification of microorganisms
WO2005064307A3 (en) Method of assessing rheumatoid arthritis by measuring anti-ccp and interleukin 6
ATE506455T1 (en) METHOD FOR DETECTING MOLECULES ASSOCIATED WITH VIABILITY
CA2435046A1 (en) An apparatus and process for analyzing a stream of fluid
WO2001068921A3 (en) Compositions and methods for simultaneous detection of multiple biological entities
ATE449185T1 (en) NUCLEIC ACIDS FOR IDENTIFYING FUNGI AND METHOD FOR USE THEREOF
WO2006133385A3 (en) Compositions, methods and kits for determining the presence of chlamydophila pneumoniae in a test sample
EP1335028A3 (en) Multi-test analysis of real-time nucleic acid amplifications
WO2006123154A3 (en) Improved methods and kits for detecting an enzyme capable of modifying a nucleic acid

Legal Events

Date Code Title Description
AK Designated states

Kind code of ref document: A2

Designated state(s): AE AG AL AM AT AU AZ BA BB BG BR BY BZ CA CH CN CO CR CU CZ DE DK DM DZ EE ES FI GB GD GE GH GM HR HU ID IL IN IS JP KE KG KP KR KZ LC LK LR LS LT LU LV MA MD MG MK MN MW MX MZ NO NZ PL PT RO RU SD SE SG SI SK SL TJ TM TR TT TZ UA UG US UZ VN YU ZA ZW

AL Designated countries for regional patents

Kind code of ref document: A2

Designated state(s): GH GM KE LS MW MZ SD SL SZ TZ UG ZW AM AZ BY KG KZ MD RU TJ TM AT BE CH CY DE DK ES FI FR GB GR IE IT LU MC NL PT SE TR BF BJ CF CG CI CM GA GN GW ML MR NE SN TD TG

121 Ep: the epo has been informed by wipo that ep was designated in this application
DFPE Request for preliminary examination filed prior to expiration of 19th month from priority date (pct application filed before 20040101)
WWE Wipo information: entry into national phase

Ref document number: 2402665

Country of ref document: CA

WWE Wipo information: entry into national phase

Ref document number: 2001916642

Country of ref document: EP

WWP Wipo information: published in national office

Ref document number: 2001916642

Country of ref document: EP

NENP Non-entry into the national phase

Ref country code: JP

WWR Wipo information: refused in national office

Ref document number: 2001916642

Country of ref document: EP

WWW Wipo information: withdrawn in national office

Ref document number: 2001916642

Country of ref document: EP