一种新的多肽一一人驱动蛋白 9和编码这种多肽的多核苷酸 技术领域 , . , A new polypeptide-human kinesin 9 and polynucleotides encoding such polypeptides.
本发明属于生物技术领域, 具体地说, 本发明描述了一种新的多肽一一人驱动 蛋白 9, 以及编码此多肽的多核苷酸序列。 本发明还涉及此多核苷酸和多肽的制备 方法和应用。 背景技术 The present invention belongs to the field of biotechnology. Specifically, the present invention describes a novel polypeptide, human kinesin 9, and a polynucleotide sequence encoding the polypeptide. The invention also relates to a method and application for preparing such polynucleotides and polypeptides. Background technique
驱动蛋白是一种化学动力学蛋白, 能够利用水解 ATP所产生的能量来产生机械 力。 在 ATP的存在条件下, 驱动蛋白可以与微管结合, 并且在其上运动。 因此, 驱 动蛋白又被称为 "分子马达"。 驱动蛋白在几乎所有细胞中都存在。 大部分的驱动 蛋白是游离在细胞质中的, 而有一些则与不同的膜结合的细胞器相关, 例如细胞 小泡、 内质网、 以及在内质网与高尔基体中间的一些膜结构。 把驱动蛋白重链的 ( kines in heavy chain, KHC )抗体注入细胞内可以抑制溶酶体、 高尔基体来源的 运输小泡和膜结合的色素颗粒的运动。 将 KHC mRNA 的反义核酸注入细胞内则会阻 碍许多蛋白的顺行轴向运输。 Kinesin is a chemical kinetic protein that can use the energy generated by the hydrolysis of ATP to generate mechanical forces. In the presence of ATP, kinesin can bind to microtubules and move on them. Therefore, the drive protein is also called "molecular motor". Kinesin is present in almost all cells. Most kinesins are free in the cytoplasm, while some are related to different membrane-bound organelles, such as cell vesicles, endoplasmic reticulum, and some membrane structures between the endoplasmic reticulum and the Golgi apparatus. Injecting kines in heavy chain (KHC) antibodies into cells can inhibit the movement of lysosomal, Golgi-derived transport vesicles and membrane-bound pigment particles. Injecting antisense nucleic acids of KHC mRNA into cells can prevent anterograde axial transport of many proteins.
驱动蛋白还存在于真核细胞的纤毛和鞭毛系统中, 与其 9 + 2 的微管结构紧密 相关, 可能参与 9 + 2 结构中位于中心位置的两根微管纤维的相对旋转运动。 另外 一种驱动蛋白类似蛋白, 驱动蛋白 Π ( knes inl l ), 不但存在于可动的 9 + 2 的纤 毛 /鞭毛运动系统中, 还存在于不可动的 9 + 0的纤毛系统中, 与一种称为鞭毛间传 输的传输过程相关。 Kinesin also exists in the ciliary and flagellar systems of eukaryotic cells and is closely related to its 9 + 2 microtubule structure, which may participate in the relative rotational movement of the two microtubule fibers located at the center of the 9 + 2 structure. Another kinesin-like protein, kinesin II (knes inl l), exists not only in the movable 9 + 2 cilia / flagellar movement system, but also in the immobile 9 + 0 cilia system, and a This type of transmission is called inter-flagellar transmission.
在细胞分裂中, 驱动蛋白, 以及其他一些驱动蛋白相关蛋白(kinesin - related proteins , KRPs ) 为纺锤体的形成、 保持、 与染色体的结合以及将染色体向两极移 动提供动力。 在纺锤体两极的形成、 染色体在赤道板位置的排列中驱动蛋白都是 不可缺少的。 还有证据表明驱动蛋白可以加速微管的解聚, 因此在有丝分裂中, 驱动蛋白可能有调控微管动力系统的作用。 除此以外, 在卵母细胞减数分裂中也 发现了驱动蛋白与纺锤体结合的现象, 说明了驱动蛋白对配子形成的作用。 In cell division, kinesin and other kinesin-related proteins (KRPs) provide motive power for spindle formation, maintenance, binding to chromosomes, and movement of chromosomes to the poles. Kinesins are indispensable in the formation of spindle poles and the arrangement of chromosomes in the equatorial plate. There is also evidence that kinesin can accelerate the depolymerization of microtubules, so kinesin may have a role in regulating the microtubule dynamics during mitosis. In addition, kinesin-spindle binding was also found in oocyte meiosis, which explained the role of kinesin in gamete formation.
几乎所有的驱动蛋白都含有两根 α螺旋纤维相互缠绕而成的主链。 许多驱动 蛋白的一端还有附加的多肽链, 称为轻链。 因此, 驱动蛋白是由两根重链和两根 轻链组成的 α 2 - β 2 的异质四聚体结构。 驱动蛋白家族都含有两个主要成分: 一 个动力结构域和一个承载物结合结构域。 驱动蛋白在神经元内参与细胞小泡和细 胞器的运输。 在果蝇中突变的驱动蛋白会导致神经元功能的削弱或丧失。 对人类
来说, 编码驱动蛋白的基因的缺陷会导致神经病变以及临床上十分重要的综合症。 由于在减数分裂和有丝分裂中驱动蛋白为染色体移动提供动力, 因此减数分裂驱 动蛋白的缺陷会导致不育, 自发性流产, 新生儿染色体紊乱以及染色体非整数倍 等症状。 而有丝分裂驱动蛋白的缺陷会导致体细胞的异常或形成肿瘤等。 Almost all kinesins contain a backbone composed of two alpha helix fibers intertwined with each other. Many kinesins have an additional polypeptide chain at one end, called a light chain. Therefore, kinesin is a heterotetrameric structure of α 2-β 2 composed of two heavy chains and two light chains. The kinesin family contains two main components: a dynamic domain and a carrier-binding domain. Kinesins are involved in the transport of cellular vesicles and organelles within neurons. The mutated kinesin in Drosophila leads to weakened or lost neuron function. To humans For example, defects in the gene encoding the kinesin can cause neuropathy and clinically important syndromes. Because kinesin provides motive power for chromosome movement during meiosis and mitosis, defects in meiosis kinesin can cause symptoms such as infertility, spontaneous abortion, neonatal chromosomal disorders, and non-integral multiples of chromosomes. Defects in mitotic kinesins can cause abnormalities in somatic cells or tumor formation.
本发明的多肽含有驱动蛋白轻链的保守序列, 因此认为是一种新的驱动蛋白, 并推断其具有类似的生物学功能, 命名为人驱动蛋白 XX。 The polypeptide of the present invention contains a conserved sequence of a kinesin light chain, so it is considered to be a new kinesin, and it is inferred that it has similar biological functions, and is named human kinesin XX.
由于如上所述人驱动蛋白 9 蛋白在机体内重要功能中起重要作用, 而且相信这 些调节过程中涉及大量的蛋白, 因而本领域中一直需要鉴定更多参与这些过程的 人驱动蛋白 9蛋白, 特别是鉴定这种蛋白的氨基酸序列。 新人驱动蛋白 9蛋白编码 基因的分离也为研究确定该蛋白在健康和疾病状态下的作用提供了基础。 这种蛋 白可能构成开发疾病诊断和 /或治疗药的基础, 因此分离其编码 DNA是非常重要的。 发明的公开 Since human kinesin 9 protein plays an important role in important functions in the body as described above, and it is believed that a large number of proteins are involved in these regulatory processes, there has been a need in the art to identify more human kinesin 9 proteins involved in these processes, especially Is to identify the amino acid sequence of this protein. Isolation of the new human kinesin 9 protein encoding gene also provides a basis for research to determine the role of this protein in health and disease states. This protein may form the basis for the development of diagnostic and / or therapeutic drugs for the disease, so it is important to isolate its coding DNA. Disclosure of invention
本发明的一个目的是提供分离的新的多肽一一人驱动蛋白 9 以及其片段、 类 似物和衍生物。 It is an object of the present invention to provide isolated novel polypeptides-human kinesin 9 and fragments, analogs and derivatives thereof.
本发明的另一个目的是提供编码该多肽的多核苷酸。 Another object of the invention is to provide a polynucleotide encoding the polypeptide.
本发明的另一个目的是提供含有编码人驱动蛋白 9的多核苷酸的重组载体。 本发明的另一个目的是提供含有编码人驱动蛋白 9 的多核苷酸的基因工程化 宿主细胞。 Another object of the present invention is to provide a recombinant vector containing a polynucleotide encoding human kinesin 9. It is another object of the present invention to provide a genetically engineered host cell containing a polynucleotide encoding human kinesin 9.
本发明的另一个目的是提供生产人驱动蛋白 9的方法。 Another object of the present invention is to provide a method for producing human kinesin 9.
本发明的另一个目的是提供针对本发明的多肽一一人驱动蛋白 9的抗体。 Another object of the present invention is to provide an antibody against the polypeptide-human kinesin 9 of the present invention.
本发明的另一个目的是提供了针对本发明多肽" "一人驱动蛋白 9 的模拟化合 物、 拮抗剂、 激动剂、 抑制剂。 Another object of the present invention is to provide mimetic compounds, antagonists, agonists, and inhibitors of the "human kinesin 9" directed to the polypeptide of the present invention.
本发明的另一个目的是提供诊断治疗与人驱动蛋白 9异常相关的疾病的方法。 本发明涉及一种分离的多肽, 该多肽是人源的, 它包含: 具有 SEQ ID No. 2 氨基酸序列的多肽、 或其保守性变体、 生物活性片段或衍生物。 较佳地, 该多肽 是具有 SEQ ID NO: 2氨基酸序列的多肽。 Another object of the present invention is to provide a method for diagnosing and treating diseases related to abnormalities in human kinesin 9. The present invention relates to an isolated polypeptide, which is of human origin and comprises: a polypeptide having the amino acid sequence of SEQ ID No. 2, or a conservative variant, biologically active fragment or derivative thereof. Preferably, the polypeptide is a polypeptide having the amino acid sequence of SEQ ID NO: 2.
本发明还涉及一种分离的多核苷酸, 它包含选自下组的一种核苷酸序列或其 变体: The invention also relates to an isolated polynucleotide comprising a nucleotide sequence or a variant thereof selected from the group consisting of:
(a)编码具有 SEQ ID No. 2氨基酸序列的多肽的多核苷酸; ' (a) a polynucleotide encoding a polypeptide having the amino acid sequence of SEQ ID No. 2;
(b)与多核苷酸 ω互补的多核苷酸; (b) a polynucleotide complementary to the polynucleotide ω;
(c)与(a)或(b)的多核苷酸序列具有至少 70%相同性的多核苷酸。
更佳地, 该多核苷酸的序列是选自下组的一种: (a)具有 SEQ ID NO: 1 中 2326- 2571位的序列; 和(b)具有 SEQ ID NO: 1中 1-2965位的序列。 (c) A polynucleotide having at least 70% identity to a polynucleotide sequence of (a) or (b). More preferably, the sequence of the polynucleotide is one selected from the group consisting of: (a) a sequence having positions 2326-2571 in SEQ ID NO: 1; and (b) a sequence having 1-2965 in SEQ ID NO: 1 Sequence of bits.
本发明另外涉及一种含有本发明多核苷酸的载体, 特别是表达载体; 一种用 该载体遗传工程化的宿主细胞, 包括转化、 转导或转染的宿主细胞; 一种包括培 养所述宿主细胞和回收表达产物的制备本发明多肽的方法。 The invention further relates to a vector, in particular an expression vector, containing the polynucleotide of the invention; a host cell genetically engineered with the vector, including a transformed, transduced or transfected host cell; and a method comprising culturing said Host cell and method of preparing the polypeptide of the present invention by recovering the expression product.
本发明还涉及一种能与本发明多肽特异性结合的抗体。 The invention also relates to an antibody capable of specifically binding to a polypeptide of the invention.
本发明还涉及一种筛选的模拟、 激活、 拮抗或抑制人驱动蛋白 9蛋白活性的化 合物的方法, 其包括利用本发明的多肽。 本发明还涉及用该方法获得的化合物。 The invention also relates to a method for screening compounds that mimic, activate, antagonize or inhibit the activity of human kinesin 9 protein, which comprises utilizing the polypeptide of the invention. The invention also relates to compounds obtained by this method.
本发明还涉及一种体外检测与人驱动蛋白 9蛋白异常表达相关的疾病或疾病 易感性的方法, 包括检测生物样品中所述多肽或其编码多核苷酸序列中的突变, 或者检测生物样品中本发明多肽的量或生物活性。 The invention also relates to a method for in vitro detection of a disease or susceptibility to a disease associated with abnormal expression of a human kinesin 9 protein, comprising detecting a mutation in the polypeptide or a coding polynucleotide sequence thereof in a biological sample, or detecting a mutation in a biological sample. The amount or biological activity of a polypeptide of the invention.
本发明也涉及一种药物组合物, 它含有本发明多肽或其模拟物、 激活剂、 拮 抗剂或抑制剂以及药学上可接受的载体。 The invention also relates to a pharmaceutical composition comprising a polypeptide of the invention or a mimetic thereof, an activator, an antagonist or an inhibitor, and a pharmaceutically acceptable carrier.
本发明还涉及本发明的多肽和 /或多核苷酸在制备用于治疗癌症、 发育性疾病 或免疫性疾病或其它由于人驱动蛋白 9表达异常所引起疾病的药物的用途。 The present invention also relates to the use of the polypeptide and / or polynucleotide of the present invention in the preparation of a medicament for treating cancer, developmental disease or immune disease or other diseases caused by abnormal expression of human kinesin 9.
本发明的其它方面由于本文的技术的公开, 对本领域的技术人员而言是显而 易见的。 本说明书和权利要求书中使用的下列术语除非特别说明具有如下的含义: "核酸序列" 是指寡核苷酸、 核苷酸或多核苷酸及其片段或部分, 也可以指基因 组或合成的 DNA或 RNA, 它们可以是单链或双链的, 代表有义链或反义链。 类似地, 术语 "氨基酸序列" 是指寡肽、 肽、 多肽或蛋白质序列及其片段或部分。 当本发 明中的 "氨基酸序列" 涉及一种天然存在的蛋白质分子的氨基酸序列时, 这种 "多 肽" 或 "蛋白质" 不意味着将氨基酸序列限制为与所述蛋白质分子相关的完整的 天然氨基酸。 Other aspects of the invention will be apparent to those skilled in the art from the disclosure of the techniques herein. The following terms used in this specification and claims have the following meanings unless specifically stated: "Nucleic acid sequence" refers to an oligonucleotide, a nucleotide or a polynucleotide and a fragment or part thereof, and may also refer to a genomic or synthetic DNA or RNA, they can be single-stranded or double-stranded, representing the sense or antisense strand. Similarly, the term "amino acid sequence" refers to an oligopeptide, peptide, polypeptide or protein sequence and fragments or portions thereof. When the "amino acid sequence" in the present invention relates to the amino acid sequence of a naturally occurring protein molecule, such "polypeptide" or "protein" does not mean to limit the amino acid sequence to a complete natural amino acid related to the protein molecule .
蛋白质或多核苷酸 "变体" 是指一种具有一个或多个氨基酸或核苷酸改变的 氨基酸序列或编码它的多核苷酸序列。 所述改变可包括氨基酸序列或核苷酸序列 中氨基酸或核苷酸的缺失、 插入或替换。 变体可具有 "保守性" 改变, 其中替换 的氨基酸具有与原氨基酸相类似的结构或化学性质, 如用亮氨酸替换异亮氨酸。 变体也可具有非保守性改变, 如用色氨酸替换甘氨酸。 A protein or polynucleotide "variant" refers to an amino acid sequence having one or more amino acids or nucleotide changes or a polynucleotide sequence encoding it. The changes may include deletions, insertions or substitutions of amino acids or nucleotides in the amino acid sequence or nucleotide sequence. Variants can have "conservative" changes in which the substituted amino acid has a structural or chemical property similar to the original amino acid, such as the replacement of isoleucine with leucine. Variants can also have non-conservative changes, such as replacing glycine with tryptophan.
"缺失" 是指在氨基酸序列或核苷酸序列中一个或多个氨基酸或核苷酸的缺 失。
"插入" 或 "添加" 是指在氨基酸序列或核苷酸序列中的改变导致与天然存 在的分子相比, 一个或多个氨基酸或核苷酸的增加。 "替换" 是指由不同的氨基酸 或核苷酸替换一个或多个氨基酸或核苷酸。 "Deletion" refers to the deletion of one or more amino acids or nucleotides in an amino acid sequence or nucleotide sequence. "Insertion" or "addition" refers to an alteration in the amino acid sequence or nucleotide sequence that results in an increase in one or more amino acids or nucleotides compared to a naturally occurring molecule. "Replacement" refers to the replacement of one or more amino acids or nucleotides with different amino acids or nucleotides.
"生物活性" 是指具有天然分子的结构、 调控或生物化学功能的蛋白质。 类似 地, 术语 "免疫学活性" 是指天然的、 重组的或合成蛋白质及其片段在合适的动 物或细胞中诱导特定免疫反应以及与特异性抗体结合的能力。 "Biological activity" refers to a protein that has the structure, regulation, or biochemical function of a natural molecule. Similarly, the term "immunologically active" refers to the ability of natural, recombinant or synthetic proteins and fragments thereof to induce a specific immune response in appropriate animals or cells and to bind to specific antibodies.
"激动剂" 是指当与人驱动蛋白 9结合时, 一种可引起该蛋白质改变从而调节 该蛋白质活性的分子。 激动剂可以包括蛋白质、 核酸、 碳水化合物或任何其它可 结合人驱动蛋白 9的分子。 An "agonist" refers to a molecule that, when combined with human kinesin 9, causes a change in the protein to regulate the activity of the protein. An agonist may include a protein, a nucleic acid, a carbohydrate, or any other molecule that binds human kinesin 9.
"拮抗剂" 或 "抑制物" 是指当与人驱动蛋白 9结合时, 一种可封闭或调节人 驱动蛋白 9的生物学活性或免疫学活性的分子。 拮抗剂和抑制物可以包括蛋白质、 核酸、 碳水化合物或任何其它可结合人驱动蛋白 9的分子。 An "antagonist" or "inhibitor" refers to a molecule that, when combined with human kinesin 9, can block or regulate the biological or immunological activity of human kinesin 9. Antagonists and inhibitors can include proteins, nucleic acids, carbohydrates or any other molecule that can bind human kinesin 9.
"调节" 是指人驱动蛋白 9的功能发生改变, 包括蛋白质活性的升高或降低、 结合特性的改变及人驱动蛋白 9的任何其它生物学性质、 功能或免疫性质的改变。 "Regulation" refers to a change in the function of human kinesin 9, including an increase or decrease in protein activity, a change in binding properties, and any other biological, functional, or immune properties of human kinesin 9.
"基本上纯"是指基本上不含天然与其相关的其它蛋白、脂类、糖类或其它物质。 本领域的技术人员能用标准的蛋白质纯化技术纯化人驱动蛋白 9。 基本上纯的人驱 动蛋白 9在非还原性聚丙烯酰胺凝胶上能产生单一的主带。 人驱动蛋白 9多肽的纯 度可用氨基酸序列分析。 By "substantially pure" is meant substantially free of other proteins, lipids, sugars or other substances with which it is naturally associated. Those skilled in the art can purify human kinesin 9 using standard protein purification techniques. Substantially pure human drive protein 9 produces a single main band on a non-reducing polyacrylamide gel. The purity of the human kinesin 9 peptide can be analyzed by amino acid sequence.
"互补的" 或 "互补" 是指在允许的盐浓度和温度条件下通过碱基配对的多核 苷酸天然结合。 例如, 序列 "C- T- G- A" 可与互补的序列 "G- A- C- T" 结合。 两个单 链分子之间的互补可以是部分的或全部的。 核酸链之间的互补程度对于核酸链之 间杂交的效率及强度有明显影响。 "Complementary" or "complementary" refers to the natural binding of a nucleotide by base-pairing under conditions of acceptable salt concentration and temperature. For example, the sequence "C-T-G-A" can be combined with the complementary sequence "G-A-C-T". The complementarity between two single-stranded molecules may be partial or complete. The degree of complementarity between nucleic acid strands has a significant effect on the efficiency and strength of hybridization between nucleic acid strands.
"同源性" 是指互补的程度, 可以是部分同源或完全同源。 "部分同源" 是指 一种部分互补的序列, 其至少可部分抑制完全互补的序列与靶核酸的杂交。 这种 杂交的抑制可通过在严格性程度降低的条件下进行杂交 (Southern印迹或 Northern 印迹等) 来检测。 基本上同源的序列或杂交探针可竟争和抑制完全同源的序列与 靶序列在的严格性程度降低的条件下的结合。 这并不意味严格性程度降低的条件 允许非特异性结合, 因为严格性程度降低的条件要求两条序列相互的结合为特异 性或选择性相互作用。 "Homology" refers to the degree of complementarity and can be partially homologous or completely homologous. "Partial homology" refers to a partially complementary sequence that at least partially inhibits hybridization of a fully complementary sequence to a target nucleic acid. This inhibition of hybridization can be detected by performing hybridization (Southern or Northern blotting, etc.) under conditions of reduced stringency. Substantially homologous sequences or hybridization probes can compete and inhibit the binding of completely homologous sequences to the target sequence under conditions of reduced stringency. This does not mean that the conditions of reduced stringency allow non-specific binding, because the conditions of reduced stringency require that the two sequences bind to each other specifically or selectively.
"相同性百分率" 是指在两种或多种氨基酸或核酸序列比较中序列相同或相似 的百分率。 可用电子方法测定相同性百分率, 如通过 MEGALIGN程序 ( Lasergene software package, DNASTAR, Inc. , Madi son Wi s. )。 MEGALIGN程序可根据不同的
方法如 Clus ter法比较两种或多种序列(Higgins, D. G. 和 P. M. Sharp (1988) Gene 73: 237-244)。 Clus ter法通过检查所有配对之间的距离将各组序列排列成簇。 然后 将各簇以成对或成组分配。 两个氨基酸序列如序列 A和序列 B之间的相同性百分率通 过下式计算: "Percent identity" refers to the percentage of sequences that are identical or similar in the comparison of two or more amino acid or nucleic acid sequences. The percent identity can be determined electronically, such as by the MEGALIGN program (Lasergene software package, DNASTAR, Inc., Madi son Wis.). The MEGALIGN program can be Methods such as the Clus ter method compare two or more sequences (Higgins, DG and PM Sharp (1988) Gene 73: 237-244). The Clus ter method arranges groups of sequences into clusters by checking the distance between all pairs. The clusters are then assigned in pairs or groups. The percent identity between two amino acid sequences such as sequence A and sequence B is calculated by the following formula:
序列 A与序列 B之间匹配的残基个数 X 100 Number of matching residues between sequence A and sequence X 100
(序列 A的残基数一序列 A中间隔残基数一序列 B中间隔残基数) 也可以通过 Cluster法或用本领域周知的方法如 Jotun Hein 测定核酸序列之 间的相同性百分率(Hein J. , (1990) Methods in emzumology 183: 625-645) 0 (The number of residues in sequence A-the number of spacer residues in sequence A-the number of spacer residues in sequence B) The percentage of identity between nucleic acid sequences can also be determined by the Cluster method or by methods known in the art such as Jotun Hein (Hein J., (1990) Methods in emzumology 183: 625-645) 0
"相似性" 是指氨基酸序列之间排列对比时相应位置氨基酸残基的相同或保 守性取代的程度。 用于保守性取代的氨基酸例如, 带负电荷的氨基酸可包括天冬 氨酸和谷氨酸; 带正电荷的氨基酸可包括赖氨酸和精氨酸; 具有不带电荷的头部 基团有相似亲水性的氨基酸可包括亮氨酸、 异亮氨酸和缬氨酸; 甘氨酸和丙氨酸; 天冬酰胺和谷氨酰胺; 丝氨酸和苏氨酸; 苯丙氨酸和酪氨酸。 "Similarity" refers to the degree of identical or conservative substitutions of amino acid residues at corresponding positions in the alignment of amino acid sequences. Amino acids used for conservative substitutions, for example, negatively charged amino acids may include aspartic acid and glutamic acid; positively charged amino acids may include lysine and arginine; having an uncharged head group is Similar hydrophilic amino acids may include leucine, isoleucine and valine; glycine and alanine; asparagine and glutamine; serine and threonine; phenylalanine and tyrosine.
"反义" 是指与特定的 DM或 RNA序列互补的核苷酸序列。 "反义链" 是指与 "有 义链" 互补的核酸链。 "Antisense" refers to a nucleotide sequence that is complementary to a particular DM or RNA sequence. "Antisense strand" refers to a nucleic acid strand that is complementary to the "sense strand".
"衍生物" 是指 HFP或编码其的核酸的化学修饰物。 这种化学修饰物可以是用 烷基、 酰基或氨基替换氢原子。 核酸衍生物可编码保留天然分子的主要生物学特 性的多肽。 "Derivative" refers to a chemical modification of HFP or a nucleic acid encoding it. Such a chemical modification may be the replacement of a hydrogen atom with an alkyl group, an acyl group or an amino group. Nucleic acid derivatives can encode polypeptides that retain the main biological characteristics of natural molecules.
"抗体" 是指完整的抗体分子及其片段, 如 Fa、 ?( ') 2及? , 其能特异性结 合人驱动蛋白 9的抗原决定簇。 "Antibody" refers to a complete antibody molecule and its fragments, such as Fa,? (') 2 and?, Which specifically bind to the epitope of human kinesin 9.
"人源化抗体" 是指非抗原结合区域的氨基酸序列被替换变得与人抗体更为相 似, 但仍保留原始结合活性的抗体。 A "humanized antibody" refers to an antibody in which the amino acid sequence of a non-antigen binding region is replaced to become more similar to a human antibody, but still retains the original binding activity.
"分离的" 一词指将物质从它原来的环境(例如, 若是自然产生的就指其天然 环境) 之中移出。 比如说, 一个自然产生的多核苷酸或多肽存在于活动物中就是 没有被分离出来, 但同样的多核苷酸或多肽同一些或全部在自然系统中与之共存 的物质分开就是分离的。 这样的多核苷酸可能是某一载体的一部分, 也可能这样 的多核苷酸或多肽是某一组合物的一部分。 既然载体或组合物不是它天然环境的 成分, 它们仍然是分离的。 The term "isolated" refers to the removal of a substance from its original environment (for example, its natural environment if it occurs naturally). For example, a naturally occurring polynucleotide or polypeptide is not isolated when it is present in a living animal, but the same polynucleotide or polypeptide is separated from some or all of the substances that coexist with it in the natural system. Such a polynucleotide may be part of a vector, or such a polynucleotide or polypeptide may be part of a composition. Since the carrier or composition is not part of its natural environment, they are still isolated.
如本发明所用, "分离的" 是指物质从其原始环境中分离出来(如果是天然的 物质, 原始环境即是天然环境)。 如活体细胞内的天然状态下的多聚核苷酸和多肽 是没有分离纯化的, 但同样的多聚核苷酸或多肽如从天然状态中同存在的其他物
质中分开, 则为分离纯化的。 As used herein, "isolated" refers to the separation of a substance from its original environment (if it is a natural substance, the original environment is the natural environment). For example, polynucleotides and polypeptides in a natural state in a living cell are not isolated and purified, but the same polynucleotides or polypeptides are the same as other substances existing in the natural state. It is separated and purified, and it is isolated and purified.
如本文所用, "分离的人驱动蛋白 9" 是指人驱动蛋白 9基本上不含天然与 其相关的其它蛋白、 脂类、 糖类或其它物质。 本领域的技术人员能用标准的蛋 白质纯化技术纯化人驱动蛋白 9。 基本上纯的多肽在非还原聚丙烯酰胺凝胶上 能产生单一的主带。 人驱动蛋白 9多肽的纯度能用氨基酸序列分析。 As used herein, "isolated human kinesin 9" means that human kinesin 9 is substantially free of other proteins, lipids, sugars, or other substances with which it is naturally associated. Those skilled in the art can purify human kinesin 9 using standard protein purification techniques. Substantially pure peptides can produce a single main band on a non-reducing polyacrylamide gel. The purity of the human kinesin 9 polypeptide can be analyzed by amino acid sequence.
本发明提供了一种新的多肽一一人驱动蛋白 9 , 其基本上是由 SEQ ID N0: 2所 示的氨基酸序列组成的。 本发明的多肽可以是重组多肽、 天然多肽、 合成多肽, 优选重组多肽。 本发明的多肽可以是天然纯化的产物, 或是化学合成的产物, 或 使用重组技术从原核或真核宿主 (例如, 细菌、 酵母、 高等植物、 昆虫和哺乳动物 细胞)中产生。 根据重组生产方案所用的宿主, 本发明的多肽可以是糖基化的, 或 可以是非糖基化的。 本发明的多肽还可包括或不包括起始的甲硫氨酸残基。 The present invention provides a new polypeptide, human kinesin 9, which is basically composed of the amino acid sequence shown in SEQ ID NO: 2. The polypeptide of the present invention may be a recombinant polypeptide, a natural polypeptide, or a synthetic polypeptide, and preferably a recombinant polypeptide. The polypeptides of the present invention can be naturally purified products or chemically synthesized products, or can be produced from prokaryotic or eukaryotic hosts (eg, bacteria, yeast, higher plants, insects, and mammalian cells) using recombinant techniques. Depending on the host used in the recombinant production protocol, the polypeptide of the invention may be glycosylated, or it may be non-glycosylated. Polypeptides of the invention may also include or exclude starting methionine residues.
本发明还包括人驱动蛋白 9 的片段、 衍生物和类似物。 如本发明所用, 术语 "片段"、 "衍生物" 和 "类似物" 是指基本上保持本发明的人驱动蛋白 9 相同的 生物学功能或活性的多肽。 本发明多肽的片段、 衍生物或类似物可以是: ( I ) 这 样一种, 其中一个或多个氨基酸残基被保守或非保守氨基酸残基(优选的是保守 氨基酸残基) 取代, 并且取代的氨基酸可以是也可以不是由遗传密码子编码的; 或者 (Π )这样一种, 其中一个或多个氨基酸残基上的某个基团被其它基团取代包 含取代基; 或者 (II I )这样一种, 其中成熟多肽与另一种化合物 (比如延长多肽 半衰期的化合物, 例如聚乙二醇) 融合; 或者 (IV )这样一种, 其中附加的氨基酸 序列融合进成熟多肽而形成的多肽序列 (如前导序列或分泌序列或用来纯化此多 肽的序列或蛋白原序列) 通过本文的阐述, 这样的片段、 衍生物和类似物被认为 在本领域技术人员的知识范围之内。 The invention also includes fragments, derivatives and analogs of human kinesin 9. As used in the present invention, the terms "fragment", "derivative" and "analog" refer to a polypeptide that substantially maintains the same biological function or activity of the human kinesin 9 of the present invention. A fragment, derivative or analog of the polypeptide of the present invention may be: (I) a kind in which one or more amino acid residues are substituted with conservative or non-conservative amino acid residues (preferably conservative amino acid residues), and the substitution The amino acid may or may not be encoded by a genetic codon; or (Π) a type in which a group on one or more amino acid residues is substituted by another group to include a substituent; or (II I) Such a type in which the mature polypeptide is fused with another compound (such as a compound that prolongs the half-life of the polypeptide, such as polyethylene glycol); or (IV) a type in which the additional amino acid sequence is fused into the mature polypeptide and the polypeptide sequence is formed (Such as a leader sequence or a secreted sequence or a sequence used to purify this polypeptide or a protease sequence) As set forth herein, such fragments, derivatives, and analogs are considered to be within the knowledge of those skilled in the art.
本发明提供了分离的核酸(多核苷酸), 基本由编码具有 SEQ ID NO: 2 氨基酸 序列的多肽的多核苷酸组成。 本发明的多核苷酸序列包括 SEQ ID N0: 1的核苷酸序 列。 本发明的多核苷酸是从人胎脑组织的 cDNA 文库中发现的。 它包含的多核苷酸 序列全长为 2965个碱基, 其开放读框 2326-2571编码了 81个氨基酸。 此多肤具有 驱动蛋白轻链的特征序列, 可推断出该人驱动蛋白 9 具有驱动蛋白轻链所代表的 结构和功能。 The present invention provides an isolated nucleic acid (polynucleotide), which basically consists of a polynucleotide encoding a polypeptide having the amino acid sequence of SEQ ID NO: 2. The polynucleotide sequence of the present invention includes a nucleotide sequence of SEQ ID NO: 1. The polynucleotide of the present invention is found from a cDNA library of human fetal brain tissue. It contains a polynucleotide sequence with a total length of 2965 bases, and its open reading frame 2326-2571 encodes 81 amino acids. This polypeptide has the characteristic sequence of the kinesin light chain, and it can be deduced that the human kinesin 9 has the structure and function represented by the kinesin light chain.
本发明的多核苷酸可以是 DNA形式或是 RNA形式。 DM形式包括 cDM、 基因组 DNA或人工合成的 DNA。 DNA可以是单链的或是双链的。 DM可以是编码链或非编码 链。 编码成熟多肽的编码区序列可以与 SEQ ID NO: 1所示的编码区序列相同或者是 简并的变异体。 如本发明所用, "简并的变异体" 在本发明中是指编码具有 SEQ ID
N0: 2的蛋白质或多肽, 但与 SEQ ID NO: 1所示的编码区序列有差别的核酸序列。 编码 SEQ ID NO: 2的成熟多肽的多核苷酸包括: 只有成熟多肽的编码序列; 成 熟多肽的编码序列和各种附加编码序列; 成熟多肽的编码序列 (和任选的附加编 码序列) 以及非编码序列。 The polynucleotide of the present invention may be in the form of DNA or RNA. DM forms include cDM, genomic DNA or synthetic DNA. DNA can be single-stranded or double-stranded. The DM can be a coding chain or a non-coding chain. The coding region sequence encoding a mature polypeptide may be the same as the coding region sequence shown in SEQ ID NO: 1 or a degenerate variant. As used herein, "degenerate variant" means in the present invention that encodes a gene having the SEQ ID A protein or polypeptide of NO: 2 but a nucleic acid sequence different from the coding region sequence shown in SEQ ID NO: 1. The polynucleotide encoding the mature polypeptide of SEQ ID NO: 2 includes: only the coding sequence of the mature polypeptide; the coding sequence of the mature polypeptide and various additional coding sequences; the coding sequence of the mature polypeptide (and optional additional coding sequences); Coding sequence.
术语 "编码多肽的多核苷酸" 是指包括编码此多肽的多核苷酸和包括附加编 码和 /或非编码序列的多核苷酸。 The term "polynucleotide encoding a polypeptide" refers to a polynucleotide that includes the polypeptide and a polynucleotide that includes additional coding and / or non-coding sequences.
本发明还涉及上述描述多核苷酸的变异体, 其编码与本发明有相同的氨基酸 序列的多肽或多肽的片断、 类似物和衍生物。 此多核苷酸的变异体可以是天然发 生的等位变异体或非天然发生的变异体。 这些核苷酸变异体包括取代变异体、 缺 失变异体和插入变异体。 如本领域所知的, 等位变异体是一个多核苷酸的替换形 式, 它可能是一个或多个核苷酸的取代、 缺失或插入, 但不会从实质上改变其编 码的多肽的功能。 The invention also relates to variants of the polynucleotides described above, which encode polypeptides or fragments, analogs and derivatives of polypeptides having the same amino acid sequence as the invention. This polynucleotide variant can be a naturally occurring allelic variant or a non-naturally occurring variant. These nucleotide variants include substitution variants, deletion variants, and insertion variants. As known in the art, an allelic variant is an alternative form of a polynucleotide that may be a substitution, deletion, or insertion of one or more nucleotides, but does not substantially change the function of the polypeptide it encodes .
本发明还涉及与以上所描述的序列杂交的多核苷酸 (两个序列之间具有至少 50%, 优选具有 70%的相同性)。 本发明特别涉及在严格条件下与本发明所述多核苷 酸可杂交的多核苷酸。 在本发明中, "严格条件" 是指: (1)在较低离子强度和较高 温度下的杂交和洗脱, 如 0. 2xSSC, 0. 1°/»SDS, 6(TC ;或(2)杂交时加用变性剂, 如 50% (v/v)甲酰胺, 0. 1%小牛血清 /0. l%Ficol l , 42 °C等; 或(3)仅在两条序列之间的 相同性至少在 95%以上,更好是 97%以上时才发生杂交。 并且, 可杂交的多核苷酸编 码的多肽与 SEQ ID NO: 2所示的成熟多肽有相同的生物学功能和活性。 The invention also relates to a polynucleotide that hybridizes to the sequence described above (having at least 50%, preferably 70% identity between the two sequences). The present invention particularly relates to polynucleotides that can hybridize to the polynucleotides of the present invention under stringent conditions. In the present invention, "strict conditions" means: (1) hybridization and elution at lower ionic strength and higher temperature, such as 0.2xSSC, 0.1 ° / »SDS, 6 (TC; or ( 2) Add a denaturant during hybridization, such as 50% (v / v) formamide, 0.1% calf serum / 0.1% Ficol l, 42 ° C, etc .; or (3) only between the two sequences The hybridization occurs only when the identity between them is at least 95%, and more preferably 97%. Furthermore, the polypeptide encoded by the hybridizable polynucleotide has the same biological function as the mature polypeptide shown in SEQ ID NO: 2 and Active.
本发明还涉及与以上所描述的序列杂交的核酸片段。 如本发明所用, "核酸片 段"的长度至少含 10个核苷酸, 较好是至少 20-30个核苷酸, 更好是至少 50- 60个 核苷酸,最好是至少 100个核苷酸以上。核酸片段也可用于核酸的扩增技术(如 PCR) 以确定和 /或分离编码人驱动蛋白 9的多核苷酸。 The invention also relates to nucleic acid fragments that hybridize to the sequences described above. As used herein, a "nucleic acid fragment" contains at least 10 nucleotides in length, preferably at least 20-30 nucleotides, more preferably at least 50-60 nucleotides, and most preferably at least 100 nuclei. Glycylic acid or more. Nucleic acid fragments can also be used in nucleic acid amplification techniques, such as PCR, to identify and / or isolate polynucleotides encoding human kinesin 9.
本发明中的多肽和多核苷酸优选以分离的形式提供, 更佳地被纯化至均质。 本发明的编码人驱动蛋白 9 的特异的多核苷酸序列能用多种方法获得。 例 如, 用本领域熟知的杂交技术分离多核苷酸。 这些技术包括但不局限于: 1)用 探针与基因组或 cDM 文库杂交以检出同源的多核苷酸序列, 和 2)表达文库的 抗体筛选以检出具有共同结构特征的克隆的多核苷酸片段。 The polypeptides and polynucleotides in the present invention are preferably provided in an isolated form and are more preferably purified to homogeneity. The specific polynucleotide sequence encoding the human kinesin 9 of the present invention can be obtained by various methods. For example, polynucleotides are isolated using hybridization techniques well known in the art. These techniques include, but are not limited to: 1) hybridization of probes to genomic or CDM libraries to detect homologous polynucleotide sequences, and 2) antibody screening of expression libraries to detect cloned polynucleosides with common structural characteristics Acid fragments.
本发明的 DM片段序列也能用下列方法获得: 1)从基因组 DNA分离双链 DNA 序列; 2)化学合成 DNA序列以获得所述多肽的双链 DNA。 The DM fragment sequence of the present invention can also be obtained by the following methods: 1) isolating the double-stranded DNA sequence from the genomic DNA; 2) chemically synthesizing the DNA sequence to obtain the double-stranded DNA of the polypeptide.
上述提到的方法中, 分离基因组 DNA 最不常用。 DM 序列的直接化学合成 是经常选用的方法。 更经常选用的方法是 cDNA序列的分离。 分离感兴趣的 cDNA
的标准方法是从高表达该基因的供体细胞分离 raRNA并进行逆转录, 形成质粒或 噬菌体 cDNA 文库。 提取 mRNA 的方法巳有多种成熟的技术, 试剂盒也可从商业 途径获得(Q iagene)。 而构建 cDNA 文库也是通常的方法(Sambrook, et a l. , Mo lecular Cloning, A Laboratory Manua l , Cold Spr ing Harbor Laboratory. New York, 1989)。 ¾可得到商业供应的 cDNA 文库, 如 C lontech 公司的不同 cDNA 文库。 当结合使用聚合酶反应技术时, 即使极少的表达产物也能克隆。 Of the methods mentioned above, genomic DNA isolation is the least commonly used. Direct chemical synthesis of DM sequences is often the method of choice. The more commonly used method is the isolation of cDNA sequences. Isolate cDNA of interest The standard method is to isolate raRNA from donor cells that overexpress the gene and perform reverse transcription to form a plasmid or phage cDNA library. There are many mature techniques for mRNA extraction, and kits are also commercially available (Qiagene). The construction of cDNA libraries is also a common method (Sambrook, et al., Molecular Cloning, A Laboratory Manua, Cold Spruing Harbor Laboratory. New York, 1989). ¾ Commercially available cDNA libraries are available, such as different cDNA libraries from Clontech. When polymerase reaction technology is used in combination, even very small expression products can be cloned.
可用常规方法从这些 cDNA 文库中筛选本发明的基因。 这些方法包括(但不 限于): (l) DNA-DNA或 DNA-RNA杂交; (2)标志基因功能的出现或丧失; (3)测定 人驱动蛋白 9 的转录本的水平; (4)通过免疫学技术或测定生物学活性, 来检测 基因表达的蛋白产物。 上述方法可单用, 也可多种方法联合应用。 The genes of the present invention can be selected from these cDNA libraries by conventional methods. These methods include (but are not limited to): (l) DNA-DNA or DNA-RNA hybrids; (2) the presence or absence of marker gene functions; (3) measuring the level of human kinesin 9 transcripts; (4) passing Immunological techniques or assays for biological activity to detect gene-expressed protein products. The above methods can be used singly or in combination.
在第(1)种方法中, 杂交所用的探针是与本发明的多核苷酸的任何一部分同 源, 其长度至少 10个核苷酸, 较好是至少 30个核苷酸, 更好是至少 50个核苷 酸, 最好是至少 100个核苷酸。 此外, 探针的长度通常在 2000个核苷酸之内, 较佳的为 1000个核苷酸之内。 此处所用的探针通常是在本发明的基因序列信息 的基础上化学合成的 DNA序列。 本发明的基因本身或者片段当然可以用作探针。 DNA探针的标记可用放射性同位素, 荧光素或酶(如碱性磷酸酶)等。 In the method (1), the probe used for hybridization is homologous to any part of the polynucleotide of the present invention, and its length is at least 10 nucleotides, preferably at least 30 nucleotides, more preferably At least 50 nucleotides, preferably at least 100 nucleotides. In addition, the length of the probe is usually within 2000 nucleotides, preferably within 1000 nucleotides. The probe used here is generally a DNA sequence chemically synthesized based on the gene sequence information of the present invention. The genes or fragments of the present invention can of course be used as probes. DNA probes can be labeled with radioisotopes, luciferin, or enzymes (such as alkaline phosphatase).
在第(4)种方法中, 检测人驱动蛋白 9基因表达的蛋白产物可用免疫学技术 如 Wes tern印迹法, 放射免疫沉淀法, 酶联免疫吸附法(ELISA)等。 In the (4) method, the protein product of human kinesin 9 gene expression can be detected using immunological techniques such as Western blotting, radioimmunoprecipitation, and enzyme-linked immunosorbent assay (ELISA).
应 用 PCR 技术 扩 增 DNA/RM 的 方 法 (Sa ik i, et a l . Sc ience 1985; 230: 1 350-1354)被优选用于获得本发明的基因。 特别是很难从文库中得到 全长的 cDNA 时, 可优选使用 RACE法(RACE - cDNA末端快速扩增法), 用于 PCR 的引物可根据本文所公开的本发明的多核苷酸序列信息适当地选择, 并可用常 规方法合成。 可用常规方法如通过凝胶电泳分离和纯化扩增的 DNA/RNA片段。 A method (Saik i, et al. Science 1985; 230: 1 350-1354) using DNA technology to amplify DNA / RM is preferably used to obtain the gene of the present invention. In particular, when it is difficult to obtain a full-length cDNA from a library, the RACE method (RACE-Rapid Amplification of cDNA Ends) can be preferably used. The primers used for PCR can be appropriately based on the polynucleotide sequence information of the present invention disclosed herein. Select and synthesize using conventional methods. The amplified DNA / RNA fragments can be isolated and purified by conventional methods such as by gel electrophoresis.
如上所述得到的本发明的基因, 或者各种 DNA 片段等的多核苷酸序列可用 常规方法如双脱氧链终止法(Sanger et a l. PNAS , 1977 , 74 : 5463- 5467)测定。 这类多核苷酸序列测定也可用商业测序试剂盒等。为了获得全长的 cDNA序列 , 测 序需反复进行。 有时需要测定多个克隆的 cDNA 序列, 才能拼接成全长的 cDNA 序列。 The polynucleotide sequence of the gene of the present invention or various DNA fragments and the like obtained as described above can be determined by a conventional method such as dideoxy chain termination method (Sanger et al. PNAS, 1977, 74: 5463-5467). Such polynucleotide sequences can also be determined using commercial sequencing kits and the like. In order to obtain the full-length cDNA sequence, the sequencing must be repeated. Sometimes it is necessary to determine the cDNA sequence of multiple clones in order to splice into a full-length cDNA sequence.
本发明也涉及包含本发明的多核苷酸的载体, 以及用本发明的载体或直接 用人驱动蛋白 9 编码序列经基因工程产生的宿主细胞, 以及经重组技术产生本 发明所述多肽的方法。 The present invention also relates to a vector comprising a polynucleotide of the present invention, and a host cell genetically engineered using the vector of the present invention or directly using a human kinesin 9 coding sequence, and a method for producing a polypeptide of the present invention by recombinant technology.
本发明中, 编码人驱动蛋白 9 的多核苷酸序列可插入到载体中, 以构成含
有本发明所述多核苷酸的重组载体。 术语 "载体" 指本领域熟知的细菌质粒、 噬菌体、 酵母质粒、 植物细胞病毒、 哺乳动物细胞病毒如腺病毒、 逆转录病毒 或其它载体。 在本发明中适用的载体包括但不限于: 在细菌中表达的基于 T7启 动子的表达载体(Rosenberg, et a l . Gene, 1987, 56: 125) ; 在哺乳动物细胞 中表达的 MSXND 表达载体(Lee and Nathans , J Bio Chem. 263: 3521, 1988)和 在昆虫细胞中表达的来源于杆状病毒的载体。 总之, 只要能在宿主体内复制和 稳定, 任何质粒和载体都可以用于构建重组表达载体。 表达载体的一个重要特 征是通常含有复制起始点、 启动子、 标记基因和翻译调控元件。 In the present invention, a polynucleotide sequence encoding human kinesin 9 may be inserted into a vector to constitute A recombinant vector having a polynucleotide according to the present invention. The term "vector" refers to bacterial plasmids, phages, yeast plasmids, plant cell viruses, mammalian cell viruses such as adenoviruses, retroviruses, or other vectors well known in the art. Vectors suitable for use in the present invention include, but are not limited to: T7 promoter-based expression vectors (Rosenberg, et al. Gene, 1987, 56: 125) expressed in bacteria; MSXND expression vectors expressed in mammalian cells ( Lee and Nathans, J Bio Chem. 263: 3521, 1988) and baculovirus-derived vectors expressed in insect cells. In short, as long as it can be replicated and stabilized in a host, any plasmid and vector can be used to construct a recombinant expression vector. An important feature of expression vectors is that they usually contain an origin of replication, a promoter, a marker gene, and translational regulatory elements.
本领域的技术人员熟知的方法能用于构建含编码人驱动蛋白 9 的 DNA序列 和合适的转录 /翻译调控元件的表达载体。 这些方法包括体外重组 DNA技术、 DNA 合成技术、体内重组技术等 (Sambroook, et a l. Mo lecul ar Clon ing, a Labora tory Manua l , cold Spr ing Harbor Laboratory. New York, 1989)。 所述的 DNA序列 可有效连接到表达载体中的适当启动子上, 以指导 mRNA合成。 这些启动子的代 表性例子有: 大肠杆菌的 lac或 t rp启动子; λ噬菌体的 PL启动子; 真核启动 子包括 CMV立即早期启动子、 HSV胸苷激酶启动子、 早期和晚期 SV40启动子、 反转录病毒的 LTRs和其它一些已知的可控制基因在原核细胞或真核细胞或其病 毒中表达的启动子。 表达载体还包括翻译起始用的核糖体结合位点和转录终止 子等。 在载体中插入增强子序列将会使其在高等真核细胞中的转录得到增强。 增强子是 DNA表达的顺式作用因子, 通常大约有 10到 300个碱基对, 作用于启 动子以增强基因的转录。 可举的例子包括在复制起始点晚期一侧的 100 到 270 个碱基对的 SV40增强子、 在复制起始点晚期一侧的多瘤增强子以及腺病毒增强 子等。 Methods known to those skilled in the art can be used to construct expression vectors containing a DNA sequence encoding human kinesin 9 and appropriate transcriptional / translational regulatory elements. These methods include in vitro recombinant DNA technology, DNA synthesis technology, and in vivo recombination technology (Sambroook, et al. Molecul ar Cloning, a Labora tory Manua, cold Spring Harbor Laboratory. New York, 1989). The DNA sequence can be operably linked to an appropriate promoter in an expression vector to guide mRNA synthesis. Representative examples of these promoters are: the lac or trp promoter of E. coli; the PL promoter of lambda phage; eukaryotic promoters include the CMV immediate early promoter, the HSV thymidine kinase promoter, and the early and late SV40 promoters , Retroviral LTRs and other known promoters that control the expression of genes in prokaryotic or eukaryotic cells or their viruses. The expression vector also includes a ribosome binding site for translation initiation, a transcription terminator, and the like. Insertion of enhancer sequences into the vector will enhance its transcription in higher eukaryotic cells. Enhancers are cis-acting factors for DNA expression, usually about 10 to 300 base pairs, which act on the promoter to enhance gene transcription. Illustrative examples include SV40 enhancers of 100 to 270 base pairs on the late side of the origin of replication, polyoma enhancers on the late side of the origin of replication, and adenoviral enhancers.
此外, 表达载体优选地包含一个或多个选择性标记基因, 以提供用于选择 转化的宿主细胞的表型性状, 如真核细胞培养用的二氢叶酸还原酶、 新霉素抗 性以及绿色荧光蛋白(GFP), 或用于大肠杆菌的四环素或氨苄青霉素抗性等。 In addition, the expression vector preferably contains one or more selectable marker genes to provide phenotypic traits for selection of transformed host cells, such as dihydrofolate reductase, neomycin resistance, and green for eukaryotic cell culture. Fluorescent protein (GFP), or tetracycline or ampicillin resistance for E. coli.
本领域一般技术人员都清楚如何选择适当的载体 /转录调控元件 (如启动 子、 增强子等) 和选择性标记基因。 Those of ordinary skill in the art will know how to select appropriate vector / transcription control elements (such as promoters, enhancers, etc.) and selectable marker genes.
本发明中, 编码人驱动蛋白 9 的多核苷酸或含有该多核苷酸的重组载体可 转化或转导入宿主细胞, 以构成含有该多核苷酸或重组载体的基因工程化宿主 细胞。 术语 "宿主细胞" 指原核细胞, 如细菌细胞; 或是低等真核细胞, 如酵 母细胞; 或是高等真核细胞, 如哺乳动物细胞。 代表性例子有: 大肠杆菌, 链 霉菌属; 细菌细胞如鼠伤寒沙门氏菌; 真菌细胞如酵母; 植物细胞; 昆虫细胞
如果蝇 S2或 Sf 9 ; 动物细胞如 CH0、 COS或 Bowes黑素瘤细胞等。 In the present invention, a polynucleotide encoding human kinesin 9 or a recombinant vector containing the polynucleotide can be transformed or transduced into a host cell to constitute a genetically engineered host cell containing the polynucleotide or the recombinant vector. The term "host cell" refers to a prokaryotic cell, such as a bacterial cell; or a lower eukaryotic cell, such as a yeast cell; or a higher eukaryotic cell, such as a mammalian cell. Representative examples are: E. coli, Streptomyces; bacterial cells such as Salmonella typhimurium; fungal cells such as yeast; plant cells; insect cells If fly S2 or Sf 9; animal cells such as CH0, COS or Bowes melanoma cells.
用本发明所述的 DNA序列或含有所述 DNA序列的重组载体转化宿主细胞可 用本领域技术人员熟知的常规技术进行。 当宿主为原核生物如大肠杆菌时, 能 吸收 DNA 的感受态细胞可在指数生长期后收获, 用 ( 12法处理, 所用的步骤 在本领域众所周知。 可供选择的是用 MgCl2。 如果需要, 转化也可用电穿孔的方 法进行。 当宿主是真核生物, 可选用如下的 DM 转染方法: 磷酸钙共沉淀法, 或者常规机械方法如显微注射、 电穿孔、 脂质体包装等。 Transformation of a host cell with a DNA sequence described in the present invention or a recombinant vector containing the DNA sequence can be performed using conventional techniques well known to those skilled in the art. When the host is a prokaryote such as E. coli, competent cells capable of DNA uptake can be in the exponential growth phase were harvested, treated with (1 2 method used in the step are well known in the art. Alternatively, it is a MgCl 2. If If necessary, transformation can also be performed by electroporation. When the host is a eukaryotic organism, the following DM transfection methods can be used: calcium phosphate co-precipitation method, or conventional mechanical methods such as microinjection, electroporation, and liposome packaging Wait.
通过常规的重组 DNA 技术, 利用本发明的多核苷酸序列可用来表达或生产 重组的人驱动蛋白 9 (Sc ience , 1984 ; 224 : 1431)。 一般来说有以下步骤: By conventional recombinant DNA technology, the polynucleotide sequence of the present invention can be used to express or produce recombinant human kinesin 9 (Science, 1984; 224: 1431). Generally there are the following steps:
(1) .用本发明的编码人 人驱动蛋白 9的多核苷酸(或变异体), 或用含有该 多核苷酸的重组表达载体转化或转导合适的宿主细胞; (1) using the polynucleotide (or variant) encoding human human kinesin 9 of the present invention, or transforming or transducing a suitable host cell with a recombinant expression vector containing the polynucleotide;
(2) .在合适的培养基中培养宿主细胞; (2) culturing host cells in a suitable medium;
(3) .从培养基或细胞中分离、 纯化蛋白质。 (3) Isolate and purify protein from culture medium or cells.
在步骤 (2 ) 中, 根据所用的宿主细胞, 培养中所用的培养基可选自各种 常规培养基。 在适于宿主细胞生长的条件下进行培养。 当宿主细胞生长到适当 的细胞密度后, 用合适的方法(如温度转换或化学诱导)诱导选择的启动子, 将 细胞再培养一段时间。 In step (2), depending on the host cell used, the medium used in the culture may be selected from various conventional mediums. Culture is performed under conditions suitable for host cell growth. After the host cells have grown to an appropriate cell density, the selected promoter is induced by a suitable method (such as temperature conversion or chemical induction), and the cells are cultured for a period of time.
在步骤( 3 ) 中, 重组多肽可包被于细胞内、 或在细胞膜上表达、 或分泌到 细胞外。 如果需要, 可利用其物理的、 化学的和其它特性通过各种分离方法分 离和纯化重组的蛋白。 这些方法是本领域技术人员所熟知的。 这些方法包括但 并不限于: 常规的复性处理、 蛋白沉淀剂处理(盐析方法)、 离心、 渗透破菌、 超声波处理、 超离心、 分子筛层析(凝胶过滤)、 吸附层析、 离子交换层析、 高 效液相层析(HPLC)和其它各种液相层析技术及这些方法的结合。 附图的简要说明 In step (3), the recombinant polypeptide may be coated in a cell, expressed on a cell membrane, or secreted outside the cell. If desired, recombinant proteins can be separated and purified by various separation methods using their physical, chemical and other properties. These methods are well known to those skilled in the art. These methods include, but are not limited to: conventional renaturation treatment, protein precipitant treatment (salting out method), centrifugation, osmotic disruption, ultrasonic treatment, ultracentrifugation, molecular sieve chromatography (gel filtration), adsorption chromatography, ion Exchange chromatography, high performance liquid chromatography (HPLC) and various other liquid chromatography techniques and combinations of these methods. Brief description of the drawings
下列附图用于说明本发明的具体实施方案, 而不用于限定由权利要求书所 界定的本发明范围。 The following drawings are used to illustrate specific embodiments of the invention, but not to limit the scope of the invention as defined by the claims.
图 1是本发明人驱动蛋白 9和驱动蛋白轻链功能结构域的氨基酸序列比较 图。 Fig. 1 is a diagram comparing amino acid sequences of the kinesin 9 and kinesin light chain functional domains of the present invention.
图 2 为分离的人驱动蛋白 9 的聚丙烯酰胺凝胶电泳图 (SDS-PAGE )。 9KDa 为 蛋白质的分子量。 箭头所指为分离出的蛋白条带。
实现本发明的最佳方式 Figure 2 shows the polyacrylamide gel electrophoresis (SDS-PAGE) of human kinesin 9 isolated. 9KDa is the molecular weight of the protein. The arrow indicates the isolated protein band. The best way to implement the invention
下面结合具体实施例, 进一步阐述本发明。 应理解, 这些实施例仅用于说明 本发明而不用于限制本发明的范围。 下列实施例中未注明具体条件的实验方法, 通常按照常规条件如 Sambrook等人, 分子克隆:实验室手册 (New York: Cold Spr ing Harbor Laboratory Press, 1989)中所述的条件, 或按照制造厂商所建议的条件。 实施例 1: 人驱动蛋白 9的克隆 The present invention is further described below with reference to specific embodiments. It should be understood that these examples are only used to illustrate the present invention and not to limit the scope of the present invention. The experimental methods without specific conditions in the following examples are generally performed according to the conventional conditions such as those described in Sambrook et al., Molecular Cloning: Laboratory Manual (New York: Cold Harbor Harbor Laboratory Press, 1989), or according to manufacturing conditions. Conditions recommended by the manufacturer. Example 1: Cloning of human kinesin 9
用异硫氰酸胍 /酚 /氯仿一步法提取人胎脑总 RNA。 用 Quik raRNA Isolat ion Ki t ( Qiegene 公司产品)从总 RM中分离 poly (A) mRNA。 2ug poly (A) mRNA经逆转录 形成 cDM。用 Smart cDNA克隆试剂盒(购自 Clontech )将 cDM片段定向插入到 pBSK (+) 载体 (Clontech公司产品)的多克隆位点上, 转化 DH5 α , 细菌形成 cDNA文库。 用 Dye terminate cycle react ion sequencing ki t (Perkin - Elmer公司产品) 和 ABI 377自 动测序仪 (Perkin- Elmer公司)测定所有克隆的 5'和 3'末端的序列。 将测定的 cDNA序 列与已有的公共 DNA序列数据库 (Genebank )进行比较, 结果发现其中一个克隆 0351c04的 cDNA序列为新的 DM。 通过合成一系列引物对该克隆所含的插入 cDNA片段 进行双向测定。 结果表明, 0351c04克隆所含的全长 cDNA为 2965bp (如 Seq ID N0: 1 所示) , 从第 2326bp至 2571bp有一个 246bp的开放阅读框架 ( 0RF ) , 编码一个新的 蛋白质 (如 Seq ID NO: 2所示) 。 我们将此克隆命名为 pBS- 0351c04 , 编码的蛋白质 命名为人驱动蛋白 9。 Human fetal brain total RNA was extracted by one-step method with guanidine isothiocyanate / phenol / chloroform. Poly (A) mRNA was isolated from total RM using Quik raRNA Isolat ion Kit (product of Qiegene). 2ug poly (A) mRNA forms cDM by reverse transcription. The Smart cDNA Cloning Kit (purchased from Clontech) was used to insert the cDM fragment into the multiple cloning site of the pBSK (+) vector (Clontech) to transform DH5α. The bacteria formed a cDNA library. Dye terminate cycle react ion sequencing kit (Perkin-Elmer) and ABI 377 automatic sequencer (Perkin-Elmer) were used to determine the sequences at the 5 'and 3' ends of all clones. The determined cDNA sequence was compared with the existing public DNA sequence database (Genebank), and it was found that the cDNA sequence of one of the clones 0351c04 was a new DM. The inserted cDNA fragment contained in this clone was determined in both directions by synthesizing a series of primers. The results show that the full-length cDNA contained in the 0351c04 clone is 2965bp (as shown in Seq ID N0: 1), and has a 246bp open reading frame (0RF) from 2326bp to 2571bp, encoding a new protein (such as Seq ID NO : Shown in 2). We named this clone pBS-0351c04 and the encoded protein was named human kinesin 9.
实施例 2: cDNA 克隆的结构域分析 Example 2: Domain analysis of cDNA clones
将本发明的人驱动蛋白 9的序列及其编码的蛋白序列, 用 GCG中的 prof i le scan 程序 (Bas iclocal Al ignment search tool) [Al tschul, SF et al. J. Mol. Biol. 1990; 215: 403-10] , 在 pros i te等数据库进行结构域分析。 本发明的人驱动蛋白 9与结构 域驱动蛋白轻链有同源, 同源结果示于图 1。 The sequence of the human kinesin 9 of the present invention and the protein sequence encoded by the kinesin 9 of the present invention were profiled by GCF using the profil i le scan program (Basiclocal Al ignment search tool) [Al tschul, SF et al. J. Mol. Biol. 1990; 215: 403-10], performing domain analysis in a database such as ProSite. The human kinesin 9 of the present invention is homologous to the domain kinesin light chain, and the homology results are shown in FIG. 1.
实施例 3: 用 RT- PCR方法克隆编码人驱动蛋白 9的基因 Example 3: Cloning of a gene encoding human kinesin 9 by RT-PCR
用胎脑细胞总 RNA为模板,以 ol igo- dT为引物进行逆转录反应合成 cDNA,用 CDNA was synthesized using fetal brain total RNA as a template and ol igo-dT as a primer for reverse transcription reaction.
Qiagene的试剂盒纯化后,用下列引物进行 PCR扩增: After purification of Qiagene's kit, PCR amplification was performed with the following primers:
Pr imerl: 5'- GAGCTTTTTTTCTTAGGGCTTTTT -3' (SEQ ID NO: 3) Pr imerl: 5'- GAGCTTTTTTTCTTAGGGCTTTTT -3 '(SEQ ID NO: 3)
Primer 2: 5'- TTTTTTTTTTATATTCCTATTAGC -3' (SEQ ID NO: 4) Primer 2: 5'- TTTTTTTTTTATATATTCCTATTAGC -3 '(SEQ ID NO: 4)
Primerl为位于 SEQ ID NO: 1的 5,端的笫 lbp开始的正向序列; Primerl is a forward sequence starting at , lbp at 5, end of SEQ ID NO: 1;
Pr imer2为 SEQ ID NO: 1的中的 3,端反向序列。 Pr imer2 is the 3, terminal reverse sequence of SEQ ID NO: 1.
扩增反应的条件: 在 50 μ 1的反应体积中含有 50讓 ol/L KC1, 10mmol/L Tris- CI, (pH8. 5) , 1. 5mmol/L MgCl2, 200 μ mol/L dNTP, lOpmol引物, 1U的 Taq DNA聚合酶
(Clontech公司产品)。 在 PE9600型 DNA热循环仪(Perkin- Elmer公司)上按下列条件 反应 25个周期: 94°C 30sec; 55。C 30sec; 72。C 2min。 在 RT-PCR时同时设 β - act in 为阳性对照和模板空白为阴性对照。 扩增产物用 QIAGEN公司的试剂盒纯化, 用 TA克 隆试剂盒连接到 pCR载体上(Invi trogen公司产品) 。 DNA序列分析结果表明 PCR产 物的 DNA序列与 SEQ ID NO: 1所示的 1- 2965bp完全相同。 Conditions for the amplification reaction: 50 μl of Kol, KCl, 10 mmol / L Tris-CI, (pH 8.5.5), 1.5 mmol / L MgCl 2 , 200 μ mol / L dNTP, lOpmol primer, 1U Taq DNA polymerase (Clontech). The reaction was performed on a PE9600 DNA thermal cycler (Perkin-Elmer) under the following conditions for 25 cycles: 94 ° C 30sec; 55. C 30sec; 72. C 2min. During RT-PCR, β-act in was set as a positive control and template blank was set as a negative control. The amplified product was purified using a QIAGEN kit and ligated to a pCR vector (Invitrogen) using a TA cloning kit. The DNA sequence analysis results showed that the DNA sequence of the PCR product was exactly the same as that of 1-2965bp shown in SEQ ID NO: 1.
实施例 4: Northern 印迹法分析人驱动蛋白 9基因的表达: Example 4: Northern blot analysis of human kinesin 9 gene expression:
用一步法提取总 RNA [Ana l. Biochem 1987, 162, 156-159]。 该法包括酸性硫氰 酸胍苯酚-氯仿抽提。 即用 4M异硫氰酸胍- 25mM柠檬酸纳, 0. 2M乙酸钠 ( pH4. 0 )对 组织进行匀浆, 加入 1倍体积的苯酚和 1/5体积的氯仿-异戊醇 (49: 1 ) , 混合后离 心。 吸出水相层, 加入异丙醇 (0. 8体积)并将混合物离心得到 RM沉淀。 将得到的 RNA沉淀用 70°/。乙醇洗涤, 干燥并溶于水中。 用 20 g MA, 在含 20mM 3- ( N-吗啉代) 丙磺酸(pH7. 0 ) -5mM乙酸钠 -IraM EDTA-2. 2M甲醛的 1. 2%琼脂糖凝胶上进行电泳。 然后转移至硝酸纤维素膜上。 用 a - 32P dATP通过随机引物法制备 32P-标记的 DNA探 针。 所用的 DNA探针为图 1所示的 PCR扩增的人驱动蛋白 9编码区序列(2326bp至 2571bp)。 将 32P-标记的探针 (约 2 x 106cpm/ml ) 与转移了 RNA的硝酸纤维素膜在一 溶液中于 42°C杂交过夜, 该溶液包含 50%甲酰胺 -25mM H2P04 ( pH7. 4 ) -5 SSC-5 Denhardt 's溶液和 20(^ g/ml鲑精 DNA。 杂交之后, 将滤膜在 1 x SSC - 0. 1%SDS中于 55。C 洗 30min。 然后, 用 Phosphor Imager进行分析和定量。 Total RNA was extracted in one step [Ana l. Biochem 1987, 162, 156-159]. This method involves acid guanidinium thiocyanate phenol-chloroform extraction. That is, the tissue is homogenized with 4M guanidine isothiocyanate-25mM sodium citrate, 0.2M sodium acetate (pH4.0), and 1 volume of phenol and 1/5 volume of chloroform-isoamyl alcohol (49: 1) Centrifuge after mixing. The aqueous layer was aspirated, isopropanol (0.8 vol) was added and the mixture was centrifuged to obtain RM precipitate. The resulting RNA was precipitated at 70 ° / °. Wash with ethanol, dry and dissolve in water. With 20 g MA, electrophoresis was performed on a 1.2% agarose gel containing 20 mM 3- (N-morpholino) propanesulfonic acid (pH 7.0)-5 mM sodium acetate-IraM EDTA-2. 2M formaldehyde. It was then transferred to a nitrocellulose membrane. A- 32 P dATP was used to prepare 32 P-labeled DNA probes by random primers. The DNA probe used was the PCR amplified human kinesin 9 coding region sequence (2326bp to 2571bp) shown in FIG. 1. A 32P-labeled probe (approximately 2 x 10 6 cpm / ml) was hybridized with a nitrocellulose membrane to which RNA was transferred at 42 ° C overnight in a solution containing 50% formamide-25mM H 2 P0 4 (pH7. 4) -5 SSC-5 Denhardt's solution and 20 (^ g / ml salmon sperm DNA. After hybridization, the filter was washed in 1 x SSC-0.1% SDS at 55 ° C for 30 minutes. Then , Phosphor Imager was used for analysis and quantification.
实施例 5: 重组人驱动蛋白 9的体外表达、 分离和纯化 Example 5: In vitro expression, isolation and purification of recombinant human kinesin 9
根据 SEQ ID NO: 1和图 1所示的编码区序列, 设计出一对特异性扩增引物, 序 列如下: Based on SEQ ID NO: 1 and the coding region sequence shown in Figure 1, a pair of specific amplification primers were designed, the sequence is as follows:
Pr imer3: 5 - CATGCTAGCATGAAGGCAAAATGGCATGAGAAA -3' ( Seq ID No: 5 ) Pr imer4: 5'- CATGGATCCCTAGATTTTCTCATCTACCAGCAG -3' ( Seq ID No: 6 ) 此两段引物的 5'端分别含有 Nhel和 BamHI酶切位点, 其后分别为目的基因 5'端 和 3'端的编码序列, Nhel和 BamHI酶切位点相应于表达载体质粒 pET 28b (+) (Novagen 公司产品, Cat. No. 69865. 3)上的选择性内切酶位点。 以含有全长目的基因的 pBS- 0351c04质粒为模板, 进行 PCR反应。 PCR反应条件为: 总体积 50 μ 1中含 pBS- 0351c04 质粒 10pg、 引物 Pr imer- 3和 Pr imer - 4分另 'J为 10pmol、 Advantage polymerase Mix ( Clontech公司产品) 1 μ 1。 循环参数: 94。C 20s, 60°C 30s, 68。C 2 rain,共 25个 循环。 用 Nhel和 BamHI分别对扩增产物和质粒 pET- 28 (+)进行双酶切,分别回收大片 段,并用 T4连接酶连接。 连接产物转化用氯化钙法大肠杆细菌 DH5 a ,在含卡那霉素 (终浓度 30 g/ml ) 的 LB平板培养过夜后, 用菌落 PCR方法筛选阳性克隆, 并进行
测序。 挑选序列正确的阳性克隆(pET- 0351c04 )用氯化钙法将重组质粒转化大肠 杆菌 BL21 (DE3) plySs (Novagen公司产品)。 在含卡那霉素 (终浓度 30 g/ml ) 的 LB 液体培养基中, 宿主菌 BL21 ( pET- 0351c04 )在 37°C培养至对数生长期, 加入 IPTG 至终浓度 lmmol/L, 继续培养 5小时。 离心收集菌体, 经超声波破菌,离心收集上清, 用能与 6个组氨酸( 6His- Tag )结合的亲和层析柱 His. Bind Quick Cartr idge( Novagen 公司产品)进行层析,得到了纯化的目的蛋白人驱动蛋白 9。经 SDS- PAGE电泳,在 9KDa 处得到一单一的条带 (图 2 ) 。 将该条带转移至 PVDF膜上用 Edams水解法进行 N-端氨 基酸序列分析, 结果 N-端 15个氨基酸与 SEQ ID NO: 2所示的 N-端 15个氨基酸残基完 全相同。 Pr imer3: 5-CATGCTAGCATGAAGGCAAAATGGCATGAGAAA -3 '(Seq ID No: 5) Pr imer4: 5'- CATGGATCCCTAGATTTTCTCATCTACCAGCAG -3' (Seq ID No: 6) The 5 'ends of these two primers contain Nhel and BamHI restriction sites, respectively , Followed by the coding sequences of the 5 'and 3' ends of the gene of interest, respectively. The Nhel and BamHI restriction sites correspond to the selection on the expression vector plasmid pET 28b (+) (Novagen, Cat. No. 69865. 3) Sex endonuclease site. The PCR reaction was performed using the pBS-0351c04 plasmid containing the full-length target gene as a template. The PCR reaction conditions were as follows: a total volume of 50 μ1 containing 10 pg of pBS- 0351c04 plasmid, primers Primer 3 and Primer-4 points, and 'J was 10 pmol, Advantage polymerase Mix (Clontech) 1 μ1. Cycle parameters: 94. C 20s, 60 ° C 30s, 68. C 2 rain, a total of 25 cycles. Nhel and BamHI were used to double-digest the amplified product and plasmid pET-28 (+), respectively, and large fragments were recovered and ligated with T4 ligase. The ligation product was transformed into colibacillus DH5a by the calcium chloride method. After being cultured overnight on LB plates containing kanamycin (final concentration 30 g / ml), positive clones were selected by colony PCR method and performed. Sequencing. A positive clone (pET-0351c04) with the correct sequence was selected, and the recombinant plasmid was transformed into E. coli BL21 (DE3) plySs (product of Novagen) using the calcium chloride method. In LB liquid medium containing kanamycin (final concentration 30 g / ml), the host bacteria BL21 (pET-0351c04) was cultured at 37 ° C to the logarithmic growth phase, and IPTG was added to a final concentration of 1 mmol / L, and continued Incubate for 5 hours. The bacteria were collected by centrifugation, and the supernatant was collected by centrifugation. The supernatant was collected by centrifugation. The affinity chromatography column His. Bind Quick Cartr idge (product of Novagen) was used for chromatography. The purified human kinesin 9 was obtained. After SDS-PAGE electrophoresis, a single band was obtained at 9KDa (Figure 2). The band was transferred to a PVDF membrane and the N-terminal amino acid sequence was analyzed by the Edams hydrolysis method. As a result, the 15 amino acids at the N-terminus were identical to the 15 amino acid residues at the N-terminus shown in SEQ ID NO: 2.
实施例 6 抗人驱动蛋白 9抗体的产生 Example 6 Production of anti-human kinesin 9 antibodies
用多肽合成仪(PE公司产品)合成下述人驱动蛋白 9特异性的多肽: A peptide synthesizer (product of PE company) was used to synthesize the following human kinesin-specific peptides:
NH2-Me t -Lys-A 1 a-Ly s-Trp-Hi s-Gl u-Ly s -Ser-Leu-Lys-Tyr-G 1 n- G 1 u- A 1 a-COOH (SEQ ID NO: 7)。 将该多肽分别与血蓝蛋白和牛血清白蛋白耦合形成复合, 方法参 见: Avrameas, et al. Immunochemis try, 1969; 6: 430 用 4mg上述血蓝蛋白多狀复合 物加上完全弗氏佐剂免疫家兔, 15天后再用血蓝蛋白多肽复合物加不完全弗氏佐剂 加强免疫一次。 采用经 15 g/ml牛血清白蛋白多肽复合物包被的滴定板做 ELISA测 定兔血清中抗体的滴度。 用蛋白 A- Sepharose从抗体阳性的家兔血清中分离总 IgG。 将多肽结合于溴化氰活化的 Sepharose4B柱上, 用亲和层析法从总 IgG中分离抗多肽 抗体。 免疫沉淀法证明纯化的抗体可特异性地与人驱动蛋白 9结合。 NH2-Me t -Lys-A 1 a-Ly s-Trp-Hi s-Gl u-Ly s -Ser-Leu-Lys-Tyr-G 1 n- G 1 u- A 1 a-COOH (SEQ ID NO : 7). The peptide was coupled with hemocyanin and bovine serum albumin to form a complex. For methods, see: Avrameas, et al. Immunochemis try, 1969; 6: 43 0 4 mg of the hemocyanin polymorphic complex with complete Freund's adjuvant Rabbits were immunized, and 15 days later they were boosted with hemocyanin polypeptide complex and incomplete Freund's adjuvant. A titer plate coated with a 15 g / ml bovine serum albumin peptide complex was used as an ELISA to determine antibody titers in rabbit serum. Total IgG was isolated from antibody-positive rabbit sera using protein A-Sepharose. The peptide was bound to a cyanogen bromide-activated Sepharose4B column, and anti-peptide antibodies were separated from the total IgG by affinity chromatography. The immunoprecipitation method proved that the purified antibody could specifically bind to human kinesin-9.
实施例 7: 本发明的多核苷酸片段用作杂交探针的应用 Example 7: Application of the polynucleotide fragment of the present invention as a hybridization probe
从本发明的多核苷酸中挑选出合适的寡核苷酸片段用作杂交探针有多方面的 用途, 如用该探针可与不同来源的正常组织或病理组织的基因组或 cDNA文库杂交 以鉴定其是否含有本发明的多核苷酸序列和检出同源的多核苷酸序列,进一步还可 用该探针检测本发明的多核苷酸序列或其同源的多核苷酸序列在正常组织或病理 组织细胞中的表达是否异常。 Suitable oligonucleotide fragments selected from the polynucleotides of the present invention are used as hybridization probes in a variety of ways. For example, the probes can be used to hybridize to genomic or cDNA libraries of normal tissue or pathological tissue from different sources to It is determined whether it contains the polynucleotide sequence of the present invention and a homologous polynucleotide sequence is detected. Further, the probe can be used to detect the polynucleotide sequence of the present invention or its homologous polynucleotide sequence in normal tissue or pathology. Whether the expression in tissue cells is abnormal.
本实施例的目的是从本发明的多核苷酸 SEQ ID NO: 1 中挑选出合适的寡核苷 酸片段用作杂交探针, 并用滤膜杂交方法鉴定一些组织中是否含有本发明的多核 苷酸序列或其同源的多核苷酸序列。 滤膜杂交方法包括斑点印迹法、 Southern 印 迹法、 Northern 印迹法和复印方法等, 它们都是将待测的多核苷酸样品固定在滤 膜上后使用基本相同的步骤杂交。 这些相同的步骤是: 固定了样品的滤膜首先用 不含探针的杂交缓冲液进行预杂交, 以使滤膜上样品的非特异性的结合部位被载 体和合成的多聚物所饱和。 然后预杂交液被含有标记探针的杂交缓冲液替换, 并
保温使探针与靶核酸杂交。 杂交步骤之后, 未杂交上的探针被一系列洗膜步骤除 掉。 本实施例利用较高强度的洗膜条件(如较低盐浓度和较高的温度), 以使杂交 背景降低且只保留特异性强的信号。 本实施例选用的探针包括两类: 第一类探针 是完全与本发明的多核苷酸 SEQ ID NO: 1相同或互补的寡核苷酸片段; 第二类探 针是部分与本发明的多核苷酸 SEQ ID NO: 1相同或互补的寡核苷酸片段。 本实施 例选用斑点印迹法将样品固定在滤膜上, 在较高强度的的洗膜条件下, 第一类探 针与样品的杂交特异性最强而得以保留。 从本发明的多核苷酸 SEQ ID NO: 1中选择寡核苷酸片段用作杂交探针, 应遵 循以下原则和需要考虑的几个方面: The purpose of this embodiment is to select a suitable oligonucleotide fragment from the polynucleotide SEQ ID NO: 1 of the present invention as a hybridization probe, and to identify whether some tissues contain the polynucleoside of the present invention by a filter hybridization method. Acid sequence or a homologous polynucleotide sequence thereof. Filter hybridization methods include dot blotting, Southern blotting, Northern blotting, and copying methods. They all use the same steps of hybridization after fixing the polynucleotide sample to be tested on the filter. These same steps are as follows: The sample-immobilized filter is first pre-hybridized with a probe-free hybridization buffer, so that the non-specific binding site of the sample on the filter is saturated with the carrier and the synthetic polymer. The pre-hybridization solution is then replaced with a hybridization buffer containing labeled probes, and Incubation hybridizes the probe to the target nucleic acid. After the hybridization step, the unhybridized probes are removed by a series of membrane washing steps. This embodiment utilizes higher-intensity washing conditions (such as lower salt concentration and higher temperature) to reduce the hybridization background and retain only strong specific signals. The probes used in this embodiment include two types: the first type of probes are oligonucleotide fragments that are completely the same as or complementary to the polynucleotide SEQ ID NO: 1 of the present invention; the second type of probes are partially related to the present invention The polynucleotide SEQ ID NO: 1 is the same or complementary oligonucleotide fragment. In this embodiment, the dot blot method is used to fix the sample on the filter membrane. Under the high-intensity washing conditions, the first type of probe and the sample have the strongest hybridization specificity and are retained. The selection of oligonucleotide fragments from the polynucleotide SEQ ID NO: 1 of the present invention as hybridization probes should follow the following principles and several aspects to be considered:
1 , 探针大小优选范围为 18- 50个核苷酸; 1. The preferred range of probe size is 18-50 nucleotides;
2 , GC含量为 30%- 70%, 超过则非特异性杂交增加; 2, GC content is 30% -70%, non-specific hybridization increases when it exceeds;
3 , 探针内部应无互补区域; 3, there should be no complementary regions inside the probe;
4 , 符合以上条件的可作为初选探针, 然后进一步作计算机序列分析, 包括将该 初选探针分别与其来源序列区域 (即 SEQ ID NO: 1 )和其它巳知的基因组序列 及其互补区进行同源性比较, 若与非靶分子区域的同源性大于 85%或者有超过 15个连续碱基完全相同, 则该初选探针一般就不应该使用; 4. Those that meet the above conditions can be used as primary selection probes, and then further computer sequence analysis, including the primary selection probe and its source sequence region (ie, SEQ ID NO: 1) and other unknown genomic sequences and their complements The regions are compared for homology. If the homology with the non-target molecular region is greater than 85% or there are more than 15 consecutive bases, the primary probe should not be used;
5, 初选探针是否最终选定为有实际应用价值的探针还应进一步由实验确定。 5. Whether the preliminary selection probe is finally selected as a probe with practical application value should be further determined by experiments.
完成以上各方面的分析后挑选并合成以下二个探针: After completing the above analysis, select and synthesize the following two probes:
探针 1 ( probel ), 属于第一类探针, 与 SEQ ID NO: 1的基因片段完全同源或 互补(41Nt ): Probe 1 (probel), which belongs to the first type of probe, is completely homologous or complementary to the gene fragment of SEQ ID NO: 1 (41Nt):
5'- TGAAGGCAAAATGGCATGAGAAAAGTCTAAAGTATCAGGAA -3' ( SEQ ID NO: 8 ) 探针 2 ( probe2 ), 属于第二类探针, 相当于 SEQ ID NO: 1 的基因片段或其 互补片段的替换突变序列 (41Nt ): 5'- TGAAGGCAAAATGGCATGAGAAAAGTCTAAAGTATCAGGAA -3 '(SEQ ID NO: 8) Probe 2 (probe2), which belongs to the second type of probe, is equivalent to the replacement mutation sequence (41Nt) of the gene fragment or its complementary fragment of SEQ ID NO: 1
5 - TGAAGGCAAAATGGCATGAGCAAAGTCTAAAGTATCAGGAA -3' ( SEQ ID NO: 9 ) 与以下具体实验步骤有关的其它未列出的常用试剂及其配制方法请参考文 献: DNA PROBES G. H. Kel ler; M. M. Manak; S tockton Pres s, 1989 (USA)以及更常用 的分子克隆实验手册书籍如 《分子克隆实验指南》( 1998 年第二版) [美]萨姆布 鲁克等著, 科学出版社。 · 5-TGAAGGCAAAATGGCATGAGCAAAGTCTAAAGTATCAGGAA -3 '(SEQ ID NO: 9) For other common reagents and their preparation methods not listed in the following specific experimental procedures, please refer to the literature: DNA PROBES GH Kel ler; MM Manak; S tockton Pres s, 1989 (USA) and more commonly used molecular cloning laboratory manuals such as the "Molecular Cloning Experiment Guide" (Second Edition 1998) [US] Sambrook et al., Science Press. ·
样品制备: Sample Preparation:
1 , 从新鲜或冰冻组织中提取 DNA 1.Extract DNA from fresh or frozen tissue
步骤: 1 ) 将新鲜或新鲜解冻的正常肝组织放入浸在冰上并盛有磷酸盐缓冲液
(PBS) 的平皿中。 用剪刀或手术刀将组织切成小块。 搡作中应保持组织湿润。 2) 以 lOOOg离心切碎组织 10分钟。 3)用冷匀浆缓冲液 (0.25mol/L蔗糖; 25mmol/L Tris-HCl, pH7.5; 25mmol/LnaCl; 25mmol/L MgCl2 ) 悬浮沉淀(大约 10ml/g)。 4 ) 在 4°C用电动匀浆器以全速匀浆组织悬液, 直至组织被完全破碎。 5) lOOOg 离心 10分钟。 6)用重悬细胞沉淀(每 O. lg最初组织样品加 1- 5ml), 再以 lOOOg离心 10分钟。 7)用裂解缓冲液重悬沉淀(每 O.lg最初组织样品加 lml), 然后接以下 的苯酚抽提法。 Steps: 1) Place fresh or freshly thawed normal liver tissue in ice and hold phosphate buffered saline (PBS). Cut the tissue into small pieces with scissors or a scalpel. Tissue should be kept moist during operation. 2) Centrifuge the tissue at 1,000 g for 10 minutes. 3) Suspend the pellet (approximately 10 ml / g) with cold homogenization buffer (0.25 mol / L sucrose; 25 mmol / L Tris-HCl, pH 7.5; 25 mmol / LnaCl; 25 mmol / L MgCl 2 ). 4) Homogenize the tissue suspension at 4 ° C at full speed with an electric homogenizer until the tissue is completely broken. 5) Centrifuge at 1000g for 10 minutes. 6) Resuspend the cell pellet (1 to 5 ml per 0.1 g of the original tissue sample), and centrifuge at 1,000 g for 10 minutes. 7) Resuspend the pellet in lysis buffer (1 ml per 0.1 g of the initial tissue sample), and then follow the phenol extraction method below.
2, DNA的苯酚抽提法 2, DNA phenol extraction method
步骤: 1)用 1- 10ml冷 PBS洗细胞, lOOOg离心 10分钟。 2 )用冷细胞裂解液 重悬浮沉淀的细胞 ( 1 X 1G8细胞 /ml )最少应用 lOOul 裂解缓冲液。 3 )加 SDS 至 终浓度为 1%, 如果在重悬细胞之前将 SDS直接加入到细胞沉淀中, 细胞可能会形 成大的团块而难以破碎, 并降低的总产率。 这一点在抽提〉107细胞时特别严重。 4) 加蛋白酶 K至终浓度 200ug/ml。 5) 50°C保温反应 1小时或在 37°C轻轻振摇过夜。 6)用等体积苯酚: 氯仿: 异戊醇 ( 25: 24: 1 )抽提, 在小离心机管中离心 10分 钟。 两相应清楚分离, 否则重新进行离心。 7) 将水相转移至新管。 8)用等体积 氯仿: 异戊醇 (24: 1)抽提, 离心 10分钟。 9)将含 DNA的水相转移至新管。 然 后进行 DM的纯化和乙醇沉淀。 Steps: 1) Wash cells with 1-10 ml of cold PBS and centrifuge at 1000 g for 10 minutes. 2) Resuspend the pelleted cells (1 X 1G 8 cells / ml) with cold cell lysate and apply a minimum of 100ul lysis buffer. 3) Add SDS to a final concentration of 1%. If SDS is directly added to the cell pellet before resuspending the cells, the cells may form large clumps that are difficult to break, and reduce the overall yield. This is particularly serious when extracting> 10 7 cells. 4) Add proteinase K to a final concentration of 200ug / ml. 5) Incubate at 50 ° C for 1 hour or shake gently at 37 ° C overnight. 6) Extract with an equal volume of phenol: chloroform: isoamyl alcohol (25: 24: 1) and centrifuge in a small centrifuge tube for 10 minutes. The two should be clearly separated, otherwise centrifuge again. 7) Transfer the water phase to a new tube. 8) Extract with an equal volume of chloroform: isoamyl alcohol (24: 1) and centrifuge for 10 minutes. 9) Transfer the DNA-containing aqueous phase to a new tube. Purification of DM and ethanol precipitation were then performed.
3, DNA的纯化和乙醇沉淀 3, DNA purification and ethanol precipitation
步骤: 1 )将 1/10体积 2mol/L醋酸钠和 2倍体积冷 100%乙醇加到 DNA溶液中, 混匀。 在- 20。C放置 1小时或至过夜。 2) 离心 10分钟。 3)小心吸出或倒出乙醇。 4)用 70%冷乙醇 500ul洗涤沉淀, 离心 5分钟。 5)小心吸出或倒出乙醇。 用 500ul 冷乙醇洗涤沉淀, 离心 5分钟。 6)小心吸出或倒出乙醇, 然后在吸水纸上倒置使 残余乙醇流尽。 空气干燥 10-15 分钟, 以使表面乙醇挥发。 注意不要使沉淀完全 干燥, 否则较难重新溶解。 7) 以小体积 TE或水重悬 DNA沉淀。 低速涡旋振荡或 用滴管吹吸, 同时逐渐增加 TE, 混合至 DNA充分溶解, 每 1-5χ 10ό细胞所提取的 大约加 lul。 Steps: 1) Add 1/10 volume of 2mol / L sodium acetate and 2 volumes of cold 100% ethanol to the DNA solution and mix. At -20. C Let stand for 1 hour or overnight. 2) Centrifuge for 10 minutes. 3) Carefully aspirate or pour out the ethanol. 4) Wash the pellet with 500ul of 70% cold ethanol and centrifuge for 5 minutes. 5) Carefully aspirate or pour out the ethanol. Wash the pellet with 500ul of cold ethanol and centrifuge for 5 minutes. 6) Carefully aspirate or pour out the ethanol, then invert on the absorbent paper to drain off the residual ethanol. Air dry for 10-15 minutes to allow the surface ethanol to evaporate. Be careful not to allow the pellet to dry completely, otherwise it will be more difficult to re-dissolve. 7) Resuspend the DNA pellet in a small volume of TE or water. Low-speed vortexing or pipetting, with a dropper, while gradually increasing the TE, mixed until fully dissolved DNA, each 1-5χ 10 ό extracted cells plus about lul.
以下第 8-13步骤仅用于必须除去污染时, 否则可直接进行第 14步骤。 The following steps 8-13 are only used when contamination must be removed, otherwise step 14 can be performed directly.
8 )将 RNA酶 A加到 DNA溶液中, 终浓度为 lOOug/ral, 37°C保温 30分钟。 9 )加 入 SDS和蛋白酶 K, 终浓度分别为 0.5%和 100ug/ml。 37°C保温 30分钟。 10)用 等体积的苯酚: 氯仿: 异戊醇 ( 25: 24: 1 )抽提反应液, 离心 10 分钟。 11)小 心移出水相, 用等体积的氯仿: 异戊醇 (24: 1) 重新抽提, 离心 10 分钟。 12) 小心移出水相, 加 1八 0体积 2mol/L醋酸钠和 2.5体积冷乙醇, 混匀置 -20°C 1小
时。 13)用 70%乙醇及 100%乙醇洗涤沉淀, 空气干燥, 重悬核酸, 过程同第 3-6 步骤。 14)测定 A26。和 Α28β以检测 DNA的纯度及产率。 15)分装后存放于 -20°C。 样膜的制备: 8) Add RNase A to the DNA solution to a final concentration of 100ug / ral, and incubate at 37 ° C for 30 minutes. 9) Add SDS and proteinase K, the final concentrations are 0.5% and 100ug / ml. Incubate at 37 ° C for 30 minutes. 10) Extract the reaction solution with an equal volume of phenol: chloroform: isoamyl alcohol (25: 24: 1) and centrifuge for 10 minutes. 11) Carefully remove the aqueous phase and re-extract with an equal volume of chloroform: isoamyl alcohol (24: 1) and centrifuge for 10 minutes. 12) Carefully remove the water phase, add 180 vols of 2mol / L sodium acetate and 2.5 vols of cold ethanol, and mix well at -20 ° C for 1 hour. Time. 13) Wash the pellet with 70% ethanol and 100% ethanol, air dry, and resuspend the nucleic acid. The process is the same as steps 3-6. 14) Determine A 26 . And A 28β to detect DNA purity and yield. 15) Store at -20 ° C after dispensing. Preparation of sample film:
1)取 4x2 张适当大小的硝酸纤维素膜(NC膜), 用铅笔在其上轻轻标出点样 位置及样号, 每一探针需两张 NC膜, 以便在后面的实验步骤中分别用高强度条件 和强度条件洗膜 。 1) Take 4x2 pieces of nitrocellulose membranes (NC membranes) of appropriate size, and mark the spotting position and sample number on it with a pencil. Two NC membranes are required for each probe, so that they can be used in the following experimental steps. The film was washed with high-strength conditions and strength conditions, respectively.
2) 吸取及对照各 15微升, 点于样膜上, 在室温中晾干。 2) Pipette and control 15 microliters each, spot on the sample film, and dry at room temperature.
3) 置于浸润有 0. Imol/LNaOH, 1.5mol/LNaCl 的滤纸上 5分钟 (两次), 晾干置 于浸润有 0.5mol/L Tris-HCl ( pH7.0 ), 3mol/LNaCl的滤纸上 5分钟 (两次), 晾 干。 3) Place on filter paper impregnated with 0.1 mol / L NaOH, 1.5 mol / L NaCl for 5 minutes (twice), dry and place on filter paper impregnated with 0.5 mol / L Tris-HCl (pH 7.0), 3 mol / L NaCl Allow to dry for 5 minutes (twice).
4)夹于干净滤纸中, 以铝箔包好, 60- 80。C真空干燥 2小时。 4) Clamp it in clean filter paper and wrap it with aluminum foil, 60-80. C was dried under vacuum for 2 hours.
探针的标记 Labeling of probes
1 ) 3μ lProbe ( 0.10D/10 μ 1 ), 加入 2 μ IKinase缓冲液, 8-10 uCi y-32P-dATP+2U Kinase, 以补加至终体积 20 μ 1。 1) 3 μl Probe (0.10D / 10 μ 1), add 2 μ IKinase buffer, 8-10 uCi y- 32 P-dATP + 2U Kinase, to make up to a final volume of 20 μ 1.
2 ) 37 °C 保温 2小时。 2) Incubate at 37 ° C for 2 hours.
3)加 1/5体积的溴酚蓝指示剂 (BPB)。 3) Add 1/5 volume of Bromophenol Blue Indicator (BPB).
4 )过 Sephadex G-50柱。 4) Pass through a Sephadex G-50 column.
5 ) 至有 32P- Probe洗出前开始收集第一峰(可用 Monitor监测)。 5) Before the 32 P-Probe is washed out, start collecting the first peak (can be monitored by Monitor).
6) 5滴 /管, 收集 10- 15管。 6) 5 drops / tube, collect 10-15 tubes.
7 )用液体闪烁仪监测同位素量 7) Monitor the amount of isotope with a liquid scintillator
8) 合并第一峰的收集液后即为所需制备的 32P- Probe (第二峰为游离 γ- 32P- dATP )0 8) The 32 P- Probe (the second peak is free γ- 32 P- dATP) after the collection of the first peak is combined. 0
预杂交 Pre-hybridization
将样膜置于塑料袋中 ,加入 3- 10mg预杂交液( lOxDenhardt-s; 6xSSC, 0. lmg/ml CT DNA (小牛胸腺 DNA )。 ), 封好袋口后, 68°C水洛摇 2小时。 Put the sample film in a plastic bag, add 3-10 mg of prehybridization solution (lOxDenhardt-s; 6xSSC, 0.1 mg / ml CT DNA (calf thymus DNA).), After sealing the bag, 68 ° C water Luo Shake for 2 hours.
杂交 Cross
将塑料袋剪去一角, 加入制备好的探针, 封好袋口后, 42°C水浴摇过夜。 洗膜: Cut a corner of the plastic bag, add the prepared probe, seal the bag, and shake it at 42 ° C in a water bath overnight. Wash film:
高强度洗膜: High-intensity washing film:
1) 取出已杂交好的样膜。 1) Take out the hybridized sample membrane.
2 ) 2xSSC, 0.1%SDS中, 40°C洗 15分钟 ( 2次)。 2) 2xSSC, 0.1% SDS, wash at 40 ° C for 15 minutes (twice).
3 ) 0. lxSSC, 0.1 SDS中, 40°C洗 15分钟 ( 2次)。
4 ) 0. lxSSC, 0. 1%SDS中, 55。C洗 30分钟 ( 2次), 室温晾干。 3) Wash in 0.1xSSC, 0.1 SDS for 15 minutes at 40 ° C (twice). 4) 0.1xSSC, 0.1% SDS, 55. Wash for 30 minutes (twice) and dry at room temperature.
低强度洗膜: Low-intensity washing film:
1 )取出已杂交好的样膜。 1) Take out the hybridized sample membrane.
2 ) 2xSSC, 0. 1%SDS中, 37°C洗 15分钟 ( 2次)。 2) 2xSSC, 0.1% SDS, wash at 37 ° C for 15 minutes (twice).
3 ) 0. lxSSC, 0. l°/oSDS中 , 37°C洗 15分钟 ( 2次)。 3) Wash in 0.1xSSC, 0.1 ° / oSDS at 37 ° C for 15 minutes (twice).
4 ) 0. lxSSC, 0. 1%SDS中, 40°C洗 15分钟 ( 2次), 室温晾干。 4) Wash in 0.1xSSC, 0.1% SDS at 40 ° C for 15 minutes (twice), and dry at room temperature.
X-光自显影: X-ray auto-development:
-70°C, X-光自显影 (压片时间根据杂交斑放射性强弱而定)。 -70 ° C, X-ray autoradiography (pressing time depends on the radioactivity of the hybrid spot).
实验结果: Experimental results:
采用低强度洗膜条件所进行的杂交实验, 以上两个探针杂交斑放射性强弱没 有明显区别; 而釆用高强度洗膜条件所进行的杂交实验, 探针 1 的杂交斑放射性 强度明显强于另一个探针杂交斑的放射性强度。 因而可用探针 1 定性和定量地分 析本发明的多核苷酸在不同组织中的存在和差异表达。 The hybridization experiments performed under low-intensity membrane washing conditions showed no significant difference in the radioactive intensity of the above two probes. However, in the hybridization experiments performed under high-intensity membrane washing conditions, the radioactive intensity of probe 1 was significantly stronger. To the radioactive intensity of the hybridization spot of another probe. Therefore, the presence and differential expression of the polynucleotide of the present invention in different tissues can be analyzed qualitatively and quantitatively with the probe 1.
实施例 8 DNA Microarray Example 8 DNA Microarray
基因芯片或基因微矩阵 (DM' Microarray )是目前许多国家实验室和大制药 公司都在着手研制和开发的新技术, 它是指将大量的靶基因片段有序地、 高密度 地排列在玻璃、 硅等载体上, 然后用荧光检测和计算机软件进行数据的比较和分 析, 以达到快速、 高效、 高通量地分析生物信息的目的。 本发明的多核苷酸可作 为靶 DM 用于基因芯片技术用于高通量研究新基因功能; 寻找和筛选组织特异性 新基因特别是肿瘤等疾病相关新基因; 疾病的诊断, 如遗传性疾病。 其具体方法 步骤在文献中已有多种报道, 如可参阅文献 DeRi s i, J. L. , Lyer, V. &Brown, P. 0. (1997) Science278, 680-686.及文献 Hel le, R. A. , Schema, M. , Cha i, A. , Sha lom, D. , (1997) PNAS 94: 2150-2155. Gene chip or gene microarray (DM 'Microarray) is a new technology currently being developed by many national laboratories and large pharmaceutical companies. It refers to the orderly and high-density arrangement of a large number of target gene fragments on glass. , Silicon and other carriers, and then use fluorescence detection and computer software to compare and analyze the data, in order to achieve the purpose of rapid, efficient, high-throughput analysis of biological information. The polynucleotide of the present invention can be used as a target DM for gene chip technology for high-throughput research of new gene functions; searching for and screening new tissue-specific genes, especially new genes related to diseases such as tumors; diagnosis of diseases such as hereditary diseases . The specific method steps have been reported in the literature. M., Cha i, A., Sha lom, D., (1997) PNAS 94: 2150-2155.
(一) 点样 (A) spotting
各种不同的全长 cDNA共计 4000条多核苷酸序列作为靶 DNA,其中包括本发明 的多核苷酸。 将它们分别通过 PCR 进行扩增, 纯化所得扩增产物后将其浓度调到 500ng/ul左右, 用 Cartes ian 7500点样仪(购自美国 Cartes ian公司)点于玻璃介 质上, 点与点之间的距离为 280 μ πι。 将点样后的玻片进行水合、 干燥、 置于紫外 交联仪中交联, 洗脱后干燥使 鳳 固定在玻璃片上制备成芯片。 其具体方法步骤 在文献中已有多种报道, 本实施例的点样后处理步骤是: A total of 4,000 polynucleotide sequences of various full-length cDNAs are used as target DNA, including the polynucleotide of the present invention. They were respectively amplified by PCR. After purification, the concentration of the amplified product was adjusted to about 500 ng / ul, and spotted on a glass medium with a Cartesian 7500 spotter (purchased from Cartesian Company, USA). The distance between them is 280 μm. The spotted slides were hydrated, dried, and cross-linked in a UV cross-linker. After elution, the slides were fixed on the glass slides to prepare chips. The specific method steps have been variously reported in the literature. The post-spotting processing steps of this embodiment are:
1. 潮湿环境中水合 4小时; 1. Hydration in a humid environment for 4 hours;
2. 0. 2%SDS洗涤 1分钟;
3. ddH20洗涤两次, 每次 1分钟; 2. 0.2% SDS was washed for 1 minute; 3. Wash twice with ddH 2 0 for 1 minute each time;
4. NaBH4封闭 5分钟; 4. NaBH 4 is blocked for 5 minutes;
5. 95°C水中 2分钟; 5. 95 ° C water for 2 minutes;
6. 0.2%SDS洗涤 1分钟; 6. Wash with 0.2% SDS for 1 minute;
7. ddH20冲洗两次; 7. Rinse twice with ddH 2 0;
8. 凉干, 25°C储存于暗处备用。 8. Dry and store at 25 ° C in the dark for future use.
(二)探针标记 (Two) probe marking
用一步法分别从正常肝与肝癌中抽提总 mRNA, 并用 Oligotex mRNA Midi Kit (购自 QiaGen公司)纯化 mRNA,通过反转录分别将荧光试剂 Cy3dUTP (5-Amino- propargyl-2'-deoxyuridine 5'-triphate coupled to Cy3 fluorescent dye , 购 自 Amersham Pharaacia Biotech 公司)标记正常肝组织的 mRNA, 用荧光试剂 Cy5dUTP (5-Amino-propargyl~2'-deoxyuridine 5' - triphate coupled to Cy5 fluorescent dye, 购自 Amersham Phamacia Biotech公司)标记肝癌组织 mRNA, 经纯化后制备出探针。 具体步骤参照及方法见: Total mRNA was extracted from normal liver and liver cancer in one step, and the mRNA was purified using Oligotex mRNA Midi Kit (purchased from QiaGen). The fluorescent reagent Cy3dUTP (5-Amino- propargyl-2'-deoxyuridine 5) was separately reverse-transcribed. '-triphate coupled to Cy3 fluorescent dye (purchased from Amersham Pharaacia Biotech) was used to label the mRNA of normal liver tissue, and the fluorescent reagent Cy5dUTP (5-Amino-propargyl ~ 2'-deoxyuridine 5'-triphate coupled to Cy5 fluorescent dye, purchased from (Amersham Phamacia Biotech) was used to label liver cancer tissue mRNA, and the probe was prepared after purification. For specific steps and methods, see:
Schena, M. , Shalon, D., Heller, R. (1996) Proc. Natl. Acad. Sci. USA. Vol.93: 10614- 10619. Schena, M., Shalon, Dari. , Davis, R. Ψ. (1995) Science.270. (20): 467-480.Schena, M., Shalon, D., Heller, R. (1996) Proc. Natl. Acad. Sci. USA. Vol. 93: 10614- 10619. Schena, M., Shalon, Dari., Davis, R. Ψ (1995) Science. 270. (20): 467-480.
(三) 杂交 (Three) cross
分别将来自 以上两种组织的探针与芯片一起在 UniHyb™ Hybridization Solution (购自 TeleChein公司)杂交液中进行杂交 16 小时, 室温用洗涤液 (l x SSC, 0.2%SDS ) 洗涤后用 ScanArray 3000扫描仪(购自美国 General Scanning公 司)进行扫描, 扫描的图象用 Imagene软件(美国 Biodiscovery公司)进行数据 分析处理, 算出每个点的 Cy3/Cy5 比值, 该比值小于 0.5大于 2 的点被认为是表 达有差异的基因。 The probes from the two types of tissues and the chips were hybridized in a UniHyb ™ Hybridization Solution (purchased from TeleChein) for 16 hours, and then washed with a washing solution (lx SSC, 0.2% SDS) at room temperature and scanned with ScanArray 3000. Instrument (purchased from General Scanning Company, USA) for scanning, and the scanned image was analyzed and processed with Imagene software (Biodiscovery Company, USA), and the Cy3 / Cy5 ratio of each point was calculated. The points with the ratio less than 0.5 and greater than 2 were considered as Differentially expressed genes.
实验结果表明, Cy3 signal=1846.33 (取四次实验的平均值) , Cy5signal=1457.41 (取四次实验的平均值) ,Cy3/Cy5=1.26686,本发明的多核苷酸在以上两种组织中 的表达无明显差异。
The experimental results show that Cy3 signal = 1846.33 (average of four experiments), Cy5signal = 1457.41 (average of four experiments), Cy3 / Cy5 = 1.26686, the polynucleotide of the present invention in the above two tissues No significant difference in expression.