WO2000040609A1 - Novel protein - Google Patents
Novel protein Download PDFInfo
- Publication number
- WO2000040609A1 WO2000040609A1 PCT/JP1999/007335 JP9907335W WO0040609A1 WO 2000040609 A1 WO2000040609 A1 WO 2000040609A1 JP 9907335 W JP9907335 W JP 9907335W WO 0040609 A1 WO0040609 A1 WO 0040609A1
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- WO
- WIPO (PCT)
- Prior art keywords
- protein
- dna
- gene
- oligonucleotide
- cell
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P37/00—Drugs for immunological or allergic disorders
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P43/00—Drugs for specific purposes, not provided for in groups A61P1/00-A61P41/00
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K38/00—Medicinal preparations containing peptides
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K39/00—Medicinal preparations containing antigens or antibodies
Definitions
- the present invention relates to a novel F-WD protein, a DNA encoding the protein, a vector containing the DNA, a transformant transformed with the vector, a method for producing the F-WD protein, and recognition of the protein.
- the present invention relates to an antibody, an oligonucleotide comprising a partial sequence of the DNA, or a method for using these.
- the present invention is useful for prevention, treatment, diagnosis, pathological analysis, and the like of diseases caused by enhanced or decreased protein degradation.
- proteolysis plays a very important role.
- selective proteolysis by the eukaryotic energy-dependent proteolysis system the ubiquitin-proteasome system, involves cell cycle, apoptosis, transcriptional regulation, metabolic regulation, signal transduction, stress response,
- immune initiation Cell Engineering, 15, 888-896 (1996), Trends in Biological Science, 21, 96- 102 (1996), Cell, 92, 367-380 (1998)].
- TNF—protein IB which regulates the activity of the transcription factor NF cB of inflammatory site-powered proteins such as spleen, is also known to be degraded by this pathway. Have been. Therefore, controlling this ubiquitin-proteasome system is considered to be effective for the treatment, prevention and diagnosis of various diseases.
- the ubiquitin-proteasome system is the first step of ⁇ ubiquitination, '' in which the ubiquitin protein is covalently bonded to the lysine residue of the target protein via an isopeptide bond to enter the degradation pathway.
- the ubiquitinated target protein consists of a second step in which it is recognized and degraded by the proteasome complex.
- the specificity of molecular recognition in the first step is particularly important for degrading specific proteins at specific times [Cell, 84, 813-815 (1996)].
- Ubiquitination of proteins consists of the following processes. First, the carboxy-terminal glycine residue of ubiquitin is activated by ubiquitin activating enzyme (hereinafter also referred to as E1) and ATP, and the ubiquitin is thioester bonded to a specific cysteine residue of E1. Next, the activated ubiquitin is transferred to a specific cysteine residue of ubiquitin-conjugating enzyme (hereinafter, also referred to as E2), and forms a thioester bond. The ubiquitin bound to E2 is transferred to a specific lysine residue of the target protein, and the target protein is ubiquitinated by isopeptide bond.
- E1 ubiquitin activating enzyme
- E2 ubiquitin-conjugating enzyme
- Ubiquitination of the target protein may occur directly from E2, but in many cases requires the presence of ubiquitin ligase (hereinafter also referred to as E3) [Cell Engineering! ⁇ , 898-904 (1996), Trends in Cell Biology, 5, 428-434 (1995)].
- E3 ubiquitin ligase
- E3 is extremely rich in molecular diversity, and is known to consist of a single protein or to form a protein complex, and is thought to determine the substrate specificity of ubiquitination. Have been.
- E 3 is its subunit structure and primary sequence Based on the similarity, the group consisting of a hect-domain (hect-domein), the group consisting of a protein complex called APC (anaphase promoting complex), and the group consisting of SCF (Skpl-Cdc53 / Cullin-F-box) protein complex There are several groups, such as groups.
- SCF is a recently discovered group that has received particular attention as E3, which is involved in the degradation of cell cycle-related proteins.
- the budding yeast S. cerevisiae S. cerevisiae G 1 cyclin (C lnl, C ln2) and the cyclin-dependent quinase zeinhibi Yuichi (CDK I) (S icl, Far 1) It has been reported that it is ubiquitinated and degraded by a specific SCF protein complex [Cell Engineering, 907-916 (1996), Cell, 91, 149-151 (1997), Proc. Natl. Acad. Sci. USA, 92, 2563-2567 (1995), Cell, 81, 279-288 (1995)].
- the F box protein has a region called F box consisting of 40 to 50 amino acids near the amino terminus of the protein, and when forming an SCF protein complex, binds to the Skp1 protein at this portion. be able to.
- F box protein has a function as a substrate-specific adapter [Trends in Genetics, 14, 236-243 (1998)].
- many F-box proteins have a sequence called a WD domain or leucine-rich repeat near the carboxy terminus of the protein, and it is thought that this region interacts with a specific substrate protein.
- F-box proteins those with a WD domain near the carboxy terminus The loop is called F-WD protein.
- the WD domain usually has tributophan-aspartic acid (WD) as its last amino acid residue, and has a sequence in which an amino acid sequence consisting of about 20 to 40 residues is repeated 4 to 8 times, Also called WD40 repeat, GH (glycine-histidine) -WD repeat, etc. It is known that the WD domain exists in many proteins [Nature, 371, 297-300 (1994)]. Furthermore, it is known that the WD domain in the trimeric G protein /? — Subunit has a structure in which seven WDs form a propeller-like ring [Nature, 379, 3U-319 & 369-374] (1996)].
- Genes encoding the F-WD protein include a gene (Cdc4) encoding the F3-WD protein of E3 of CDKI (Sicl, Far1) of Saccharomyces cerevisiae, and a fission yeast gene.
- F-WD protein (Me t 30), a gene encoding F-WD protein involved in the degradation of N.ch./L in 12 of Caenorhabditis elegans (Se 1-10), A gene (human ⁇ -TRCP) that binds to the Vpu protein of human immunodeficiency virus HIV-1 and encodes the F-WD protein involved in the degradation of the CD4 protein.
- F-WD proteins are eukaryotic SCF-type proteins. It is ubiquitous as a subunit of E3, and is expected to have many more types [Cell, 86, 263-274 (1996) Cell, 91, 221-230 (1997), Genes & Development, 11, 1548-1560 (1997), Genes & Development, 11, 3182-3193 (1997), Nature, 391, 493-496 (1998), Genes & Development, 12, 2587-2597 (1998), Molecular Cell, 1, 565-574 (1998), Genes & Development, 11,3046-3060 (1997), Cell, 91, 209-218 (1997)].
- the present invention uses a novel F-WD protein, a DNA encoding the F-WD protein, and an antibody recognizing the protein to produce neurodegenerative diseases such as Alzheimer's disease and Parkinson's disease, leukemia, lung cancer, colon cancer, Diseases caused by increased or decreased protein degradation, such as malignant tumors such as breast cancer, autoimmune diseases such as chronic indirect rheumatism, inflammatory diseases such as asthma, and viral diseases such as acquired immunodeficiency syndrome (AIDS). It aims to provide prophylactic, therapeutic and diagnostic agents.
- neurodegenerative diseases such as Alzheimer's disease and Parkinson's disease, leukemia, lung cancer, colon cancer, Diseases caused by increased or decreased protein degradation, such as malignant tumors such as breast cancer, autoimmune diseases such as chronic indirect rheumatism, inflammatory diseases such as asthma, and viral diseases such as acquired immunodeficiency syndrome (AIDS).
- AIDS acquired immunodeficiency syndrome
- the present inventors based on the gene sequence information of fission yeast Pop1 +, based on EST (Expressed Sequence Tag) registered in the gene sequence database Genbank of random human cDNA sequence, BLAST2.0 [Nucleic Acids Research , 25, 3389-3402 (1997)] and frame search [Compugen, Israel] Using homology search software, analysis and analysis of a portion of the human cDNA with homology to the F box region of popl + Sequences (AA252600, AA452542, AA579079, M536071) were found. Using these EST sequences, cDNA of a novel F-WD protein was obtained and its nucleotide sequence was analyzed, thereby completing the present invention. That is, the present invention relates to the following inventions (1) to (49).
- a protein consisting of the amino acid sequence shown in SEQ ID NO: 1.
- An F-WD protein comprising an amino acid sequence in which one or more amino acids have been deleted, substituted or added in the amino acid sequence shown in SEQ ID NO: 1.
- the transformant according to any one of (10) to (13) is cultured in a medium, and the protein according to any one of (i) to (4) is produced and accumulated in the culture.
- a method for screening a compound which comprises bringing the protein according to any one of (1) to (4) into contact with a test sample, and varying the ubiquitin ligase activity of the protein.
- a method for screening a compound which comprises bringing a protein according to any one of (1) to (4) into contact with a test sample, and varying a proteolysis promoting activity of the protein.
- (26) varying expression of a gene encoding the protein according to any one of (1) to (4), which comprises contacting a cell expressing the protein according to any one of (1) to (4) with a test sample; Screening method for the compound to be used.
- a method for detecting mRNA encoding the protein according to any one of (1) to (4).
- a method for suppressing the expression of a protein according to any one of 1) to (4).
- (34) A promoter DNA that controls transcription of the gene encoding the protein according to any one of (1) to (4).
- a test sample is brought into contact with a transformant containing the promoter DNA described in (34) and a plasmid containing the repo overnight gene ligated downstream of the promoter DNA,
- a method for screening a compound that changes the efficiency of transcription by said promoter comprising measuring the translation product content of said reporter gene.
- the reporter gene is chloramphenicol A gene selected from the group consisting of a ratase gene, a galactosidase gene, a luciferase gene and a green fluorescein protein gene.
- a preventive agent for a disease caused by an increase or decrease in protein degradation comprising the protein according to any one of (1) to (4).
- a therapeutic agent for a disease caused by enhanced or reduced proteolysis comprising the protein according to any one of (1) to (4).
- a diagnostic agent for a disease caused by enhanced or reduced protein degradation comprising the protein according to any one of (1) to (4).
- a preventive agent for a disease caused by enhanced or reduced proteolysis comprising the DNA according to any one of (5) to (7).
- a therapeutic agent for a disease caused by enhanced or reduced proteolysis comprising the DNA according to any one of (5) to (7).
- a diagnostic agent for a disease caused by an increase or decrease in protein degradation comprising the DNA according to any one of (5) to (7).
- a preventive agent for a disease caused by enhanced or reduced proteolysis comprising the oligonucleotide according to (15).
- a therapeutic agent for a disease caused by increased or decreased proteolysis comprising the oligonucleotide according to (15).
- a diagnostic agent for a disease caused by increased or decreased proteolysis comprising the oligonucleotide according to (15).
- a preventive agent for a disease caused by an increase or decrease in protein degradation comprising the antibody according to (16).
- a therapeutic agent for a disease caused by enhanced or reduced proteolysis comprising the antibody according to (16).
- the protein of the present invention includes a protein consisting of the amino acid sequence shown in SEQ ID NO: 1 and a protein consisting of the amino acid sequence shown in SEQ ID NO: 1 in which one or more amino acids have been deleted, replaced or added.
- the F-WD protein refers to a protein having an F box near the amino terminal of the protein and a WD domain near the carboxy terminal.
- the F-WD protein can form ubiquitin ligase as a protein complex.
- the F box is A 1 PX n A 2 A 3 A 4 X n A 5 A 6 A 7 X B A 8 A 9 A 10 X p A u A 12 A 13
- the L, V, F or M the A 2 is E or D
- a 3 is I, L or V
- a 4 is I, L or V
- a 5 is K, R, N Or Q
- a 6 is I, V or L
- a 7 is L
- a 8 is Y, ⁇ , ⁇ , ⁇ or R
- ⁇ 9 is I, L, V, ⁇ or F
- a 1 () is D, E or P
- a réelleis D, E, S or T A 12 is I, L or V
- a 13 is I, L or V
- I is isoleucine
- L mouth isine
- V valine
- F is phenylalanine
- M methionine
- E gluamic acid
- D is aspartic acid
- K is lysine
- R is arginine
- N is asparagine
- Q is glutamine
- Y is tyrosine
- H histidine
- A is alanine
- P proline
- S serine
- T threonine
- C cysteine.
- X represents any amino acid
- n is 1 to 5
- m is 1 to 10
- q is 2 to 10
- q is 2 to 10
- q is 2 to 3
- s is 0 to 2. Represents an individual.
- the F-WD protein forms, for example, an SCF protein complex
- it can bind to the Skp1 protein at the F box [Cell, 86, 263-274 (1996), Trends in Genetics, 14, 236-243 (1998)].
- the WD domain has, as its last amino acid residue, tributophan-aspartic acid (WD) or its similar amino acid residue, and often has glycine-histidine (GH) or a similar amino acid residue at its beginning, and An amino acid sequence consisting of about 20 to 40 residues has a sequence repeated 4 to 8 times.
- WD tributophan-aspartic acid
- GH glycine-histidine
- the number of amino acids to be deleted, substituted or added is not particularly limited, but is preferably one to several tens, particularly preferably one to several amino acids.
- the protein of the present invention In order for the protein of the present invention to have a function as an F-WD protein, it must have at least 60%, usually at least 80%, and especially at least 95% homology with the amino acid sequence described in SEQ ID NO: l fe. Is preferred. Further, it is preferable that the homology is 98% or more.
- deletion, substitution or addition of amino acids can be carried out by a site-specific mutagenesis method or the like which is a well-known technique before filing the application.
- the term “one or several amino acids” means an amino acid of such a number that can be deleted, substituted or added by site-directed mutagenesis.
- Such an F-WD protein consisting of an amino acid sequence in which one or more amino acids have been deleted, substituted or added is known as Molecular Cloning, A Laboratory Manual, Second Edition, Cold Spring Harbor Laboratory Press (1989) (hereinafter referred to as "Molecular Cloning").
- Examples of the DNA of the present invention include a DNA encoding the protein of the present invention, for example, a DNA having the nucleotide sequence shown in SEQ ID NO: 2 as an DNA encoding an F-box protein.
- a DNA having the nucleotide sequence shown in SEQ ID NO: 2 as an DNA encoding an F-box protein since a plurality of kinds of genetic codes generally exist for one amino acid, even if the DNA of the present invention encodes the DNA of the present invention, even if the DNA has a nucleotide sequence different from that of SEQ ID NO: 2, Included in DN A.
- the DNA of the present invention includes a DNA encoding the protein of the present invention, a DNA having the nucleotide sequence of SEQ ID NO: 2, a DNA that hybridizes with the DNA under stringent conditions, and a sequence complementary to these DNAs. DNA having the following.
- DNA capable of hybridizing under stringent conditions refers to a DNA encoding the protein of the present invention, a DNA having the nucleotide sequence of SEQ ID NO: 2 as a probe, and colony 'hybridization method, plaque'.
- a 0.01- to 2-fold concentration of SSC solution (The composition of a 1-fold concentration SSC solution consists of 150 mM sodium chloride and 15 mM sodium citrate.) Can be identified by washing the filter under the conditions of 65-80 ° C.
- Hybridization is performed by the method described in Molecular 'Cloning 2nd edition, Current Protocols' in' Molecular biology, DNA Clonin 1: Core Techniques, A Practical Approach, Second Edition, Oxford University (1995), etc. It can be performed according to.
- a hybridizable DNA a DNA having at least 60% or more homology with the nucleotide sequence represented by SEQ ID NO: 2, preferably a DNA having 80% or more homology, more preferably 95% DNAs having the above homology can be mentioned.
- the stringent condition is particularly preferably a condition that allows hybridization only when 95% or more, and more preferably 98% or more homology exists.
- Examples of the database include bases such as GenBank, EMBL, and DDBJ, and databases based on amino acid sequences such as GenPept, PIR, and Swiss-Prot.
- the DNA of the present invention can be obtained from a partial nucleotide sequence of a gene such as EST having homology to pop 1+ by the following method.
- Methods for preparing total RNA include the guanidine thiocyanate-cesium trifluoroacetate method [Methods in Enzymology, 154, 3 (1987)], the acid guanidine thionate “phenol” and “clonal form (AGPC) method” [Analytical Biochemistry , 162, 156 (1987), Experimental Medicine, 1937 (1991)].
- an oligo (dT) -immobilized cellulose column method molecular cloning second edition
- a method using oligo dT latex, or the like can be used.
- Kits such as Fast Track mRNA Isolation Kit [Fast Track mRNA Isolation Kit; Invitrogen] and Quick Prep mRNA Purification Kit [Quick Prep mRNA Purification Kit; Pharmacia] Can be used to prepare mRNA directly from tissues or cells.
- a suitable cell or tissue a type of cDNA library containing ESTs and the like found from a database is examined, and the cell or tissue used for constructing the library, or a cell derived from the tissue is used. It is preferable to use a cell line or the like.
- RNA or mRNA Using the obtained total RNA or mRNA, prepare a cDNA library by a conventional method.
- a phage vector or a plasmid vector can be used as a closing vector for preparing a cDNA library as long as it can replicate autonomously in Escherichia coli K12 strain.
- any microorganism belonging to Escherichia coli can be used. Specifically, Escherichia coli XLl-Blue MRF '[Strata Gene, Strategies, Mutual, 81 (1992)], Escherichia coli C600 [Genetics, 39, 440 (1954)], Escherichia coli Y1088 [Science, 222, 778 (1983)], Escherichia coli Y1Q90 [Science, 222, 778 (1983)], Escherichia coli NM522 [J. Mol. Biol., 166, 1 (1983)], Escherichia coli K802 [J. Mol.
- a commercially available cDNA library can also be used.
- cDNAs from human organs such as Clonetech, Lifetech Oriental, etc. You can give a library.
- a cDNA clone having the DNA of the present invention was cloned by colony hybridization or plaque hybridization using an isotope or a fluorescently labeled probe [Molecular Cloning 2nd edition].
- a probe using a primer based on the nucleotide sequence that has been partially identified, a method using polymerase 'chain' reaction (PCR) [PCR Protocols, Aca demic Press (1990)] (PCR The method can also be used to amplify a fragment of a part of the cDNA or to use an oligonucleotide based on the nucleotide sequence that is partially identified.
- a primer prepared based on the nucleotide sequence can be used as the primer.
- the full-length DNA of the present invention can be obtained.
- the nucleotide sequence of the DNA obtained by the above method can be obtained by integrating the DNA fragment as it is, or after digestion with an appropriate restriction enzyme or the like, into a vector by a conventional method, and then using a conventional nucleotide sequence analysis method, for example, Sanger (Sanger Natl. Acad. Sci. USA, 74, 5463 (1977)] or Perkin Elmer (373A, DNA Sequencer), Pharmacia, Lycoa (LI- It can be determined by analysis using a base sequence analyzer such as COR).
- a base sequence analyzer such as COR
- the plasmid containing the DNA of the present invention obtained by the above method includes, for example, a plasmid phMD6 having a DNA consisting of the base sequence represented by SEQ ID NO: 2.
- Escherichia coli DH5 / phMD6 containing plasmid phMD6 was designated as FERM BP-66 11 on December 24, 1998 by the Institute of Biotechnology, Institute of Biotechnology, Tsukuba, Ibaraki, Japan. Deposited at Higashi 1-3-1, 1-3 (zip code 305-8566).
- the desired DNA can also be prepared by chemical synthesis using a DNA synthesizer.
- the DNA synthesizer include a DNA synthesizer manufactured by Shimadzu Corporation using the thiophosphite method, and a Perkin 'Elma's DNA synthesizer model 1392 using the phosphoramidite method.
- nucleotide sequence is a novel sequence can be determined by searching a nucleotide sequence database such as GenBank, EMBL and DDBJ using a homology search program such as BLAST. This can be confirmed by the absence of a nucleotide sequence showing obvious homology that is considered to match the nucleotide sequence of an existing gene.
- the novel DNA sequence obtained by the above method includes, for example, the nucleotide sequence shown in SEQ ID NO: 2.
- an antibody having a partial sequence of the DNA of the present invention can be obtained by a conventional method or the above-mentioned DNA synthesizer.
- Oligonucleotides such as sense oligonucleotides and sense oligonucleotides can be prepared.
- oligonucleotide examples include a DNA having the same sequence as the contiguous 5 to 60 bases in the base sequence of the DNA or a DNA having a sequence complementary to the DNA. And a DNA having the same sequence as the consecutive 5 to 60 bases in the base sequence represented by SEQ ID NO: 2 or a DNA having a sequence complementary to the DNA.
- Tm melting temperature
- oligonucleotide examples include an oligonucleotide represented by SEQ ID NO: 3 or 4.
- derivatives of these oligonucleotides can also be used as the oligonucleotide of the present invention.
- Derivative oligonucleotides include derivative oligonucleotides in which the phosphate ester bond in the oligonucleotide has been converted to a phosphorothioate bond, and phosphodiester bonds in the oligonucleotide have been converted to N3, -P5 'phosphoramidate bonds.
- Derived oligonucleotide Derivative oligonucleotide in which ribose and phosphodiester bond in oligonucleotide is converted to peptide nucleic acid bond, Derivative oligonucleotide in which peracyl in oligonucleotide is substituted with C-5 provinyl peroxyl Derivative oligonucleotides in which peracyl in oligonucleotides is substituted with C-5 thiazylperacyl, derivative oligonucleotides in which cytosines in oligonucleotides are substituted with C-5 propynylcytosine, oligonucleotides Derivative oligonucleotides in which cytosine in the oligonucleotide has been replaced with phenoxazine-modified cytosine, derivative oligonucleotides in which the ribose in the oligonucleotide
- a recombinant vector in which the DNA of the present invention is inserted into a suitable expression vector at one time downstream of a promoter, and introducing the vector into a host cell, transformation for expressing the protein of the present invention is performed.
- transformation for expressing the protein of the present invention is performed.
- the protein of the present invention can be produced.
- any cell that can express the target gene such as bacteria, yeast, animal cells, insect cells, and plant cells, can be used.
- an expression vector a vector capable of autonomously replicating in the above-described host cell, which can be integrated into a chromosome, and which contains a promoter at a position where the DNA of the present invention can be transcribed is used. .
- the recombinant vector containing the DNA encoding the protein of the present invention is capable of autonomous replication in the prokaryote and has a promoter, a ribosome binding sequence, It is preferably a recombinant vector comprising the DNA of the present invention and a transcription termination sequence.
- the gene controlling the promotion may be included.
- expression vectors include, for example, pBTrp2, pBTac1, pBTac2 (both Boehringer Mannheim), PKK233-2 (Pharmacia), pSE280
- Any promoter may be used as long as it can be expressed in a host cell.
- - defense Promo Isseki one P ⁇ £
- promoter evening one P lac
- P L promoter Isseki one P L promoter Isseki one, ⁇ ⁇ promo Isseki one, ⁇ 7 promoter evening one, etc., to Eshierihi ⁇ coli Ya phage, etc.
- the origins of Promo One Night, SP01 Promo One Night, SP 02 Promo One Night, pe ⁇ Promo Night, etc. can be listed.
- two sets of promoters, ⁇ trp are connected in series (P ⁇ x2); ⁇ promoters, lacT7 promoters, and promoters designed artificially like let I promoter. Etc. can also be used.
- the ribosome binding sequence it is preferable to use a plasmid in which the distance between the Shine-Dalgarno sequence and the initiation codon is adjusted to an appropriate distance (for example, 6 to 18 bases).
- a transcription termination sequence is not necessarily required for expression of the DNA of the present invention, but it is preferable to arrange a transcription termination sequence immediately below a structural gene.
- Host cells include microorganisms belonging to the genus Escherichia, Serratia, Bacillus, Brevibacterium, Corynebacterium, Microbacterium, Pseudomonas, etc., such as Escherichia coli XLl-Blue Escherichia coli XL2-Blue, Escherichia coli DH1, Escherichia coli MC1000, Escherichia coli KY3276, Escherichia coli W1485 ⁇ Escherichia coli JM109, Escherichia coli HB101, Escherichia coli No.49, Escherichia coli W3110, Escherichia coli NY49, Serratia font Serratia; liquefaciens, Serrat ia marcescens Bacillus subtil is, Bacillus amyloliquefaciens x Brevibacte rium ammmoniageiies, Brevibacterium i thigh ariop
- any method for introducing DNA into the above host cells can be used, for example, a method using calcium ions
- yeast If yeast is used as the host cell, use YEpl3 as an expression vector.
- Any promoter can be used as long as it can be expressed in yeast.
- ⁇ 05 Promo One PGK Promo One, GAP Promo One, ADH Promo One, gal 1 promoter, gal 10 promoter, heat shock protein promoter, MF al promoter, CUP 1 promoter, etc.
- host cells include yeasts belonging to the genera Saccharomyces, Schizosaccharomyces, Kluyveromyces, Trichosporon, Schizinomyces, Pichia, etc., such as Saccharomyces cerevisiae Schizosaccharomyces pombe, Kluyveromyces lactis, Trichosporon pullulans, Schwanniomyces alluvius, Pichia pastor is and the like.
- any method for introducing DNA into yeast can be used.
- electroporation Methods in Enzymology, 194, 182 (1990)
- lithium acetate method Journal of Bacteriology, 153, 163 (1983)]
- examples of expression vectors include pc DNA I / Amp (Invitrogen), pcDNAI, pCDM8 [Nature, 329, 840 (1987)], pAGE107 [ -22979, Cytotechnology, 3, 133 (1990)], pREP4 (Invitrogen), pAGE 103 [Journal of Biochemistry, 101, 1307 (1987)], pAMo, pAMoA, pAS3-3 (Japanese Patent Laid-Open No. 2-227075), etc. Is used.
- Any promoter can be used as long as it can be expressed in animal cells.
- the enhancer of the IE gene of human CMV may be used together with the promoter.
- Host cells include mouse myeloma cells, rat 'myeloma cells', mouse' hybridoma cells, human namalwa cells, Namalwa KJM-1 cells, human fetal kidney cells or human leukemia Cell, African green monkey kidney cell, Chinese hamster cell CH0 cell or HBT5637 (JP-A-63-299).
- Mouse '' myeloma cells include SP2 / 0, NS0, etc.
- Rat '' myeoma cells include YB2 / 0, etc.
- human fetal kidney cells HEK293 ATCC: CRL-1573
- Human leukemia cells include BALL-1 and the like
- African green monkey kidney cells include COS-1 and COS-7.
- Any method for introducing a recombinant vector can be used so long as it is a method for introducing DNA into animal cells.
- the method include the electroporation method [Cytotechnology, 3, 133 (1990)] and the calcium phosphate method. Kaihei 2-227075), the lipofection method [Proc. Natl. Acad. Sci. USA, 84, 7413 (1987)], and the methods described in Virology, 52, 456 (1973).
- Baculovirus 'Expression' Vectors 'Laboratory' Manual Baculovirus Expression Vectors, A Laboratory Manual, WH Freemanana Company, New York (1992)] Molecular Bio Logistic Biology, A Laboratory Manual ⁇ Current-f. Proteins can be expressed by the method described in, for example, "Kores, Cress, in Molecular Biology", Biology, Bio / Technology, 6, 47 (1988).
- the recombinant gene transfer vector and baculovirus are co-transfected into insect cells to obtain recombinant virus in the culture supernatant of insect cells, and then the recombinant virus is infected with insect cells to express the protein.
- the recombinant gene transfer vector and baculovirus are co-transfected into insect cells to obtain recombinant virus in the culture supernatant of insect cells, and then the recombinant virus is infected with insect cells to express the protein.
- Examples of the gene transfer vector used in the method include pVL1392, pVL1393, and pBlueBacII (all from Invitrogen) and the like.
- a virus that infects night moth insects such as Atographa, Ariformi, Nuclea, Polyhedrosis, and the like (Autographa californica nuclear polyhedrosis virus) can be used.
- ovary cells of Spodoptera frugiperda As the host cells, ovary cells of Spodoptera frugiperda, ovary cells of Trichoplusia, cultured cells derived from phytococcus ovary and the like can be used.
- the ovarian cells of Spodoptera frugiperda include Sf9 and Sf21 (baculovirus '' High ovarian cells of Trichoplu ⁇ , BTI-TN-5B1-4 (Invitrogen), etc. Bombyx mori as cultured cells derived from silkworm ovary N4 etc. can be given.
- Examples of a method for co-transferring the above-described recombinant gene into insect cells and the above baculovirus into an insect cell for preparing a recombinant virus include a calcium phosphate method (Japanese Patent Laid-Open No. 2-227075), a lipofection method, and the like. [Proc. Natl. Acad. Sci. USA, 84, 7413 (1987)].
- Ti plasmid When a plant cell is used as a host, for example, Ti plasmid, tobacco mosaic virus vector, or the like can be used as an expression vector.
- Any promoter can be used as long as it can be expressed in plant cells.
- cauliflower mosaic virus (CaMV) 35S promoter, inineactin 1 promoter, etc. Can be.
- Examples of the host cell include plant cells of tobacco, potato, tomato, carrot, soybean, abrana, alfa alfa, rice, wheat, wheat, and the like.
- any method for introducing DNA into plant cells can be used.
- Agrobacterium Japanese Patent Application Laid-Open No. 59-140885, 60-70080, W094 / 00977
- an electroporation method Japanese Patent Application 60-251887
- a method using a particle gun Patent No. 2606856, Patent No. 2517813
- Patent No. 2606856, Patent No. 2517813 Patent No. 2606856, Patent No. 2517813
- sugar or sugar chain-added protein When expressed by yeast, animal cells, insect cells or plant cells, a sugar or sugar chain-added protein can be obtained.
- the transformant obtained as described above is cultured in a medium, and the culture of the present invention is added to the culture.
- the protein of the present invention can be produced by producing and accumulating the protein and collecting the protein from the culture.
- the method for culturing the transformant of the present invention in a medium can be performed according to a usual method used for culturing a host.
- the protein of the present invention is returned to the living body by introducing the protein of the present invention into the patient. It can also be expressed in the body.
- the method for culturing the transformant of the present invention in a medium can be performed according to a usual method used for culturing a host.
- a culture medium for culturing a transformant obtained using a prokaryote such as Escherichia coli or a eukaryote such as yeast as a host contains a carbon source, a nitrogen source, inorganic salts, and the like that can be used by the organism. Either a natural medium or a synthetic medium may be used as long as the medium can efficiently culture the transformant.
- the carbon source may be any one that can be assimilated by the organism, such as glucose, fructose, sucrose, molasses containing them, carbohydrates such as starch or hydrolyzed starch, and organic acids such as acetic acid and propionic acid. Alcohols such as acid, ethanol, and propanol can be used.
- Nitrogen sources include ammonia, ammonium chloride, ammonium sulfate, ammonium acetate, ammonium phosphate, and other inorganic or organic acid ammonium salts, other nitrogen-containing compounds, and peptone, meat extract, yeast extract, and copper extract.
- casein hydrolyzate, soybean meal and soybean meal hydrolyzate, various fermented cells, digested products thereof, and the like can be used.
- potassium potassium phosphate potassium potassium phosphate, magnesium phosphate, magnesium sulfate, sodium chloride, ferrous sulfate, manganese sulfate, copper sulfate, calcium carbonate, and the like can be used.
- the cultivation is usually carried out under aerobic conditions such as shaking culture or deep aeration stirring culture.
- Culture The fermentation temperature is preferably 15 to 40 ° C, and the culture time is usually 16 hours to 7 days.
- the pH is maintained at 3.0 to 9.0.
- the pH is adjusted using an inorganic or organic acid, an alkaline solution, urea, calcium carbonate, ammonia, or the like.
- an antibiotic such as ampicillin or tetracycline may be added to the medium during the culture.
- an inducer may be added to the medium, if necessary.
- an inducer may be added to the medium, if necessary.
- isopropyl-15-D-thiogalactoviranoside or the like is transformed with an expression vector using a ⁇ 2 promoter.
- indoleacrylic acid or the like may be added to the medium.
- Culture is carried out usually p H 6 ⁇ 8, 3 0 ⁇ 4 0 ° 5% C 0 2 under the conditions such as the presence 1-7 days.
- antibiotics such as kanamycin, penicillin, and streptomycin may be added to the medium during the culture.
- TNM-FH media As culture media for transformants obtained using insect cells as hosts, commonly used TNM-FH media [Pharmingen], Sf-900 II SFM media (Life's Technologies, Inc.) ), ExCell400, ExCell405 [JRH Biosciences, Inc.], Grace's Insect Medium [Nature 195, 788 (1962)] and the like can be used.
- the cultivation is usually performed under conditions of pH 6 to 7, 25 to 30 ° C, etc. for 1 to 5 days.
- an antibiotic such as genyumycin may be added to the medium during the culture.
- a transformant obtained using a plant cell as a host can be cultured as a cell or after being differentiated into a cell organ of a plant.
- a medium for culturing the transformant commonly used Murashige 'and' squeeg (MS) medium, white (White) medium, or plant medium such as auxin, cytokinin, etc. And the like can be used.
- the cultivation is usually performed at pH 5 to 9, 20 to 40 ° C for 3 to 60 days.
- antibiotics such as kanamycin and hygromycin may be added to the medium during the culture.
- a transformant derived from a prokaryote, yeast, animal cell, insect cell or plant cell having a recombinant vector into which the DNA encoding the protein of the present invention has been incorporated is cultured according to a conventional culture method.
- the protein can be produced by accumulating and producing the protein, and collecting the protein from the culture.
- a method for expressing a gene in addition to direct expression, secretory production, fusion protein expression, and the like can be performed according to the method described in Molecular 'Cloning 2nd edition.
- the method for producing the protein of the present invention includes a method of producing the protein in a host cell, a method of secreting the protein out of the host cell, and a method of producing the protein on the outer membrane of the host cell.
- the method can be selected by changing the structure.
- the protein can be actively secreted out of the host cell.
- the protein of the present invention is expressed in a form in which a signal peptide is added in front of the protein containing the active site of the protein of the present invention using a gene recombination technique, so that the protein of the present invention can be positively extracellularly outside the host cells. It can be secreted.
- the production amount can be increased using a gene amplification system using a dihydrofolate reductase gene or the like.
- the transgenic animal or plant cells are redifferentiated to create transgenic non-human animals or transgenic plants (transgenic plants) into which the gene has been introduced. Can be used to produce the protein of the present invention.
- the protein is produced by breeding or cultivating according to a usual method to produce and accumulate the protein, and collecting the protein from the animal or plant individual. can do.
- Methods for producing the protein of the present invention using animal individuals include, for example, known methods (American Journal of Clinical Nutrition, 63, 639S996), American Journal of Clinical Nutrition, 63, 627S (1996), Bio / Technology, 9, 830 (1991)], and a method for producing the protein of the present invention in an animal constructed by introducing a gene.
- a transgenic non-human animal into which DNA encoding the protein of the present invention has been introduced is bred, the protein is produced and accumulated in the animal, and the protein is collected from the animal. By doing so, the protein can be produced.
- the place of production and accumulation in the animal include milk of the animal (JP-A-63-309192), eggs, and the like.
- the promoter used at this time any promoter that can be expressed in animals can be used.
- the promoter, casein promoter, casein promoter, and lactate, which are breast cell-specific promoters, can be used. Globulin Promo overnight, whey mono-protein Promoter or the like is preferably used.
- Examples of a method for producing the protein of the present invention using plant individuals include, for example, transgenic plants into which DNA encoding the protein of the present invention has been introduced [Tissue Culture, 20 (1994), 21 (1995), Trends in Biotechnology, 15, 45 (1997)], producing and accumulating the protein in the plant, and collecting the protein from the plant to produce the protein. There is a way to do it. (3) Isolation and purification of expressed protein
- a conventional enzyme isolation and purification method may be used. Further, the protein can be efficiently purified by affinity chromatography using an antibody against the protein itself.
- the cells produced by the transformant of the present invention are collected by centrifugation after completion of culturing, etc. After suspending the liquid, the cells are crushed by an ultrasonic crusher, French press, Menton-Gaurin homogenizer, Dynomill, etc. to obtain a cell-free extract.
- a normal enzyme isolation and purification method that is, a solvent extraction method, a salting out method using ammonium sulfate, a desalting method, a precipitation method using an organic solvent, Getylaminoethyl (DEAE)-Sepharose, DIAION HPA-75 (Mitsubishi Kasei) Anion exchange chromatography using resin, cation exchange using S-Sepharose FF (Pharmacia) etc.
- a purified sample can be obtained using an electrophoresis method such as point electrophoresis alone or in combination.
- an electrophoresis method such as point electrophoresis alone or in combination.
- the insoluble form of the recovered protein is solubilized with a protein denaturant or the like. After diluting or dialyzing the solubilized solution to return the protein to a normal three-dimensional structure, a purified sample of the protein can be obtained by the same isolation and purification method as described above.
- the protein of the present invention or its derivative such as a modified sugar is secreted extracellularly, the protein or its derivative such as a sugar chain adduct can be recovered in the culture supernatant.
- a purified fraction is obtained by treating the culture by a method such as centrifugation as described above to obtain a soluble fraction, and by using the same isolation and purification method as described above from the soluble fraction. Obtainable.
- the protein of the present invention can be produced as a fusion protein with another protein, and purified using affinity chromatography using a substance having an affinity for the fused protein.
- affinity chromatography using a substance having an affinity for the fused protein.
- the method of Lowe et al. Proc. Natl. Acad. Sci. USA, 86, 8227 (1989), Genes Develop., 4, 1288 (1990)] JP-A-5-336963, JP-A-6-823021.
- the protein of the present invention can be produced as a fusion protein with protein A and purified by affinity chromatography using imnoglobulin G.
- the protein of the present invention can be produced as a fusion protein with an F1ag peptide and purified by affinity chromatography using an anti-F1ag antibody [Proc. Natl. Acad. Sci. USA , 86, 8227 (1989), Genes Develop., 4, 1288 (1990)]. Further, the protein can be purified by affinity chromatography using an antibody against the protein itself.
- Examples of the protein obtained in this manner include a protein having the amino acid sequence shown in SEQ ID NO: 1.
- the protein of the present invention can also be produced by a chemical synthesis method such as the Fmoc method (fluorenylmethyloxycarbonyl method) and the tBoc method (t_butyloxycarbonyl method). be able to. Also, Advanced ChemTech, Perkin Elma, Pharmacia, and Protein Technology
- Chemical synthesis can also be performed using a peptide synthesizer such as Synthecell-Vega, PerSeptive, or Shimadzu Corporation.
- Structural analysis of the purified protein of the present invention is performed by a method generally used in protein chemistry, for example, a method described in Protein Structural Analysis for Gene Cloning (Hisashi Hirano, published by Tokyo Kagaku Dojin, 1993). be able to.
- a polyclonal antibody can be prepared by using a purified full-length or partial fragment of the protein of the present invention obtained by the method described in the above [2] as an antigen and administering it to an animal.
- mice As animals to be administered, egrets, goats, rats, mice, hamsters, etc., which are 3 to 20 weeks old can be used.
- the dose of the antigen is preferably 50 to 100 g per animal.
- a peptide When a peptide is used, it is preferable to use, as the antigen, a peptide covalently bonded to a carrier protein such as keyhole limp et haemocyanin or bovine thyroglobulin.
- the peptide serving as the antigen can be synthesized by a peptide synthesizer.
- the administration of the antigen is performed 3 to 10 times every 1 to 2 weeks after the first administration. Blood is collected from the fundus venous plexus 3 to 7 days after each administration, and the serum reacts with the antigen used for immunization. Five
- a polyclonal antibody can be obtained by obtaining serum from a non-human mammal whose serum shows a sufficient antibody titer against the antigen used for immunization, and separating and purifying the serum.
- Methods for separation and purification include centrifugation, salting out with 40-50% saturated ammonium sulfate, and prillic acid precipitation [Antibodies, A Laboratory Manual, Cold Spring Harbor Laboratory, (1988)], or DEAE-cephalo.
- a single column, an anion exchange column, a chromatography using a protein A or G-column or a gel filtration column, etc., may be used alone or in combination.
- a rat whose serum shows a sufficient antibody titer against the antigen used for immunization is used as a source of antibody-producing cells.
- the spleen is removed.
- the spleen is shredded in MEM medium (Nissui Pharmaceutical), loosened with tweezers, centrifuged at 1,200 rpm for 5 minutes, and the supernatant is discarded.
- the spleen cells in the precipitate fraction thus obtained are treated with Tris-ammonium chloride buffer (PH7.65) for 1 to 2 minutes to remove red blood cells, and then washed three times with MEM medium. Is used as an antibody-producing cell.
- myeloma cells cell lines obtained from mice or rats are used.
- 8-azaguanine-resistant mouse derived from BALB / c
- P3-X63Ag8-U1 P 3-Ul
- SP2 / 0-Agl4 SP2 / 0-Agl4
- SP-2 SP2 / 0-Agl4
- P3-X63-Ag8653 6
- J. Immunol. 123, 1548 (1979)
- P3-X63-Ag8 (X63) [Nature, 256, 495 (1975)]
- 8-azaguanine medium [RPMI-1640 medium containing glutamine (1.5 mM), 2-mercaptoethanol (5 ⁇ 10 " 5 M), genyumycin (10 ⁇ g / ml) and fetal calf A medium containing serum (FCS) (CSL, 10%) (hereinafter referred to as a normal medium) and a medium supplemented with 8-azaguanine (15 ⁇ g
- the suspension was dispensed into a 96-well culture plate at 100 ° C./well, and the suspension was placed at 37 ° C. in a 5% CO 2 incubator. Incubate for ⁇ 14 days.
- a purified sample of the full-length or partial fragment of the protein of the present invention used as the antigen was coated on an appropriate plate, and the hybridoma culture supernatant or the purified antibody obtained in (2-4) described later was purified.
- an anti-rat immunoglobulin antibody labeled with a biotin, an enzyme, a chemiluminescent substance, a radioactive compound, or the like was carried out.
- a reaction corresponding to the labeling substance is carried out.
- Those that react specifically are selected as hybridomas that produce monoclonal antibodies against the protein of the present invention.
- hybridoma Using the hybridoma, cloning was repeated twice by the limiting dilution method [the first time using HT medium (medium from which aminopterin was removed from HAT medium), and the second time using normal medium]. Those with a strong antibody titer are selected as hybridoma strains producing a monoclonal antibody against the protein of the present invention.
- Ascites is collected from the mouse with ascites tumor and centrifuged at 3,000 rpm for 5 minutes to remove solids.
- a monoclonal antibody can be purified and obtained in the same manner as in the polyclonal method.
- the antibody subclass is determined using a mouse monoclonal antibody typing kit or a rat monoclonal antibody typing kit.
- the protein content is calculated by the Lowry method or the absorbance at 280 nm.
- the ubiquitin ligase activity is determined by reacting a target protein with a ubiquitin protein labeled with a fluorescent label, a biotin label, or an isotope in the presence of the protein of the present invention in a cell or in a test tube, and the ubiquitin protein incorporated into the target protein. Can be determined by measuring the amount of It can also be determined by detecting the incorporated ubiquitin protein using an anti-ubiquitin antibody [Science, 373 (5), 81-83 (1995), FEBS Letters, 377, 193-196 ( 1995), Science, 269, 682-685 (1995)].
- the proteolysis-promoting activity is determined by reacting a fluorescent-labeled, biotin-labeled, or isotopically-labeled target protein in a cell or a test tube in the presence of the protein of the present invention, and measuring the amount of change in the target protein. Can be obtained by The amount of change in the target protein can also be detected using a specific antibody for the target protein. When a fusion protein is used as the target protein, specificity for the fused protein Detection can also be performed using an antibody. It can also be determined by immunologically detecting ubiquitin incorporated into the target protein using an anti-ubiquitin antibody [Genes & Development, 12, 2587-2597 (1998), Molecular Cell, 1, 565]. -574 (1998), Genes & Development, 11, 3046-3060 (1998), Genes & Development, U, 1548-1560 (1997)].
- a test sample is added to the protein of the present invention or a tissue, cell, or the like in which the expression of the protein of the present invention has been confirmed by the method of [7] described below, and a test sample is added thereto.
- Ubiquitin ligase activity or proteolysis promoting activity is measured.
- a compound that varies the ubiquitin ligase activity or the proteolysis-promoting activity from the test sample is determined. Can be screened.
- a compound that enhances the activity is also referred to as an agonist
- a compound that inhibits the activity is also referred to as an antagonist.
- a compound that changes ubiquitin ligase activity or proteolysis-promoting activity can be screened by the following method.
- Cells and tissues expressing the protein of the present invention, cell membranes prepared therefrom, purified protein of the present invention or a partial fragment of the protein are contacted with a labeling compound, and the protein of the present invention binds to the labeling compound.
- test sample is added under the same conditions as above using a labeled compound that has been observed to bind, and the amount of binding of the labeled compound is measured in the same manner as above.
- Test samples include synthetic compounds, naturally occurring proteins, artificially synthesized proteins, peptides, carbohydrates, lipids, modified forms and derivatives thereof, and mammals (eg, mice, rats, guinea pigs, hamsters, Urine, body fluids, tissue extracts, cell culture supernatants, cell extracts, and other non-peptide compounds, fermentation products And extracts of plants and other organisms.
- synthetic compounds naturally occurring proteins, artificially synthesized proteins, peptides, carbohydrates, lipids, modified forms and derivatives thereof, and mammals (eg, mice, rats, guinea pigs, hamsters, Urine, body fluids, tissue extracts, cell culture supernatants, cell extracts, and other non-peptide compounds, fermentation products And extracts of plants and other organisms.
- the agonist or angonist of the protein of the present invention obtained by the above method can be used alone as a prophylactic or therapeutic agent (also referred to as a drug), but usually it is used in pharmacology. It is admixed with one or more commercially acceptable carriers and used as a pharmaceutical preparation produced by any method well known in the pharmaceutical art.
- the method of administering the therapeutic agent is desirably the most effective method for the treatment, and is orally or parenterally, such as oral, respiratory, rectal, subcutaneous, intramuscular, and intravenous. Can be used.
- Examples of the dosage form of the therapeutic agent include ointments, sprays, capsules, tablets, granules, syrups, emulsions, suppositories, injections, tapes and the like.
- Formulations suitable for oral administration include emulsions, syrups, capsules, tablets, powders, granules and the like.
- Liquid preparations such as emulsions and syrups are prepared from water, sugars such as sucrose, sorbitol, fructose, glycols such as polyethylene glycol, propylene glycol, and oils such as sesame oil, olive oil and soybean oil. And preservatives such as P-hydroxybenzoic acid esters, and flavors such as strawberry flavor and peppermint as additives.
- Capsules, tablets, powders, granules, etc. are excipients such as lactose, glucose, sucrose, mannitol, disintegrants such as starch, sodium alginate, lubricants such as magnesium stearate, talc, polyvinyl alcohol , Hydroxyprobi It can be produced using additives such as binders such as cellulose and gelatin, surfactants such as fatty acid esters, and plasticizers such as glycerin as additives.
- Formulations suitable for parenteral administration include injections, suppositories, sprays and the like.
- the injection can be prepared, for example, using a carrier comprising a salt solution, a glucose solution, or a mixture of both.
- Suppositories can be prepared using a carrier such as cocoa butter, hydrogenated fat or carboxylic acid.
- the agonist or angonist obtained above can be directly used as a propellant, but it does not irritate the oral cavity and airway mucosa of the recipient and disperses the compound as fine particles. Sprays prepared using a carrier or the like that facilitates absorption are preferred.
- the carrier include lactose and glycerin.
- Formulations such as aerosols and dry powders can be prepared depending on the properties of the agonist or angonist obtained above and the carrier.
- the dose or frequency of administration varies depending on the desired therapeutic effect, administration method, treatment period, age, body weight, etc., but is usually 10 mg / kg to 8 mg / kg per day for an adult.
- an expression regulating compound present in the cell and in a cell culture supernatant can be searched and identified.
- the cell may be a cell, cell line or tissue expressing the protein of the present invention. Can be used.
- a cell, a cell line, or a tissue in which the expression of the protein has been observed can be used by the method of immunologically detecting with the antibody described in [7] below.
- Suitable cell lines include, for example, human epidermoid carcinoma-derived A431 cells (ATCC: CRL-1555).
- test sample those mentioned in the test sample in the above [5] can be used.
- Cells expressing the protein of the present invention are suspended in a medium capable of growing the cells, a test sample is added to the medium, and the cells are contacted with the cells.
- a test sample is added to the medium, and the cells are contacted with the cells.
- the expressed protein is quantified.
- a method for quantification for example, a method using the following immune cell staining can be mentioned.
- the adherent cells in the culture were washed with PBS buffer, and 3 ml of PBS buffer containing 0.05% trypsin and 0.02% EDTA (ethylenediamine tetraacetic acid) was added. After removing excess solution, 37 ° C, Remove cells from flask by incubating for 5 minutes.
- PBS buffer containing 0.05% trypsin and 0.02% EDTA (ethylenediamine tetraacetic acid) was added. After removing excess solution, 37 ° C, Remove cells from flask by incubating for 5 minutes.
- Cultured cells can be used as they are for suspension cells.
- Cells immune cell staining buffer to perform immunocytochemistry were suspended in such (1% BSA, 0. 02% EDTA, PB S containing 0.05% sodium azide), 1 ⁇ 20 X 10 5 cells each round Dispense into the bottom 96-well plate.
- the monoclonal antibody of the present invention is dispensed on the plate.
- Examples of the monoclonal antibody include the culture supernatant of a hybridoma producing the monoclonal antibody of the present invention obtained in [3] (2-3), and the purified monoclonal antibody obtained in [3] (2-4). I can give it. Furthermore, an antibody labeled with the monoclonal antibody can also be used.
- an antibody labeled with a monoclonal antibody is a biotin-labeled antibody.
- a biotin-labeled antibody can be prepared by a known method (enzyme antibody method: interdisciplinary project, 1985).
- the above antibody is diluted to a concentration of 0.1 to 50 ⁇ g / ml using an immune cell staining buffer or an immune cell staining buffer containing 10% animal serum.
- the diluted antibody is dispensed at 20-500 ⁇ 1 / well and left under ice-cooling for 30 minutes.
- an unlabeled antibody If an unlabeled antibody is used, add an immunocell staining buffer to the plate, wash the cells, and label the anti-mouse with a fluorescent dye such as FITC (fluorescein isothiocyanate) or phycoerythrin. Dispense 50-500 / 1 / well of immunoglobulin antibody or anti-rat immunoglobulin antibody at a concentration of about 0.1 to 5 ⁇ g / ml in an amount of about 50 to 500/1 / well. Leave for 5 minutes in the shade.
- FITC fluorescein isothiocyanate
- a fluorescent dye such as FITC or phycoerythrin
- An expression-regulating compound can be identified by searching for a test sample capable of increasing or decreasing the protein content of the present invention, as compared with a system to which no test sample is added.
- Cells expressing the protein of the present invention or mRNA encoding the protein are suspended in a medium capable of growing the cells, a test sample is added to the medium, and the cells are contacted.
- the content of the expressed mRNA was determined by the usual Northern hybridization method: dot blot hybridization of RNA. Method, RT-PCR, etc.
- the DNA and the oligonucleotide of the present invention are preferably used as a probe used in the hybridization method and the like, and the oligonucleotide of the present invention is suitably used as a primer that can be used in the RT-PCR method and the like.
- An expression-regulating compound can be identified by searching for a test sample capable of increasing or decreasing the content of mRNA encoding the protein of the present invention, as compared to a system to which no test sample is added.
- the content of the mRNA is quantified to vary the expression of the gene encoding the protein of the present invention.
- Compounds can be searched and identified.
- the above-mentioned [6] (1) can be used as a cell or a test sample which expresses the protein of the present invention or the protein mRNA.
- Transformation transformed with a plasmid containing DNA linked to a repo overnight gene downstream of a promoter DNA (hereinafter simply referred to as a promoter DNA) that controls transcription of a gene encoding the protein of the present invention.
- a promoter DNA a promoter DNA that controls transcription of a gene encoding the protein of the present invention.
- Promoter DNA is usually contained 5 'upstream of the gene.
- the promoter DNA of the gene encoding the protein of the present invention can be prepared using the DNA or the oligonucleotide of the present invention by a known method such as Genome Walker kits (Clontech).
- a fragment obtained by cutting this region to an appropriate length using an appropriate restriction enzyme can be used as a transcription control region.
- any gene can be used as long as the translation product of the gene is stable in cells and the amount of the translation product can be easily quantified. Examples thereof include chloramphenicylacetyltransferase (CAT), galactosidase (5-ga1), luciferase (luc), and green fluorescent protein (GFP).
- CAT chloramphenicylacetyltransferase
- 5-ga1 galactosidase
- luc luciferase
- GFP green fluorescent protein
- any cell can be used.
- the expression of the protein of the present invention or the protein mRNA described in [6] (1) is preferred. Recognized cell lines can be used.
- test sample those mentioned in the test sample in the above [5] can be used.
- the repo overnight gene is ligated to the downstream of the transcription control region by an ordinary method, and the prepared cells are used to transform host cells by an ordinary method.
- a gene targeting vector by linking a marker for positive selection (such as the G418 resistance gene) and a marker for negative selection (such as the gene for thymidine kinase and zediphteria toxin A fragment of simple virus virus).
- a marker for positive selection such as the G418 resistance gene
- a marker for negative selection such as the gene for thymidine kinase and zediphteria toxin A fragment of simple virus virus.
- the transformant is suspended, for example, in a medium in which the cells can grow, a test sample is added to the medium, and the cells are brought into contact with each other, and then the protein encoded by the reporter gene expressed in the cells is removed.
- the amount is detected or quantified by a method appropriate for the protein.
- the DNA of the present invention is obtained by using the DNA or the oligonucleotide of the present invention as a probe and extracting RNA from human tissue ⁇ human-derived cells in the same manner as in [1] (1) using Northern. By performing the hybridization, mRNA of the protein gene of the present invention in the tissue or cell can be detected or quantified. By comparing the mRNA expression levels in various tissues, the tissue expression distribution of the protein of the present invention can be known.
- the oligonucleotide of the present invention was used as a specific primer for the DNA of the present invention to detect RNA extracted from human tissue ⁇ human-derived cells in the same manner as in [1] (1).
- PCR reverse transcription PCR; PCR Protocols (1990)]
- the method for quantifying the mRNA can be used for diagnosis of pathological conditions involving the present gene, prediction of the effects of cytotoxic nucleoside derivatives (antitumor agents, antiviral agents), and the like.
- the importance of the gene product in the disease condition can be clarified. Further, the drug can be evaluated by comparing the expression amount of the mRNA depending on the presence or absence of the drug.
- the DNA or oligonucleotide of the present invention is used as a probe
- finer expression distribution such as identification of cells expressing the protein of the present invention in tissues can be achieved. You can know.
- the oligonucleotide of the present invention can be used as a specific primer for the DNA of the present invention to perform PCR reaction on genomic DNA of human tissue / human-derived cells. Mutations, deletions, amplifications, and polymorphisms in the gene encoding the protein can be detected.
- Detection of mutations, deletions, amplifications, and polymorphisms may result in mutations, deletions, amplifications, and polymorphisms in the gene, which may be a cause or risk factor, such as malignant tumors and neurodegenerative diseases It is possible to diagnose diseases caused by increased or decreased protein degradation, such as autoimmune diseases and inflammatory diseases.
- RNA / DNA antisense 'oligonucleotide (RNA / DNA) of the present invention to suppress the transcription of the gene encoding the protein of the present invention or the translation of mRNA, [Chemistry, 46, 681 (1991), Bio / Technology, 9, 358 (1992)], where the gene may be involved in the pathogenesis, such as malignant tumors, neurodegenerative diseases, autoimmune diseases, inflammatory diseases, etc. It can be used for prevention and treatment of diseases caused by.
- the antisense 'oligonucleotide described above encodes a protein of the present invention.
- the medicament containing the DNA of the present invention can be prepared by the same method as the above-mentioned [5] for preparing the pharmaceutical preparation of the agonist or angonist of the protein of the present invention.
- the prepared pharmaceutical preparation can be administered in the same manner as in the above [5].
- the medicine containing the protein of the present invention can be prepared and prepared by using the same method as the above-mentioned [5] for preparing the pharmaceutical preparation of the agonist or angonisto of the protein of the present invention.
- the pharmaceutical preparation can be administered in the same manner as in the above [5].
- the drug containing the antibody of the present invention can be prepared by the same method as the above-mentioned [5], which is the same as the method for preparing the agonist of the protein of the present invention or the pharmaceutical preparation of an gonist, and the prepared drug is used.
- the preparation can be administered in the same manner as in [5] above.
- the DNA or oligonucleotide of the present invention may be incorporated as a single-stranded or double-stranded DNA vector such as retrovirus, adenovirus, adeno-associated virus, and other vectors into a vector for gene therapy to produce a gene therapy vector. Can be used for treatment.
- the protein of the present invention can be immunologically detected or quantified using an antibody against the protein of the present invention.
- Specific examples include the ELISA method using a micro-tie plate, immunohistochemical staining using an enzyme-labeled antibody method or a fluorescent antibody method, and a detection method using a Western blot method.
- the epitope is different among the antibodies that react with the protein of the present invention in the liquid phase.
- Two monoclonal antibodies Sanditsuchi EL I SA method using, be given such radioimmunoprecipitation Adzu Si method are use antibodies that recognize proteins and protein of the present invention of the present invention labeled with a radioisotope such as 125 1 comprising Can be.
- the antibody of the present invention can also be used for immunohistological staining using a pathological tissue section.
- the protein of the present invention present in cells or tissues of healthy subjects and subjects is immunologically detected or quantified, and the amount is compared between healthy subjects and subjects.
- the antibody of the present invention can be used as a diagnostic agent for a disease state of a subject caused by an increase or decrease in protein degradation such as a malignant tumor, a neurodegenerative disease, an autoimmune disease, an inflammatory disease and the like.
- the antibody of the present invention can be used as an immunohistochemical stain.
- FIG. 1 is a diagram simply showing the structure of plasmid phMD6.
- Figure 2 shows the amino acid sequence of the protein encoded by the plasmid phMD6, and the known F-WD proteins mouse MD6 (mMD6), human — TRCP (hbTRCP), Saccharomyces' Celepiche CDC4 (scCDC4), It is a figure which compared the amino acid sequence of Shizosaccharomyces. Bomb pop 1+ (sppopl). An asterisk indicates an amino acid residue that is identical in all sequences (amino acid residues are indicated by one letter). Above the sequence, the positions of the F box (denoted as F-box) and the WD domain (denoted as WD-1 to WD-7) are shown.
- mMD6 mouse MD6
- hbTRCP human — TRCP
- scCDC4 Saccharomyces' Celepiche CDC4
- Figure 3 shows the amino acid sequence of the protein encoded by the plasmid phMD6, and the known F-WD proteins mouse MD6 (mMD6), human ⁇ TRCP (hbTRCP), and Saccharomyces' Celepiche CDC4 (scCDC4 ) And a comparison of the amino acid sequences of Schizosaccharomyces ′ s bomb pop 1+ (sppopl) (continuation of FIG. 2).
- FIG. 4 shows primers corresponding to the sequence contained in hMD6 (SEQ ID NO: 5), using RNAs from four human cancer cell lines (Jurkat, HeLa, A431, Saos-2) as type III.
- FIG. 9 shows the results of RT-PCR experiments performed using the 5′-end DNA primer used and the 3′-end DNA primer shown in SEQ ID NO: 4.
- the genetic engineering method was performed by the method described in the known Molecular Cloning 2nd edition.
- SEQ ID NOS: 3 and 5 from human EST sequence (Genbank, ACCESSION AA252 600, AA452542) having homology to Schizosaccharomyces bombi pop 1+ gene [Genes & Development, 11, 1548-1560 (1997)]
- a 5′-end DNA primer consisting of a base sequence to be used was designed and chemically synthesized.
- a 3′-end DNA primer consisting of the nucleotide sequence shown in SEQ ID NO: 4 was designed and chemically synthesized. Chemical synthesis of DNA was carried out by a conventional solid phase synthesis method using a DNA synthesizer Model 392 manufactured by Applied Biosystems.
- Total RNA was prepared from human epidermoid carcinoma-derived cell line A431 (ATCC CRL-1555) using a Total RNA Separator Kit (Clontech) according to the attached protocol. From 5 ⁇ g of total RNA, SuperscriptTM Preamplification System (GIBC0 BRL Using the oligo (dT) primer according to the attached protocol to prepare cDNA.
- GIBC0 BRL SuperscriptTM Preamplification System
- the reaction solution (21 ⁇ 1) was diluted 50-fold, and a PCR reaction was performed using 101 of the diluted solution.
- primers the 5′-end DNA primer shown in SEQ ID NO: 3 and the 3 ′ end DNA primer shown in SEQ ID NO: 4, 10 ⁇ l of ⁇ type cDNA, each of the two types of primers were used. 25 ⁇ M, 400 ⁇ M each component dNTP (dATP, dGTP, dCTP, dTTP) mixture, 2.5 mM magnesium hydrochloride, TaKaRa LA Taq (Takara Shuzo) 2.5 units and 1 x La Taq buffer (PCR was performed under the following conditions using a reaction solution containing magnesium (free) 40 ⁇ 1.
- a DNA Thermal Cycler 480 Perkin Elmer Cetus
- a process consisting of 94 ° C for 30 seconds, 55 ° C for 60 seconds, and 72 ° C for 120 seconds is defined as one cycle. 25 cycles were performed and heating was further performed at 72 ° C for 7 minutes.
- the PCR solution thus obtained was collected in a 5 1-minute fraction and subjected to agarose electrophoresis. As a result, it was confirmed that an expected DNA fragment of about 1.5 kb was amplified. After confirmation, the PCR reaction solution was subjected to agarose electrophoresis, and the DNA fragment of about 1.5 kb was purified using a Gene Clean III Kit (BI0101) according to the attached protocol.
- the recombinant plasmid DNA obtained by the reaction was used to transform Escherichia coli DH5 strain (Molecular Cloning, 2nd ed., A.10), and the method described in Molecular cloning 2nd ed.
- plasmid phMD6 was obtained.
- the nucleotide sequence of the cloned DNA fragment hMD6 was determined as follows. Using phMD6 as type I, a sample for nucleotide sequence determination was prepared using Big Dye Primer Cycle Sequencing Kit (Applied Biosystems) according to the attached protocol, and ABI PRISif M 377 DNA sequencer (Applied Biosystems).
- PhMD6 contains the cDNA described in SEQ ID NO: 2, and has an open reading frame (hereinafter abbreviated as ORF) of 1362 base pairs.
- ORF open reading frame
- hMD6 a protein consisting of 454 amino acid residues shown in SEQ ID NO: 1 (hereinafter abbreviated as hMD6) was encoded.
- the F-box protein has a region consisting of amino acids of 40 to 50 residues called an F-box near the amino terminal of the protein.
- the F-WD protein is It has a sequence called the WD domain near the carboxy terminus, which usually has tributophan-aspartic acid (WD) as its last amino acid residue and from about 20 to 40 residues.
- the amino acid sequence has a structure having a sequence repeated 4 to 8 times.
- the amino acid sequence was compared with a known F-WD protein using an analysis program [Gap included in the Wisconsin Package (Genetics Computer Group, USA)]. Accession X54352) has a high homology with the protein (mMD 6), and shows 97% homology (Similarity) between hMD 6 and mMD 6. In addition, when the total length of the translation regions of the hMD6 gene and the mMD6 gene was compared using the above-mentioned analysis program, the nucleotide sequences showed 95% homology. Due to this extremely high homology, hMD6 is considered to be the ortholog of mMD6.
- JP 1 JP 1
- the F box is considered to correspond to the amino acid sequence consisting of 43 residues shown in SEQ ID NO: 6 (amino acid sequence at positions 59 to 101 in SEQ ID NO: 1).
- the WD domain has an amino acid sequence consisting of 29 residues represented by SEQ ID NO: 7 (WD-1: the amino acid sequence at positions 146 to 174 of SEQ ID NO: 1), an amino acid consisting of 27 residues represented by SEQ ID NO: 8 Sequence (WD-2: amino acid sequence at positions 186 to 212 of SEQ ID NO: 1), an amino acid sequence consisting of 31 residues represented by SEQ ID NO: 9 (WD-3: amino acid sequence at positions 224 to 254 of SEQ ID NO: 1) ), An amino acid sequence consisting of 30 residues represented by SEQ ID NO: 10 (WD-4: amino acid sequence at positions 266 to 295 of SEQ ID NO: 1); an amino acid sequence consisting of 29 residues represented by SEQ ID NO: 11 (WD- 5: Amino acid sequence consisting of 6 residues shown in SEQ ID NO: 12 (amino acid sequence at positions 307 to 335 of SEQ ID NO: 1) (WD-6: amino acid sequence of positions 346 to 351 in SEQ ID NO: 1), SEQ
- the F-box shows high homology (43% for human 5-TRCP, 35% for Schizosaccharomyces .bomb 1) and 47% for Saccharomyces' Celepiche CD C4.
- the WD domain showed high homology of 34% with human TRCP, 28% with Schizosaccharomyces 'bomb pop 1+, and 33% with Saccharomyces' Celepiche CDC4.
- FIGS. 2 and 3 show a comparison of the sequences of hMD6 and other F-WD proteins.
- the ORF encoded by the hMD6 gene was It is thought to encode a novel F-WD protein that is a submittal of zE3.
- RNA Human T-cell leukemia-derived cell line Jurkat (ATCC TIB-152), human uterine cancer-derived cell line HeLa (ATCC CCL-2), human epidermoid carcinoma-derived cell line A431 (ATCC CRL-1555), human osteosarcoma
- RNA was prepared from the derived cell line Saos-2 (ATCC HTB-85) using a Total RNA Separator Kit (Clontech) according to the attached protocol. From 5 g of each RNA, reverse transcription reaction was performed with oligo (dT) primer using Superscript TM Preamplification System (GIBC0 BRL) according to the attached protocol to prepare cDNA.
- the reaction solution (21 ⁇ 1) was diluted 50-fold, and a PCR reaction was performed using 101 of the diluted solution.
- primers a 5′-end DNA primer shown in SEQ ID NO: 5 and a 3′-end DNA primer shown in SEQ ID NO: 4 were used.
- Type II cDNA 10 ⁇ 1 each of the two primers 0.5 ⁇ M each, each component 400 ⁇ M dNTP (dATP, dGTP, dCTP, dTTP) mixture, 2.5 mM magnesium chloride, TaKaRa LA Taq (PCR was performed under the following conditions using a reaction solution 201 containing 2.5 units and 1 ⁇ La Taq buffer (magnesium-free).
- FIG. 4 shows the results obtained by collecting 10 ⁇ 1 of the obtained PCR solution and subjecting it to agarose electrophoresis. It was confirmed that in all of the four types of PCR solutions derived from human cancer cells, a DNA fragment having a size of about 1.5 kb predicted from the nucleotide sequence encoding hMD6 was amplified. From the above results, it was shown that cDNA encoding hMD6 was expressed in these four types of cancer cells.
- M579079 and AI066748 which are ESTs containing a part of the hMD6 gene, using the UniGene server of the American National Center for Biotechnology Information (NCBI), they were assembled to the Hs. 13755 UniGene clone.
- the clone contained SHGC-15152, an STS (Sequence-tagged site) already mapped on the human chromosome.
- the STS was located between markers D9S258 and D9S1821 on human chromosome 9. This position corresponds to the 31-32 region (9q31-32) of the long arm of chromosome 9.
- This area includes esophageal cancer, basal cell carcinoma, non-Hodgkin's lymphoma, (Japanese clinical,, 986-991 (1996), Cancer Res., 56, 1629-1634 (1996), Cancer Lett, 79, 67-72 (1994), Genes Chromosomes Cancer, 12, 32-36 (1995), etc., where deletions are seen, suggesting the presence of a tumor suppressor gene, and t (7; 9) It is also near the breakpoint of the chromosomal locus, as well as the genes responsible for Tangier disease (Tangier disease), which causes low HDL (high density lipoprotein), a risk factor for ischemic heart disease, and familial autonomic dysfunction.
- the causative gene has been mapped to this region [Nature Genetics, 4, 160-
- the present invention provides a novel F-WD protein, a DNA encoding the protein, a recombinant vector containing the DNA, and a transformant containing the recombinant vector.
- a protein obtained by the present invention, a DNA encoding the protein, an antibody recognizing the protein, the protein, and an oligonucleotide comprising a partial sequence of the DNA may be a neurodegenerative disease, a malignant tumor, an autoimmune disease, an inflammatory disease, It is effectively used for the prevention, treatment, diagnosis, etc. of diseases caused by enhanced or reduced protein degradation such as viral diseases.
- SEQ ID NO: 3 Description of Artificial Sequence: Synthetic DNA
- SEQ ID NO: 4 Description of Artificial Sequence: Synthetic DNA
- SEQ ID NO: 5 Description of Artificial Sequence: Synthetic DNA
Abstract
Description
Claims
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AU18019/00A AU1801900A (en) | 1998-12-28 | 1999-12-27 | Novel protein |
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JP10/373954 | 1998-12-28 | ||
JP37395498 | 1998-12-28 |
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Citations (2)
Publication number | Priority date | Publication date | Assignee | Title |
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WO1995021252A2 (en) * | 1994-02-01 | 1995-08-10 | The Board Of Trustees Of The Leland Stanford Junior University | Wd-40-derived peptides and uses thereof |
WO1999018989A1 (en) * | 1997-10-16 | 1999-04-22 | Baylor College Of Medicine | F-box proteins and genes |
-
1999
- 1999-12-27 WO PCT/JP1999/007335 patent/WO2000040609A1/en active Application Filing
- 1999-12-27 AU AU18019/00A patent/AU1801900A/en not_active Abandoned
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WO1995021252A2 (en) * | 1994-02-01 | 1995-08-10 | The Board Of Trustees Of The Leland Stanford Junior University | Wd-40-derived peptides and uses thereof |
WO1999018989A1 (en) * | 1997-10-16 | 1999-04-22 | Baylor College Of Medicine | F-box proteins and genes |
Non-Patent Citations (6)
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