WO1999063983A1 - MULTIBINDING AGENTS THAT MODULATE PPARη AND RXR RECEPTORS - Google Patents
MULTIBINDING AGENTS THAT MODULATE PPARη AND RXR RECEPTORS Download PDFInfo
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- WO1999063983A1 WO1999063983A1 PCT/US1999/012669 US9912669W WO9963983A1 WO 1999063983 A1 WO1999063983 A1 WO 1999063983A1 US 9912669 W US9912669 W US 9912669W WO 9963983 A1 WO9963983 A1 WO 9963983A1
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- alkyl
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- 0 *c(cc1)ccc1C(c1ccc(*)cc1)=C Chemical compound *c(cc1)ccc1C(c1ccc(*)cc1)=C 0.000 description 5
- NAVMQTYZDKMPEU-UHFFFAOYSA-N CC(C)(CCC(C)(C)c1c2)c1cc(C)c2C(c(cc1)ccc1C(O)=O)=C Chemical compound CC(C)(CCC(C)(C)c1c2)c1cc(C)c2C(c(cc1)ccc1C(O)=O)=C NAVMQTYZDKMPEU-UHFFFAOYSA-N 0.000 description 1
- PXYOZRQDXZCRES-UHFFFAOYSA-N CC1(C)c(cc(cc2)C#Cc(nc3)ccc3C(OC)=O)c2SCC1 Chemical compound CC1(C)c(cc(cc2)C#Cc(nc3)ccc3C(OC)=O)c2SCC1 PXYOZRQDXZCRES-UHFFFAOYSA-N 0.000 description 1
- YLXFZHBFWCFYTA-UHFFFAOYSA-N COC(c(cc1)ccc1C(c(cc1)ccc1O)=C)=O Chemical compound COC(c(cc1)ccc1C(c(cc1)ccc1O)=C)=O YLXFZHBFWCFYTA-UHFFFAOYSA-N 0.000 description 1
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Definitions
- This invention relates to novel therapeutic agents which bind to mammalian receptors and modulate their activity. More particularly, the invention relates to novel therapeutic agents that bind to and modulate the in vivo activity of PPAR ⁇ and RXR receptors in mammals by acting as multi-binding compounds.
- the therapeutic agents or multi-binding compounds described herein comprise at least two ligands connected by a linker or linkers, wherein said ligands in their monovalent state bind to and/or are capable of modulating the activity of the PPAR ⁇ and RXR receptors.
- the linking moiety is chosen such that the multi- binding compounds so constructed demonstrate increased biological activity as compared to the same number of individual units of the ligand or ligands.
- the invention also relates to methods of using such compounds, to methods of preparing such compounds and to pharmaceutical compositions containing them.
- multi-binding compounds are particularly useful in treating mammalian conditions that are mediated by the PPAR ⁇ receptors targeted by the ligands, such as non-insulin dependent diabetes mellitus, cancer, including colon carcinomas and lipocarcinomas, hyperlipidemia, atherosclerosis and inflammatory diseases such as rheumatoid arthritis and inflammatory bowel disease.
- this invention also relates to pharmaceutical compositions comprising a pharmaceutically acceptable excipient and an effective amount of a multi-binding compound of this invention.
- a receptor is a biological structure with one or more binding domains that reversibly complexes with one or more ligands, where that complexation has biological consequences.
- Receptors can exist entirely outside the cell (extracellular receptors), within the cell membrane (but presenting sections of the receptor to the extracellular milieu and cytosol), or entirely within the cell (intracellular receptors). They may also function independently of a cell (e.g., clot formation). Receptors within the cell membrane allow a cell to communicate with the space outside of its boundaries (i.e., signaling) as well as to function in the transport of molecules and ions into and out of the cell.
- a ligand is a binding partner for a specific receptor or family of receptors.
- a ligand may be the endogenous ligand for the receptor or alternatively may be a synthetic ligand for the receptor such as a drug, a drug candidate or a pharmacological tool.
- the ligands that bind to cellular receptors may be specifically classified as follows: 1. Full agonists - ligands that when bound trigger the maximum activity seen by natural ligands;
- Antagonist- ligands that when bound inhibit or prevent the activity arising from a natural ligand binding to the receptor.
- Antagonists may be of the surmountable class (results in the parallel displacement of the dose-response curve of the agonist to the right in a dose dependent fashion without reducing the maximal response for the agonist) or insurmountable class (results in depression of the maximal response for a given agonist with or without the parallel shift); 4.
- Inverse antagonist-ligands that when bound decrease the basal activity of the unbound receptor (if any).
- an activating ligand or agonist
- an inhibiting ligand has affinity for the receptor but no efficacy.
- Selectivity defines the ratios of affinities or the ratios of efficacies of a given ligand compared across two receptors. It is the selectivity of a specific drug that provides the required biological profile.
- ligands targeting PPAR ⁇ receptors have clinical shortcomings identified by one or more of low efficacy, low affinity, poor safety profile, lack of selectivity or overselectivity for the intended receptor, and suboptimal duration of action and onset of action. Accordingly, it would be beneficial to develop ligands that have improved affinity, efficacy, selectivity, onset of action and duration of action.
- An increase in ligand affinity to the target receptor may contribute to reducing the dose of ligand required to induce the desired therapeutic effect.
- a reduction in ligand affinity will remove activity and may contribute to the selectivity profile for a ligand.
- An increased ligand efficacy at a target receptor can lead to a reduction in the dose required to mediate the desired therapeutic effect.
- This increase in efficacy may arise from an improved positive functional response of the ligand or a change from a partial to full agonist profile.
- Reduced efficacy of a full agonist to a partial agonist may provide clinical benefit by modulating the biological response.
- Duration of Action An increased duration of action of the ligand to effect a biological response may be preferred.
- ⁇ 2 adrenergic agonists such as albuterol have a relatively short duration of action of approximately 3-4 hours and an increase in duration of action would simplify the dosing regimen required to administer this drug (ligand).
- the nuclear receptor superfamily comprises a number of ligand-activated transcription factors which control a wide range of biological processes involving gene expression such as differentiation, development and homeostasis.
- This superfamily of receptors includes the estrogen (ER), thyroid(TR), progesterone (PR) and retinoid receptors (RXR, RAR), in addition to the peroxisome proliferator-activated receptors (PPAR ⁇ , PPAR ⁇ , and PPAR ⁇ ).
- ER estrogen
- TR progesterone
- RXR, RAR retinoid receptors
- PPAR ⁇ , PPAR ⁇ , and PPAR ⁇ peroxisome proliferator-activated receptors
- These receptors possess the common structural motifs of an amino-terminal ligand independent transactivation domain, a central DNA binding domain, and a carboxy-terminal ligand-binding domain (LBD).
- LBD carboxy-terminal ligand-binding domain
- the central DNA binding domain recognizes a specific sequence of DNA,
- Activation of these receptors is associated with the binding of specific small molecule ligands to the LBD site, which then correlates with the association of the DNA binding domain with an HRE site on DNA, leading to transcriptional events.
- This class of receptors functions as a homo- or hetero-dimeric complex.
- PPAR ⁇ peroxisome proliferator-activated receptor gamma
- RXR retinoid X receptor
- Activation of the PPAR ⁇ -RXR heterodimer by PPAR ⁇ -specific or RXR-specific ligands in preadipocytes promotes gene transcription and differentiation to adipocytes.
- either ligand can activate the heterodimeric receptor complex.
- Administration of PPAR ⁇ ligands or RXR ligands to mammals with hyperglycemia, hyperinsulinemia, or hypertriglyceridemia leads to a reduction of blood glucose, serum triglycerides and serum non-esterified fatty acids, in addition to the differentiation of adipocytes.
- a PPAR ⁇ ligand and an RXR ligand to cells over-expressing the PPAR ⁇ -RXR heterodimer is synergistic in activating gene transcription.
- the coadministration of a PPAR ⁇ ligand and an RXR ligand to a hyperglycemic mammal leads to an enhancement of the glucose- and lipid-lowering effects compared to administration of either ligand alone. See Nature Vol 386 (1197) 407-410 and Mol. and Cell Biol. Vol 18 (1998) 3483-3494.
- novel ligands having desired potency and therapeutic effect for the PPAR ⁇ receptor would be particularly desirable in order to further increase insulin sensitivity, especially in the case of non- insulin dependent diabetes mellitus (NIDDM) in mammalian patients.
- Such novel ligands would preferably achieve the desired potency and therapeutic effect by modulating one or more of the ligand 's properties as to efficacy, affinity, safety profile, selectivity, duration of action and/or onset of action. This may have advantages in the effects on other disease states as well, such as certain types of cancer, hyperlipidemia, atherosclerosis and inflammatory diseases.
- This invention is directed to general synthetic methods for generating large libraries of diverse multimeric compounds which multimeric compounds are candidates for possessing multibinding properties.
- the diverse multimeric compound libraries provided by this invention are synthesized by combining a linker or linkers with a ligand or ligands to provide for a library of multimeric compounds wherein the linker and ligand each have complementary functional groups permitting covalent linkage.
- the library of linkers is preferably selected to have diverse properties such as valency, linker length, linker geometry and rigidity, hydrophilicity or hydrophobicity, amphiphilicity, acidity, basicity and polarization.
- the library of ligands is preferably selected to have diverse attachment points on the same ligand, different functional groups at the same site of otherwise the same ligand, and the like.
- This invention is also directed to libraries of diverse multimeric compounds which multimeric compounds are candidates for possessing multibinding properties. These libraries are prepared via the methods described above and permit the rapid and efficient evaluation of what molecular constraints impart multibinding properties to a ligand or a class of ligands targeting a receptor.
- this invention is directed to a multi-binding compound and salts thereof comprising 2 to 10 ligands, which may be the same or different and which are covalently attached to a linker or linkers which may be the same of different, at least one of said ligands comprising a ligand domain capable of binding to a PPAR ⁇ receptor, and a second ligand being capable of binding to an RXR receptor.
- at least two and more preferably each of the ligands comprises a ligand domain capable of binding to one or more of a PPAR ⁇ receptor or a RXR receptor.
- the multi-binding compounds of this invention are preferably represented by formula I:
- each L is independently selected from ligands comprising a ligand domain capable of binding to one or more of a PPAR ⁇ receptor or a RXR receptor;
- X is independently a linker;
- p is an integer of from 2 to 10;
- q is an integer of from 1 to 20; and pharmaceutically acceptable salts thereof, with the proviso that where one ligand binds to an RXR receptor, at least one other ligand binds to a PPAR ⁇ receptor.
- q is less than p.
- this invention is directed to a pharmaceutical composition
- a pharmaceutical composition comprising a pharmaceutically acceptable excipient and an effective amount of a multi-binding compound, or a pharmaceutically acceptable salt thereof, comprising 2 to 10 ligands which may be the same or different and which are covalently attached to a linker or linkers which may be the same or different, at least one of said ligands comprising a ligand domain capable of binding to one or more of a PPAR ⁇ receptor or a RXR receptor, with the proviso that where one ligand binds to an RXR receptor, at least one other ligand binds to a PPAR ⁇ receptor.
- said ligands comprising a ligand domain capable of binding to one or more of a PPAR ⁇ receptor or RXR receptor modulate insulin sensitivity in mammals. More preferably, said ligands are selected from the group selected from Formulas A-K and II-IV presented herein. In all embodiments, at least one ligand is a PPAR ⁇ ligand.
- this invention is directed to a pharmaceutical composition comprising a pharmaceutically acceptable excipient and an effective amount of a multi-binding compound represented by formula I:
- each L is independently selected from ligands comprising a ligand domain capable of binding to a PPAR ⁇ receptor or RXR receptor;
- X is a linker;
- p is an integer of from 2 to 10;
- q is an integer of from 1 to 20; and pharmaceutically acceptable salts thereof, with the proviso that where one ligand binds to an RXR receptor, at least one other ligand binds to a PPAR ⁇ receptor.
- q is less than/?, and more preferably the ligand is selected from the group represented by Formulas A-K and II-IV herein.
- this invention is directed to a method for increasing insulin sensitivity in a mammal mediated by one or more of PPAR ⁇ and RXR receptors, which method comprises administering to said mammal an effective amount of a pharmaceutical composition comprising a pharmaceutically acceptable excipient and a multi-binding compound, or a pharmaceutically acceptable salt thereof, comprising 2 to 10 ligands which may be the same or different and which are covalently attached to a linker or linkers which may be the same or different, at least two of said ligands comprising a ligand domain capable of binding to one or more of PPAR ⁇ and RXR receptors, with the proviso that at least one ligand is a PPAR ⁇ ligand.
- this invention is directed to a method for treating diseases including NIDDM, cancer, hyperlipidimia, atherosclerosis and inflammatory diseases, especially NIDDM, in a mammal mediated by PPAR ⁇ receptors which method comprises administering to said mammal an effective amount of a pharmaceutical composition comprising a pharmaceutically acceptable excipient and a multi-binding compound represented by formula I:
- each L is independently selected from ligands comprising a ligand domain capable of binding to at least one of a PPAR ⁇ or RXR receptor mediating insulin sensitivity;
- X is a linker;
- p is an integer of from 2 to 10;
- q is an integer of from 1 to 20 and pharmaceutically acceptable salts thereof, wherein at least one ligand must bind to the PPAR ⁇ receptor.
- q is less than/7, and more preferably, the ligand is selected from the group consisting of PPAR ⁇ and RXR ligands as set forth in Formulas A- K and II-IV herein.
- at least one of the ligands in said multi-binding compound is a corticosteroid.
- this invention is directed to a method for identifying multimeric ligand compounds possessing multibinding properties which method comprises:
- each linker in said library comprises at least two functional groups having complementary reactivity to at least one of the reactive functional groups of the ligand;
- this invention is directed to a method for identifying multimeric ligand compounds possessing multibinding properties which method comprises:
- each linker comprises at least two functional groups having complementary reactivity to at least one of the reactive functional groups of the ligand;
- the preparation of the multimeric ligand compound library is achieved by either the sequential or concurrent combination of the two or more stoichiometric equivalents of the ligands identified in (a) with the linkers identified in (b). Sequential addition is preferred when a mixture of different ligands is employed to ensure heterodimeric or multimeric compounds are prepared. Concurrent addition of the ligands is preferred when at least a portion of the multimeric compounds prepared are homomultimeric compounds.
- the assay protocols recited in (d) can be conducted on the multimeric ligand compound library produced in (c) above, or preferably, each member of the library is isolated by preparative liquid chromatography mass spectrometry (LCMS).
- LCMS preparative liquid chromatography mass spectrometry
- this invention is directed to a library of multimeric ligand compounds which may possess multivalent properties which library is prepared by the method comprising:
- each linker in said library comprises at least two functional groups having complementary reactivity to at least one of the reactive functional groups of the ligand;
- this invention is directed to a library of multimeric ligand compounds which may possess multivalent properties which library is prepared by the method comprising:
- each linker comprises at least two functional groups having complementary reactivity to at least one of the reactive functional groups of the ligand;
- the library of linkers employed in either the methods or the library aspects of this invention is selected from the group comprising flexible linkers, rigid linkers, hydrophobic linkers, hydrophilic linkers, linkers of different geometry, acidic linkers, basic linkers, linkers of different polarization and/or polarizability and amphiphilic linkers.
- each of the linkers in the linker library may comprise linkers of different chain length and/or having different complementrry reactive groups. Such linker lengths can preferably range from about 2 to lOOA.
- the ligand or mixture of ligands is selected to have reactive functionality at different sites on said ligands in order to provide for a range of orientations of said ligand on said multimeric ligand compounds.
- reactive functionality includes, by way of example, carboxylic acids, carboxylic acid halides, carboxyl esters, amines, halides, pseudohalides, isocyanates, vinyl unsaturation, ketones, aldehydes, thiols, alcohols, anhydrides, boronates and precursors thereof. It is understood, of course, that the reactive functionality on the ligand is selected to be complementary to at least one of the reactive groups on the linker so that a covalent linkage can be formed between the linker and the ligand.
- the multimeric ligand compound is homomeric (i.e., each of the ligands is the same PPAR ⁇ ligand, although it may be attached at different points) or heteromeric (i.e. , at least one of the ligands is different from the other ligands).
- this invention provides for an iterative process for rationally evaluating what molecular constraints impart multibinding properties to a class of multimeric compounds or ligands targeting a receptor.
- this method aspect is directed to a method for identifying multimeric ligand compounds possessing multibinding properties which method comprises:
- steps (e) and (f) optionally repeating steps (e) and (f) to further elaborate upon said molecular constraints.
- steps (e) and (f) are repeated at least two times, more preferably at least from 2-50 times, even more preferably from at least 3 to 50 times, and still more preferably at least 5-50 times.
- Ligand (drug) interactions with cellular receptors are controlled by molecular interaction/recognition between the ligand and the receptor. In turn, such interaction can result in modulation or disruption of the biological processes/functions of these receptors and, in some cases, leads to cell death. Accordingly, when cellular receptors mediate mammalian pathologic conditions, interactions of the ligand with the cellular receptor can be used to treat these conditions.
- mammalian PPAR ⁇ and RXR receptors which are known to affect insulin sensitivity, serum triglyceride levels and free fatty acids, as well as other important functions controlled by gene expression.
- this invention is directed, in part, to multi-binding compounds that bind PPAR ⁇ and RXR receptors.
- affinity and specificity of the PPAR ⁇ and RXR receptors and ligands thereto are dependent upon the complementarity of molecular binding surfaces and the energetic costs of complexation. "Affinity” is sometimes quantified by the equilibrium constant of complex formation. Specificity relates to the difference in affinity between the same ligand binding to different ligand binding sites on the cellular receptor.
- the multi-binding compounds of this invention are capable of acting as multi-binding agents and the surprising activity of these compounds arises at least in part from their ability to bind in a multivalent manner with mammalian PPAR ⁇ and optionally RXR receptors.
- Multivalent binding interactions are characterized . by the concurrent interaction of multiple ligands with multiple ligand binding sites on one or more PPAR ⁇ and optionally RXR receptors. Multivalent interactions differ from collections of individual monovalent interactions by imparting enhanced biological and/or therapeutic effect. Examples of multivalent binding interactions (e.g., trivalent) relative to monovalent binding interactions are shown below:
- multivalent binding can amplify binding affinities, it can also amplify differences in binding affinities, resulting in enhanced binding specificity as well as affinity.
- alkyl refers to a monoradical branched or unbranched saturated hydrocarbon chain preferably having from 1 to 40 carbon atoms, more preferably 1 to 10 carbon atoms, and even more preferably 1 to 6 carbon atoms. This term is exemplified by groups such as methyl, ethyl, n-propyl, w ⁇ -propyl, n-butyl, iso- butyl, n-hexyl, n-decyl, tetradecyl, and the like.
- substituted alkyl refers to an alkyl group as defined above, having from 1 to 5 substituents, and preferably 1 to 3 substituents, selected from the group consisting of alkoxy, substituted alkoxy, cycloalkyl, substituted cycloalkyl, cycloalkenyl, substituted cycloalkenyl, acyl, acylamino, acyloxy, amino, substituted amino, aminoacyl, aminoacyloxy, oxyaminoacyl, azido, cyano, halogen, hydroxyl, keto, thioketo, carboxyl, carboxylalkyl, thioaryloxy, thioheteroaryloxy, thioheterocyclooxy, thiol, thioalkoxy, substituted thioalkoxy, aryl, aryloxy, heteroaryl, heteroaryloxy, heterocyclic, heterocyclooxy, hydroxyamino, alkoxyamino,
- alkylene refers to a diradical of a branched or unbranched saturated hydrocarbon chain, preferably having from 1 to 40 carbon atoms, more preferably 1 to 10 carbon atoms and even more preferably 1 to 6 carbon atoms. This term is exemplified by groups such as methylene (-CH 2 -), ethylene (-CH 2 CH 2 -), the propylene isomers (e.g. , -CH 2 CH 2 CH 2 - and -CH(CH 3 )CH 2 -) and the like.
- substituted alkylene refers to an alkylene group, as defined above, having from 1 to 5 substituents, and preferably 1 to 3 substituents, selected from the group consisting of alkoxy, substituted alkoxy, cycloalkyl, substituted cycloalkyl, cycloalkenyl, substituted cycloalkenyl, acyl, acylamino, acyloxy, amino, substituted amino, aminoacyl, aminoacyloxy, oxyaminoacyl, azido, cyano, halogen, hydroxyl, keto, thioketo, carboxyl, carboxylalkyl, thioaryloxy, thioheteroaryloxy, thioheterocyclooxy, thiol, thioalkoxy, substituted thioalkoxy, aryl, aryloxy, heteroaryl, heteroaryloxy, heterocyclic, heterocyclooxy, hydroxyamino, alkoxyamino
- substituted alkylene groups include those where 2 substituents on the alkylene group are fused to form one or more cycloalkyl, substituted cycloalkyl, cycloalkenyl, substituted cycloalkenyl, aryl, heterocyclic or heteroaryl groups fused to the alkylene group.
- fused groups contain from 1 to 3 fused ring structures.
- alkaryl refers to the groups -alkylene-aryl and -substituted alkylene-aryl where alkylene, substituted alkylene and aryl are defined herein. Such alkaryl groups are exemplified by benzyl, phenethyl and the like.
- alkoxy refers to the groups alkyl-O-, alkenyl-O-, cycloalkyl-O- , cycloalkenyl-O-, and alkynyl-O-, where alkyl, alkenyl, cycloalkyl, cycloalkenyl, and alkynyl are as defined herein.
- Preferred alkoxy groups are alkyl-O- and include, by way of example, methoxy, ethoxy, n-propoxy, iso- propoxy, n-butoxy, tert-butoxy, sec-butoxy, n-pentoxy, n-hexoxy, 1,2- dimethylbutoxy, and the like.
- substituted alkoxy refers to the groups substituted alkyl-O-, substituted alkenyl-O-, substituted cycloalkyl-O-, substituted cycloalkenyl-O-, and substituted alkynyl-O- where substituted alkyl, substituted alkenyl, substituted cycloalkyl, substituted cycloalkenyl and substituted alkynyl are as defined herein.
- alkylalkoxy refers to the groups -alkylene-O-alkyl, -alkylene-O-substituted alkyl, -substituted alkylene-O-alkyl and -substituted alkylene-O-substituted alkyl wherein alkyl, substituted alkyl, alkylene and substituted alkylene are as defined herein.
- Preferred alkylalkoxy groups are alkylene-O-alkyl and include, by way of example, methylenemethoxy
- alkylthioalkoxy refers to the group -alkylene-S-alkyl, alkylene-S-substituted alkyl, substituted alkylene-S-alkyl and substituted alkylene- S-substituted alkyl wherein alkyl, substituted alkyl, alkylene and substituted alkylene are as defined herein.
- Preferred alkylthioalkoxy groups are alkylene-S- alkyl and include, by way of example, methylenethiomethoxy (-CH 2 SCH 3 ), ethylenethiomethoxy (-CH 2 CH 2 SCH 3 ), n-propylene-wo-thiopropoxy
- alkenyl refers to a monoradical of a branched or unbranched unsaturated hydrocarbon group preferably having from 2 to 40 carbon atoms, more preferably 2 to 10 carbon atoms and even more preferably 2 to 6 carbon atoms and having at least 1 and preferably from 1-6 sites of vinyl unsaturation.
- substituted alkenyl refers to an alkenyl group as defined above having from 1 to 5 substituents, and preferably 1 to 3 substituents, selected from the group consisting of alkoxy, substituted alkoxy, cycloalkyl, substituted cycloalkyl, cycloalkenyl, substituted cycloalkenyl, acyl, acylamino, acyloxy, amino, substituted amino, aminoacyl, aminoacyloxy, oxyaminoacyl, azido, cyano, halogen, hydroxyl, keto, thioketo, carboxyl, carboxylalkyl, thioaryloxy, thioheteroaryloxy, thioheterocyclooxy, thiol, thioalkoxy, substituted thioalkoxy, aryl, aryloxy, heteroaryl, heteroaryloxy, heterocyclic, heterocyclooxy, hydroxyamino, alkoxyamino
- alkenylene refers to a diradical of a branched or unbranched unsaturated hydrocarbon group preferably having from 2 to 40 carbon atoms, more preferably 2 to 10 carbon atoms and even more preferably 2 to 6 carbon atoms and having at least 1 and preferably from 1-6 sites of vinyl unsaturation.
- substituted alkenylene refers to an alkenylene group as defined above having from 1 to 5 substituents, and preferably from 1 to 3 substituents, selected from the group consisting of alkoxy, substituted alkoxy, cycloalkyl, substituted cycloalkyl, cycloalkenyl, substituted cycloalkenyl, acyl, acylamino, acyloxy, amino, substituted amino, aminoacyl, aminoacyloxy, oxyaminoacyl, azido, cyano, halogen, hydroxyl, keto, thioketo, carboxyl, carboxylalkyl, thioaryloxy, thioheteroaryloxy, thioheterocyclooxy, thiol, thioalkoxy, substituted thioalkoxy, aryl, aryloxy, heteroaryl, heteroaryloxy, heterocyclic, heterocyclooxy, hydroxyamino, alkoxyamin
- substituted alkenylene groups include those where 2 substituents on the alkenylene group are fused to form one or more cycloalkyl, substituted cycloalkyl, cycloalkenyl, substituted cycloalkenyl, aryl, heterocyclic or heteroaryl groups fused to the alkenylene group.
- alkynyl refers to a monoradical of an unsaturated hydrocarbon preferably having from 2 to 40 carbon atoms, more preferably 2 to 20 carbon atoms and even more preferably 2 to 6 carbon atoms and having at least 1 and preferably from 1-6 sites of acetylene (triple bond) unsaturation.
- Preferred alkynyl groups include ethynyl (-C ⁇ CH 2 ), propargyl (-CH 2 C ⁇ CH) and the like.
- substituted alkynyl refers to an alkynyl group as defined above having from 1 to 5 substituents, and preferably 1 to 3 substituents, selected from the group consisting of alkoxy, substituted alkoxy, cycloalkyl, substituted cycloalkyl, cycloalkenyl, substituted cycloalkenyl, acyl, acylamino, acyloxy, amino, substituted amino, aminoacyl, aminoacyloxy, oxyaminoacyl, azido, cyano, halogen, hydroxyl, keto, thioketo, carboxyl, carboxylalkyl, thioaryloxy, thioheteroaryloxy, thioheterocyclooxy, thiol, thioalkoxy, substituted thioalkoxy, aryl, aryloxy, heteroaryl, heteroaryloxy, heterocyclic, heterocyclooxy, hydroxyamino, alkoxya
- alkynylene refers to a diradical of an unsaturated hydrocarbon preferably having from 2 to 40 carbon atoms, more preferably 2 to 10 carbon atoms and even more preferably 2 to 6 carbon atoms and having at least 1 and preferably from 1-6 sites of acetylene (triple bond) unsaturation.
- Preferred alkynylene groups include ethynylene (-C ⁇ C-), propargylene (-CHC ⁇ C-) and the like.
- substituted alkynylene refers to an alkynylene group as defined above having from 1 to 5 substituents, and preferably 1 to 3 substituents, selected from the group consisting of alkoxy, substituted alkoxy, cycloalkyl, substituted cycloalkyl, cycloalkenyl, substituted cycloalkenyl, acyl, acylamino, acyloxy, amino, substituted amino, aminoacyl, aminoacyloxy, oxyaminoacyl, azido, cyano, halogen, hydroxyl, keto, thioketo, carboxyl, carboxylalkyl, thioaryloxy, thioheteroaryloxy, thioheterocyclooxy, thiol, thioalkoxy, substituted thioalkoxy, aryl, aryloxy, heteroaryl, heteroaryloxy, heterocyclic, heterocyclooxy, hydroxyamino, alkoxya
- acyl refers to the groups HC(O)-, alkyl-C(O)-, substituted alkyl-C(O)-, cycloalkyl-C(O)-, substituted cycloalkyl-C(O)-, cycloalkenyl-C(O)-, substituted cycloalkenyl-C(O)-, aryl-C(O)-, heteroaryl-C(O)- and heterocyclic- C(O)- where alkyl, substituted alkyl, cycloalkyl, substituted cycloalkyl, cycloalkenyl, substituted cycloalkenyl, aryl, heteroaryl and heterocyclic are as defined herein.
- acylamino refers to the group -C(O)NRR where each R is independently hydrogen, alkyl, substituted alkyl, aryl, heteroaryl, heterocyclic or where both R groups are joined to form a heterocyclic group (e.g. , morpholino) wherein alkyl, substituted alkyl, aryl, heteroaryl and heterocyclic are as defined herein.
- aminoacyl refers to the group -NRC(O)R where each R is independently hydrogen, alkyl, substituted alkyl, aryl, heteroaryl, or heterocyclic wherein alkyl, substituted alkyl, aryl, heteroaryl and heterocyclic are as defined herein.
- aminoacyloxy refers to the group -NRC(O)OR where each R is independently hydrogen, alkyl, substituted alkyl, aryl, heteroaryl, or heterocyclic wherein alkyl, substituted alkyl, aryl, heteroaryl and heterocyclic are as defined herein.
- acyloxy refers to the groups alkyl-C(O)O-, substituted alkyl- C(O)O-, cycloalkyl-C(O)O-, substituted cycloalkyl-C(O)O-, aryl-C(O)O-, heteroaryl-C(O)O-, and heterocyclic-C(O)O- wherein alkyl, substituted alkyl, cycloalkyl, substituted cycloalkyl, aryl, heteroaryl, and heterocyclic are as defined herein.
- aryl refers to an unsaturated aromatic carbocyclic group of from 6 to 20 carbon atoms having a single ring (e.g. , phenyl) or multiple condensed (fused) rings (e.g. , naphthyl or anthryl). Preferred aryls include phenyl, naphthyl and the like.
- such aryl groups can optionally be substituted with from 1 to 5 substituents, preferably 1 to 3 substituents, selected from the group consisting of acyloxy, hydroxy, thiol, acyl, alkyl, alkoxy, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, substituted alkyl, substituted alkoxy, substituted alkenyl, substituted alkynyl, substituted cycloalkyl, substituted cycloalkenyl, amino, substituted amino, aminoacyl, acylamino, alkaryl, aryl, aryloxy, azido, carboxyl, carboxylalkyl, cyano, halo, nitro, heteroaryl, heteroaryloxy, heterocyclic, heterocyclooxy, aminoacyloxy, oxyacylamino, thioalkoxy, substituted thioalkoxy, thioaryl
- aryl substituents include alkyl, alkoxy, halo, cyano, nitro, trihalomethyl, and thioalkoxy.
- aryloxy refers to the group aryl-O- wherein the aryl group is as defined above including optionally substituted aryl groups as also defined above.
- arylene refers to the diradical derived from aryl (including substituted aryl) as defined above and is exemplified by 1,2-phenylene, 1,3- phenylene, 1,4-phenylene, 1 ,2-naphthylene and the like.
- amino refers to the group -NH 2 .
- substituted amino refers to the group -NRR where each R is independently selected from the group consisting of hydrogen, alkyl, substituted alkyl, cycloalkyl, substituted cycloalkyl, alkenyl, substituted alkenyl, cycloalkenyl, substituted cycloalkenyl, alkynyl, substituted alkynyl, aryl, heteroaryl and heterocyclic provided that both R's are not hydrogen.
- carboxyalkyl refers to the groups "-C(O)O-alkyl", “-C(O)O- substituted alkyl", “-C(O)O-cycloalkyl", “-C(O)O-substituted cycloalkyl", “- C(O)O-alkenyl”, “-C(O)O-substituted alkenyl", “-C(O)O-alkynyl” and "-C(O)O- substituted alkynyl” where alkyl, substituted alkyl, cycloalkyl, substituted cycloalkyl, alkenyl, substituted alkenyl, alkynyl and substituted alkynyl are as defined herein.
- cycloalkyl refers to cyclic alkyl groups of from 3 to 20 carbon atoms having a single cyclic ring or multiple condensed rings.
- Such cycloalkyl groups include, by way of example, single ring structures such as cyclopropyl, cyclobutyl, cyclopentyl, cyclooctyl, and the like, or multiple ring structures such as adamantanyl, and the like.
- substituted cycloalkyl refers to cycloalkyl groups having from 1 to 5 substituents, and preferably 1 to 3 substituents, selected from the group consisting of alkoxy, substituted alkoxy, cycloalkyl, substituted cycloalkyl, cycloalkenyl, substituted cycloalkenyl, acyl, acylamino, acyloxy, amino, substituted amino, aminoacyl, aminoacyloxy, oxyaminoacyl, azido, cyano, halogen, hydroxyl, keto, thioketo, carboxyl, carboxylalkyl, thioaryloxy, thioheteroaryloxy, thioheterocyclooxy, thiol, thioalkoxy, substituted thioalkoxy, aryl, aryloxy, heteroaryl, heteroaryloxy, heterocyclic, heterocyclooxy, hydroxyamino, alkoxyamino
- cycloalkenyl refers to cyclic alkenyl groups of from 4 to 20 carbon atoms having a single cyclic ring and at least one point of internal unsaturation.
- suitable cycloalkenyl groups include, for instance, cyclobut-2-enyl, cyclopent-3-enyl, cyclooct-3-enyl and the like.
- substituted cycloalkenyl refers to cycloalkenyl groups having from 1 to 5 substituents, and preferably 1 to 3 substituents, selected from the group consisting of alkoxy, substituted alkoxy, cycloalkyl, substituted cycloalkyl, cycloalkenyl, substituted cycloalkenyl, acyl, acylamino, acyloxy, amino, substituted amino, aminoacyl, aminoacyloxy, oxyaminoacyl, azido, cyano, halogen, hydroxyl, keto, thioketo, carboxyl, carboxylalkyl, thioaryloxy, thioheteroaryloxy, thioheterocyclooxy, thiol, thioalkoxy, ubstituted thioalkoxy, aryl, aryloxy, heteroaryl, heteroaryloxy, heterocyclic, heterocyclooxy, hydroxyamino
- halo or halogen refers to fluoro, chloro, bromo and iodo.
- heteroaryl refers to an aromatic group of from 1 to 15 carbon atoms and 1 to 4 heteroatoms selected from oxygen, nitrogen and sulfur within at least one ring (if there is more than one ring).
- heteroaryl groups can be optionally substituted with 1 to 5 substituents, preferably 1 to 3 substituents, selected from the group consisting of acyloxy, hydroxy, thiol, acyl, alkyl, alkoxy, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, substituted alkyl, substituted alkoxy, substituted alkenyl, substituted alkynyl, substituted cycloalkyl, substituted cycloalkenyl, amino, substituted amino, aminoacyl, acylamino, alkaryl, aryl, aryloxy, azido, carboxyl, carboxylalkyl, cyano, halo, nitro, heteroaryl, heteroaryloxy, heterocyclic, heterocyclooxy, aminoacyloxy, oxyacylamino, thioalkoxy, substituted thioalkoxy, thioaryloxy
- Preferred aryl substituents include alkyl, alkoxy, halo, cyano, nitro, trihalomethyl, and thioalkoxy.
- Such heteroaryl groups can have a single ring (e.g., pyridyl or furyl) or multiple condensed rings (e.g. , indolizinyl or benzothienyl).
- Preferred heteroaryls include pyridyl, pyrrolyl and furyl.
- heteroaryloxy refers to the group heteroaryl-O-.
- heteroarylene refers to the diradical group derived from heteroaryl (including substituted heteroaryl), as defined above, and is exemplified by the groups 2,6-pyridylene, 2,4-pyridiylene, 1,2-quinolinylene, 1,8- quinolinylene, 1 ,4-benzofuranylene, 2,5-pyridnylene, 2,5-indolenyl and the like.
- heterocycle or “heterocyclic” refers to a monoradical saturated unsaturated group having a single ring or multiple condensed rings, from 1 to 40 carbon atoms and from 1 to 10 hetero atoms, preferably 1 to 4 heteroatoms, selected from nitrogen, sulfur, phosphorus, and/or oxygen within the ring.
- heterocyclic groups can be optionally substituted with 1 to 5, and preferably 1 to 3 substituents, selected from the group consisting of alkoxy, substituted alkoxy, cycloalkyl, substituted cycloalkyl, cycloalkenyl, substituted cycloalkenyl, acyl, acylamino, acyloxy, amino, substituted amino, aminoacyl, aminoacyloxy, oxyaminoacyl, azido, cyano, halogen, hydroxyl, keto, thioketo, carboxyl, carboxylalkyl, thioaryloxy, thioheteroaryloxy, thioheterocyclooxy, thiol, thioalkoxy, substituted thioalkoxy, aryl, aryloxy, heteroaryl, heteroaryloxy, heterocyclic, heterocyclooxy, hydroxyamino, alkoxyamino, nitro
- heterocyclic groups can have a single ring or multiple condensed rings.
- Preferred heterocyclics include morpholino, piperidinyl, and the like.
- nitrogen heterocycles and heteroaryls include, but are not limited to, pyrrole, imidazole, pyrazole, pyridine, pyrazine, pyrimidine, pyridazine, indolizine, isoindole, indole, indazole, purine, quinolizine, isoquinoline, quinoline, phthalazine, naphthylpyridine, quinoxaline, quinazoline, cinnoline, pteridine, carbazole, carboline, phenanthridine, acridine, phenanthroline, isothiazole, phenazine, isoxazole, phenoxazine, phenothiazine, imidazolidine, imidazoline, piperidine, piperazine
- a preferred class of heterocyclics include “crown compounds” which refers to a specific class of heterocyclic compounds having one or more repeating units of the formula [-(CH 2 -) m Y-] where m is ⁇ 2, and Y at each separate occurrence can be O, N, S or P.
- Examples of crown compounds include, by way of example only, [-(CH 2 ) 3 -NH-] 3 , [-((CH 2 ) 2 -O) 4 -((CH 2 ) 2 -NH) 2 ] and the like. Typically such crown compounds can have from 4 to 10 heteroatoms and 8 to 40 carbon atoms.
- heterocyclooxy refers to the group heterocyclic-O-.
- thioheterocyclooxy refers to the group heterocyclic-S-.
- heterocyclene refers to the diradical group formed from a heterocycle, as defined herein, and is exemplified by the groups 2,6-morpholino, 2, 5 -morpholino and the like.
- oxyacylamino refers to the group -OC(O)NRR where each R is independently hydrogen, alkyl, substituted alkyl, aryl, heteroaryl, or heterocyclic wherein alkyl, substituted alkyl, aryl, heteroaryl and heterocyclic are as defined herein.
- pseudohalide refers to functional groups which react in displacement reactions in a manner similar to a halogen.
- Such functional groups include, by way of example, mesyl, tosyl, azido and cyano groups.
- thiol refers to the group -SH.
- thioalkoxy refers to the group -S-alkyl.
- substituted thioalkoxy refers to the group -S-substituted alkyl.
- thioaryloxy refers to the group aryl-S- wherein the aryl group is as defined above including optionally substituted aryl groups also defined above.
- heteroaryloxy refers to the group heteroaryl-S- wherein the heteroaryl group is as defined above including optionally substituted aryl groups as also defined above.
- any of the above groups which contain one or more substituents it is understood, of course, that such groups do not contain any substitution or substitution patterns which are sterically impractical and/or synthetically non- feasible.
- the compounds of this invention include all stereochemical isomers arising from the substitution of these compounds.
- pharmaceutically acceptable salt refers to salts which retain the biological effectiveness and properties of the multi-binding compounds of this invention and which are not biologically or otherwise undesirable.
- the multi-binding compounds of this invention are capable of forming acid and/or base salts by virtue of the presence of amino and/or carboxyl groups or groups similar thereto.
- Salts derived from inorganic bases include by way of example only, sodium, potassium, lithium, ammonium calcium and magnesium salts.
- Salts derived from organic bases include, but are not limited to, salts of primary, secondary and tertiary amines, such as alkyl amines, dialkyl amines, trialkyl amines, substituted alkyl amines, di(substituted alkyl) amines, tri(substituted alkyl) amines, alkenyl amines, dialkenyl amines, trialkenyl amines, substituted alkenyl amines, di(substituted alkenyl) amines, tri(substituted alkenyl) amines, cycloalkyl amines, di(cycloalkyl) amines, tri(cycloalkyl) amines, substituted cycloalkyl amines,
- Suitable amines include, by way of example only, isopropylamine, trimethyl amine, diethyl amine, tri(z ' s ⁇ -propyl) amine, tri(n- propyl) amine, ethanolamine, 2-dimethylaminoethanol, tromethamine, lysine, arginine, histidine, caffeine, procaine, hydrabamine, choline, betaine, ethylenediamine, glucosamine, N-alkylglucamines, theobromine, purines, piperazine, piperidine, morpholine, N-ethylpiperidine, and the like.
- carboxylic acid derivatives would be useful in the practice of this invention, for example, carboxylic acid amides, including carboxamides, lower alkyl carboxamides, dialkyl carboxamides, and the like.
- Salts derived from inorganic acids include hydrochloric acid, hydrobromic acid, sulfuric acid, nitric acid, phosphoric acid, and the like.
- Salts derived from organic acids include acetic acid, propionic acid, glycolic acid, pyruvic acid, oxalic acid, malic acid, malonic acid, succinic acid, maleic acid, fumaric acid, tartaric acid, citric acid, benzo ic acid, cinnamic acid, mandelic acid, methanesulfonic acid, ethanesulfonic acid, p-toluene-sulfonic acid, salicylic acid, and the like.
- protecting group refers to any group which when bound to one or more hydroxyl, thiol, amino or carboxyl groups of the compounds (including intermediates thereof) prevents reactions from occurring at these groups and which protecting group can be removed by conventional chemical or enzymatic steps to reestablish the hydroxyl, thiol, amino or carboxyl group (Green, Protective Groups in Organic Synthesis, 2 Ed., John Wiley &
- removable blocking group employed is not critical and preferred removable hydroxyl blocking groups include conventional substituents such as allyl, benzyl, acetyl, chloroacetyl, thiobenzyl, benzylidine, phenacyl, t-butyl-diphenylsilyl and any other group that can be introduced chemically onto a hydroxyl functionality and later selectively removed either by chemical or enzymatic methods in mild conditions compatible with the nature of the product.
- Preferred removable amino blocking groups include conventional substituents such as t-butyoxycarbonyl (t-BOC), benzyloxycarbonyl (CBZ), and the like which can be removed by conventional conditions compatible with the nature of the product.
- Preferred carboxyl protecting groups include esters such as methyl, ethyl, propyl, t-butyl etc. which can be removed by mild hydrolysis conditions compatible with the nature of the product.
- inert organic solvent or “inert solvent” mean a solvent inert under the conditions of the reaction being described in conjunction therewith [including, for example, benzene, toluene, acetonitrile, tetrahydrofuran (“THF”), dimethylformamide (“DMF”), chloroform (CHC1 3 ), methylene chloride (or dichloromethane or "CH 2 C1 2 "), diethyl ether, ethyl acetate, acetone, methylethyl ketone, methanol, ethanol, propanol, isopropanol, tert-butanol, dioxane, pyridine, and the like].
- the solvents used in the reactions of the present invention are inert solvents.
- the "PPAR ⁇ receptor” is a receptor and plays a role in the mechanisms of insulin sensitivity. PPAR ⁇ receptors are located primarily in adipose tissues throughout the body. The PPAR ⁇ receptor forms a heterodimer with the RXR receptor. Together, they act to affect insulin sensitivity in the cell, particularly as results from NIDDM, and may affect inflammatory diseases such as rheumatoid arthritis and inflammatory bowel disease, cancer such as colon carcinoma and lipocarcinoma, hyperlipidemia and arterioclerosis.
- PPAR ⁇ and RXR receptors that participate in biological multivalent binding interactions are constrained to varying degrees by their intra- and intermolecular associations (e.g. cellular receptors may be covalently joined in a single structure, noncovalently associated in a multimeric structure, embedded in a membrane or polymeric matrix and so on) and therefore have less translational and rotational freedom than if the same cellular receptors were present as monomers in solution.
- intra- and intermolecular associations e.g. cellular receptors may be covalently joined in a single structure, noncovalently associated in a multimeric structure, embedded in a membrane or polymeric matrix and so on
- library refers to at least 3, preferably from 10? to 10 ⁇ and more preferably from l ( fi to lO ⁇ multimeric compounds. Preferably, these compounds are prepared as a multiplicity of compounds in a single solution or reaction mixture which permits facile synthesis thereof.
- the library of multimeric compounds can be directly assayed for multibinding properties.
- each member of the library of multimeric compounds is first isolated and, optionally, characterized. This member is then assayed for multibinding properties.
- selection refers to a set of multimeric compounds which are prepared either sequentially or concurrently (e.g., combinatorially).
- the collection comprises at least 2 members; preferably from 2 to i ⁇ members and still more preferably from 10 to 1 ⁇ members.
- ligand binding site denotes the site on the PPAR ⁇ or RXR receptor that recognizes a ligand domain and provides a binding partner for that ligand.
- the ligand binding site may be defined by monomeric or multimeric structures. This interaction may be capable of producing a unique biological effect, for example agonism, antagonism, modulatory effect and the like or may maintain an ongoing biological event.
- PPAR ⁇ Ligand denotes a compound that is a binding partner for the PPAR ⁇ receptor and is bound thereto by complementarity.
- the specific region or regions of the ligand that is (are) recognized by the PPAR ⁇ receptor is designated as the "PPAR ligand domain" .
- a ligand may be either capable of binding to a receptor by itself, or may require the presence of one or mmoorree nnoonn--hgand components for binding (e.g. , Ca +2 , Mg +2 or a water molecule).
- RXR Ligand denotes a compound that is a binding partner for the RXR receptor and is bound thereto by complementarity.
- the specific region or regions of the ligand that is (are) recognized by the RXR receptor is designated as the "RXR ligand domain" .
- a ligand may be either capable of binding to a receptor by itself, or may require the presence of one or more non- ligand components for binding (e.g., Ca +2 , Mg +2 or a water molecule).
- PPAR ⁇ ligand or "RXR ligand” is not intended to be limited to compounds known to be useful as PPAR ⁇ and RXR receptor binding compounds (e.g., known drugs). It should also be understood that portions of the ligand structure that are not essential for specific molecular recognition and binding activity may be varied substantially, replaced with unrelated structures and, in some cases, omitted entirely without affecting the binding interaction. The primary requirement for the ligand is that it has a ligand domain as defined above. Those skilled in the art will understand that the term ligand can equally apply to a molecule that is not normally associated with PPAR ⁇ and RXR cellular receptor binding properties.
- ligands that exhibit marginal activity or lack useful activity as monomers can be highly active as multivalent compounds because of the benefits conferred by multivalency.
- the only requirement for a ligand is that it has a ligand binding domain as defined above.
- a “multimeric compound” refers to a compound that is capable of multivalency as defined below, and which has 2 to 10 ligands covalently bound to one or more linkers which may be the same or different.
- the compound may or may not possess multibinding properties.
- At least one of the ligands comprises a ligand domain capable of binding to one or more PPAR ⁇ receptors, and optionally RXR receptors.
- the multi -binding compound provides a biological and/or therapeutic effect greater than the aggregate of unlinked ligands equivalent thereto which may be the same or different which unlinked ligands comprise a ligand domain capable of binding to one or more PPAR ⁇ receptors, and optionally RXR receptors.
- the biological and/or therapeutic effect of the PPAR ⁇ and/or RXR binding ligands attached to the multi-binding compound is greater than that achieved by the same amount of unlinked PPAR ⁇ and/ or RXR ligands made available for binding to the ligand binding sites.
- the phrase "increased biological or therapeutic effect” includes, for example increased affinity for a target, increased specificity for a target, increased selectivity for a target, increased potency, increased efficacy, decreased toxicity, improved duration of action, decreased side effects, increased therapeutic index, improved bioavailability, improved pharmacokinetics, improved activity spectrum, and the like.
- the multi-binding compounds of this invention will exhibit at least one and preferably more than one of the above mentioned effects.
- Uni-valency refers to a single binding interaction between one ligand as defined herein with one ligand binding site as defined herein. It should be noted that a molecule having multiple copies of a ligand (or ligands) exhibits uni-valency when only one ligand is interacting with a ligand binding site. Examples of a univalent interaction are depicted below.
- Multi- valency refers to the concurrent binding of from 2 to 10 linked ligands (which may be the same or different) and two or more corresponding ligand binding sites on the receptors which receptors may be the same or different.
- bi-valency two ligands connected by a linker that bind concurrently to two ligand binding sites would be considered as bi-valency; three ligands thus connected would be an example of tri-valency.
- tri-valency An example of tri-valency illustrating a multi-binding agent bearing three ligands versus a monovalent binding interaction is shown below:
- “Potency” as used herein refers to the minimum concentration at which a ligand is able to achieve a desirable biological or therapeutic effect.
- the potency of a ligand is typically proportional to its affinity for its ligand binding site. In some cases the potency may be non-linearly correlated with its affinity.
- the dose-response curve of each is determined under identical test conditions (e.g. an in vitro or in vivo assay, in an appropriate animal model such as a human patient). The finding that the multi-binding agent produces an equivalent biological or therapeutic effect at a lower concentration than the aggregate unlinked ligand (e.g. on a per weight, per mole or per ligand basis) is indicative of enhanced potency.
- Selectivity is a measure of the binding preferences of a ligand for different ligand binding sites.
- the selectivity of a ligand with respect to its target ligand binding site relative to another ligand binding site is given by the ratio of the respective values of I j (i.e., the dissociation constants for each ligand- receptor complex) or in cases where a biological effect is observed below the I j, the ratio of the respective EC 5Q s (i.e. , the concentrations that produce 50% of the maximum response for the ligand interacting with the two distinct ligand binding sites).
- I j i.e., the dissociation constants for each ligand- receptor complex
- the ratio of the respective EC 5Q s i.e. , the concentrations that produce 50% of the maximum response for the ligand interacting with the two distinct ligand binding sites.
- modulatory effect refers to the ability of the ligand to change the activity of an agonist or antagonist through binding to a ligand binding
- partial agonist refers to a receptor agonist which cannot fully elicit a maximal response when it binds to the receptor, no matter how high the concentration of the partial agonist. A partial agonist is able to combine with the receptor, but the full effect of the binding is not elicited. This term is well known in the art and a discussion of it may be found in Textbook of Receptor Pharmacology, ch 1.4, J. Foreman and T. Johansen eds. , CRC Press, 1996.
- treatment refers to the treatment of diabetes, in particular insulin sensitivity in a mammal, particularly a human, and includes: (i) increasing insulin sensitivity in a subject; (ii) lowering insulin, triglyceride and free fatty acid serum levels; or (iii) relieving or reducing insulin resistance, e.g. , relieving or reducing the intensity and/or severity of the insulin resistance.
- therapeutically effective amount refers to that amount of multi- binding compound which is sufficient to effect treatment, as defined above, when administered to a mammal in need of such treatment.
- the therapeutically effective amount will vary depending upon the subject and disease condition being treated, the weight and age of the subject, the severity of the disease condition, the manner of administration and the like, which can readily be determined by one of ordinary skill in the art.
- linker refers to a group or groups that covalently link(s) from 2 to 10 ligands (as identified above) in a manner that provides for a compound capable of multi-valency when in the presence of at least one cellular receptor having 2 or more ligand binding sites.
- the linker is a ligand-orienting entity which may be chiral or achiral that permits attachment of multiple copies of a ligand (which may be the same or different) thereto. In some cases the linker may be biologically active.
- linker does not, however, extend to cover solid inert supports such as beads, glass particles, fibers and the like. But it is to be understood that the multi-binding compounds of this invention can be attached to a solid support if desired, for example, for use in separation and purification processes and for similar applications.
- the ligands and linkers which comprise the multibinding agents of the invention and the multibinding compounds themselves may have various stereoisomeric forms, including enantiomers and diastereomers. It is to be understood that the invention contemplates all possible stereoisomeric forms of multibinding compounds, and mixtures thereof.
- linker valency, geometry, orientation, size, flexibility, chemical composition
- linker valency, geometry, orientation, size, flexibility, chemical composition
- the linker when covalently attached to the ligands, provides a biocompatible, substantially non- immunogenic multi-binding compound of this invention.
- the biological activity of the multi-binding compound is highly sensitive to the valency, geometry, composition, size, flexibility or rigidity, etc. of the linker as well as the presence or absence of anionic or cationic charge, the relative hydrophobicity/hydrophilicity of the linker, and the like on the linker.
- the linker may be chosen from any organic molecule construct that orients two or more ligands to the receptors to permit multi-valency.
- the linker can be considered as a "framework" on which the ligands are arranged in order to bring about the desired ligand-orienting result, and thus produce a multi- binding compound.
- Ancillary groups which enhance the water solubility/hydrophilicity of the linker and, accordingly, the resulting multi-binding compounds are useful in practicing this invention.
- ancillary groups such as, for example, poly (ethylene glycols), alcohols, polyols, (e.g., glycerin, glycerol propoxylate, saccharides, including mono-, oligo- and poly saccharides, etc.) carboxylates, polycarboxylates, (e.g.
- the ancillary group used to improve water solubility/hydrophilicity will be a polyether.
- the ancillary group will be a poly (ethylene glycol).
- lipophilic ancillary groups within the structure of the linker to enhance the lipophilicity and/or hydrophobicity of the multi-binding compounds described herein is within the scope of this invention.
- Lipophilic groups useful with the linkers of this invention include, by way of example only, aryl and heteroaryl groups which, as above, may be either unsubstituted or substituted with other groups, but are at least substituted with a group which allows their covalent attachment to the linker.
- Other lipophilic groups useful with the linkers of this invention include fatty acid derivatives which do not form bilayers in aqueous medium until higher concentrations are reached.
- lipid refers to any fatty acid derivative that is capable of forming a bilayer such that a hydrophobic portion of the lipid material orients toward the bilayer while a hydrophilic portion orients toward the aqueous phase. Hydrophilic characteristics derive from the presence of phosphato, carboxylic, sulfato, amino, sulfhydryl, nitro and other like groups well known in the art.
- Hydrophobicity could be conferred by the inclusion of groups that include, but are not limited to, long chain saturated and unsaturated aliphatic hydrocarbon groups of up to 20 carbon atoms and such groups substituted by one or more aryl, heteroaryl, cycloalkyl, and/or heterocyclic group(s).
- Preferred lipids are phosphoglycerides and sphingolipids, representative examples of which include phosphatidylcholine, phosphatidylethanolamine, phosphatidylserine, phosphatidylinositol, phosphatidic acid, palmitoyleoyl phosphatidylcholine, ly sophosphatidylcholine , ly sophosphatidyl-ethanolamine , dipalmitoy lphosphatidy lcholine , dioleoy lphosphatidy lcholine , distearoy 1- phosphatidylcholine or dilinoleoy lphosphatidy lcholine could be used.
- lipid Other compounds lacking phosphorus, such as sphingolipid and glycosphingolipid families are also within the group designated as lipid. Additionally, the amphipathic lipids described above may be mixed with other lipids including triglycerides and sterols.
- the flexibility of the linker can be manipulated by the inclusion of ancillary groups which are bulky and/or rigid.
- ancillary groups which are bulky and/or rigid.
- the presence of bulky or rigid groups can hinder free rotation about bonds in the linker or bonds between the linker and the ancillary group(s) or bonds between the linker and the functional groups.
- Rigid groups can include, for example, those groups whose conformational lability is restrained by the presence of rings and/or multiple bonds, for example, aryl, heteroaryl, cycloalkyl and heterocyclic groups.
- Other groups which can impart rigidity include polypeptide groups such as oligo- or polyproline chains.
- Rigidity can also be imparted electrostatically.
- the ancillary groups are either positively or negatively charged, the similarly charged ancillary groups will force the presenter linker into a configuration affording the maximum distance between each of the like charges.
- the energetic cost of bringing the like- charged groups closer to each other will tend to hold the linker in a configuration that maintains the separation between the like -charged ancillary groups.
- Further ancillary groups bearing opposite charges will tend to be attracted to their oppositely charged counterparts and potentially may enter into both inter- and intramolecular ionic bonds. This non-covalent mechanism will tend to hold the linker into a conformation which allows bonding between the oppositely charged groups.
- ancillary groups which are charged, or alternatively, bear a latent charge when deprotected, following the addition to the linker, include deprotectation of a carboxyl, hydroxyl, thiol or amino protecting group, by a change in pH, oxidation, reduction or other mechanisms known to those skilled in the art, is within the scope of this invention.
- Bulky groups can include, for example, large atoms, ions (e.g. , iodine, sulfur, metal ions, etc.) or groups containing large atoms, polycyclic groups, including aromatic groups, non-aromatic groups and structures incorporating one or more carbon-carbon multiple bonds (i.e., alkenes and alkynes). Bulky groups can also include oligomers and polymers which are branched- or straight-chain species. Species that are branched are expected to increase the rigidity of the structure more per unit molecular weight gain than are straight-chain species. In preferred embodiments, rigidity is imparted by the presence of cyclic groups (e.g.
- the linker comprises one or more six- membered rings or crown groups which, while not rigid, retain the conformation of the linker through conformational entropy.
- the multi-binding compounds described herein comprise 2-10 ligands for PPAR ⁇ and/or RXR, so long as at least one PPAR ⁇ ligand is present, attached to a linker that links the ligands in such a manner that they are presented to the PPAR ⁇ /RXR receptor complex for multivalent interactions.
- the linker spatially constrains these interactions to occur within dimensions defined by the linker, thus greatly increasing biological activity of the multi-binding compound as compared to the same number of ligands used in mono-binding form.
- the multi-binding compounds of this invention are preferably represented by the empirical formula (L) p (X) q where L, X, p and q are as defined above. This is intended to include the several ways in which the ligands can be linked together in order to achieve the objective of multi- valency, and a more detailed explanation is described below.
- the linker may be considered as a framework to which ligands are attached.
- the ligands can be attached at any suitable position on this framework, for example, at the termini of a linear chain or at any intermediate position.
- the simplest and most preferred multi-binding compound is a bivalent compound which can be represented as L-X-L, where L is a ligand and is the same or different and X is the linker.
- a trivalent compound could also be represented in a linear fashion, i.e., as a sequence of repeated units L-X-L-X-L, in which L is a ligand and is the same or different at each occurrence, as can X.
- a trimer can also be a multi-binding compound comprising three ligands attached to a central core, and thus represented as (LgX, where the linker X could include, for example, an aryl or cycloalkyl group.
- Tetravalent compounds can be represented as, for example, in a linear array:
- linker when used in combination with the term “multibinding compound” includes both a covalently contiguous single linker (e.g., L-X-L) and multiple covalently non-contiguous linkers (L-X-L-X-L) within the multibinding compound.
- the multibinding compounds of this invention can be prepared from readily available starting materials using the following general methods and procedures. It will be appreciated that where typical or preferred process conditions (i.e., reaction temperatures, times, mole ratios of reactants, solvents, pressures, etc.) are given, other process conditions can also be used unless otherwise stated. Optimum reaction conditions may vary with the particular reactants or solvent used, but such conditions can be determined by one skilled in the art by routine optimization procedures. Additionally, as will be apparent to those skilled in the art, conventional protecting groups may be necessary to prevent certain functional groups from undergoing undesired reactions. The choice of a suitable protecting group for a particular functional group as well as suitable conditions for protection and deprotection are well known in the art. For example, numerous protecting groups, and their introduction and removal, are described in T. W. Greene and G. M. Wuts, Protecting Groups in Organic Synthesis, Second Edition, Wiley, New York, 1991, and references cited therein.
- Any compound which acts as a ligand toward PPAR ⁇ and/or RXR can be used as a ligand in this invention.
- numerous such ligands are known in the art and any of these known compounds or derivatives thereof may be employed as ligands in this invention. Such known ligands are now further described.
- PPAR ligands include those illustrated below:
- RI is selected from OH, alkyl, substituted alkyl, alkoxy, heteroalkyl, substituted heteroalkyl, cycloalkyl, substituted cycloalkyl, cycloheteroalkyl, substituted cycloheteroalkyl, aryl, substituted aryl, aryloxy, heteroaryl, and substituted heteroaryl;
- R2 is selected from hydrogen or alkyl
- R3 is selected from hydrogen, alkyl, substituted alkyl, I, Br, Cl or F;
- R4 is selected from alkyl, substituted alkyl, heteroalkyl, substituted heteroalkyl, cycloalkyl, substimted cycloalkyl, cycloheteroalkyl, substituted cycloheteroalkyl, aryl, substituted aryl, heteroaryl, and substituted heteroaryl;
- R5 is H, OH, NH 2 , or alkoxy, or R4 and R5 together form -C(O)-NH-;
- R is selected from the group consisting of H, Cl-6 alkyl, C5-10 aryl, and C5-10 heteroaryl, said alkyl, aryl and heteroaryl optionally substituted with 1 to 3 groups of Ra;
- RI is selected from a group consisting of: H, Cl-15 alkyl, C2-15 alkenyl, C2-15 alkynyl and C3-10 cycloalkyl, said alkyl, alkenyl, alkynyl, and cycloalkyl optionally substituted with 1 to 3 groups of Ra;
- R3 is selected from a group consisting of: H, NHR1, NHacyl, Cl-15 alkyl, C3-10 cycloalkyl, C2-15 alkenyl, Cl-15 alkoxy, CO2 alkyl, OH, C2-15 alkynyl, C5-10 aryl, C5-10 heteroaryl said alkyl, cycloalkyl, alkenyl, alkynyl, aryl and heteroaryl optionally substituted with 1 to 3 groups of Ra;
- R8 is selected from the group consisting of CR6 R7, O, NR6, and S(Ol; R6 and R7 are independently selected from the group consisting of H, Cl-6 alkyl;
- B is selected from the group consisting of:
- XI and X2 are independently selected from a group consisting of: H, OH, Cl-15 alkyl, C2-15 alkenyl, C2-15 alkynyl, halo, OR3, ORCF 3 , C5-10 aryl, C5-10 aralkyl, C5-10 heteroaryl and Cl-10 acyl, said alkyl, alkenyl, alkynyl, aryl and heteroaryl optionally substituted with 1 to 3 groups of Ra;
- Ra represents a member selected from the group consisting of: halo, acyl, aryl, heteroaryl, CF3, OCF3, -O-, CN, NC ⁇ , R3, OR3 ;
- SR3, N(OR), S(O)R3, SO 2 R3, NR3, R3, NR3 COR3, NR3CO 2 R3, NR3CON(R3) 2 , NR3SO 2 R3, COR3, CO 2 R3, CON(R3) 2 , SO 2 N(R3) 2 , OCON(R3) 2 said aryl and heteroaryl optionally substituted with 1 to 3 groups of halo or Cl-6 alkyl;
- Y is selected from the group consisting of: S(O)p, --CH2 — , — C(O) ⁇ , ⁇ C(O)NH ⁇ , -NR-, -O-, -SO 2 NH, -NHSO 2 ;
- Yl is selected from the group consisting of: O and C; Z is selected from the group consisting of: CO ⁇ R.3, R3CO 2 R3,
- Q is a saturated or unsaturated straight chain hydrocarbon containing 2-4 carbon atoms and p is 0-2 with the proviso when Z is CC ⁇ RB and B is a 5 membered heterocycle consisting of O, R3 does not represent methyl, as illustrated in US Patent No. 5,869,051, incorporates herein in its entirety by reference, and derivatives thereof; and
- each R is independently H, OH, alkyl of 1 to 6 carbon atoms which may be straight chain or branched; alkenyl of 2 to 6 carbon atoms which may be straight chain or branched; trifluoromethyl; alkoxy of 1 to 6 carbon atoms which may be straight chain or branched; SH; thioalkyl of 1 to 6 carbon atoms which may be straight chain or branched; phenyl; phenyl substituted by alkyl of 1 to 3 carbon atoms or by halogen; benzyl; phenethyl; halogen, amino; N(R4) 2 wherein R4 is H or alkyl of 1 to 6 carbon atoms which may be straight chain or branched; COOR4; CH 2 OR4 ; formyl; CN; trifluoromethylthio; or nitro; each R' is independently R4 ; OR4 ; COOR4 ; N(R4) 2 ; SR4 ; CH 2 OR4; CHO;
- Y' is sulfur, sulfoxide,sulfone
- Rl l is H, alkyl of 1-4 carbon atoms which may be straight chain or branched; alkanoyl of 1-4 carbon atoms which may be straight chain or branched; phenylsulfonyl; tosyl; NR12 wherein R12 is H, alkyl of 1-4 carbon atoms which may be straight chain or branched; or
- R5 is COOR4 ; CH 2 OH; CHO; tetrazole; NHSO 2 R14 ; hydroxymethylketone; CN; CON(R7) 2 ; a monocyclic or bicyclic heterocyclic ring containing an acidic hydroxyl group; or COOR15 where R15 is
- each s is independently 0-3 ;
- R16 is A) a monocyclic or bicyclic heterocyclic radical containing from 3 to 12 nuclear carbon atoms and 1 or 2 nuclear heteroatoms selected from N and S with at least one being N, and with each ring in the heterocyclic radical being formed of 5 or 6 atoms, or
- W--R17 wherein W is O, S or NH and R17 contains up to 21 carbon atoms and is (1) a hydrocarbon radical or (2) an acyl radical of an organic acyclic or monocyclic carboxylic acid containing not more than 1 heteroatom in the ring;
- R14 is OH, alkyl or alkoxy of 1 to 6 carbon atoms, phenyl or phenyl substituted by alkyl or alkoxy groups of 1 to 3 carbon atoms, halogen, hydroxy, haloalkyl, COOH, CN, formyl, acyl of 1 to 6 carbon atoms or perfluoroalkyl of 1 to 4 carbon atoms; r and q are each independently 0-20 provided that the total of r and q does not exceed 20; p is 0 or 1 ;
- R9 is alkyl of 1 to 6 carbon atoms which may be straight chain or branched; alkoxy of 1 to 6 carbon atoms which may be straight chain or branched; or (CH 2 ) r R5; and
- RIO is H; alkyl of 1 to 6 carbon atoms which may be straight chain or branched; R 4 C(O) or R4OCH 2 , as described in US Patent No. 5,847,008, incorporated herein in its entirety by reference, and derivatives thereof.
- R is selected from alkyl, substituted alkyl, alkaryl, acyl, acylamino, cycloalkyl, heterocyclic, aryl, substituted aryl, and heteroaryl;
- RI is selected from alkyl, substituted alkyl, alkaryl, acyl, acylamino, cycloalkyl, heterocyclic, aryl, substituted aryl, and heteroaryl, and preferably RI is an the ortho position;
- R2 is selected from alkyl, substituted alkyl and hydrogen
- R4 is selected from alkyl, substituted alkyl, heteroalkyl, substituted heteroalkyl, cycloalkyl, substituted cycloalkyl, cycloheteroalkyl, substituted cycloheteroalkyl, aryl, substituted aryl, heteroaryl, and substituted heteroaryl; m is 0 when W is H, alkyl or substituted alkyl; else m is 1. W is selected from S, NH, H, -CH 2 -, alkyl, or substituted alkyl
- X is selected from I, F, Cl, Br, H, alkyl, and substituted alkyl;
- Y is selected from S, O and N;
- Suitable RXR ligands for use in the invention may include known RXR ligands such as the following:
- LG100268 Derivatives of RXR ligands may also be used in preparation of the invention. Such derivatives may be selected from one or more of the following formulas II-IV:
- X, XI and X2 are independently selected from the group consisting of H, OH, I, Br, Cl, F, Na, SH, O, NH, carbonyl, amide, alkyl, alkoxy, aryl, aryloxy, and alkaryl;
- R is aryl, substituted aryl, alkyl, substituted alkyl, heteroaryl, or substituted heteroaryl;
- RI is H or alkyl;
- R2 is H or alkyl;
- R3 is CH 2 , O, or NOR4 wherein R4 is alkyl or substituted alkyl;
- R2 R2 R2 R2 and n is 1-10.
- RXR and PPAR ⁇ ligands and derivatives may be known to those in the art.
- RXR and PPAR ⁇ ligands or derivatives thereof used in the invention are preferentially bound to only the RXR or PPAR ⁇ receptor, respectively.
- the PPAR ligand or derivative thereof preferentially bind only to the PPAR ⁇ receptor.
- RXR receptor Activation of the RXR receptor with known RXR ligands can lead to modulation of the transcriptional activity of a wide variety of RXR/nuclear receptor complexes.
- the activation of the RXR receptor by the use of RXR ligands may potentiate many other effects within the body. Because of this lack of functional specificity, use of a modified RXR ligand as set forth above to control transcription exclusivity by the PPAR ⁇ /RXR heterodimer is preferred.
- the RXR ligands used in the invention are a derivative of known RXR ligands exhibiting more limited functionality and less independent activation of, or lower binding affinity for, other RXR/nuclear receptor complexes which are not of interest.
- PPAR ⁇ ligands are very specific in that they bind preferentially to only the PPAR ⁇ receptor. These ligands, some of which are exemplified herein, and derivatives of other known PPAR agonists selected for preferential binding to the PPAR ⁇ receptor, may be used herein.
- fatty acids, eicosanoids, prostaglandins and metabolites thereof activate PPAR ⁇ , as do do non-steroidal anti-inflammatory drugs (NSAIDS).
- NSAIDS non-steroidal anti-inflammatory drugs
- fatty acids such as 15 deoxy D ' PGJ 2 , linoleic acid, ⁇ -linolenic acid, oleic acid, stearic acid, cis-pariniaric acid, eicosopentonoic acid ad decosahexanoic acid bind well to the PPAR ⁇ receptor, they are not specific to the PPAR ⁇ receptor.
- the NSAIDS are not specific and also may have a low affinity for the PPAR ⁇ receptor. Therefore, because these compounds activate one or more of the PPAR receptors, including both PPAR ⁇ and PPAR , as well as potentially other receptors, they prompt too broad a response causing potentially undesirable reactions and side effects. Therefore, these would not form acceptable ligands for the invention described herein, although derivatives thereof may be identified which would preferentially bind to the PPAR ⁇ receptor a ⁇ d therefore could be used in the invention described herein.
- TZDs thiazolidinediones
- glitazones are high-affinity agonists of PPAR ⁇ .
- the glitazones enhance the sensitivity of target tissues to insulin while reducing serum insulin and lipid levels, as well as reducing plasma levels of free fatty acids, triglycerides and total cholesterol in mammals having Type 2 diabetes, which affects the proper storage and utilization of energy in the body in the form of glucose.
- NIDDM is characterized by high plasma glucose levels, insulin resistance, and insufficient insulin secretion by the ⁇ -cells of the pancreas.
- NIDDM Drug treatment of NIDDM classically focuses on increasing insulin secretion, creating a condition of hyperinsulemia which creates a risk of heart disease.
- Some TZDs cause increases in plasma volume, increased adipose cell formation in bone marrow at high doses, and are known to have a hepatatoxic effect. Further some TZDs lack potency for the PPAR ⁇ receptor, therefore requiring high patient doses or frequent patient dosing, and potentially leading to non-mechanism (i.e., non- PPAR ⁇ binding) related side effects or toxicities. Diabetes Vol. 47, (1998) 507- 514. Therefore, although TZDs may be used as ligands for the invention described herein, derivatives thereof may be desired. Further herein, the PPAR ⁇ ligand or ligand derivatives suitable for use in the invention A-K are referred to as LI -LI 1, and the RXR ligands or derivatives thereof II-IV are referred to as LI 2- 14.
- factors such as the proper juxtaposition of the individual ligands of a multibinding compound with respect to the relevant array of binding sites on a target or targets is important in optimizing the interaction of the multibinding compound with its target(s) and to maximize the biological advantage through multivalency.
- One approach is to identify a library of candidate multibinding compounds with properties spanning the multibinding parameters that are relevant for a particular target. These parameters include: (1) the identity of ligand(s), (2) the orientation of ligands, (3) the valency of the construct, (4) linker length, (5) linker geometry, (6) linker physical properties, and (7) linker chemical functional groups.
- a single ligand or set of ligands is (are) selected for incorporation into the libraries of candidate multibinding compounds which library is directed against a particular biological target or targets.
- the only requirement for the ligands chosen is that they are capable of interacting with the selected target(s).
- ligands may be known drugs, modified forms of known drugs, substructures of known drugs or substrates of modified forms of known drugs (which are competent to interact with the target), or other compounds.
- Ligands are preferably chosen based on known favorable properties that may be projected to be carried over to or amplified in multibinding forms. Favorable properties include demonstrated safety and efficacy in human patients, ability to increase insulin sensitivity, ability to lower serum triglyceride, cholesterol and/or fatty acid levels, etc.
- ligands which display an unfavorable property from among the previous list may obtain a more favorable property through the process of multibinding compound formation; i.e., ligands should not necessarily be excluded on such a basis.
- a ligand that is not sufficiently potent at a particular target so as to be efficacious in a human patient may become highly potent and efficacious when presented in multibinding form.
- a ligand that is potent and efficacious but not of utility because of a non-mechanism-related toxic side effect may have increased therapeutic index (increased potency relative to toxicity) as a multibinding compound.
- Compounds that exhibit short in vivo half-lives may have extended half-lives as multibinding compounds.
- Physical properties of ligands that limit their usefulness e.g. poor bioavailability due to low solubility, hydrophobicity, hydrophilicity
- Orientation selection of ligand attachment points and linking chemistry Several points are chosen on each ligand at which to attach the ligand to the linker.
- the selected points on the ligand/linker for attachment are functionalized to contain complementary reactive functional groups. This permits probing the effects of presenting the ligands to their receptor(s) in multiple relative orientations, an important multibinding design parameter.
- the only requirement for choosing attachment points is that attaching to at least one of these points does not abrogate activity of the ligand.
- Such points for attachment can be identified by structural information when available.
- evaluation of ligand/target binding by nuclear magnetic resonance will permit the identification of sites non- essential for ligand/target binding. See, for example, Fesik, et al. , U.S.
- SAR structure-activity relationships
- positions of attachment that do abrogate the activity of the monomeric ligand may also be advantageously included in candidate multibinding compounds in the library provided that such compounds bear at least one ligand attached in a manner which does not abrogate intrinsic activity. This selection derives from, for example, heterobivalent interactions within the context of a single target molecule.
- a receptor antagonist ligand bound to its target receptor and then consider modifying this ligand by attaching to it a second copy of the same ligand with a linker which allows the second ligand to interact with the same receptor molecule at sites proximal to the antagonist binding site, which include elements of the receptor that are not part of the formal antagonist binding site and/ or elements of the matrix surrounding the receptor such as the membrane.
- the most favorable orientation for interaction of the second ligand molecule with the receptor/matrix may be achieved by attaching it to the linker at a position which abrogates activity of the ligand at the formal antagonist binding site.
- Another way to consider this is that the SAR of individual ligands within the context of a multibinding structure is often different from the SAR of those same ligands in momomeric form.
- biva'ent advantage may also be attained with heterodimeric constructs bearing two different ligands that bind to common or different targets.
- a PPAR ⁇ receptor agonist and an RXR receptor agonist may be joined to a linker through attachment points which do not abrogate the binding affinity of the monomeric ligands for their respective receptor sites.
- the dimeric compound may achieve enhanced affinity for both receptors due to favorable interactions between the PPAR ⁇ ligand and elements of the RXR receptor proximal to the formal RXR agonist binding site and between the RXR ligand and elements of the PPAR ⁇ receptor proximal to the formal PPAR ⁇ agonist binding site.
- the dimeric compound may be a more potent and selective agonist of insulin sensitivity and a superior therapy for NIDDM, cancer including colon carcinomas and lipocarcinomas, hyperlipedemia, arteriosclerosis and inflammatory diseases such as rheumatoid arthritis and inflammatory bowel disease.
- linkages that are possible at those points.
- the most preferred types of chemical linkages are those that are compatible with the overall structure of the ligand (or protected forms of the ligand), readily and generally formed, stable and intrinsically innocuous under typical chemical and physiological conditions, and compatible with a large number of available linkers. Amide bonds, ethers, amines, carbamates, ureas, and sulfonamides are but a few examples of preferred linkages.
- Linkers spanning relevant multibinding parameters through selection of valency, linker length, linker geometry, rigidity, physical properties, and chemical functional groups
- the selection of linkers employed in this library of linkers takes into consideration the following factors.
- Linker length Linkers are chosen in a range of lengths to allow the spanning of a range of inter-ligand distances that encompass the distance preferable for a given divalent interaction.
- the preferred distance can be estimated rather precisely from high-resolution structural information of targets, typically enzymes and soluble receptor targets.
- targets typically enzymes and soluble receptor targets.
- high-resolution structural information is not available, one can make use of simple models to estimate the maximum distance between binding sites either on adjacent receptors or at different locations on the same receptor.
- preferred linker distances are 2-20 A, with more preferred linker distances of 3-12 A. In situations where two binding sites reside on separate (e.g.
- Linker geometry and rigidity The combination of ligand attachment site, linker length, linker geometry, and linker rigidity determine the possible ways in which the ligands of candidate multibinding compounds may be displayed in three dimensions and thereby presented to their binding sites.
- Linker geometry and rigidity are nominally determined by chemical composition and bonding pattern, which may be controlled and are systematically varied as another spanning function in a multibinding array. For example, linker geometry is varied by attaching two ligands to the ortho, meta, and para positions of a benzene ring, or in cis- or trans-arrangements at the 1,1- vs. 1,2- vs.
- Linker rigidity is varied by controlling the number and relative energies of different conformational states possible for the linker.
- a divalent compound bearing two ligands joined by 1,8-octyl linker has many more degrees of freedom, and is therefore less rigid than a compound in which the two ligands are attached to the 4,4' positions of a biphenyl linker.
- Linker physical properties are nominally determined by the chemical constitution and bonding patterns of the linker, and linker physical properties impact the overall physical properties of the candidate multibinding compounds in which they are included.
- a range of linker compositions is typically selected to provide a range of physical properties
- linker physical properties is made within the context of the physical properties of the ligands they join and, preferably, the goal is to generate molecules with favorable properties.
- linkers can be selected to avoid those that are too hydrophilic or too hydrophobic to be readily absorbed and/or distributed in vivo.
- Linker chemical functional groups are selected to be compatible with the chemistry chosen to connect linkers to the ligands and to impart the range of physical properties sufficient to span initial examination of this parameter.
- n being determined by the sum of the number of different attachment points for each ligand chosen
- m linkers by the process outlined above
- a library of (n ⁇ )m candidate divalent multibinding compounds is prepared which spans the relevant multibinding design parameters for a particular target. For example, an array generated from two ligands, one which has two attachment points (Al , A2) and one which has three attachment points (Bl, B2, B3) joined in all possible combinations provide for at least 15 possible combinations of multibinding compounds:
- the combinatorial library can employ solid phase chemistries well known in the art wherein the ligand and/or linker is attached to a solid support. Alternatively and preferably, the combinatorial library is prepared in the solution phase. After synthesis, candidate multibinding compounds are optionally purified before assaying for activity by, for example, chromatographic methods (e.g., HPLC).
- chromatographic methods e.g., HPLC
- In vitro efficacy such as for receptor agonists and antagonists, ion channel blockers, and antimicrobial activity are also determined.
- Pharmacological data including oral absorption, everted gut penetration, other pharmacokinetic parameters and efficacy data are determined in appropriate models. In this way, key structure-activity relationships are obtained for multibinding design parameters which are then used to direct future work.
- the members of the library which exhibit multibinding properties can be readily determined by conventional methods. First, those members which exhibit multibinding properties are identified by conventional methods as described above, including conventional assays (both in vitro and in vivo).
- each member of the library can be encrypted or tagged with appropriate information allowing determination of the structure of relevant members at a later time.
- each member of the library can be encrypted or tagged with appropriate information allowing determination of the structure of relevant members at a later time. See, for example, Dower, et al., International Patent Application Publication No. WO 93/06121; Brenner, et al., Proc. Natl. Acad. Sci., USA, 89:5181 (1992); Gallop, et al., U.S. Patent No. 5,846,839; each of which is incorporated herein by reference in its entirety.
- the structure of relevant multivalent compounds can also be determined from soluble and untagged libraries of candidate multivalent compounds by methods known in the art, such as those described by Hindsgaul, et al. , Canadian Patent Application No. 2,240,325 which was published on July 11, 1998. Such methods couple frontal affinity chromatography with mass spectroscopy to determine both the structure and relative binding affinities of candidate multibinding compounds to receptors.
- an optional component of the process is to ascertain one or more promising multibinding "lead” compounds as defined by particular relative ligand orientations, linker lengths, linker geometries, etc. Additional libraries can then be generated around these leads to provide for further information regarding structure to activity relationships. These arrays typically bear more focused variations in linker structure to further optimize target affinity and/or activity at the target (antagonism, partial agonism, etc.), and/or alter physical properties. By iterative redesign/analysis using the novel principles of multibinding design along with classical medicinal chemistry, biochemistry, and pharmacology approaches, one is able to prepare and identify optimal multibinding compounds that exhibit biological advantage towards their targets and as therapeutic agents.
- suitable divalent linkers include, by way of example only, those derived from dicarboxylic acids, disulfonylhalides, dialdehydes, dipseudohalides, diketones, dihalides, diisocyanates, diamines, diols, diboronates, mixtures of carboxylic acids, sulfonylhalides, aldehydes, ketones, halides, isocyanates, amines and diols.
- the carboxylic acid, sulfonylhalide, aldehyde, ketone, halide, isocyanate, amine and diol functional group is reacted with a complementary functionality on the ligand to form a covalent linkage.
- complementary functionality is well known in the art as illustrated in the following table, which is exemplary only:
- First Reactive Group Second Reactive Group Linkage hydroxyl isocyanate urethane amine epoxide ⁇ -hydroxyamine sulfonyl halide amine sulfonamide carboxyl ; acid amine amide hydroxyl alkyl/aryl halide ether aldehyde amine/NaCNBH 4 amine ketone amine/NaCNBH 4 amine amine isocyanate carbamate
- Exemplary linkers include the following linkers identified as X-1 through X-418 as set forth below in Table 1 : -71-
- Representative ligands for use in this invention include, by way of example, L-1 through L-14 as identified above.
- Combinations of ligands (L) and linkers (X) per this invention include, by way example only, homo- and hetero-dimers wherein a first ligand is selected from L-1 through L-14 above and the second ligand and linker is selected from the following:
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Abstract
Description
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CA002318286A CA2318286A1 (en) | 1998-06-08 | 1999-06-07 | Multibinding agents that modulate ppar.gamma. and rxr receptors |
AU45491/99A AU4549199A (en) | 1998-06-08 | 1999-06-07 | Multibinding agents that modulate ppargamma and rxr receptors |
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PCT/US1999/012727 WO1999064041A1 (en) | 1998-06-08 | 1999-06-07 | Multibinding agents that modulate nmda receptors |
PCT/US1999/012673 WO1999064038A1 (en) | 1998-06-08 | 1999-06-07 | Novel analgesic agents |
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PCT/US1999/012731 WO1999064000A1 (en) | 1998-06-08 | 1999-06-07 | Novel therapeutic agents that modulate neurokinin receptors |
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PCT/US1999/012730 WO1999063933A2 (en) | 1998-06-08 | 1999-06-07 | Multivalent agonists, partial agonists and antagonists of the gaba receptors |
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PCT/US1999/012728 WO1999064042A1 (en) | 1998-06-08 | 1999-06-07 | Novel therapeutic agents that modulate alpha-1a adrenergic receptors |
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PCT/US1999/012876 WO1999064052A1 (en) | 1998-06-08 | 1999-06-08 | Novel leukotriene receptor antagonists and their uses |
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PCT/US1999/012989 WO1999066944A1 (en) | 1998-06-08 | 1999-06-08 | Methods for identifying novel multimeric agents that modulate receptors |
PCT/US1999/012907 WO1999064053A1 (en) | 1998-06-08 | 1999-06-08 | β3-ADRENERGIC RECEPTOR AGONISTS |
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PCT/US1999/012727 WO1999064041A1 (en) | 1998-06-08 | 1999-06-07 | Multibinding agents that modulate nmda receptors |
PCT/US1999/012673 WO1999064038A1 (en) | 1998-06-08 | 1999-06-07 | Novel analgesic agents |
PCT/US1999/011804 WO1999064035A1 (en) | 1998-06-08 | 1999-06-07 | β2-ADRENERGIC RECEPTOR AGONISTS |
PCT/US1999/012782 WO1999063996A1 (en) | 1998-06-08 | 1999-06-07 | Multivalent agonists, partial agonists, inverse agonists and antagonists of the 5ht2 receptors |
PCT/US1999/012731 WO1999064000A1 (en) | 1998-06-08 | 1999-06-07 | Novel therapeutic agents that modulate neurokinin receptors |
PCT/US1999/011805 WO1999063930A2 (en) | 1998-06-08 | 1999-06-07 | Novel angiotensin receptor modulators and their uses |
PCT/US1999/012778 WO1999063993A1 (en) | 1998-06-08 | 1999-06-07 | Multivalent agonists, partial agonists, inverse agonists and antagonists of the d1 receptors |
PCT/US1999/012730 WO1999063933A2 (en) | 1998-06-08 | 1999-06-07 | Multivalent agonists, partial agonists and antagonists of the gaba receptors |
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PCT/US1999/012728 WO1999064042A1 (en) | 1998-06-08 | 1999-06-07 | Novel therapeutic agents that modulate alpha-1a adrenergic receptors |
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PCT/US1999/012626 WO1999063999A1 (en) | 1998-06-08 | 1999-06-08 | H1-histamine receptor antagonists |
PCT/US1999/012994 WO1999064055A1 (en) | 1998-06-08 | 1999-06-08 | Multivalent agonists, partial agonists, inverse agonists and antagonists of the 5ht4 receptors |
PCT/US1999/012995 WO1999063944A2 (en) | 1998-06-08 | 1999-06-08 | Novel therapeutic agents that modulate estrogen receptors |
PCT/US1999/012770 WO1999063936A2 (en) | 1998-06-08 | 1999-06-08 | Novel therapeutic agents that modulate endothelin receptors |
PCT/US1999/012989 WO1999066944A1 (en) | 1998-06-08 | 1999-06-08 | Methods for identifying novel multimeric agents that modulate receptors |
PCT/US1999/012907 WO1999064053A1 (en) | 1998-06-08 | 1999-06-08 | β3-ADRENERGIC RECEPTOR AGONISTS |
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