WO2001015722A2 - Methods useful in affecting apoptosis - Google Patents
Methods useful in affecting apoptosis Download PDFInfo
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- WO2001015722A2 WO2001015722A2 PCT/US2000/040738 US0040738W WO0115722A2 WO 2001015722 A2 WO2001015722 A2 WO 2001015722A2 US 0040738 W US0040738 W US 0040738W WO 0115722 A2 WO0115722 A2 WO 0115722A2
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- WIPO (PCT)
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- acid glycoprotein
- geranylgeraniol
- agp
- cell
- apoptosis
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
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- A61K38/00—Medicinal preparations containing peptides
- A61K38/16—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
- A61K38/17—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
- A61K38/1703—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates
- A61K38/1709—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates from mammals
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P35/00—Antineoplastic agents
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
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- C12N5/00—Undifferentiated human, animal or plant cells, e.g. cell lines; Tissues; Cultivation or maintenance thereof; Culture media therefor
- C12N5/0018—Culture media for cell or tissue culture
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N2501/00—Active agents used in cell culture processes, e.g. differentation
- C12N2501/998—Proteins not provided for elsewhere
Definitions
- the present invention relates to the field of molecular biology, in particular to apoptosis.
- compositions and methods useful to alter apoptosis which compositions and methods enable modification of pathological conditions, such as cancer.
- Apoptosis a signal-dependent mode of programmed cell death in multicellular organisms, is crucial for (i) the remodeling of tissues in embryonic development, (ii) clonal selection of specifically reactive populations of lymphocytes, (iii) elimination of damaged cells during hematopoiesis, and (iv) normal tissue turnover. Absence of apoptotic death is often associated with the transformation from a normal to a malignant phenotype.
- Apoptosis is characterized by morphological and biochemical changes in the cell: shrinkage of cell volume, condensation of chromatin, fragmentation of DNA, and a relatively high degree of preservation of plasma membrane and cytoplasmic organelles.
- Cells undergoing apoptosis are fragmented into apoptotic bodies, which are then phagocytosed and degraded by neighboring cells and macrophages.
- the roles of specific genes and changes in intracellular signals have provided considerable insight on the mechanisms of apoptosis (1- 4).
- caspase-1 ICE/Ced-3
- CPP32 caspase-3
- apoptotic signals are complex and dependent on cell-types and growth states.
- extracellular macromolecular factors or physical stressors e.g., tumor necrosis factor ⁇ (TNF- ⁇ ), Fas ligand, UV and ⁇ -irradiation
- TNF- ⁇ tumor necrosis factor ⁇
- Fas ligand Fas ligand
- UV and ⁇ -irradiation a number of lipids have been identified as potent inducers of apoptosis.
- Ceramide and sphingosine (6,7) mediate apoptosis initiated by TNF- ⁇ , Fas ligand, and X-ray irradiation (8).
- retinoids (9,10), farnesol
- Isoprenoids are essential compounds for cell proliferation and differentiation. Post- translational prenylation of nuclear lamins, G-proteins and small GTP-binding proteins is mediated by farnesyl protein transferase and geranylgeranyl protein transferase. Interestingly, the inhibition of isoprenoid synthesis (24-26) blocks cell growth and induces apoptosis.
- GGA can be produced from GGOH in rat liver, and is envisaged to be derived from pyrophosphatase-mediated hydrolysis of geranylgeranyl pyrophosphate or by degradation of isoprenylated proteins (27).
- the present invention provides methods to inhibit isoprenoid-induced apoptosis of at least one cell, comprising introducing at least one ⁇ l-acid glycoprotein to an isoprenoid-containing cellular milieu.
- said cell is a human cell.
- said ⁇ l- acid glycoprotein is a human ⁇ l-acid glycoprotein.
- Preferred are those methods, wherein said ⁇ l-acid glycoprotein is a 50 kDa serum protein capable of binding geranylgeraniol.
- isoprenoid comprises at least three isoprene units are preferred, with those wherein said isoprenoid comprises four isoprene units being more preferred.
- said ⁇ l-acid glycoprotein is a human ⁇ l-acid glycoprotein.
- methods to inhibit geranylgeraniol-induced hypodiploid cell proliferation comprising introducing at least one ⁇ l-acid glycoprotein to a geranylgeraniol-containing cellular milieu.
- there are provided methods wherein said ⁇ l-acid glycoprotein is a human ⁇ l-acid glycoprotein.
- ⁇ l-acid glycoprotein is a human ⁇ l-acid glycoprotein.
- Isoprenoid is meant to refer to any naturally-occurring isoprenoid, or a functional analogue thereof, including synthetic compounds described in the present disclosure.
- FIG. 1 Photoaffinity labeling of FBS (top panels) and human serum (bottom panels) by [ 3 H]EBDA. Lanes 1-8 (left, Coomassie-blue stained) and l'-8' (fluorogram) of FBS (top panels) and human serum (bottom panels) by [ 3 H]EBDA. Lanes 1-8 (left, Coomassie-blue stained) and l'-8' (fluorogram) of FBS (top panels) and human serum (bottom panels) by [ 3 H]EBDA. Lanes 1-8 (left, Coomassie-blue stained) and l'-8' (fluorogram) of
- Panel A IEF purified p50 was labeled by [ H]EBDA with GGOH as a competitor at 0, 10, 30, 50, 100, 200, 300, 500 and 1000-fold molar excess.
- Panel B IEF purified p50 was labeled by
- FIG 4 Photoaffinity labeling of p50 by photolabile benzophenone analogs of GGOH. IEF purified p50 was labeled by [ 3 H]EBDA (overexposed), lm, lp, 2m, and 2p respectively. Left: Coomassie-blue stained gel; right: fluorogram.
- Figure 5 conserveed sequences of p50 identify it as bovine AGP. Amino acid sequences of the six Edman-degradation sequenced p50 fragments were aligned with AGPs from three other species. conserveed amino acids are highlighted in red.
- FIG. 6 AGP inhibits GGOH-induced activation of caspase 3.
- HL-60 cells were incubated for 1 h in the presence of increasing amounts of GGOH (30, 40, 50, 60, and 70 ⁇ M) in either the absence (open circles O) or presence ( closed circles it) of 40 ⁇ M AGP.
- Caspase activity was measured by the generation of fluorescent cleavage products. All values were normalized to protein concentration in samples, and represent averages of three independent measurements; error bars show standard deviation, while absence of error bars indicates that the standard deviation is less than 5 units.
- Figure 7 AGP protects cells from GGOH-induced apoptosis.
- HL-60 cells were incubated for 3 h in the presence of increasing amounts of GGOH (50, 60, and 70 ⁇ M) in either the absence (A) or presence (B) of 30 ⁇ M AGP.
- the induction of apoptosis was measured at the creation of a hypodiploid population of cells.
- the DNA content of the cells was determined by propidium iodide staining and by FACS analysis.
- the percentage values in each of the histograms indicate the fraction of the cells that contain a Sub-Gl DNA content. The estimate was generated using ModFit Software, version 2.0.
- FIG. 8 Model for the role of AGP in modulating apoptosis.
- GGOH is released from dying cells when GGPP, a key precursor in sterol biogenesis and in geranylgeranylation of signaling proteins, is hydrolyzed.
- AGP may bind and sequester GGOH, thereby protecting neighboring cells from this apoptotic signal originating from cells undergoing programmed or necrotic cell death.
- the present invention provides methods to inhibit isoprenoid-induced apoptosis of at least one cell, comprising introducing at least one ⁇ l-acid glycoprotein to an isoprenoid-containing cellular milieu.
- said cell is a human cell.
- said ⁇ l- acid glycoprotein is a human ⁇ l-acid glycoprotein.
- Preferred are those methods, wherein said ⁇ l-acid glycoprotein is a 50 kDa serum protein capable of binding geranylgeraniol.
- isoprenoid comprises at least three isoprene units are preferred, with those wherein said isoprenoid comprises four isoprene units being more preferred.
- said ⁇ l-acid glycoprotein is a human ⁇ l-acid glycoprotein.
- methods to inhibit geranylgeraniol-induced hypodiploid cell proliferation comprising introducing at least one ⁇ l-acid glycoprotein to a geranylgeraniol-containing cellular milieu.
- there are provided methods wherein said ⁇ l-acid glycoprotein is a human ⁇ l-acid glycoprotein.
- said ⁇ l-acid glycoprotein is a human ⁇ l-acid glycoprotein.
- AGP isoprenoid binding protein
- AGP is a serum protein, which is synthesized mainly by the liver and is also found in lymphocytes. The level of AGP rises dramatically with inflammation, trauma, and HIV infection. In addition, as an acute-phase protein, AGP reaches peak serum levels in mice 12-48 h after turpentine or IL-1 injection, and can confer resistance to Gram negative infections such as Klebsiella pneumoniae (41). AGP binds a variety of administered drugs and is a target protein in pharmacokinetic studies of drug clearance (42). Although AGP has been reported to be involved in immune responses, the exact biological function of AGP is unknown.
- AGP has high affinity, selective binding to isoprenoids, with GGOH as the most likely candidate for the principal endogenous ligand.
- AGP will bind isoprenoids with three isoprene units (sesquiterpenes), but it preferentially binds the diterpenes, which have four isoprene units.
- This interaction is highly AGP-specific.
- [3H]EBDA we found that the active form of AGP seemed quite labile. Repeated freezing and thawing reduced the selectivity between AGP and BSA labeling by [3HJEBDA .
- AGP was structurally similar to serum retinol binding protein and its relatives (43).
- the strong binding of isoprenoids by AGP is consistent with its well-characterized ability to bind lipophilic drugs (44,45) and may be a reflection of its true biological role.
- AGP and ⁇ l-antitrypsin are reported to protect mice from tumor necrosis factor (TNF)-induced death (46-48).
- TNF tumor necrosis factor
- antitrypsin is conveyed by specifically inhibiting the TNF-induced apoptosis of hepatocytes in vivo (49). The inhibition is thought to be indirect because AGP and antitrypsin did not protect hepatoma cell-lines from apoptosis in vitro.
- the inventor's findings further support the proposition that AGP functions to protect cells from apoptosis.
- GGOH and GGA are known apoptosis inducers.
- Our data demonstrate that AGP binds these apoptosis mediators, and that binding appears to inhibit the induction of apoptosis (Figure 6 and 7).
- the location of AGP in serum would seem to limit its potential interaction with intracellular isoprenols ligands.
- intracellular isoprenols in vivo.
- intracellular FOH levels increase and FOH is secreted (50-52).
- There is currently no evidence for the existence of extracellular GGOH and GGA but it is plausible for one to speculate that an analogous mechanism exists.
- the intracellular isoprenols may also be released when a cell becomes fragmented during necrosis or as proteins and or co-factors are degraded during apoptosis.
- the free isoprenols could induce unregulated apoptosis in neighboring cells.
- AGP may function to protect the neighboring cells from excess GGOH secreted by pre-apoptotic cells, or by escaping from dying cells.
- FIG. 8 A working model to explain the function of AGP as an important regulator of apoptosis is shown in Figure 8. Initially, extracellular signals induce apoptosis or injury produces cellular necrosis. Intracellular isoprenols produced from hydrolysis of FPP or
- GGPP escape to the surrounding cells.
- the isoprenols In the absence of a protective sesquestrant, the isoprenols have the potential to initiate a localized apoptotic cascade.
- apoptosis is contained by binding these apoptotic extracellular lipid signals and preventing the unregulated spread of apoptotic signals.
- the radioactive JH I analog f H]EBDA was synthesized (28,29) by Dr. I. Ujvary (The University at Stony Brook, Stony Brook, NY) and the GGOH analogs were prepared as described (30,31). Sera were purchased from Life Technologies (Gaithersburg, MD). N-terminal sequencing was performed by Dr. R. Schackmann (The University of Utah, Salt
- Fetal bovine serum (FBS, 450 ml) was freed of paniculate matter using a disposable filter (Corning, 115 ml, 0.45 ⁇ m) and dialyzed overnight (Spectra por, 3000 MWCO) against buffer A (20 mM phosphate buffer, pH 7.1).
- buffer A (20 mM phosphate buffer, pH 7.1).
- BSA bovine serum albumin
- the fractions that contained p50 were pooled, lyophilized, and resuspended in 300 ⁇ l of gel filtration buffer (50 mM phosphate buffer, 150 mM sodium chloride, pH 7.0). It was then purified on a gel filtration column (Tosohaas TSK 3000 SW) and the fractions were monitored by UV and liquid scintillation counting (LSC).
- gel filtration buffer 50 mM phosphate buffer, 150 mM sodium chloride, pH 7.0
- the wet PVDF membrane was rinsed several times with TBST (20 mM Tris-HCl, pH 7.5, 150 mM NaCl, 0.05% Tween 20) and blocked with 5% nonfat milk in TBST for 1.5 h. The membrane was then incubated with an anti-AGP polyclonal antibody (1: 1000 dilution in TBST) for 1 h. The PVDF membrane was washed with TBST three times (10 min each). Alkaline phosphatase (AP) coupled with anti rabbit-IgG was then incubated with the membrane for 1 h and washed with TBS three times (10 min each). The membrane was finally developed using an AP conjugate substrate kit and protocol (Bio- Rad).
- TBST 20 mM Tris-HCl, pH 7.5, 150 mM NaCl, 0.05% Tween 20
- the bands of p50 were cut from the PVDF membrane and minced into small pieces.
- 50 ⁇ l of digestion buffer 1% reduced Triton X-100, 10% acetonitrile, 100 mM Tris-HCl, pH 8.0
- the mixture was vortexed for 10-20 sec and incubated for 30 min at it.
- Proteolytic enzyme Lys C (enzyme/substrate, 1:10) was added and the reaction was incubated for 24 h at 37 oC.
- the mixture was then vortexed for 5-10 sec, sonicated for 5 min and centrifuged (Fisher Scientific) for 2 min at 4,000 rpm. The supernatant was stored.
- the cell-line, HL-60 was maintained in suspension culture in RPMI 1640 (GibcoBRL Rockville, MD) supplemented with 10% FBS (Hyclone, Logan, UT), 100 units penicillin (Sigma), 100 ⁇ g/ml streptomycin (Sigma), 200 ⁇ M glutamate (GibcoBRL), and 5% CO2.
- HL-60 cells were obtained in cells collected by centrifugation (100 x g) for 5 min at it. Media was aspirated and cells were resuspended in RPMI 1640 (GibcoBRL), supplemented with 1% BSA (Sigma, cat #A2153), 100 units penicillin (Sigma), 100 ⁇ g/ml streptomycin (Sigma), and 200 ⁇ M glutamate (GibcoBRL) with or without 1.5mg/ml AGP (Sigma, cat. #G9885) at 37 °C.
- Cells were collected in 1.5 ml microcentrifuge tubes by centrifugation (100 x g) for 5 min at it, and the media was aspirated. Cells were fixed and permeabilized overnight in 1 ml of MeOH at -20°C . Fixed cells were centrifuged (100 x g) for 5 min at it and the MeOH was removed by aspiration. Cells were resuspended in PBS with 5 ⁇ g/ml propidium iodide and the DNA content of cells was determined by fluorescence-activated cell sorting using a Beckton Dickson FACS Scan instrument operated with CellQuest Software. The fraction of the cell population that was hypodiploid and apoptotic was estimated using ModFitLT V2.0 (Win32).
- Caspase 3 Activity Assay Cell samples were prepared as described above for the DNA fragmention assays. The exceptions were that AGP was added to the resuspending media at 2.0 mg/ml, and the cells were incubated in the 24-well plate for 1 h at 37 °C, 5% CO2. After the incubation cells were collected in 1.5 ml microcentrifuge tubes by centrifugation (100 x g) for 5 min at it and the media was aspirated. The cell pellet was washed once with 1 ml PBS at 4 °C. The PBS was aspirated and cells were resuspended in cold Caspase Activity Buffer (CAB), 25mM HEPES, 5 mM EDTA, 0.1% CHAPS, pH 7.5,
- CAB Cold Caspase Activity Buffer
- Spectrofluorimeter with excitation at 360 ⁇ 40 nm and emission detection at 515 ⁇ 40 nm. Samples were measured in triplicate and normalized by protein concentration. Protein concentrations were determined using a BCA protein assay (Pierce, Rockford, IL) following precipitation in 10% trichloroacetic acid.
- bovine p50 To identify bovine p50, a large scale protein purification and photoaffinity labeling was performed. FBS (450 ml) was dialyzed and filtered to remove particulate matter, and then purified by Affi-Gel blue gel chromatography by elution with 1.5 M NaSCN, 20 mM phosphate. The flow-through and the eluted fractions were tested by photoaffinity labeling with [3H]EBDA. The flow-through contained all of the p50 (data not shown), and was concentrated by ultrafiltration and further purified by IEF. Each fraction from the IEF was analyzed for pH and subjected to further dialysis.
- the p50 fractions were photoaffinity labeled with [ 3 H]EBDA and further purified by RP-HPLC and gel filtration. Peak fractions from the gel filtration purification were identified by LSC and fluorography. RP-HPLC, but not gel filtration, provided a substantial increase in purity. In order to obtain protein sequence data, the peaks were separated by 8% SDS-PAGE and transferred to a PVDF membrane. Edman degradation failed to provide any sequence for the intact p50, suggesting a blocked N-terminus. In order to get internal sequence information, p50 was digested by Lys C directly on the PVDF membrane. The Lys C digests of p50 were applied to an RP C18 column and six single-peak fractions were sequenced.
- GGOH is capable of inducing apoptosis in a variety of cell-lines (12,14,21,37-39). We therefore tested whether the association of AGP with GGOH altered the apoptosis- inducing activity of GGOH. The two most common cellular characteristics associated with
- GGOH-induced apoptosis are DNA fragmentation and caspase 3 activation (12,14,21,37- 39).
- DNA fragmentation ( Figure 6) was consistent with induced apoptosis.
- the addition of GGOH to the cells created a large population of hypodiploid cells (39).
- the inclusion of AGP during incubation with GGOH substantially decreased the ability of GGOH to induce the hypodiploid cell population.
- the inclusion of AGP inhibited GGOH-induced caspase 3 activation ( Figure 7). While caspase 3 could be activated in the presence of AGP, activation required significantly higher doses of GGOH.
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Application Number | Priority Date | Filing Date | Title |
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AU80342/00A AU8034200A (en) | 1999-08-27 | 2000-08-25 | Methods useful in affecting apoptosis |
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US15103299P | 1999-08-27 | 1999-08-27 | |
US60/151,032 | 1999-08-27 |
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WO2001015722A2 true WO2001015722A2 (en) | 2001-03-08 |
WO2001015722A3 WO2001015722A3 (en) | 2001-12-13 |
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PCT/US2000/040738 WO2001015722A2 (en) | 1999-08-27 | 2000-08-25 | Methods useful in affecting apoptosis |
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WO (1) | WO2001015722A2 (en) |
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- 2000-08-25 WO PCT/US2000/040738 patent/WO2001015722A2/en active Application Filing
- 2000-08-25 AU AU80342/00A patent/AU8034200A/en not_active Abandoned
Non-Patent Citations (2)
Title |
---|
W. VAN MOLLE ET AL.: "Activation of caspases in lethal experimental hepatitis and prevention by acute phase proteins" J. IMMUNOL., vol. 163, 1999, pages 5235-5241, XP002164997 * |
W. VAN MOLLE ET AL.: "Alpha1-acid glycoprotein and alpha1-antitrypsin inhibit TNF-induced but not anti-Fas inducedapoptosis of hepatocytes in mice" J. IMMUNOL., vol. 159, 1997, pages 3555-3564, XP002164996 cited in the application * |
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