WO2001029020A2 - Neuraminidase inhibitors - Google Patents
Neuraminidase inhibitors Download PDFInfo
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- WO2001029020A2 WO2001029020A2 PCT/US2000/027090 US0027090W WO0129020A2 WO 2001029020 A2 WO2001029020 A2 WO 2001029020A2 US 0027090 W US0027090 W US 0027090W WO 0129020 A2 WO0129020 A2 WO 0129020A2
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- 0 C*NC(C)=C(N)N Chemical compound C*NC(C)=C(N)N 0.000 description 1
- KHTBZHLRQOGIDF-XQRVVYSFSA-N CC(C)/C(/C)=C\F Chemical compound CC(C)/C(/C)=C\F KHTBZHLRQOGIDF-XQRVVYSFSA-N 0.000 description 1
- JMKPUUBHTVYCLU-UHFFFAOYSA-N CC(C)C1=NCCC=N1 Chemical compound CC(C)C1=NCCC=N1 JMKPUUBHTVYCLU-UHFFFAOYSA-N 0.000 description 1
- UQFQONCQIQEYPJ-UHFFFAOYSA-N C[n]1nccc1 Chemical compound C[n]1nccc1 UQFQONCQIQEYPJ-UHFFFAOYSA-N 0.000 description 1
- LVILGAOSPDLNRM-UHFFFAOYSA-N Cc1ccncn1 Chemical compound Cc1ccncn1 LVILGAOSPDLNRM-UHFFFAOYSA-N 0.000 description 1
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D309/00—Heterocyclic compounds containing six-membered rings having one oxygen atom as the only ring hetero atom, not condensed with other rings
- C07D309/16—Heterocyclic compounds containing six-membered rings having one oxygen atom as the only ring hetero atom, not condensed with other rings having one double bond between ring members or between a ring member and a non-ring member
- C07D309/28—Heterocyclic compounds containing six-membered rings having one oxygen atom as the only ring hetero atom, not condensed with other rings having one double bond between ring members or between a ring member and a non-ring member with hetero atoms or with carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, e.g. ester or nitrile radicals, directly attached to ring carbon atoms
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P31/00—Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
- A61P31/12—Antivirals
- A61P31/14—Antivirals for RNA viruses
- A61P31/16—Antivirals for RNA viruses for influenza or rhinoviruses
Definitions
- the present invention relates to novel compounds, compositions, and methods for inhibiting neuraminidase
- neuraminidase also known as sialidase
- viruses of the orthomyxovirus and paramyxovirus groups possess a neuraminidase.
- Diseases associated with paramyxoviruses include RSV (respiratory syncytial virus- related diseases) , pneumonia and bronchiolitis (associated with paramyxovirus type 3) and laryngotracheobronchitis (associated with paramyxovirus type 1) .
- Some of the more important disease-causing microorganisms in man and/or animals which possess a neuraminidase include Vibrio cholerae, Clostridium perfringens, Streptococcus pneumoniae, Arthrobacter sialophilus, influenza virus, parainfluenza virus, mumps virus, Newcastle disease virus, fowl plague virus, equine influenza virus and Sendai virus.
- influenza virus Mortality due to influenza is a serious problem throughout the world. The disease is devastating to man, lower mammals and some birds. Although vaccines containing attenuated influenza virus are available, those vaccines only provide immunological protection toward a few influenza strains and are less effective in otherwise immunologically compromised populations such as the elderly, young children, and in those who suffer from chronic respiratory illness. The productivity loss from absence due to sickness from influenza virus infection has been estimated to be more than $1 billion per year. There are two major strains of influenza virus (designated A and B) . Currently, there are only a few pharmaceutical products approved for treating influenza. These include amantadine and rimantadine, which are active only against the A strain of influenza viruses, and ribavirin, which suffers from dose-limiting toxicity. Mutant virus which is resistant to amantadine and rimantadine emerges quickly during treatment with these agents .
- Neuraminidase is one of two major viral proteins which protrude from the envelope of influenza virus. During the release of progeny virus from infected cells, neuraminidase cleaves terminal sialic acid residues from glycoproteins, glycolipids and oligosaccharides on the cell surface. Inhibition of neuraminidase enzymatic activity leads to aggregation of progeny virus at the surface. Such virus is incapable of infecting new cells, and viral replication is therefore retarded or blocked.
- siastatin B analogs that are useful as neuraminidase inhibitors:
- the present invention relates to compounds which are neuraminidase inhibitors .
- the instant invention additionally relates to pharmaceutical compositions containing a compound of the invention and the use of said compounds in the inhibition of neuraminidase, as well as the treatment of influenza thereby.
- the invention still further relates to a method for selecting a compound which inhibits neuraminidase.
- Figure 1 illustrates Sites of Occupation 1 through 4 within the neuraminidase active site. 2.0 Angstrom (small) and 3.0 Angstrom (large) spheres are shown for each of the four sites.
- the inhibitor 4-Gua-Neu5Ac2en (thick black lines) and protein (thin black lines) are taken from Protein Data Bank entry 1NNC.
- the present invention provides compounds which are neuraminidase inhibitors. Said compounds, when bound to the enzyme, are characterized by a unique three-dimensional conformation and orientation relative to the neauraminidase .
- a compound of the present invention binds to the ectodomain of influenza neuraminidase and inhibits the catalytic activity of that enzyme. By binding to the ectodomain of neuraminidase, the compounds prevent the catalytic action of this enzyme, and thereby, exhibit antiviral action upon the influenza virus.
- the inhibitor binds to the active site of influenza neuraminidase, which active site is well known in the art (P.M. Colman, J.N. Varghese & W. G.
- the inhibitor When bound to the enzyme active site, the inhibitor possesses substituent groups, of which at least one atom or a centroid is contained within various Sites of Occupation, as defined below.
- the Site of Occupation volume is defined by locating the center point of a spherical volume together with a defined radius around that center point.
- the center point of the spherical volume is defined by the point of intersection of vectors of a certain length (loci) emanating from particular alpha carbon atoms of the bound neuraminidase enzyme.
- any of the alpha carbons of the bound neuraminidase enzyme can be used as points of reference.
- the reference points for location of the center point include the alpha carbons of protein residues within the neuraminidase enzyme.
- Protein X-ray crystal structures of influenza neuramindase at atomic resolution have shown that while non-active site insertions, deletions, and residue variation can occur between neuraminidase enzymes from different strains and subtypes, the active site residues are conserved and spatially equivalent.
- numbering of protein residues and reference to their alpha carbons may refer to different sequence numbering, but refer to identical positions in 3 -dimensional atomic space.
- a table of equivalent residues for three sequences of influenza neuraminidase, N2/Tokyo67, N9/Tern, and B/Lee is provided in Table 1 hereinbelow.
- the 3-dimensional structure has been determined by protein x-ray crystallography, and the coordinates are available from the Protein Data Bank under the accession codes IIVF, INNC, and 1B9S, respectively.
- Only the residues of influenza neuraminidase from strain B/Lee will be used in the definition of the Sites of Occupation, but it is understood that the corresponding residues as provided below in Table 1 from other neuraminidase enzymes are encompassed by the discussion.
- the volume is of spherical shape and has its center point defined by loci selected from the group of loci consisting of 8.9 to 9.9 Ang from the alpha carbon of residue 116, 10.4 to 11.4 Ang from the alpha carbon of residue 292, 9.5-10.5 Ang from the alpha carbon of residue 374, and 7.6-8.6 Ang from the alpha carbon of residue 409.
- Site 2 The volume is of spherical shape and has its center point defined by loci selected from the group of loci consisting of 6.2 to 7.2 Ang from the alpha carbon of residue 117, 3.7-4.7 Ang from the alpha carbon of residue 149, 5.0-6.0 Ang from the alpha carbon of residue 177, and 7.5 to 8.5 Ang from the alpha carbon of residue 226.
- the volume is of spherical shape and has its center point defined by loci selected from the group of loci consisting of 6.4 to 7.4 Ang from the alpha carbon of residue 150, 6.6-7.6 Ang from the alpha carbon of residue 177, 6.1-7.1 Ang from the alpha carbon of residue 221, and 4.8 to 5.8 Ang from the alpha carbon of residue 223.
- the volume is of spherical shape and has its center point defined by loci selected from the group of loci consisting of 5.7-6.7 Ang from the alpha carbon of residue 149, 8.8-9.8 Ang from the alpha carbon of residue 226, 9.2- 10.2 Ang from the alpha carbon of residue 245, and 8.9-9.9 Ang from the alpha carbon of residue 409.
- a substituent is considered to be within a Site of Occupation if any atom of that substituent is within the Site of Occupation.
- An atom is within the Site of Occupation if the coordinates for the center of that atom are within the volume defined for a particular Site of Occupation. Definition of the Volume Defined at each Site of Occupation
- the volume of space defined at each Site of Occupation is defined by spheres of a given radius emanating from the loci given above. It is understood that spheres of lower radius claim smaller volumes, and thus in turn, encompass fewer molecules. Most preferred are radii of 4.0 Angstroms or less, prefered are radii of 2.0 or 3.0 Angstoms or less, less prefered are radii of 1.0 Angstrom or less. An atom of a substituent is within this volume if the coordinates for the center of that atom fall within the volume defined for a particular Site of Occupation. In the case of Site of Occupation 4, a substituent/ring system is within this volume if the centroid of the ring atoms is found within the volume.
- a centroid of a ring is defined as the geometric or arithmetic centerpoint of the coordinates of the atoms that comprise the ring.
- Means for determining the spatial orientation of a compound of this invention are well known in the art.
- One preferred method for determination of the spatial orientation of a neuraminidase inhibitor is by the technique of X-ray crystallography.
- the process of determining the structures of protein/inhibitor complexes using the X-ray technique is well known (see T. L. Blundel and L. N. Johnson, Protein Crystallography, Academic Press, (1976) and Methods in Enzymology, volumes 114 and 115, H. W. Wyckoff et al . , eds . , Academic Press (1985)).
- This technique can employ, for instance, a highly purified preparation of neuraminidase in a buffered solution (typically at a pH of between about 4.5 and about 8.0) .
- the complex is allowed to crystallize in the presence of a precipitation agent (such as ammonium sulfate) under conditions which yield single crystals of the complex.
- a precipitation agent such as ammonium sulfate
- crystallizing neuraminidase with various inhibitors have been well documented (see, for example P.M. Colman, Protein Science, 3, 1687-1696 (1994)).
- crystals of un-inhibited neuraminidase can be grown and inhibitors soaked into the crystal lattice and the structure determined.
- Typical soaking conditions employ, for instance, placing a crystal of uninhibited neuraminidase into a buffered solution at pH 7.0.
- An amount of the compound of interest is dissolved in a cosolvent, for example dimethyl sulfoxide, and an aliquot of this inhibitor solution added to the liquid containing the crystal.
- the crystal After sitting for a time not shorter than 15 minutes nor longer than 30 days, the crystal is removed from the liquid and applied to a x-ray diffraction device.
- Application of a concentrated X-ray beam (from rotating anode X-ray generator or synchrotron) to an appropriately prepared and mounted crystal will yield a diffraction pattern from the reflected X-ray beam.
- Detection of the diffracted rays may be carried out by using a multiwire area detector (such as that manufactured by Siemmens Analytical X-Ray Instruments, Inc. (Madison, WI) ) or an R- axis II image plate system from Rigaku Corporation, The Woodlands, TX) .
- Visualization of the complex of neuraminidase and an inhibitor may be carried out using computer software such as Insightll (Biosym/Molecular Simulations, Inc., San Diego) or Quanta (Molecular Simulations, Inc., Burlington MA) , and distances and spherical volumes may be generated using tools available within those programs.
- Insightll Biosym/Molecular Simulations, Inc., San Diego
- Quanta Molecular Simulations, Inc., Burlington MA
- distances and spherical volumes may be generated using tools available within those programs.
- An example of the use of X-ray crystallography in determining the spatial orientation of a neuraminidase inhibitor in B/Lee influenza neuraminidase protein is found in Janakiraman, M. N. et al., Biochemistry, 33, 8172-8179 (1994).
- a second means for determining spatial orientation is the technique of Nuclear Magnetic Resonance (NMR) Spectroscopy .
- NMR Nuclear Magnetic Resonance
- This technique can employ, for instance, a preparation of neuraminidase complexed with an inhibitor of interest in a buffered solution (typically at a pH of between about 3.0 and about 8.0) . Either single or multi-dimensional techniques may be applied.
- the enzyme and/or the inhibitor may be enriched with stable isotopes such as 13 C, 15 N, or 2 H to more easily determine the binding conformation and proximity.
- the NMR technique will yield a structure which has no distance violation greater than about 0.3 A, and an RMS deviation between the family of structures generated from the average structure of about 0.6 A.
- these values are adequate to determine the interactions between neuraminidase and a given compound such that it will be clear if the features described herein are present.
- Visualization of the complex of neuraminidase and an inhibitor may be carried out using computer software such as Insightll (Biosym/Molecular Simulations, Inc., San Diego) or Quanta (Molecular Simulations, Inc., Burlington MA) , and distances and spherical volumes may be generated using tools available within those programs.
- a third means for determining spatial orientation is the technique of Molecular Modeling. This process of creating theoretical models of protein-inhibitor complexes is well known (see G. L. Seibel and P. A. Kollman, "Molecular Mechanics and the Modeling of Drug Structures, Ch. 18.2 in Comprehensive Medicinal Chemistry, C. Hansch, Ed., Pergammon Press, (1990) and T.J. Perun and C. L. Propst, Eds. Computer-Aided Drug Design, Marcel Dekker, Inc. (1989)). Computer software such as Insightll
- Both Van der Waals volume and electrostatic potentials are used to direct the alignment process.
- the protein and inhibitor molecules are allowed to achieve conformations that are lower in energy from the initial starting geometry by energy minimization in which a force field is used to mathematically search for the lowest energy conformation.
- Suitable force fields such as AMBER (S. J. Weiner et al, Journal of Computational Chemistry, 7, 230-252 (1986) or CVFF (J. R. Maple et al, Journal of Computational Chemistry, 15, 162-182 (1994)) are available within the software listed above.
- energy minimization of the inhibitor is initially carried out with the enzyme atoms held fixed in space followed by more extensive energy minimization of the entire protein/inhibitor complex. Conformational searching
- Visualization of the complex of neuraminidase and an inhibitor may be carried out using computer software such as Insightll (Biosym/Molecular Simulations, Inc., San Diego) or Quanta (Molecular Simulations, Inc., Burlington MA), and distances and spherical volumes may be generated using tools available within those programs.
- a compound of formula I is known in the art as 4-Guanidino-Neu5Ac2en.
- a compound of formula I is further represented in Figure 1, wherein the binding of said compound to the active site of the neuraminidase enzyme is depicted.
- the compound of formula I possesses s carboxylate substituent within Site of Occupation 1, a guanidine substituent within Site of Occupation 2, and amide group within Site of Occupation 3, and the centroid of a 6-membered non-aromatic ring within Site of Occupation
- the compounds of the present invention can be used in the form of salts derived from inorganic or organic acids.
- These salts include but are not limited to the following: acetate, trifluoroacetate, adipate, alginate, citrate, aspartate, benzoate, benzenesulfonate, bisulfate, butyrate, camphorate, camphorsulfonate, digluconate, cyclopentanepropionate, dodecylsulfate, ethanesulfonate, glucoheptanoate, glycerophosphate, hemisulfate, heptanoate, hexanoate, fumarate, hydrochloride, hydrobromide , hydroiodide, 2-hydroxy-ethanesulfonate (isethionate) , lactate, maleate, methanesulfonate, nicotinate, 2- naphthalenesulfonate, oxalate
- basic nitrogen- containing groups can be quaternized with such agents as lower alkyl halides, such as methyl, ethyl, propyl, and butyl chloride, bromides, and iodides; dialkyl sulfates like dimethyl, diethyl, dibutyl, and diamyl sulfates, long chain halides such as decyl, lauryl, myristyl and stearyl chlorides, bromides and iodides, aralkyl halides like benzyl and phenethyl bromides, and others. Water or oil- soluble or dispersible products are thereby obtained.
- lower alkyl halides such as methyl, ethyl, propyl, and butyl chloride, bromides, and iodides
- dialkyl sulfates like dimethyl, diethyl, dibutyl, and diamyl sulfates
- long chain halides
- acids which may be employed to form pharmaceutically acceptable acid addition salts include such inorganic acids as hydrochloric acid, hydrobromic acid, sulfuric acid and phosphoric acid and such organic acids as oxalic acid, maleic acid, succinic acid and citric acid.
- Other salts include salts with alkali metals or alkaline earth metals, such as sodium, potassium, lithium, calcium or magnesium or with ammonium or N(R**)4+ salts (where R** is loweralkyl) .
- salts of the compounds of this invention with one of the naturally occurring amino acids are also contemplated.
- Preferred salts of the compounds of the invention include hydrochloride, methanesulfonate, sulfonate, phosphonate and isethionate.
- the compounds of this invention may have a substituent which is an acid group (for example, -C02H, -S03H, -S02H, -P03H2, -P02H) .
- Compounds of this invention having a substituent which is an ester of such an acidic group are also encompassed by this invention.
- Such esters may serve as prodrugs.
- the prodrugs of this invention are metabolized in vivo to provide the above-mentioned acidic substituent of the parental compound.
- Prodrugs may also serve to increase the solubility of these substances and/or absorption from the gastrointestinal tract. These prodrugs may also serve to increase solubility for intravenous administration of the compounds.
- Prodrugs may also serve to increase the hydrophobicity of the compounds .
- Prodrugs may also serve to increase the oral bioavailability of the compounds by increasing absorption and/or decreasing first- pass metabolism.
- Prodrugs may also serve to increase tissue penetration of the compounds, thereby leading to increased
- esters contemplated by this invention include:
- alkyl esters especially loweralkyl esters, including, but not limited to, ethyl, n-propyl, isopropyl, n-butyl, sec-butyl, isobutyl, t-butyl, n-pentyl esters and the like;
- alkoxyalkyl esters especially, loweralkoxyloweralkyl esters, including, but not limited to, methoxymethyl, 1- ethoxyethyl, 2-methoxyethyl, isopropoxymethyl, t- butoxymethyl esters and the like; alkoxyalkoxyalkyl esters, especially, alkoxyalkoxy- substituted loweralkyl esters, including, but not limited to, 2-methoxyethoxymethyl esters and the like;
- aryloxyalkyl esters especially, aryloxy-substituted loweralkyl esters, including, but not limited to, phenoxymethyl esters and the like, wherein the aryl group is unsubstituted or substituted as previously defined herein;
- haloalkoxyalkyl esters especially, haloalkoxy- substituted loweralkyl esters, including, but not limited to, 2 , 2 , 2-trichloroethoxymethyl esters and the like;
- alkoxycarbonylalkyl esters especially, loweralkoxycarbonyl-substituted loweralkyl esters, including, but not limited to, methoxycarbonylmethyl esters and the like;
- cyanoalkyl esters especially, cyano-substituted loweralkyl esters, including, but not limited to, cyanomethyl, 2-cyanoethyl esters and the like;
- thioalkoxymethyl esters especially, lowerthioalkoxy- substituted methyl esters, including, but not limited to, methylthiomethyl, ethylthiomethyl esters and the like; alkylsulfonylalkyl esters, especially, loweralkylsulfonyl-substituted loweralkyl esters, including, but not limited to, 2-methanesulfonylethyl esters and the like;
- arylsulfonylalkyl esters especially, arylsulfonyl- substituted loweralkyl esters, including, but not limited to, 2-benzenesulfonylethyl and 2-toluenesulfonylethyl esters and the like;
- acyloxyalkyl esters especially, loweralkylacyloxy- substituted loweralkyl esters, including, but not limited to, formyloxymethyl, acetoxymethyl, pivaloyloxymethyl , acetoxyethyl, pivaloyloxyethyl esters and the like;
- cycloalkylcarbonyloxyalkyl esters including cyclopentanecarbonyloxymethyl , cyclohexanecarbonyloxymethyl, cyclopentanecarbonyloxyethyl, cyclohexanecarbonyloxyethyl esters and the like;
- arylcarbonyloxyalkyl esters including, but not limited to, benzoyloxymethyl esters and the like;
- alkoxycarbonyloxy alkyl esters, especially, (loweralkoxycarbonyloxy) -substituted loweralkyl esters, including, but not limited to, methoxycarbonyloxymethyl. ethoxycarbonyloxymethyl . 1- (methoxycarbonyloxy) ethyl, 2- (ethoxycarbonyloxy) ethyl esters and the like;
- (cycloalkyloxycarbonyloxy) alkyl esters especially, (cycloalkyloxycarbonyloxy) -substituted loweralkyl esters, including, but not limited to, cyclohexyloxycarbonyloxymethyl , cyclopentyloxycarbonyloxyethyl , cyclohexyloxycarbonyloxypropyl esters and the like;
- oxodioxolenylmethyl esters including, but not limited to, (5-phenyl-2-oxo-l, 3-dioxolen-4-yl) methyl, [5- (4- methylphenyl) -2-oxo-l, 3-dioxolen-4-yl] methyl, [5- (4- methoxyphenyl) -2-oxo-l , 3-dioxolen-4-yl] methyl, [5- (4- fluorophenyl) -2-oxo-l, 3-dioxolen-4-yl] methyl, [5- (4- chlorophenyl) -2-oxo-l, 3 -dioxolen-4-yl] methyl, (2-oxo-l, 3- dioxolen-4-yl) methyl, (5-methyl-2-oxo-l , 3-dioxolen-4- yl) methyl, (5
- phthalidyl esters wherein the phenyl ring of the phthalidyl group is unsubstituted or substituted as defined previously herein, including, but not limited to, phthalidyl, dimethylphthalidyl, dimethoxyphthalidyl esters and the like;
- aryl esters including, but not limited to, phenyl, naphthyl, indanyl esters and the like;
- arylalkyl esters especially, aryl-substitued loweralkyl esters, including, but not limited to, benzyl, phenethyl, 3-phenylpropyl, naphthylmethyl esters and the like, wherein the aryl part of the arylalkyl group is unsubstituted or substituted as previously defined herein;
- dialkylaminoalkyl esters especially dialkylamino- substituted loweralkyl esters, including, but not limited to, 2- (N,N-dimethylamino) ethyl, 2- (N,N-diethylamino) ethyl ester and the like
- heterocyclic alkyl esters especially, heterocyclic- substituted loweralkyl esters wherein the heterocycle is a nitrogen-containing heterocycle, including, but not limited to, (heterocyclic) methyl esters and the like, wherein the heterocyclic part of the (heterocyclic) alkyl group is unsubstituted or substituted as previously defined herein; and carboxyalkyl esters, especially, carboxy-substituted loweralkyl esters, including, but not limited to carboxymethyl esters and the like;
- Preferred prodrug esters of acid-containing compounds of the instant invention are loweralkyl esters, including, but not limited to, ethyl, n-propyl, isopropyl, n-butyl, sec-butyl, isobutyl, t-butyl, n-pentyl esters, 3- pentyl esters, cycloalkyl esters, cycloalkylalkyl esters and benzyl esters wherein the phenyl ring is unsubstituted or substituted as previously defined herein.
- halide for example, chloride or acyl chloride
- a base for example, triethylamine, DBU, N,N-dimethylaminopyridine and the like
- an inert solvent for example, DMF, acetonitrile, N-methylpyrrolidone and the like
- an activated derivative of the acid for example, an acid chloride, sulfonyl chloride, monochlorophosphonate and the like
- an activated derivative of the acid for example, an acid chloride, sulfonyl chloride, monochlorophosphonate and the like
- prodrugs of the present invention include amides derived from the substituent which is an acid group.
- Such amides contemplated by this invention include:
- alkylamino amides especially, loweralkylamino amides, including, but not limited to, methylamino, ethylamino, n-propylamino, isopropylamino amides and the like ;
- cylcoalkylamino amides including, but not limited to, cylopropylamino, cylcobutylamino, cyclopentylamino, cyclohexylamino amides and the like;
- acylamino amides including, but not limited to acetylamino, propionylamino, butanoylamino amides and the like;
- cylcoalkylcarbonylamino amides including, but not limited to, cyclopropylcarbonylamino, cyclobutylcarbonylamino amides and the like; alkoxycarbonylalkylamino amides, including, but not limited to, ethoxycarbonylmethylamino, t- butyloxycarbonylmethylamino and the like;
- aminoacylamino amides including, but not limited to, aminoacetylamino amides and the like;
- dialkylaminoacylamino amides including, but not limited to, dimethylaminoacetylamino, diethylaminoacetylamino amides and the like;
- (heterocyclic) acylamino amides including, but not limited to, piperidin-1-ylacetylamino amides and the like;
- amides derived from single naturally occuring L-amino acids or from acid-protected L-amino acids, for example, esters of such amino acids and the like) or from dipeptides comprising two naturally occuring L-amino acids wherein each of the two amino acids is the same or is different (or from acid-protected dipeptides, for example, esters of such dipeptides and the like) ;
- Methods for preparation of prodrug amides of compounds of the invention include reacting the acid with the appropriate amine in the presence of an amide bond or peptide bond-forming coupling reagent or reacting an activated derivative of the acid with the appropriate amine and the like.
- prodrugs of the present invention include esters of hydroxyl-substituted compounds of the invention which have been acylated with a blocked or unblocked amino acid residue, a phosphate function, a hemisuccinate residue, an acyl residue of the formula R100C(O)- or R100C(S)- wherein R100 is hydrogen, lower alkyl, haloalkyl, alkoxy, thioalkoxy, alkoxyalkyl, thioalkoxyalkyl or haloalkoxy, or an acyl residue of the formula Ra-C(Rb) (Rd)-C(O)- or Ra-C(Rb) (Rd)-C(S)- wherein Rb and Rd are independently selected from hydrogen or lower alkyl and Ra is -N(Re) (Rf) , -ORe or -SRe wherein Re and Rf are independently selected from hydrogen, lower alkyl and haloalkyl, or an amino-acyl residue
- amino acid esters of particular interest are of glycine and lysine; however, other amino acid residues can also be used, including any of the naturally occuring amino acids and also including those wherein the amino acyl group is -C(O) CH2NR102R103 wherein R102 and R103 are independently selected from hydrogen and lower alkyl, or the group -NR102 R103, where R102 and R103, taken together, forms a nitrogen containing heterocyclic ring.
- prodrugs include a hydroxyl-substituted compound of the invention whgrein the hydroxyl group is functionalized with a substituent of the formula
- R105 is lower alkyl, haloalkyl, alkoxy, thioalkoxy or haloalkoxy and R104 is hydrogen, lower alkyl, haloalkyl, alkoxycarbonyl, aminocarbonyl , alkylaminocarbonyl or dialkylaminocarbonyl .
- Such prodrugs can be prepared according to the procedure of Schreiber (Tetrahedron Lett. 1983, 24, 2363) by ozonolysis of the corresponding methallyl ether in methanol followed by treatment with acetic anhydride.
- esters of hydroxyl-substituted compounds of the invention is carried out by reacting a hydroxyl-substituted compound of the instant invention with an activated amino acyl, phosphoryl, hemisuccinyl or acyl derivative.
- Prodrugs of hydroxyl-substituted-compounds of the invention can also be prepared by alkylation of the hydroxyl substituted compound of the invention with (halo) alkyl esters, transacetalization with bis- (alkanoyl) acetals or condensation of the hydroxyl group with an activated aldehyde followed by acylation of the intermediate hemiacetal .
- This invention also encompasses compounds which are esters or prodrugs and which are also salts.
- a compound of the invention can be an ester of a carboxylic acid and also an acid addition salt of an amine or nitrogen-containing substituent in the same compound.
- Preferred compounds of the instant invention have the following characteristics:
- the compound will possess a carboxylate, sulfonate, sulfinate, phosphate, or phosphinate substituent within Site of Occupation 1.
- the compound will possess a substituent with at least two sp2 carbon centers within Site of Occupation
- the compound will possess an amide or sulfonamide group within Site of Occupation 3
- the compound will possess a 4, 5, 6, 7, or 8- membered non-aromatic ring system, whose centroid lies within Site of Occupation 4.
- the volume of each of the Sites of Occupation have radius 4.0 Angstroms
- the compound will possess a carboxylate substituent within Site of Occupation 1.
- the compound will possess a substituent with at least two sp2 carbon centers within Site of Occupation
- the compound will possess an amide group within Site of Occupation 3
- the compound will possess a 5- or 6-membered ring system, whose centroid lies within Site of Occupation 4.
- the volume of each of the Sites of Occupation have radius 4.0 Angstroms .
- Table 2 provided hereinbelow illustrates substituents containing at least two sp2 carbon centers that bind within the Site of Occupation 2.
- the point of attachment of the substituent to the remainder of the inhibitor molecule is designated by wavy underline. All other points of attachment on these substituents are included within the scope of the invention.
- Influenza virus A/Nl/PR/8/34 was grown in the allantoic cavity of fertilized eggs and purified by sucrose density gradient centrifugation (Laver, W. G. (1969) in "Fundamental Techniques in Virology” (K. Habel and N. P. Salzman, eds . ) pp. 92-86, Academic Press, New York). Influenza virus A/N2/Tokyo/3/67 was obtained from the tissue culture supernatents of virus grown on MDCK cells.
- Neuraminidase from B/Memphis/3/89 virus was prepared by digestion of the virus with TPCK-trypsin followed by centrifugation and then purification of the neuraminidase catalytic fragment using sucrose density gradient centrifugation and dialysis as described previously (Air, G. M., Laver, W. G. , Luo, M. , Stray, S. J. , Legrone, G., and Webster, R. G. (1990) Virology 177, 578-587).
- the neuraminidase inhibition assays used the neuraminidase enzymatic activity associated with the A/Nl/PR/8/34 or A/N2/Tokyo/3/67 whole virus, or the B/Memphis/3/89 catalytic head fragment.
- the whole virus or catalytic fragment was diluted appropriately with 20 mM N- ethylmorpholine, 10 mM calcium choride, pH 7.5 buffer on the day of the experiment.
- Neuraminidase inhibition assays were conducted in 20 mM N-ethylmorpholine, 10 mM calcium choride, pH 7.5 buffer with 5% DMSO. Reaction mixtures included neuraminidase, inhibitor (test compound) and 20-30
- ⁇ M 4-methylumbelliferyl sialic acid substrate in a total volume of 200 ⁇ h and were contained in white 96-well U- shaped plates. Typically, five to eight concentrations of inhibitor were used for each Ki value measurement .
- the reactions were initiated by the addition of enzyme and allowed to proceed for 30-60 minutes at room temperature.
- the fluorescence for each well of the plate was measured once each minute during the reaction period by a Fluoroskan II plate reader (ICN Biomedical) equipped with excitation and emission filters of 355 +/- 35 nm and 460 +/- 25 nm, respectively.
- the plate reader was under the control of DeltaSoft II software (Biometallics) and a Macintosh computer.
- Km 16 - 40 ⁇ M depending on the neuraminidase strain tested.
- neuraminidase and inhibitor were preincubated in the absence of substrate for 2 hours at room temperature prior to initiating the reactions with substrate. Data analysis for the resulting linear velocities was conducted as described above.
- Equation 2 was used to measure Ki values in the sub- nanomolar range (Morrison, J. F. And Stone, S. R. (1985) Comments Mol . Cell Biophys . 2, 347-368) .
- V A ⁇ sqrt ⁇ (Ki' + It -Et) ⁇ 2 + 4Ki'Et ⁇ - (Ki' + It - Et)] eqn. 2
- V velocity
- A ⁇ kcat [S] /2 (Km + [S] )
- a is a factor to convert fluorescence units to molar concentrations
- Ki' Ki (1 + [S] /Km)
- It total inhibitor concentration
- Et total active concentration of neuraminidase.
- the compounds of the invention inhibit influenza A neuraminidase and influenza B neuraminidase with Ki values between about 0.1 nanomolar and about 500 micromolar.
- Preferred compounds of the invention invention inhibit influenza A neuraminidase and influenza B neuraminidase with Ki values between about 0.1 nanomolar and about 3.5 micromolar.
- the ability of the compounds of the invention to inhibit plaque formation in cell culture can be determined by the method described below.
- MDCK cells obtained from the American Type Culture Collection were grown in Dulbecco's Modified Eagle Medium (DMEM) high glucose (GibcoBRL) supplemented with 10% fetal calf serum (JRH Biosciences) , 40 mM HEPES buffer (GibcoBRL) and antibiotics (GibcoBRL) . Cells were routinely cultured in flasks or roller bottles at 37°C and 5% C02.
- DMEM Dulbecco's Modified Eagle Medium
- GabcoBRL high glucose
- JRH Biosciences 40 mM HEPES buffer
- antibiotics GabcoBRL
- Plaque Assay Protocol On MDCK cell confluent 6 well plates growth media was removed and the cells were overlaid with 1.5 ml of assay media (DMEM with 1% fetal calf serum, 40 mM HEPES buffer and antibiotics) containing pre-mixed virus (influenza A/Tokyo/3/67 [H2N2] ) (40 -100 plaque forming units) and 2x concentration test compound. The plates were placed on a rocker and incubated for 2 hours at room temperature. During the virus adsorption period agar overlay media was prepared.
- assay media DMEM with 1% fetal calf serum, 40 mM HEPES buffer and antibiotics
- pre-mixed virus influenza A/Tokyo/3/67 [H2N2]
- Plaques were fixed with 3.7% formalin in PBS for 20 minutes followed by removal of the agar overlay and staining with 0.1% crystal violet in distilled water for 15 minutes. Plaques were counted and EC 50 concentration determined from multiple concentrations of the tested compound using regression analysis.
- Viral Stocks Stocks were prepared in MDCK confluent roller bottles incubated at 37 °C in DMEM supplemented with 1% FCS, 40mM HEPES buffer, and antibiotics. Bottles were inoculated with a multiplicity of infection of approximately 0.1 plaque forming unit for each cell. Roller bottles were harvested after the cytopathic effect of the virus was observed to be complete. Stocks were prepared from the supernatant resulting from the low speed centrifugation of the media and cell lysate . Stocks were titered and stored at -80 °C.
- Compounds of the invention provided plaque formation inhibition for influenza virus A/N2/Tokyo in MDCK cells with EC50 values between about 100 micromolar and about 1 nanomolar.
- Preferred compounds of the invention provided plaque formation inhibition for influenza virus A/N2/Tokyo in MDCK cells with EC50 values between about 1 micromolar and about 1 nanomolar.
- the compounds of the invention can be tested for in vivo antiviral activity using the method described below. In Vivo Antiviral Efficacy Method
- mice Female BALB/c mice were placed under anesthesia (sevoflurane) and inoculated intranasally (IN) with 0.1 ml of influenza A VR-95 (Puerto Rico PR8-34) at 10-2 (diluted from frozen stock) . This viral concentration consistently produced disease in mice within 5 days of inoculation. Animals were treated 4h. pre-infection and 4h. post- infection, andperiodically thereafter, with one of the following therapies: no treatment; test compound (100, 25, 6.25, 1.39 mg/kg/day BID, PO) ; or vehicle (sterile water BID, PO) . A group of ten animals (designated as control) was inoculated with 0.9% saline. Percent survival was determined.
- lungs were harvested, weighed and assigned scores of 0, 1, 2, 3 or 4 based on percentage consolidation (0; 10-20; 25-50; 50-75; 75-100%, respectively) .
- each lung pair was image analyzed to determine objective lung consolidation percentages .
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Priority Applications (1)
Application Number | Priority Date | Filing Date | Title |
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AU20393/01A AU2039301A (en) | 1999-10-19 | 2000-10-02 | Neuraminidase inhibitors |
Applications Claiming Priority (2)
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US41975999A | 1999-10-19 | 1999-10-19 | |
US09/419,759 | 1999-10-19 |
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WO2001029020A2 true WO2001029020A2 (en) | 2001-04-26 |
WO2001029020A3 WO2001029020A3 (en) | 2001-12-27 |
WO2001029020A9 WO2001029020A9 (en) | 2002-10-03 |
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PCT/US2000/027090 WO2001029020A2 (en) | 1999-10-19 | 2000-10-02 | Neuraminidase inhibitors |
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WO (1) | WO2001029020A2 (en) |
Cited By (1)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
EP2075256A2 (en) | 2002-01-14 | 2009-07-01 | William Herman | Multispecific binding molecules |
Citations (5)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US5648379A (en) * | 1990-04-24 | 1997-07-15 | Biota Scientific Management Pty., Ltd. | Derivatives and analogues of 2-deoxy-2,3-didehydro-n-acetyl neuraminic acid and their use as antiviral agents |
WO1998007685A1 (en) * | 1996-08-23 | 1998-02-26 | Gilead Sciences, Inc. | Preparation of cyclohexene carboxylate derivatives |
WO1998017647A1 (en) * | 1996-10-21 | 1998-04-30 | Gilead Sciences, Inc. | Piperidine compounds |
WO1999006369A1 (en) * | 1997-08-01 | 1999-02-11 | University Of Florida | Neuraminidase inhibitors |
WO1999055664A1 (en) * | 1998-04-24 | 1999-11-04 | Gilead Sciences, Inc. | Preparation of carbocyclic compounds |
-
2000
- 2000-10-02 WO PCT/US2000/027090 patent/WO2001029020A2/en active Application Filing
- 2000-10-02 AU AU20393/01A patent/AU2039301A/en not_active Abandoned
Patent Citations (5)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US5648379A (en) * | 1990-04-24 | 1997-07-15 | Biota Scientific Management Pty., Ltd. | Derivatives and analogues of 2-deoxy-2,3-didehydro-n-acetyl neuraminic acid and their use as antiviral agents |
WO1998007685A1 (en) * | 1996-08-23 | 1998-02-26 | Gilead Sciences, Inc. | Preparation of cyclohexene carboxylate derivatives |
WO1998017647A1 (en) * | 1996-10-21 | 1998-04-30 | Gilead Sciences, Inc. | Piperidine compounds |
WO1999006369A1 (en) * | 1997-08-01 | 1999-02-11 | University Of Florida | Neuraminidase inhibitors |
WO1999055664A1 (en) * | 1998-04-24 | 1999-11-04 | Gilead Sciences, Inc. | Preparation of carbocyclic compounds |
Non-Patent Citations (1)
Title |
---|
G. B. KOK ET. AL.: "A Palladium (II) Mediated Approach to Some Novel C-4 Substituted Neu5Ac2en Derivatives." JOURNAL OF THE CHEMICAL SOCIETY, PERKIN TRANS. I,, no. 5, 1998, pages 905-8, XP000984708 cited in the application * |
Cited By (1)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
EP2075256A2 (en) | 2002-01-14 | 2009-07-01 | William Herman | Multispecific binding molecules |
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AU2039301A (en) | 2001-04-30 |
WO2001029020A9 (en) | 2002-10-03 |
WO2001029020A3 (en) | 2001-12-27 |
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