WO1999033995A1 - Plant galactose dehydrogenase - Google Patents
Plant galactose dehydrogenase Download PDFInfo
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- WO1999033995A1 WO1999033995A1 PCT/GB1998/003903 GB9803903W WO9933995A1 WO 1999033995 A1 WO1999033995 A1 WO 1999033995A1 GB 9803903 W GB9803903 W GB 9803903W WO 9933995 A1 WO9933995 A1 WO 9933995A1
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- galactose
- galactose dehydrogenase
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- C12N15/8241—Phenotypically and genetically modified plants via recombinant DNA technology
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- C12N15/79—Vectors or expression systems specially adapted for eukaryotic hosts
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- C12N15/8241—Phenotypically and genetically modified plants via recombinant DNA technology
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- C12N15/8245—Phenotypically and genetically modified plants via recombinant DNA technology with non-agronomic quality (output) traits, e.g. for industrial processing; Value added, non-agronomic traits involving biosynthetic or metabolic pathways, i.e. metabolic engineering, e.g. nicotine, caffeine involving modified carbohydrate or sugar alcohol metabolism, e.g. starch biosynthesis
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- C12N15/79—Vectors or expression systems specially adapted for eukaryotic hosts
- C12N15/82—Vectors or expression systems specially adapted for eukaryotic hosts for plant cells, e.g. plant artificial chromosomes (PACs)
- C12N15/8241—Phenotypically and genetically modified plants via recombinant DNA technology
- C12N15/8261—Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield
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- C12P17/00—Preparation of heterocyclic carbon compounds with only O, N, S, Se or Te as ring hetero atoms
- C12P17/02—Oxygen as only ring hetero atoms
- C12P17/04—Oxygen as only ring hetero atoms containing a five-membered hetero ring, e.g. griseofulvin, vitamin C
Definitions
- This invention relates to a previously unknown enzyme and its uses and in particular, though not exclusively, to an enzyme which catalyses the oxidation of L-galactose to L-galactonolactone in the pathway producing L-ascorbic acid
- This invention also relates to inhibitors or inactivators of such an enzyme, and to the production of transgenic plants with upregulated pathways producing L-ascorbic acid.
- L-ascorbic acid (“ascorbate”), commonly known as vitamin C, is a major metabolite in plants reaching concentrations of 1-5 mM in leaves and up to 25 mM in chloroplasts. It functions as an antioxidant and has putative roles in photosynthesis and transmembrane electron transport as well as in protecting plants against a variety of stressful conditions such as air pollutants, temperature extremes and drought. It has also been suggested that L-ascorbic acid plays a role in cell expansion and cell division.
- Plant-derived L-ascorbic acid is also the major source of vitamin C in the diet of humans and some animals (including other primates and guinea pigs), since they are unable to synthesise this essential antioxidant themselves.
- a lack of L-ascorbic acid in the diet can lead to collagen deficiency which results in the symptoms of scurvy.
- Sub-clinical scurvy is now a problem, particularly amongst those elderly who do not have a proper diet.
- L-galactono-l,4-lactone The most effective precursor of L-ascorbic acid in plants is L-galactono-l,4-lactone.
- a mitochondrial enzyme, L-galactono-l,4-lactone dehydrogenase has been isolated from a variety of plants (which facilitate this conversion) (Mapson, L. W. & Breslow, Biochem. J. 68, 395-406 (1958) and Oba, K., et al J. Biochem. 117, 120-124 (1995)).
- Mapson, L. W. & Breslow, Biochem. J. 68, 395-406 (1958) and Oba, K., et al J. Biochem. 117, 120-124 (1995) Mapson, L. W. & Breslow, Biochem. J. 68, 395-406 (1958) and Oba, K., et al J. Biochem. 117, 120-124 (1995)
- this compound has been disputed
- the inventors have unexpectedly determined that the production of L-ascorbate in plants occurs via an interconversion of the sugar nucleotides GDP-D-mannose and GDP-L-galactose.
- D-mannose and L-galactose have been found to be efficient precursors of cellular ascorbate in plants.
- the inventors have also purified a novel enzyme which catalyses the oxidation of L-galactose to L-galactonolactone without inversion of the carbon chain, and have subsequently demonstrated the ability of plants to convert GDP-D-mannose to L-galactose and L-galactonolactone.
- the newly-discovered pathway by which plants synthesise L-ascorbic acid is shown in Fig. 5.
- the GDP-sugar derivatives (GDP-D-mannose and GDP-L-galactose) are utilised by plants in the synthesis of cell wall polysaccharides and glycoproteins.
- transgenic higher organisms would provide food with enhanced levels of vitamin C for human consumption.
- L-ascorbate will allow further study of potential medical applications of the compound as well as provide an increased level of high quality, low cost L-ascorbate for use as vitamin C supplements to augment the human diet.
- transgenic microorganisms for large scale production of L-ascorbate by fermentation for purification and commercial exploitation.
- the inventors have developed novel compounds which act as plant herbicides by inhibiting or inactivating the L-galactose dehydrogenase enzyme.
- Herbicides are compounds which kill or injure plants by a variety of mechanisms and are used in agriculture and horticulture to control weeds.
- This invention provides a new class of herbicides of great utility by virtue of their low toxicity to animals.
- Chemical compounds which inhibit or inactivate L-galactose dehydrogenase can be synthesised and used as herbicides.
- the inventors have also developed transgenic plants which exhibit resistance to such herbicidal action.
- a first aspect of the invention provides an isolated enzyme L galactose dehydrogenase (formal name: L-galactono-l,4-lactone dehydrogenase (L-galactose:NADP(P) + oxidoreductase).
- This aspect of the invention also provides a polypeptide which comprises at least a portion of the amino acid sequence of SEQ 1, or equivalents to that sequence, or to portions of that sequence, which catalyse the conversion of L-galactose to L-galatonolactone by virtue of the degeneracy of the genetic code.
- polypeptide used herein embraces entities described in the literature and familiar to the skilled addressee as, for example, proteins, polypeptides .and peptides.
- the polypeptide is isolated L-galactose dehydrogenase.
- the L-galactose dehydrogenase is NAD(P)-dependent.
- the catalytic conversion is an oxidation reaction.
- the oxidation reaction involves oxidation at Cl.
- the conversion occurs in plants.
- a second aspect of the invention provides a DNA sequence encoding a polypeptide according to a first aspect of the invention.
- a third aspect of the invention provides an organism engineered to express the polypeptide according to a first aspect of the invention, by incorporation of the DNA sequence according to a second aspect of the invention within a gene expression control system.
- the whole or part of the organism overexpresses the polypeptide.
- the organism is a plant.
- plant used herein includes algae.
- the plant is selected from Arabidopsis thaliana, Lycopersicon esculentum, Lycopersicon tuberosum.
- the organism is a bacterium, or a fungi such as a yeast, especially Saccharomyces species, or an animal. Where the organism is an animal, it is preferably a mammal.
- the DNA sequence encodes a polypeptide conferring increased tolerance to environmental stresses including those causing oxidative stress to an organism engineered to express that polypeptide.
- a fourth aspect of the invention provides a probe wherein the probe comprises at least a portion of a polypeptide according to a first aspect of the invention.
- the probe may be used to locate similar enzymes or the same enzyme in other species.
- a fifth aspect of the invention provides a probe comprising at least a portion of the DNA sequence according to the second aspect of the invention, and equivalents to that sequence or to portions of that sequence, which encode a polypeptide according to a first aspect of the invention.
- the probe may also comprise RNA equivalent to such a DNA sequence.
- Either nucleotide probe may be used to locate similar enzymes ot the same enzyme in other species.
- a sixth aspect of the invention provides the production of the polypeptide according to a first aspect of the invention by chemical or biological means.
- An seventh aspect of the invention provides diagnostic tests, assays, or monitoring methods using all or part of a polypeptide according to a first aspect of the invention.
- An eighth aspect of the invention provides diagnostic tests, assays, or monitoring methods using a probe according to a fourth and fifth aspect of the invention.
- the diagnostic tests, assays, or monitoring methods comprise microbiological, animal cell or biodiagnostic tests, assays and monitoring methods.
- the biodiagnostic tests include assays using whole or partial cell extracts or other fluids such as urine or saliva where intact cells are not involved, e.g a specific assay for L-galactose.
- a ninth aspect of the invention provides a multi-enzyme pathway, or method of producing L-ascorbic acid or a precursor thereof, wherein one of the steps of the pathway is catalysed by L-galactose dehydrogenase or a polypeptide according to a first aspect of the invention.
- the pathway includes any or all of the enzymes .hexokinase, glucose (hexose)-phospate isomerase, phosphomannose isomerase,phosphomannose mutase,GDP-D-mannose pyrophosphorylase, GDP-D-mannose-3,5-epimerase, GDP L-galactose pyrophosphorylase, GDP-L-galactose phosphorylase, L-galactose- 1 -phosphate phosphatase, L-galactose dehydrogenase, and L galactono 1-4-lactone dehydrogenase.
- the pathway may provided in vitro or in vivo.
- a tenth aspect of the invention provides ascorbic acid produced by a pathway according to a ninth aspect of the invention.
- a eleventh aspect of the invention provides a compound produced as an intermediate of a pathway according to a ninth aspect of the invention.
- a twelfth aspect of the invention provides a compound obtained from a precursor compound wherein the precursor compound is produced by a pathway according to a ninth aspect of the invention.
- a thirteenth aspect of the invention provides a dietary supplement comprising ascorbic acid according to an eleventh aspect of the invention.
- a fourteenth aspect of the invention provides an organism wherein the whole or any part of the organism contains increased levels of ascorbic acid according to an eleventh aspect of the invention.
- the organism is a plant.
- the plant includes Arabidopsis thaliana, Lycopersicon esculentum and Lycopersicon tuberosum and Saccharomyces species.
- SEQ 1 shows the partial polypeptide sequence of L-galactose dehydrogenase from pea seedlings (Pisum sativum).
- Fig 1. is a graph showing ascorbate production in barley leaf segments exposed to different substrates
- Fig. 2 is a graph, showing the kinetic characteristics of L-galactose dehydrogenase partially purified from pea embryonic axes by ammonium sulphate precipitation and hydrophobic interaction chromatography;
- Fig. 3 is a series of radiochromatograms showing the level of radiolabel incorporation into carbohydrates
- Fig. 4 is a graph showing the level of radioactivity in ascorbic acid recovered from A. thaliana leaves;
- Fig. 6 is a set of graphs showing the inhibitory effect of L-galactano-l,4-lactone on L-galactose dehydrogenase.
- Fig. 7 shows an SDS-PAGE analysis of 1 ml fractions eluting from a Superose 12 gel filtration column.
- L-galactono-1 ,4-lactone was supplied to slices of primary leaves of 1 week old barley seedlings ( Hordeum vulgar -e cv. Golden Promise). This resulted in a rapid and substantial increase in the foliar ascorbate concentration, similar to that induced by L-galactono-l,4-lactone (Fig. 1).
- L-galactose feeding also dramatically increased ascorbate concentration in Arabidopsis thaliana leaves and in embryonic axes of germinating pea seedlings (Pisum sativum cv. Meteor).
- the identity of the product as L-ascorbate was confirmed by its reactivity with ascorbate oxidase, its ability to reduce acidic DCPIP and by co-chromatography with L-ascorbate using TLC and HPLC (Chen, YT et al, Biochem. J., 55, 821-23 (1953); Conklin, PL et al, Plant Physiol, 115, 1277-1285 (1997)).
- L-galactose was measured by gas chromatography of its trimethylsiyl derivative (Andrews, M.A. Carbohydrate Research 194: 1-19 (1989)
- the L-galactose was undetectable one hour after removal of the external supply showing that it is rapidly and efficiently metabolised.
- L-galactose is therefore an effective precursor of L-ascorbate in plants. Oxidation of L-galactose at Cl would result in the production of L-galactonolactone and the presence of this activity was investigated in cell-free extracts of A. thaliana leaves and pea embryonic axes. Both these supported L-galactose-dependent NAD and NADP reduction.
- the enzyme activity from pea embryonic axes has been purified as follows:
- L-Galactose dehydrogenase was extracted from shoots of pea seedlings which had been germinated in the dark for 6 days.
- the shoots were homogenised in 50 mM Tris-HCl pH 7.5, 1 mM ethylenediaminetetraacetic acid (EDTA), 2 mM dithiothreitol (DTT) and 5% (v/v) glycerol (0.5g shoots/ml).
- the homogenate was strained through cheesecloth and then centrifuged at 26,000 g for 20 minutes at 4°C. The supernatant was brought to 50% saturation with ammonium sulphate (29Jg/100ml) and centrifuged as before.
- the supernatant was then brought to 70 % saturation with ammonium sulphate (12.5g/100 ml) and centrifuged as before.
- the pellet which contained L-galactose dehydrogenase activity, was resuspended in 50 mM Tris-HCl pH 7.5, 1 mM EDTA, 2 mM DTT and 20% (v/v) glycerol.
- the sample was loaded onto a chromatography column (300 x 7 mm) packed with Phenyl Sepharose® (Pharmacia) previously equilibrated with 25 mM Tris-HCl pH 7.5, 1 mM EDTA, 1 mM DTT and 1 M (NH 4 ) 2 SO 4 .
- the proteins were eluted with a gradient of 1-0 M (NH 4 ) 2 SO in equilibration buffer and those fractions containing L-galactose dehydrogenase activity were pooled.
- This sample was then dialysed for 16 h against 25 mM Tris-HCl pH 7.5, 1 mM EDTA and 1 mM DTT and then loaded onto a column (650 x 16 mm) packed with an anion exchange gel (DEAE-Sephacel®, Pharmacia) previously equilibrated with 25 mM Tris-HCl pH 8.5, 1 mM EDTA and 1 mM DTT.
- the column was eluted with a gradient of KC1 (0 - 0.6 M) in the equilibration buffer. Fractions containing L-galactose dehydrogenase activity were pooled.
- This sample was then dialysed for 16 h against 25 mM Tris-HCl pH 7.5, 1 mM EDTA and 1 mM DTT.
- the dialysed sample was then loaded onto a column (300 x 17 mm) packed with Cibacron Blue Sepharose® (Pharmacia), previously equilibrated with 25 mM Tris-HCl pH 7.5, 1 mM EDTA and 1 mM DTT.
- the column was washed with a gradient of 10 mM nicotinamide adenine dinucleotide (NAD) in 25 mM Tris-HCl pH 7.5 - 10 mM NAD in 25 mM Tris-HCl pH 8.5.
- NAD nicotinamide adenine dinucleotide
- the active fractions were then concentrated by centrifugation through a membrane (Centricon 30, Amicon Corporation).
- the concentrated sample was loaded onto a gel filtration column (Superose 12®, 450 x 25mm, Pharmacia) previously equilibrated with 25 mM Tris-HCl pH 7.5, 1 mM EDTA and 1 mM DTT.
- the proteins were eluted with the same buffer.
- the volume of buffer required to elute L-galactose dehydrogenase activity was determined. This volume was compared with the elution volumes of standard proteins of known molecular mass. From this comparison the relative molecular mass (Mr) of L-galactose dehydrogenase was determined to be 152,000.
- the fractions from the gel filtration column containing L-galactose dehydrogenase activity were then concentrated by adding acetone to the sample to give a final acetone concentration of 80% (v/v). After leaving at -20°C for 1 h the precipitated protein was pelleted by centrifugation at 12,000g for 10 minutes. The protein was then redissolved in water and mixed with an equal volume of double-strength Laemmli buffer (Hames and
- Mr of the denatured polypeptides was determined by comparing their migration distance with protein standards of known Mr. It was determined that a polypeptide of Mr 39,800 was present in the fractions from the gel filtration column which contained L-galactose dehydrogenase activity. This was quantitatively the major protein in these fractions and its amount, determined by intensity of staining, varied in exact proportion to L-galactose dehydrogenase activity (See Fig. 7 A, B and C). In Fig.
- L-galactose dehydrogenase is therefore a homotetrameric protein of Mr 152,000 consisting of 4 subunits each having an Mr 39,800. 3. Determination of the N-terminal sequence of pea L-galactose dehydrogenase
- a BLASTP search was carried out using the partial peptide sequence obtained (Altshul, Stephen F. et al, (1997), Nucleic Acid Res. 25: 3389-3402).
- the partial peptide sequence was found to have 72 % identity with an Arabidopsis thaliana putative peptide sequence of unknown function (Accession No. 3549669).
- the 72 % identity was observed in respect of amino acids 5 to 22 of the Arabidopsis thaliana sequence.
- this Arabidopsis thaliana putative protein is, in fact, an L-galatose dehydrogenase enzyme.
- the enzyme was assayed for L-galactose dehydrogenase activity by following NAD(P)H formation at 340 nm in 50 mM tris-HCL buffer, at pH 7.5 with 0J mM NAD(P) and various L-galactose concentrations.
- the enzyme was shown to have a preference for NAD and shows very little activity with a range of other sugars (D-galactose, D-glucose, D-mannose, L-fucose and D-arabinose).
- the identity of the reaction product was determined by a lactone assay and gas chromatography-mass spectrometry (GC-MS) as follows:
- the reaction product from the L-galactose dehydrogenase assay was adjusted to pH 9.5 with NaOH solution and left for 2h at room temperature to delactonize any aldonolactones and uronolactones present. It was then loaded onto a column of Dowex 1-formate (anion exchange resin). The column was eluted sequentially with water and 0.1 M formic acid. The formic acid fraction was heated at 100°C for 10 minutes and then dried under an air stream to relactonize any aldonic or uronic acids present. The dried samples were then coverted to trimethylsilyl (TMS) derivatives (Andrews, 1989 supra).
- TMS trimethylsilyl
- the derivatives were separated by capillary gas chromatography (GC) on a Hewlett Packard Ultra 2 column (50 m, 0.37 mm i.d., crosslinked 5% Phe Me silicone, 0J7 :m film thickness) and detected with a flame ionization detector.
- the temperature programme was 145 °C for 10 min, increased to 170°C at 5° min "1 , held for 10 min, then increased to 305°C at 25° min '1 and held for 5 min.
- the reaction product produced one peak with identical relative retention time to pure L-galactono-l,4-lactone (using D-arabitol as the internal standard).
- the product from the reaction mixture showed a positive response with the hydroxylamine assay for lactones, with approximately one to one stoichiometry between NADH formation and lactone production (in L-galactono-l,4-lactone equivalents).
- L-galactono-1 ,5-lactone which is relatively unstable and spontaneously converts to the 1,4 form.
- the K m for L-galactose was 0.3 mM (Fig. 2).
- the enzyme was able to oxidise L-sorbosone, another suggested intermediate in plant ascorbate biosynthesis (Saito, K, et al. Plant Physiol. 94, 1496-1500 (1990)), but with very low affinity (Fig. 2).
- the product would be L-ascorbic acid, which could explain why labelled L-sorbosone is converted to ascorbate (Saito, K, et al. Plant Physiol. 94, 1496-1500 (1990)).
- L-Sorbosone has the same configuration as L-galactose, apart from the keto group at C2 and hydroxyl group at C3.
- L-galactose dehydrogenase capable of forming L-galactono-1, 4-lactone from L-galactose with high affinity and specificity.
- dehydrogenases which oxidise Cl of non-phosphorylated aldoses are: D-galactose dehydrogenase in Pseudomonas fluorescens (Maier, E. & Kurtz, G. D Methods in Enzymology 89, 176-181 (1982)); L-fucose dehydrogenase in mammals (Schachter, H. et al J. Biol. Chem 244, 4785-4792 (1969)) and D-arabinose dehydrogenase in Candida albicans (Kim S-T et al Biochem. BiophysActa, 1297, 1-8 (1996)).
- L-galactose occurs in non-cellulosic cell wall polymers indicating that plants are able to synthesise this compound (Baydoun EAH & Fry SC, J. Plant Physiol. 132 484-490 (1988)).
- the L-galactose residues in the cell wall are derived from GDP-L-galactose, a nucleotide sugar formed via GDP-D-mannose-3,-5-epimerase activity, which has been reported in Chlorella (Barber, G. A. /. Biol. Chem. 254, 7600-7603 (1979)) and a number of higher plants (Barber, G. A. Arch. Biochem Biophys, 147, 619-623 (1971)).
- GDP-D-mannose-3,5-epimerase activity was detected by homogenisation of tissue in 100 mM tris-HCl buffer pH 7.6 containing 5 mM DTT, 1 mM EDTA and 1 % polyvinylpolypyrro-idone before centrifugation at 5000 rpm (12,000g) for 20 minutes. The supernatant was then either used directly as a crude extract or precipitated with 90% saturation ammonium sulphate and then desalted with Sephadex G-25 (Pharmacia PD10 column). Crude extracts or precipitates were incubated with GDP-D-[U 14 C]mannose in 25mM Tris-HCl pH 8.0 containing 2mM EDTA at 25°C.
- reaction products were passed through a strong anion exchange (SAX) column.
- Neutral fractions were deionised with a strong cation exchange (SCX) column prior to thin layer chromatography (TLC).
- GDP-sugars were eluted from the SAX column with 2M formic acid and then hydrolysed with 2M trifluoroacetic acid at 80° C for 1 hour prior to TLC to produce free carbohydrates.
- Carbohydrates were separated by TLC on silica plates (Whatman) impregnated with 0.3M sodium dihydrogen orthophosphate, using an acetone/butanol/water (8:1:1 v/v) solvent (Ghebreqzabher M. et al. J.
- the inventors were able to detect GDP-D-mannose-3,5-epimerase activity using both crude extracts and protein precipitates from pea embryonic axes (Fig 3) and protein precipitates from A. th ⁇ li ⁇ n ⁇ leaves.
- free L-galactose would be necessary for L-galactose dehydrogenase.
- Free L-galactose has not been detected in plant extracts, although the majority of chromatographic techniques do not differentiate between the D- and L isomers of this sugar. Nevertheless it has been possible to demonstrate the substantial production of free L-galactose from the crude extracts of pea embryonic axes (Fig. 3). Since free D- -mannose was not formed in appreciable quantities (Fig.
- Leaf tissue which had been fed the radiolabelled precursor via the petiole was frozen at -70°C immediately after the incubation period.
- Leaf tissue was then ground to powder in a mortar and pestle containing liquid nitrogen. Before the powder thawed, 1ml of 5% perchloric acid containing ImM EDTA was added and the tissue was thoroughly homogenised. The extract was then centrifuged at 12,000g. for 2 minutes and the supernatant collected. 2.5 ⁇ l of methyl orange were added as an indicator and the solution was neutralised with the addition of 5M KCO 3 (approx 60 ⁇ l). The extract was allowed to stand for 10 minutes before centrifugation at 12000g. for 1 minute. The supernatant was collected, mixed with an equal volume of 10% dithiothreitol and allowed to stand for 10 minutes to facilitate the reduction of any oxidised ascorbate.
- the extract was then passed through a SAX column to which acidic compounds bind (such as ascorbate).
- acidic compounds bind such as ascorbate
- the column was then rinsed with 5ml of deionised water before the ascorbic acid was eluted using 5ml of 60mM formic acid. Any further acidic compounds were later eluted using 5ml of 2M formic acid.
- the 60mM fraction was frozen immediately and freeze dried.
- the ascorbic acid was then reconstituted in 200 ⁇ l of lOmM formic acid and 100 ⁇ l was injected onto the HPLC system. Ascorbic acid was detected by its UN absorbance at 210nm. Radioactivity in ascorbic acid was measured by fraction collection of the eluent followed by liquid scintillation counting.
- thaliana leaves after the petiolar feeding of [U- 14 C]-D-glucose (open symbols) and [U- 14 C]-D-mannose (closed symbols) for 4 hours.
- the graph indicates the proportion of total radioactivity present in the eluent fractions collected during HPLC analysis of ascorbate.
- the retention time of non-labelled ascorbate is indicated with an arrow.
- the significant peak eluting prior to ascorbate is thought to be dehydroascorbate.
- the proportion of radio label from D-glucose incorporated into ascorbate is usually low, around 1% or less. In A. thaliana leaves supplied with D-[U- 14 C]mannose, incorporation of label into ascorbate was found to be 10% (Fig. 4).
- microorganisms including microalgae, bacteria and yeast
- the activity of enzymes which catalyse reactions that in the ascorbate pathway is increased and or the activity of enzymes which catalyse reactions that branch from the ascorbate pathway is decreased to produce significantly high yields of ascorbate by fermentation methods.
- modulations in the activity of enzymes is achieved by the use of microorganisms which are genetically modified.
- a genetically modified microorganism such as Escherichia coli, has a genome which is modified (i.e., mutated or changed) from its normal (i.e., wild- type or naturally occurring) form.
- Genetic modification of a microorganism can be accomplished using classical strain development and/or molecular genetic techniques. Such techniques are generally disclosed, for example, in Sambrook et al., 1989, Molecular Cloning: A Laboratory Manual, Cold Spring Harbor Labs Press. The reference Sambrook et al., ibid., is incorporated by reference herein in its entirety. Additionally, techniques for genetic modification of a microorganism are described in detail in the literature.
- a genetically modified microorganism can include a natural genetic variant as well as a microorganism in which nucleic acid molecules have been inserted, deleted or modified (i.e., mutated; e.g., by insertion, deletion, substitution, and/or inversion of nucleotides), in such a manner that such modifications provide the desired effect within the microorganism.
- a genetically modified microorganism includes a microorganism that has been modified using recombinant technology.
- genetic modifications which result in a decrease in gene expression, in the function of the gene, or in the function of the gene product (i.e., the protein encoded by the gene) can be referred to as inactivation (complete or partial), deletion, interruption, blockage or down-regulation of a gene.
- a genetic modification in a gene which results in a decrease in the function of the protein encoded by such gene can be the result of a complete deletion of the gene (i.e., the gene does not exist, and therefore the protein does not exist), a mutation in the gene which results in incomplete or no translation of the protein (e.g., the protein is not expressed), or a mutation in the gene which decreases or abolishes the natural function of the protein (e.g., a protein is expressed which has decreased or no enzymatic activity or action).
- Genetic modifications which result in an increase in gene expression or function can be referred to as amplification, overproduction, overexpression, activation, enhancement, addition, or up-regulation of a gene.
- a genetic modification of a microorganism increases the action of a protein involved in an ascorbate metabolic pathway or decreases the action of a protein involved in a pathway competing with the ascorbate metabolic pathway according to the present invention.
- a genetic modification includes any type of modification and specifically includes modifications made by recombinant technology and by classical mutagenesis.
- a microorganism of the present invention has a genetic modification that decreases the action of any enzyme catalyzing the conversion of GDP-D-mannose other than further along in the ascorbate pathway described herein.
- GDP-D-mannose is converted to GDP-D-mannuronic acid (by GDP-D-mannose dehydrogenase), GDP-D-rhamnose, GDP-L-fucose and other compounds which are precursors of polysaccharides.
- GDP-D-mannose dehydrogenase GDP-D-mannose dehydrogenase
- GDP-D-rhamnose GDP-L-fucose
- other compounds which are precursors of polysaccharides.
- reference to decreasing the action (or activity) of an enzyme refers to any genetic modification in the microorganism in question which results in decreased functionality of the enzymes and includes higher activity of the enzymes (e.g., specific activity or in vivo enzymatic activity), increased inhibition or degradation of the enzymes and underexpression of the enzymes.
- gene copy number can be decreased
- expression levels can be decreased by use of a promoter that gives lower levels of expression than that of the native promoter, or a gene can be altered by genetic engineering or classical mutagenesis to decrease the action of an enzyme.
- the action of an enzyme of the present invention can be decreased by blocking or reducing the production of the enzyme, reducing enzyme activity, or inhibiting the activity of the enzyme.
- Blocking or reducing the production of an enzyme can include placing the gene encoding the enzyme under the control of a promoter that requires the presence of an inducing compound in the growth medium. By establishing conditions such that the inducer becomes depleted from the medium, the expression of the gene encoding the enzyme (and therefore, of enzyme synthesis) could be turned off. Blocking or reducing the activity of an enzyme could also include using an excision technology approach similar to that described in U.S. Patent No. 4,743,546, incorporated herein by reference. To use this approach, the gene encoding the enzyme of interest is cloned between specific genetic sequences that allow specific, controlled excision of the gene from the genome. Excision could be prompted by, for example, a shift in the cultivation temperature of the culture, as in U.S. Patent No. 4,743,546, or by some other physical or nutritional signal.
- a microorganism of the present invention has a genetic modification that increases the action of any enzyme catalyzing the conversion of precursors to GDP-D-mannose and GDP-D-mannose further along in the ascorbate pathway described herein.
- any enzyme catalyzing the conversion of precursors to GDP-D-mannose and GDP-D-mannose further along in the ascorbate pathway described herein.
- the action of one or more of the six enzymes can be increased as discussed herein.
- mannosyltransferase has previously been identified and cloned. This gene, contained in a vector in antisense orientation, can then beused to genetically transform a plant using established technology (Miki, I.L.A and Iyer, V.N (1997). Plant Metabolism, ed. Dennis, D.H. et al., pp. 561-579, Longman). The resulting plant has reduced mannosyltransferase activity, and therefore a higher level of diversion of GDP-mannose to ascorbic acid synthesis. Targeting expression of the antisense gene to specific tissues, for example fruits (using gene promo tors known to drive gene expression in these specific tissues), will provide increased ascorbate concentration in these specific tissues.
- the gene encoding the enzyme of the invention can be cloned by using the peptide sequence information to design oligonucleotides which can be used to probe restricted genomic digests, followed by single colony blotting using a labelled oligonucleotide probe.
- crop plants with resistance to such herbicides can be produced by modifying the DNA sequence of the gene encoding L-galactose dehydrogenase (for example, by using random or site-directed mutagenesis so that the modified enzyme is no longer inhibited by its specific herbicide.
- the modified gene is then introduced into any suitable crop plant by the standard techniques employed by those skilled in the art for production of transgenic plants.
- the resulting transgenic plant will be resistant to herbicides targeted to L-galactose dehydrogenase.
- L-galactose dehydrogenase as a key enzyme in ascorbate biosynthesis has enabled the isolation, purification and in vitro assay of the enzyme as previously described.
- the inventors have synthesised inhibitors which resembles the substrate (L-galactose) and which binds to the active site of L-galactose dehydrogenase.
- An example of such an inhibitor is L- galactono -1,4-lactone, the natural product of the reaction, which inhibits the activity of the enzyme in an uncompetitive manner (Fig. 6).
- L-Galactose dehydrogenase from pea embryonic axes is purified as previously described.
- the enzyme is assayed for L-galactose dehydrogenase activity by following NAD(P)H formation at 340 nm in 50 mM tris-HCL buffer, at pH 7.5 with 0.1 mM NAD(P).
- a plant with resistance to herbicides targetted to L-galactose dehydrogenase can be produced by modifying the DNA sequence of the gene encoding L-galactose dehydrogenase (for example, by using random or site-directed mutagenesis (Directed Mutagenesis. A Practical Approach. Ed. M.J. McPherson, IRL Press, Oxford, 1991)) so that the modified enzyme is no longer inhibited by its specific herbicide.
- the modified gene is then introduced into, and expressed in, any suitable crop plant by the standard techniques employed by those skilled in the art (e.g.
- transgenic plants will be resistant to herbicides targeted to L-galactose dehydrogenase.
- target gene sequence into genetic vectors capable of directing the expression, preferably at high levels, of the target polypeptide.
- a polypeptide would comprise the enzyme L-galactose dehydrogenase, or other ascorbic acid biosynthesis pathway enzymes.
- such a vector is commonly known as pPB 1121.
- Another is pGPTV-kan.
- the novel nucleotide coding sequence of the enzyme L-galactose dehydrogenase or other pathway enzymes may be inserted via prior excision of the beta glucuronidase reporter gene, such that the L-galactose dehydrogenase or other pathway enzymes gene becomes transcriptionally fused to a functional promoter gene, in this case the 35Spromoter of CaMV which will direct enzyme synthesis in most organs of the plant.
- Such genetic constructs are next transferred to the Agrobacterium component of the vector system.
- a preferred example of this is the Agrobacterium strain LBA4404 which is appropriate for the transformation of solanacious species like tomato and potato.
- DNA of the genetic construct of pPBI121 or pGPTV-kan having been passaged and amplified in E. coli is added to a 37°C culture of competent Agrobacterium cells prepared via preculture in calcium chloride, freezing in liquid nitrogen, holding at -70°C and thawing.
- the ability to transfer the novel genetic construct to plants using the Agrobacterium strain constructed above is dependent upon a process known to those skilled in the art as co-cultivation, whereby the Agrobacterium strain is cultured in situ with tissue explants of the chosen plant species. Thereafter, the Agrobacterium is el-iminated by treatment (counterselection) with an antibiotic, and transformed plant tissues are selected by means of a second antibiotic such as kanamycin which is lethal to untransformed tissues. Transformed plant tissues are induced to redifferentiate shoots and roots by established tissue culture methods depending on the plant species involved. Transformed plants thus recovered from the TO generation are tested for ability to produce altered levels of enzyme L-galactose hydrogenase or other pathway enzymes.
- Tl seed population which is segregating for the new trait.
- Individual plants grown from Tl seed which are null (azygous), monozygous or dizygous for the novel trait may be identified by conventional PCR methodology. Such plants are then used to demonstrate that monozygous or dizygous plants are capable of producing more ascorbic acid than the azygous control.
- Tomato seeds (variety Ailsa craig) are first washed in 70% ethanol and then held for sterilization in 10% Domestos for 3 hours before final rinsing and overnight steeping in sterile water at 28°C. Seeds are then germinated in sterile transparent tubs containing germination medium, at 25°C and 16/24 hours photoperiod. Cotyledonary leaves are ready for transformation after 7-10 days and are prepared for transformation by careful transverse cutting so as to yield 2 segments of 0.5-1.0 cm per cotyledon. Explants are pre-incubated for 8 hours on sterile filter papers on a feederlayer of cultured tobacco cells.
- a culture of the said Agrobacterium strain is resuspended in MS medium plus 3% sucrose to an OD590 of 0.4-0.5 and the explants are immersed in this before being returned to the feeder layers and left to co-cultivate for 40 hours.
- Explants are then transferred to the surface of an agar selection and counterselection medium containing cefataxine at 500 g/ml (counterselection against Agrobacterium) and kanamycin at 100 g/ml (selection of transformed plant cells) in petri dishes. Explants are thus cultured and transferred to fresh medium at two weekly intervals. As shooting commences the explants are transferred to glass culture vessels and as the shoots expand they are dissected from the original plant and placed on rooting medium containing half the original levels of the antibiotic selections. Shooted and rooted plantlets are grown on and transferred to soil or other growing media following standard horticultural methods with care taken to provide humid conditions during hardening.
- Such plants once cultured, possess increased levels of ascorbic acid in their tissues.
- This over-production of ascorbic acid may provide an increase in plant yield under stressful conditions.
- Such plants with elevated levels of ascorbate may also produce fruit or vegetables of increased nutritional quality due to the increased intracellular level of ascorbic acid.
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Abstract
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Priority Applications (4)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
EP98962628A EP1042486A1 (en) | 1997-12-23 | 1998-12-23 | Plant galactose dehydrogenase |
JP2000526651A JP2002508155A (en) | 1997-12-23 | 1998-12-23 | Plant galactose dehydrogenase |
CA002316990A CA2316990A1 (en) | 1997-12-23 | 1998-12-23 | Plant galactose dehydrogenase |
AU17752/99A AU1775299A (en) | 1997-12-23 | 1998-12-23 | Plant galactose dehydrogenase |
Applications Claiming Priority (6)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
GBGB9727255.3A GB9727255D0 (en) | 1997-12-23 | 1997-12-23 | Enzyme |
GB9727255.3 | 1997-12-23 | ||
GB9807360.4 | 1998-04-07 | ||
GB9807358.8 | 1998-04-07 | ||
GBGB9807360.4A GB9807360D0 (en) | 1998-04-07 | 1998-04-07 | Genetic manipulation of the vitamin c content of plants |
GBGB9807358.8A GB9807358D0 (en) | 1998-04-07 | 1998-04-07 | A plant enzyme as a herbicide target |
Publications (1)
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WO1999033995A1 true WO1999033995A1 (en) | 1999-07-08 |
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PCT/GB1998/003903 WO1999033995A1 (en) | 1997-12-23 | 1998-12-23 | Plant galactose dehydrogenase |
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EP (1) | EP1042486A1 (en) |
JP (1) | JP2002508155A (en) |
AU (1) | AU1775299A (en) |
CA (1) | CA2316990A1 (en) |
WO (1) | WO1999033995A1 (en) |
Cited By (8)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
WO1999064618A1 (en) * | 1998-06-08 | 1999-12-16 | Dcv, Inc., Doing Business As Bio-Technical Resources | Vitamin c production in microorganisms and plants |
WO2001007634A1 (en) * | 1999-07-26 | 2001-02-01 | Unilever Plc | Method for increasing vitamin c content of plants |
WO2001068686A1 (en) * | 2000-02-29 | 2001-09-20 | Fudan University | A novel polypeptide-human mannosephosphate isomerase 16 and the polynucleotide encoding said polypeptide |
JP2001258579A (en) * | 2000-01-13 | 2001-09-25 | Inst Of Physical & Chemical Res | Transgenic plant using neoxantin-cleaving enzyme gene |
WO2001072974A2 (en) * | 2000-03-29 | 2001-10-04 | Ascorbex Limited | L-galactose dehydrogenase from arabidopsis thaliana, and uses thereof |
WO2002010425A2 (en) * | 2000-08-02 | 2002-02-07 | Biopolo S.C.A.R.L. | Ascorbic acid production from yeasts |
WO2002103001A1 (en) * | 2001-06-15 | 2002-12-27 | Vlaams Interuniversitair Instituut Voor Biotechnologie Vzw | Gdp-mannose-3',5'-epimerase and methods of use thereof |
JP2008031177A (en) * | 1999-09-30 | 2008-02-14 | Loders Croklaan Bv | Composition containing pinolenic acid and its use as health component |
Families Citing this family (2)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
JP4934425B2 (en) * | 2004-05-24 | 2012-05-16 | 国立大学法人 香川大学 | Use of rare sugars consisting of D-psicose for plants |
JP4931036B2 (en) * | 2004-05-24 | 2012-05-16 | 国立大学法人 香川大学 | Plant growth regulators with rare sugars |
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WO1993011244A1 (en) * | 1991-11-29 | 1993-06-10 | Weyerhaeuser Company | Cyclic di-guanylate metabolic enzymes |
WO1997004100A2 (en) * | 1995-07-17 | 1997-02-06 | Fraunhofer-Gesellschaft zur Förderung der angewandten Forschung e.V. | L-ascorbic acid synthesis by l-galactonatoxidoreductase |
-
1998
- 1998-12-23 AU AU17752/99A patent/AU1775299A/en not_active Abandoned
- 1998-12-23 WO PCT/GB1998/003903 patent/WO1999033995A1/en not_active Application Discontinuation
- 1998-12-23 JP JP2000526651A patent/JP2002508155A/en active Pending
- 1998-12-23 CA CA002316990A patent/CA2316990A1/en not_active Abandoned
- 1998-12-23 EP EP98962628A patent/EP1042486A1/en not_active Withdrawn
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WO1993011244A1 (en) * | 1991-11-29 | 1993-06-10 | Weyerhaeuser Company | Cyclic di-guanylate metabolic enzymes |
WO1997004100A2 (en) * | 1995-07-17 | 1997-02-06 | Fraunhofer-Gesellschaft zur Förderung der angewandten Forschung e.V. | L-ascorbic acid synthesis by l-galactonatoxidoreductase |
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Cited By (16)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
WO1999064618A1 (en) * | 1998-06-08 | 1999-12-16 | Dcv, Inc., Doing Business As Bio-Technical Resources | Vitamin c production in microorganisms and plants |
WO2001007634A1 (en) * | 1999-07-26 | 2001-02-01 | Unilever Plc | Method for increasing vitamin c content of plants |
JP2008031177A (en) * | 1999-09-30 | 2008-02-14 | Loders Croklaan Bv | Composition containing pinolenic acid and its use as health component |
JP2001258579A (en) * | 2000-01-13 | 2001-09-25 | Inst Of Physical & Chemical Res | Transgenic plant using neoxantin-cleaving enzyme gene |
JP4621361B2 (en) * | 2000-01-13 | 2011-01-26 | 独立行政法人理化学研究所 | Transgenic plants using neoxanthin cleaving enzyme gene |
WO2001068686A1 (en) * | 2000-02-29 | 2001-09-20 | Fudan University | A novel polypeptide-human mannosephosphate isomerase 16 and the polynucleotide encoding said polypeptide |
WO2001072974A2 (en) * | 2000-03-29 | 2001-10-04 | Ascorbex Limited | L-galactose dehydrogenase from arabidopsis thaliana, and uses thereof |
WO2001072974A3 (en) * | 2000-03-29 | 2002-01-31 | Ascorbex Ltd | L-galactose dehydrogenase from arabidopsis thaliana, and uses thereof |
WO2002010425A3 (en) * | 2000-08-02 | 2002-10-24 | Biopolo S C A R L | Ascorbic acid production from yeasts |
US6630330B1 (en) | 2000-08-02 | 2003-10-07 | Biopolo S.C.A.R.L. | Ascorbic acid production from yeast |
EP1498489A2 (en) * | 2000-08-02 | 2005-01-19 | BIOPOLO S.C.a.R.L. | Ascorbic acid production from yeasts |
EP1498489A3 (en) * | 2000-08-02 | 2005-04-13 | BIOPOLO S.C.a.R.L. | Ascorbic acid production from yeasts |
WO2002010425A2 (en) * | 2000-08-02 | 2002-02-07 | Biopolo S.C.A.R.L. | Ascorbic acid production from yeasts |
CN100447249C (en) * | 2000-08-02 | 2008-12-31 | 比奥波罗有限合伙公司 | Ascorbic acid production from yeast |
US7579171B2 (en) | 2000-08-02 | 2009-08-25 | Universita Degli Studi Di Milano, Bicocca | Ascorbic acid production from yeast |
WO2002103001A1 (en) * | 2001-06-15 | 2002-12-27 | Vlaams Interuniversitair Instituut Voor Biotechnologie Vzw | Gdp-mannose-3',5'-epimerase and methods of use thereof |
Also Published As
Publication number | Publication date |
---|---|
JP2002508155A (en) | 2002-03-19 |
AU1775299A (en) | 1999-07-19 |
EP1042486A1 (en) | 2000-10-11 |
CA2316990A1 (en) | 1999-07-08 |
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