WO2000057309A3 - Database and interface for 3-dimensional molecular structure visualization and analysis - Google Patents

Database and interface for 3-dimensional molecular structure visualization and analysis Download PDF

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Publication number
WO2000057309A3
WO2000057309A3 PCT/US2000/007474 US0007474W WO0057309A3 WO 2000057309 A3 WO2000057309 A3 WO 2000057309A3 US 0007474 W US0007474 W US 0007474W WO 0057309 A3 WO0057309 A3 WO 0057309A3
Authority
WO
WIPO (PCT)
Prior art keywords
interface
molecular structure
database
files
program
Prior art date
Application number
PCT/US2000/007474
Other languages
French (fr)
Other versions
WO2000057309A2 (en
Inventor
Kalyanaraman Ramnarayan
Behnam Vessal
Jeyapandian Kottalam
Cindy L Fisher
Saied Moezzi
Muthuchidambaram Prabhakaran
Original Assignee
Structural Bioinformatics Inc
Kalyanaraman Ramnarayan
Behnam Vessal
Jeyapandian Kottalam
Cindy L Fisher
Saied Moezzi
Muthuchidambaram Prabhakaran
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Structural Bioinformatics Inc, Kalyanaraman Ramnarayan, Behnam Vessal, Jeyapandian Kottalam, Cindy L Fisher, Saied Moezzi, Muthuchidambaram Prabhakaran filed Critical Structural Bioinformatics Inc
Priority to EP00918205A priority Critical patent/EP1163610A2/en
Priority to JP2000607115A priority patent/JP2002540508A/en
Priority to AU39060/00A priority patent/AU3906000A/en
Publication of WO2000057309A2 publication Critical patent/WO2000057309A2/en
Publication of WO2000057309A3 publication Critical patent/WO2000057309A3/en

Links

Classifications

    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B15/00—ICT specially adapted for analysing two-dimensional or three-dimensional molecular structures, e.g. structural or functional relations or structure alignment
    • G16B15/20—Protein or domain folding
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B15/00—ICT specially adapted for analysing two-dimensional or three-dimensional molecular structures, e.g. structural or functional relations or structure alignment
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B45/00—ICT specially adapted for bioinformatics-related data visualisation, e.g. displaying of maps or networks

Landscapes

  • Life Sciences & Earth Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Engineering & Computer Science (AREA)
  • Health & Medical Sciences (AREA)
  • General Health & Medical Sciences (AREA)
  • Medical Informatics (AREA)
  • Biophysics (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Biotechnology (AREA)
  • Evolutionary Biology (AREA)
  • Theoretical Computer Science (AREA)
  • Chemical & Material Sciences (AREA)
  • Crystallography & Structural Chemistry (AREA)
  • Bioethics (AREA)
  • Databases & Information Systems (AREA)
  • Information Retrieval, Db Structures And Fs Structures Therefor (AREA)
  • Processing Or Creating Images (AREA)

Abstract

A molecular structure database system collects multiple data files relating to the same molecule in the same subdirectory, and provides an interface to access all of the collected files from the same molecule using a graphical user interface (GUI) program. The collected files can comprise a variety of information and computer file formats, depending on the type of information to be conveyed to users of the database. A user communicates over a shared network with a secure file server that controls access to the collected files, and the interface to the collected files is provided by a GUI program or client applets. This provides a convenient means of searching molecular structure data for characteristics of interest. Data searching, file viewing, and investigation of multiple representations of molecular structures can be carried out from within a single viewing program.
PCT/US2000/007474 1999-03-19 2000-03-20 Database and interface for 3-dimensional molecular structure visualization and analysis WO2000057309A2 (en)

Priority Applications (3)

Application Number Priority Date Filing Date Title
EP00918205A EP1163610A2 (en) 1999-03-19 2000-03-20 Database and interface for 3-dimensional molecular structure visualization and analysis
JP2000607115A JP2002540508A (en) 1999-03-19 2000-03-20 Database and interface for visualizing and analyzing 3D molecular structure
AU39060/00A AU3906000A (en) 1999-03-19 2000-03-20 Database and interface for 3-dimensional molecular structure visualization and analysis

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US27281499A 1999-03-19 1999-03-19
US09/272,814 1999-03-19

Publications (2)

Publication Number Publication Date
WO2000057309A2 WO2000057309A2 (en) 2000-09-28
WO2000057309A3 true WO2000057309A3 (en) 2001-07-26

Family

ID=23041416

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/US2000/007474 WO2000057309A2 (en) 1999-03-19 2000-03-20 Database and interface for 3-dimensional molecular structure visualization and analysis

Country Status (4)

Country Link
EP (1) EP1163610A2 (en)
JP (1) JP2002540508A (en)
AU (1) AU3906000A (en)
WO (1) WO2000057309A2 (en)

Families Citing this family (9)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US7351690B2 (en) 2000-12-19 2008-04-01 Palatin Technologies, Inc. Knockout identification of target-specific sites in peptides
JP2002297477A (en) 2001-03-28 2002-10-11 Sony Computer Entertainment Inc Delivery system and method
EP1271344A1 (en) * 2001-06-22 2003-01-02 Kelman Gesellschaft für Geninformation mbH Method and device for automatically processing and outputting electronic data
KR100491666B1 (en) * 2002-09-23 2005-05-27 학교법인 인하학원 Method for partitioned layout of protein interaction networks
US9773091B2 (en) 2011-10-31 2017-09-26 The Scripps Research Institute Systems and methods for genomic annotation and distributed variant interpretation
US9418203B2 (en) 2013-03-15 2016-08-16 Cypher Genomics, Inc. Systems and methods for genomic variant annotation
US11342048B2 (en) 2013-03-15 2022-05-24 The Scripps Research Institute Systems and methods for genomic annotation and distributed variant interpretation
WO2014149972A1 (en) 2013-03-15 2014-09-25 The Scripps Research Institute Systems and methods for genomic annotation and distributed variant interpretation
WO2019094647A1 (en) * 2017-11-08 2019-05-16 Stc. Unm. System and methods for graphic encoding of macromolecules for efficient high-throughput analysis

Citations (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5699526A (en) * 1994-03-24 1997-12-16 Ncr Corporation Ordering and downloading resources from computerized repositories
US5859972A (en) * 1996-05-10 1999-01-12 The Board Of Trustees Of The University Of Illinois Multiple server repository and multiple server remote application virtual client computer
US5864871A (en) * 1996-06-04 1999-01-26 Multex Systems Information delivery system and method including on-line entitlements

Patent Citations (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5699526A (en) * 1994-03-24 1997-12-16 Ncr Corporation Ordering and downloading resources from computerized repositories
US5859972A (en) * 1996-05-10 1999-01-12 The Board Of Trustees Of The University Of Illinois Multiple server repository and multiple server remote application virtual client computer
US5864871A (en) * 1996-06-04 1999-01-26 Multex Systems Information delivery system and method including on-line entitlements

Non-Patent Citations (2)

* Cited by examiner, † Cited by third party
Title
FERNANDEZ E B ET AL: "An abstract authorization system for the Internet", PROCEEDINGS NINTH INTERNATIONAL WORKSHOP ON DATABASE AND EXPERT SYSTEMS APPLICATIONS (CAT. NO.98EX130), PROCEEDINGS NINTH INTERNATIONAL WORKSHOP ON DATABASE AND EXPERT SYSTEMS APPLICATIONS, VIENNA, AUSTRIA, 26-28 AUG. 1998, 1998, Los Alamitos, CA, USA, IEEE Comput. Soc, USA, pages 310 - 315, XP002158118, ISBN: 0-8186-8353-8 *
IHLENFELDT W -D ET AL: "BEYOND THE HYPERACTIVE MOLECULE: SEARCH, SALVAGE AND VISUALIZATION OF CHEMICAL INFORMATION FROM THE INTERNET", PACIFIC SYMPOSIUM ON BIOCOMPUTING,SI,SINGAPORE, WORLD SCIENTIFIC, vol. SYMP. 1, 3 January 1996 (1996-01-03), pages 384 - 395, XP000751937, ISBN: 981-02-2578-4 *

Also Published As

Publication number Publication date
AU3906000A (en) 2000-10-09
EP1163610A2 (en) 2001-12-19
JP2002540508A (en) 2002-11-26
WO2000057309A2 (en) 2000-09-28

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