WO1997021816A1 - Genetic control of fruit ripening - Google Patents

Genetic control of fruit ripening Download PDF

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Publication number
WO1997021816A1
WO1997021816A1 PCT/GB1996/003076 GB9603076W WO9721816A1 WO 1997021816 A1 WO1997021816 A1 WO 1997021816A1 GB 9603076 W GB9603076 W GB 9603076W WO 9721816 A1 WO9721816 A1 WO 9721816A1
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sequence
sequences
plant
fruit
gene
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PCT/GB1996/003076
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French (fr)
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Kenneth Manning
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Zeneca Limited
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Priority to AU11062/97A priority Critical patent/AU1106297A/en
Publication of WO1997021816A1 publication Critical patent/WO1997021816A1/en

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    • C12N9/00Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
    • C12N9/14Hydrolases (3)
    • C12N9/24Hydrolases (3) acting on glycosyl compounds (3.2)
    • C12N9/2402Hydrolases (3) acting on glycosyl compounds (3.2) hydrolysing O- and S- glycosyl compounds (3.2.1)
    • C12N9/2405Glucanases
    • C12N9/2408Glucanases acting on alpha -1,4-glucosidic bonds
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    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/63Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • C12N15/79Vectors or expression systems specially adapted for eukaryotic hosts
    • C12N15/82Vectors or expression systems specially adapted for eukaryotic hosts for plant cells, e.g. plant artificial chromosomes (PACs)
    • C12N15/8201Methods for introducing genetic material into plant cells, e.g. DNA, RNA, stable or transient incorporation, tissue culture methods adapted for transformation
    • C12N15/8202Methods for introducing genetic material into plant cells, e.g. DNA, RNA, stable or transient incorporation, tissue culture methods adapted for transformation by biological means, e.g. cell mediated or natural vector
    • C12N15/8205Agrobacterium mediated transformation
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    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/63Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • C12N15/79Vectors or expression systems specially adapted for eukaryotic hosts
    • C12N15/82Vectors or expression systems specially adapted for eukaryotic hosts for plant cells, e.g. plant artificial chromosomes (PACs)
    • C12N15/8241Phenotypically and genetically modified plants via recombinant DNA technology
    • C12N15/8242Phenotypically and genetically modified plants via recombinant DNA technology with non-agronomic quality (output) traits, e.g. for industrial processing; Value added, non-agronomic traits
    • C12N15/8243Phenotypically and genetically modified plants via recombinant DNA technology with non-agronomic quality (output) traits, e.g. for industrial processing; Value added, non-agronomic traits involving biosynthetic or metabolic pathways, i.e. metabolic engineering, e.g. nicotine, caffeine
    • C12N15/8249Phenotypically and genetically modified plants via recombinant DNA technology with non-agronomic quality (output) traits, e.g. for industrial processing; Value added, non-agronomic traits involving biosynthetic or metabolic pathways, i.e. metabolic engineering, e.g. nicotine, caffeine involving ethylene biosynthesis, senescence or fruit development, e.g. modified tomato ripening, cut flower shelf-life
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    • C12N9/00Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
    • C12N9/0004Oxidoreductases (1.)
    • C12N9/0071Oxidoreductases (1.) acting on paired donors with incorporation of molecular oxygen (1.14)
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    • C12N9/00Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
    • C12N9/10Transferases (2.)
    • C12N9/1025Acyltransferases (2.3)
    • C12N9/1029Acyltransferases (2.3) transferring groups other than amino-acyl groups (2.3.1)
    • C12N9/1037Naringenin-chalcone synthase (2.3.1.74), i.e. chalcone synthase
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    • C12N9/00Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
    • C12N9/10Transferases (2.)
    • C12N9/1048Glycosyltransferases (2.4)
    • C12N9/1051Hexosyltransferases (2.4.1)

Definitions

  • This invention relates generally to the modification of a plant phenotype by the regulation of plant gene expression. More specifically it relates to the control of fruit ripening by control of one or more than one gene which is known to be implicated in that process.
  • Overexpression is achieved by insertion of one or more than one extra copies of the selected gene.
  • Other lesser used methods involve modification of the genetic control elements, the promoter and control sequences, to achieve greater or lesser expression of an inserted gene.
  • antisense downregulation a DNA which is complementary to all or part of the target gene is inserted into the genome in reverse orientation and without its translation initiation signal.
  • antisense gene which is transcribable but not translatable, produces mRNA which is complementary in sequence to mRNA product transcribed from the endogenous gene: that antisense mRNA then binds with the naturally produced "sense" mRNA to form a duplex which inhibits translation of the natural mRNA to protein.
  • a fragment is sufficient.
  • the size of the fragment does not appear to be particularly important. Fragments as small as 40 or so nucleotides have been reported to be effective. Generally somewhere in the region of 50 nucleotides is accepted as sufficient to obtain the inhibitory effect.
  • nucleotides may very well work: a greater number, up to the equivalent of full length, will certainly work. It is usual simply to use a fragment length for which there is a convenient restriction enzyme cleavage site somewhere downstream of fifty nucleotides. The fact that only a fragment of the gene is required means that not all of the gene need be sequenced. It also means that commonly a cDNA will suffice, obviating the need to isolate the full genomic sequence.
  • the antisense fragment does not have to be precisely the same as the endogenous complementary strand of the target gene There simply has to be sufficient sequence similarity to achieve inhibition of the target gene
  • sequences isolated from one species may be effective in another, it is not infrequent to find exceptions where the degree of sequence similarity between one species and the other is insufficient for the effect to be obtained In such cases, it may be necessary to isolate the species-specific homologue.
  • Antisense downregulation technology is well-established in the art It is the subject of several textbooks and many hundreds of journal publications.
  • the principal patent reference is European Patent No 240,208 in the name of Calgene Inc There is no reason to doubt the operabihty of antisense technology It is well-established, used routinely in laborato ⁇ es around the world and products m which it is used are on the market.
  • Gene control by any of the methods described requires insertion of the sense or antisense sequence, with appropriate promoters and termination sequences containing polyadenylation signals, into the genome of the target plant species by transformation, followed by regeneration of the transformants into whole plants. It is probably fair to say that transformation methods exist for most plant species or can be obtained by adaptation of available methods.
  • Agrobacterium- mediated transformation For dicotyledonous plants the most widely used method is Agrobacterium- mediated transformation. This is the best known, most widely studied and, therefore, best understood of all transformation methods.
  • the rhizobacterium Agrobacterium tumefaciens, or the related Agrobacterium rhizogenes contain certain plasmids which, in nature, cause the formation of disease symptoms, crown gall or hairy root tumours, in plants which are infected by the bacterium.
  • Part of the mechanism employed by Agrobacterium in pathogenesis is that a section of plasmid DNA which is bounded by right and left border regions is transferred stably into the genome of the infected plant.
  • Agrobacterium The effectiveness of Agrobacterium is restricted to the host range of the microorganism and is thus restricted more or less to dicotyledonous plant species. In general monocotyledonous species, which include the important cereal crops, are not amenable to transformation by the Agrobacterium method. Various methods for the direct insertion of DNA into the nucleus of monocot cells are known.
  • microparticles of dense material are fired at high velocity at the target cells where they penetrate the cells, opening an A- aperture in the cell wall through which DNA may enter.
  • the DNA may be coated on to the microparticles or may be added to the culture medium.
  • the DNA is inserted by injection into individual cells via an ultrafine hollow needle.
  • Another method applicable to both monocots and dicots, involves creating a suspension of the target cells in a liquid, adding microscopic needle-like material, such as silicon carbide or silicon nitride "whiskers", and agitating so that the cells and whiskers collide and DNA present in the liquid enters the cell.
  • This invention is concerned with the control of ⁇ pening in fruit, and the particular interest here is m strawberries.
  • the interest in controlling the ⁇ penmg process is to improve the flavour and/or texture of the fruit both characters being largely affected by the ⁇ pening process.
  • Sugars are the most important soluble component of the flavour. Some 99% of the soluble sugars in strawberry is accounted for by sucrose, glucose and fructose, the amount of these sugars being affected by the season but their relative proportions are largely unaffected
  • An object of the present invention is to provide DNA sequences enabling the construction of DNAs suitable for the control of ripening in strawber ⁇ es.
  • a vector for use in the genetic transformation of strawberry cells in order to regulate ripening comprising a promoter sequence, a regulation sequence and a transcription termination sequence, in which the regulation sequence is selected from the group consisting of Sequences 1 through 9 given herein.
  • the regulation sequence varies from Sequences 1 through 9 but retains sufficient similarity to be effective in gene regulation.
  • the regulatory gene may be a homologue of a gene of sequence 1 through 9 which has been obtained from a different plant species.
  • the gene regulation sequence may be in the same or antisense orientation as the endogenous target gene. It may also be a of partial or full sequence length.
  • the invention further contemplates the overexpression of one or more of the genes represented by the DNAs provided by inserting into the strawberry genome one or more than one extra copies thereof.
  • the invention also provides a gene regulation sequence selected from Sequences 1 through 9 herewith and sequences which are obtainable from said sequences by the use thereof as probes.
  • Promoters suitable for use in constructs of the invention may be any sutable promoters which are known to be effective in driving expression of foreign genes in plants, for example the promoters may be those which are isolatable from the genomic version of the cDNAs of the invention.
  • the invention also provides a strawberry plant and propagating material thereof which contains a vector of this invention.
  • a method for the control of ripening of strawberry fruit comprising inserting into the genome of the cell of a strawberry plant a gene regulation vector aforesaid.
  • the invention further provides genetically improved strawberry plants which ripen more slowly that their unaltered counterparts.
  • the gene regulation sequences of the invention may be synthesised from the sequence information given or may be isolated from a library.
  • a cDNA library of strawberry ripening genes T e library was deposited on 15th November 1994 and has the Accession Number NCIMB 40693
  • th s invenuon is based on the identification of genes which encode proteins involved in strawberry ⁇ pemng-related processes DNA sequences which encode these proteins have been cloned and characte ⁇ sed.
  • the DNA sequences may be used to modify plant ⁇ pening characte ⁇ stics of fruit
  • strawberry plants can be generated which, amongst other phenotypic modifications, may have one or more of the following fruit characteristics improved resistance to damage during harvest, packaging and transportation due to slowing of the ⁇ pening and over- ⁇ penmg processes, longer shelf life and better storage characte ⁇ stics due to reduced activity of degradative pathways (e.g.
  • the activity of the ⁇ pening-related proteins may be either increased or reduced depending on the characte ⁇ stics desired for the modified plant part (fruit, leaf, flower, etc)
  • the levels of protein may be increased, for example, by incorporauon of additional genes
  • the additional genes may be designed to give either the same or different spatial and temporal patterns of expression in the fruit "Antisense” or “partial sense” or other techniques may be used to reduce the expression of ⁇ pening-related protein
  • each ⁇ pening-related protein or enzyme may be modified either individually or in combination with modificaUon of the activity of one or more other ⁇ pening- related proteins/enzymes
  • the activities of the ripening-related proteins/enzymes may be modified in combination with modification of the acuvity of other enzymes involved in fruit ⁇ pening or related processes
  • DNA constructs according to the invention may comprise a base sequence at least 10 bases (preferably at least 35 bases) in length for transcnption into RNA There is no theoretical upper limit to the base sequence - it may be as long as the relevant mRNA produced by the cell - but for convenience it will generally be found suitable to use sequences between 100 and 1000 bases in length The preparation of such constructs is desc ⁇ bed in more detail below As a source of the DNA base sequence for transcnption, a suitable cDNA or genomic
  • DNA or synthetic polynucleotide may be used.
  • the isolation of suitable ⁇ pening-related sequences is desc ⁇ bed above; it is convenient to use DNA sequences derived from the ⁇ pening-related clones deposited at NCIMB in Aberdeen Sequences coding for the whole, or substantially the whole, of the approp ⁇ ate ripening-related protein may thus be obtained Suitable lengths of this DNA sequence may be cut out for use by means of rest ⁇ cuon enzymes.
  • genomic DNA as the source of a base sequence for transcnption it is possible to use either intron or exon regions or a combination of both
  • the cDNA sequence as found in one of the strawberry plasmids or the gene sequence as found in the chromosome of the strawberry plant may be used.
  • DNA constructs may be made using standard techniques.
  • the DNA sequence for transcnption may be obtained by treating a vector containing said sequence with rest ⁇ ction enzymes to cut out the appropriate segment.
  • the DNA sequence for transcnption may also be generated by annealing and hgating synthetic oligonucleotides or by using synthetic oligonucleotides in a polymerase chain reaction (PCR) to give suitable rest ⁇ ction sites at each end.
  • PCR polymerase chain reaction
  • the DNA sequence is then cloned into a vector containing upstream promoter and downstream terminator sequences If antisense DNA is required, the cloning is earned out so that the cut DNA sequence is inverted with respect to its o ⁇ entation in the strand from which it was cut.
  • RNA t in a base sequence which is complementary to part or all of the sequence of the npenmg-related mRNA
  • the two RNA strands are complementary not only in their base sequence but also in their onentations (5' to 3')
  • the template and coding strands retain the assignments and onentations of the ongmal plant gene Constructs expressing sense RNA
  • constructs which express the functional ⁇ pening-related protein the whole of the coding region of the gene is linked to transcnptional control sequences capable of expression in plants
  • constructs according to the present invention may be made as follows A suitable vector containing the desired base sequence for transcnption is treated with rest ⁇ ction enzymes to cut the sequence out. The DNA strand so obtained is cloned (if desired, in reverse o ⁇ entation) into a second vector containing the desired promoter sequence and the desired terminator sequence.
  • Suitable promoters include the 35S cauliflower mosaic virus promoter, the polyubiquitin promoter and the tomato polygalacturonase gene promoter sequence (Bird et al, 1988, Plant Molecular Biology, 11:651-662) or other developmetally regulated fruit promoters.
  • Suitable terminator sequences include that of the Agrobacterium tumefaaens nopaline synthase gene (the nos 3' end)
  • the transcnptional initiation region (or promoter) operative in plants may be a constitutive promoter (such as the 35S cauliflower mosaic virus promoter) or an inducible or developmentally regulated promoter (such as fruit-specific promoters), as circumstances require.
  • ⁇ pemng-related protein activity may be desirable to modify ⁇ pemng-related protein activity only dunng fruit development and/or ⁇ pemng.
  • Use of a consututive promoter will tend to affect npenmg-related protein levels and functions in all parts of the plant, while use of a tissue specific promoter allows more selective control of gene expression and affected functions
  • tissue specific promoter allows more selective control of gene expression and affected functions
  • the antisense or sense RNA is produced only in the organ m which its action is required and/or only at the time required
  • Fruit development and/or npening- specific promoters that could be used include the npening-enhanced polygacturonase q promoter (International Patent Publication Number WO92/08798), the E8 promoter (Diekman & Fischer, 1988, EMBO, 7:3315-3320), the fruit specific 2A1 1 promoter (Pear et al, 1989, Plant Molecular Biology, 13:6
  • Ripening-related protein or enzyme activity may be modified to a greater or lesser extent by controlling the degree of the appropriate ripening-related protein's sense or antisense mRNA production in the plant cells. This may be done by suitable choice of promoter sequences, or by selecting the number of copies or the site of integration of the DNA sequences that are introduced into the plant genome.
  • the DNA construct may include more than one DNA sequence encoding the ripening-related protein or more than one recombinant construct may be transformed into each plant cell.
  • each ripening-related protein may be separately modified by transformation with a suitable DNA construct comprising a ripening-related sequence.
  • the activity of two or more ripening-related proteins may be simultaneously modified by transforming a cell with two or more separate constructs.
  • a plant cell may be transformed with a single DNA construct comprising both a first ripening-related sequence and a second ripening-related sequence.
  • ripening-related protein(s) may be modified while also modifying the activity of one or more other enzymes.
  • the other enzymes may be involved in cell wall metabolism or in fruit development and ripening.
  • Cell wall metabolising enzymes that may be modified in combination with a ripening-related protein include but are not limited to: pectin esterase, polygalacturonase, ⁇ -galactanase, ⁇ -glucanase.
  • Other enzymes involved in fruit development and ripening that may be modified in combination with a ripening-related protein include but are not limited to: ethylene biosynthetic enzymes, carotenoid biosynthetic enzymes including phytoene synthase, carbohydrate metabolism enzymes.
  • a first plant may be individually transformed with a ripening-related gene construct and then crossed with a second plant which has been individually transformed with a construct encoding another l O enzyme
  • plants may be either consecutively or co-transformed with ⁇ pening-related constructs and with approp ⁇ ate constructs for modification of the activity of the other enzyme(s)
  • An alternative example is plant transformation with a ⁇ pemng-related construct which itself contains an additional gene for modification of the activity of the other enzyme(s)
  • the ⁇ pemng-related gene constructs may contain sequences of DNA for regulation of the expression of the other enzyme(s) located adjacent to the ⁇ pening-related sequences These additional sequences may be in either sense or antisense o ⁇ entation as desc ⁇ bed in International patent application pub cauon number WO93/23551 (single construct having distinct DNA regions homologous to different target genes)
  • a DNA construct of the invention is transformed into a target plant cell
  • the target plant cell may be part of a whole plant or may be an isolated cell or part of a tissue which may be regenerated into a whole plant
  • the npening-related sequence used in the transformation construct may be de ⁇ ved from the same plant species, or may be de ⁇ ved from any other plant species (as there will be sufficient sequence simila ⁇ ty to allow modification of related isoenzyme gene expression)
  • Transgenic plants and their progeny may be used in standard breeding programmes, resulting in improved plant lines having the desired characte ⁇ stics
  • fruit-bea ⁇ ng plants expressing a ripening-related construct according to the invention may be incorporated into a breeding programme to alter fruit-npening characte ⁇ stics and/or fruit quality
  • Such altered fruit may be easily denved from elite lines which already possess a range of advantageous traits after a substantial breeding programme these elite lines may be further improved by modifying the expression of a single targeted npening-related protein/enzyme to give the fruit a specific desired property
  • RNA that generates such npening-related proteins For fruit-beanng plants, fruit may be obtained by growing and cropping using conventional methods. Seeds may be obtained from such fruit by conventional methods (for example, tomato seeds are separated from the pulp of the ripe fruit and dried, following which they may be stored for one or more seasons). Fertile seed derived from the genetically modified fruit may be grown to produce further similar modified plants and fruit.
  • the fruit derived from genetically modified plants and their progeny may be sold for immediate consumption, raw or cooked, or processed by canning or conversion to soup, sauce or paste. Equally, they may be used to provide seeds according to the invention.
  • the genetically modified plants may be heterozygous for the ripening-related DNA constructs.
  • the seeds obtained from self fertilisation of such plants are a population in which the DNA constructs behave like single Mendelian genes and are distributed according to Mendelian principles: eg, where such a plant contains only one copy of the construct, 25% of the seeds contain two copies of the construct, 50% contain one copy and 25% contain no copy at all.
  • Mendelian principles eg, where such a plant contains only one copy of the construct, 25% of the seeds contain two copies of the construct, 50% contain one copy and 25% contain no copy at all.
  • the offspring of selfed plants produce fruit and seeds according to the present invention, and those which do may themselves be either heterozygous or homozygous for the defining trait. It is convenient to maintain a stock of seed which is homozygous for the ripening-related DNA construct.
  • All crosses of such seed stock will contain at least one copy of the construct, and self-fertilized progeny will contain two copies, i.e. be homozygous in respect of the character.
  • Such homozygous seed stock may be conventionally used as one parent in FI crosses to produce heterozygous seed for marketing.
  • Such seed, and fruit derived from it form further aspects of our invention.
  • a process of producing FI hybrid seed comprises producing a plant capable of bearing genetically modified fruit homozygous for a ripening-related DNA construct, crossing such a plant with a second homozygous variety, and recovering FI hybrid seed. It is possible according to our invention to transform two or more plants with different ripening-related DNA constructs and to cross the progeny of the resulting lines, so as to obtain seed of plants which contain two or more constructs leading to reduced expression of two or more fruit-ripening-related proteins.
  • Figure 1 shows a diagrammatic map of plasmid pBFNCEL, de ⁇ ved from pBINPLUS.
  • Figure 2 shows the results of agarose gel analysis of
  • Figure 3 shows the results of a northern blot analysis of O-methyl transferase, chalcone synthase, flavano ⁇ d-3-hydroxylase, UDP glucosyl flavonol transferase and UDP glucuronosyl transferase gene expression in wild type strawber ⁇ es.
  • Figure 4 shows the results of a northern blot analysis of invertase gene expression in wild type strawbernes.
  • Total mRNA was isolated from ripe fruit tissue (the receptacle with the achenes removed) of strawberry (Fraga ⁇ a x ananassa Duch. cv. B ⁇ ghton) as desc ⁇ bed by
  • Double stranded cDNAs were cloned into the ⁇ gtlO vector using the BRL cloning system (8287SA Bethseda Research Laboratories, Paisley, Renfrewshire, UK) essentially as follows Internal EcoRl sites of the cDNAs were methylated using EcoRl methylase The DNA termini were repaired with T4 DNA polymerase and phosphorylated EcoRl linkers ligated to the cDNA woth T4 ligase Excess linkers were digested and removed by column chromatography on DEAE-Sephadex The pu ⁇ fied double stranded cDNAs with EcoRl termini were ligated into ⁇ gtlO vector DNA digested with EcoRl and dephosphorylated Vector DNA was then packaged using an in vitro packaging extract (Promega Corporatiom, Southampton, UK) Recombinant bactenophage were mixed with plating bactena (E coh C600 hflA 150) as decn
  • the unamp fied cDNA library from ripe strawberry was differentially screened using cDNA from fruit receptacle tissue at the npe and white stages of ripeness A proportion of the library was plated at low density and duplicate plaque lifts made on to Hybond N nylon filters (Amersham) according to the manufacturer's instructions
  • One filter was hyb ⁇ dised to npe cDNA from white fruit and the duplicate filter hyb ⁇ dised to npe cDNA Hyb ⁇ disations were at high stringency using digoxigenin as a non-radioactive label (Boeh ⁇ nger Mannheim, Lewes, London, UK) Plaques hybndising preferenually to npe cDNA were picked and replated at low density for a second round of selection by differential screening Single plaques from the second screening were picked and numbered as ripening-enhanced clones
  • the npe cDNA library was prepared with an efficiency of 3 03x 10 ⁇ plaque-forming units per microgram of cDNA
  • the size of the cDNA inserts in this library ranged from approximately 0 24 to 6 kbp with a mean insert size of approximately 1 4 kbp m
  • 83 putative ⁇ pemng clones were obtained. Of these. 48 were pure clones with single inserts, the remainder being impure and having muluple inserts
  • the 48 clones with single inserts were partially sequenced using the DyeDeoxy (Trade Mark) Terminator Cycle Sequencing Kit (Applied Biosystems, Warnngton, Cheshire, UK) with forward and reverse primers specific for the ⁇ gtir j vector. From these, the following mne ⁇ pening-related clones were selected. Companson of these sequences in the EMBL database using GCG ('Wisconsin') software has identified homologies for the clones listed in Table I.
  • Clones 2, 50, 55a, 68, 84, 85, 88 and 89 are members of the same gene family, with clones 2, 50, 68 and 88 being identical and clones 55a, 85, and 89 representing three other genes in this family.
  • a vector is constructed using the sequences corresponding to a fragment of the insert of one of the sequences 1 to 9 This fragment is synthesised by polymerase chain reaction using synthetic pnmers The ends of the fragment are made flush with T4 polymerase and it is cloned into the vector pJRl which has previously been cut with Smal.
  • pJRl Smith et al, 1988, Nature, 334 724-726) is a B ⁇ nl9 (Bevan, 1984, Nucleic Acids Research, 12.8711-8721) based vector, which permits the expression of the antisense RNA under the control of the CaMV 35S promoter
  • This vector includes a nopaline synthase (nos) 3' end termination sequence
  • a vector is constructed using a rest ⁇ ction fragment obtained from a strawberry ⁇ pemng-related clone which is then cloned into the vectors GA643 (An et al, 1988, Plant Molecular Biology Manual A3- 1-19) or pDH51 (Pietrzak et al, 1986, Nucleic Acids Research, 14:5875-5869) which has previously been cut with a compatible rest ⁇ ction enzyme(s)
  • a restnction fragment from the ⁇ pening related sequence/pDH51 clone containing the promoter, the sequence of interest and other pDH51 sequence is cloned into SLJ44026B or SLJ44024B (Jones et al, 1990, Transgemc Research, 1) or Bml9 (Bevan, 1984, Nucleic Acids Research, 12.871 1-8721 ) which permits the expression of the antisense RNA under control of the CaMV 35S promoter This procedure is illustrated in Figures 2 and 3
  • RNA vectors with a fruit enhanced promoter Construction of antisense RNA vectors with a fruit enhanced promoter.
  • the fragment of the npening-related cDNA that was described in Example 2 is also cloned into the vector pJR3 pJR3 is a Bin 19 based vector, which permits the expression of the antisense RNA under the control of the tomato polygalacturonase (PG) promoter
  • PG tomato polygalacturonase
  • vectors with the co ⁇ ect orientation of the ⁇ pening-related sequences are identified by DNA sequence analysis
  • the fragment of the npening-related cDNA that was desc ⁇ bed in Example 2 is also cloned into the vectors desc ⁇ bed in Example 2 in the sense onentation
  • the fragment of the ⁇ pening-related cDN A that was desc ⁇ bed in Example 3 is also cloned into the vectors described in Example 3 in the sense o ⁇ entation After synthesis, the vectors with the sense o ⁇ entation of the npening-related sequence are identified by DNA sequence analysis
  • Vectors are transfe ⁇ ed to Agrobacterium tumefaciens LBA4404 (a micro-organism widely available to plant biotechnologists) and are used to transform strawberry plants. Transformation follows standard protocols (e g. Bird et al, 1988, Plant Molecular Organization
  • the transformation of strawberry may also be earned out as follows
  • the sequence of a near full length cDNA from strawberry encoding the enzyme cellulase was inserted in the antisense o ⁇ entation as desc ⁇ bed in Example 2 into a pBINPLUS vector ( van Engelen et al (1995) Transgenic Research 4, 288-290) containing the cauliflower mosaic virus (CaMV) 35S promoter-nos3' terminator cassette from pJ IRi inserted into the Hind HI/ EcoRl site.
  • CaMV cauliflower mosaic virus
  • pJRIRi is a de ⁇ vative of pJRl (Smith et al ( 1988) Nature 334 724-26) which is made by substituting a Hindm/Sst ⁇ fragment containing the wild type nos/nptll cassette from pGA472 for the equivalent fragment in pJRl and then inverting the EcoRI/Hindi ⁇ CaMV35S/nos3' fragment using linkers
  • a map of pJRIRi is desc ⁇ bed in published International Patent Application No.
  • Transformation of strawberry with other desired genes may be achieved in an analogous manner to that desc ⁇ bed above for transformation with cDNA encoding cellulase IS
  • FIG. 1400bp PCR fragment obtained from genomic DNA from a putative strawberry transformant containing an antisense cellulase construct and a similar size PCR fragment obtained from the vector antisense construct used to transform the strawberry were analysed as shown in Figure 2.
  • Figure 1 provides details of the expression vector used in this experiment. The primers used were from the 35S promoter sequence and from the cellulase sequence. The results shown in Figure 2 show that the transgene was incorporated into the strawberry demonstrating successful transformation had been achieved.
  • Flavanone 3-hydroxylase (type 1)
  • SEQ-ID-NO-3 Clone 085 Identity: Flavanone 3-hydroxylase (type 2)
  • SEQ-ID-NO-4 Clone 089 Identity: Flavanone 3-hydroxylase (type 3)
  • Flavanone 3-hydroxylase (type 4) 055a.seq Length: 559 July 17, 1995 15:38 Type: N Check: 712 ..
  • AAAATGCCCT CAGCCGGAAC TTGCACTCGG CGTGGAAGCT

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Abstract

The ripening characteristics of strawberries are modified by genetic transformation with one or more than one ripening-related DNA selected from Sequences 1 to 9.

Description

GENETIC CONTROL OF FRUIT RIPENING
This invention relates generally to the modification of a plant phenotype by the regulation of plant gene expression. More specifically it relates to the control of fruit ripening by control of one or more than one gene which is known to be implicated in that process.
Two principal methods for the control of expression are known. These are referred to in the art as "antisense downregulation" and "sense downregulation" or "cosuppression". Both of these methods lead to an inhibition of expression of the target gene.
Overexpression is achieved by insertion of one or more than one extra copies of the selected gene. Other lesser used methods involve modification of the genetic control elements, the promoter and control sequences, to achieve greater or lesser expression of an inserted gene. In antisense downregulation, a DNA which is complementary to all or part of the target gene is inserted into the genome in reverse orientation and without its translation initiation signal. The simplest theory is that such an antisense gene, which is transcribable but not translatable, produces mRNA which is complementary in sequence to mRNA product transcribed from the endogenous gene: that antisense mRNA then binds with the naturally produced "sense" mRNA to form a duplex which inhibits translation of the natural mRNA to protein. It is not necessary that the inserted antisense gene be equal in length to the endogenous gene sequence: a fragment is sufficient. The size of the fragment does not appear to be particularly important. Fragments as small as 40 or so nucleotides have been reported to be effective. Generally somewhere in the region of 50 nucleotides is accepted as sufficient to obtain the inhibitory effect.
However, it has to be said that fewer nucleotides may very well work: a greater number, up to the equivalent of full length, will certainly work. It is usual simply to use a fragment length for which there is a convenient restriction enzyme cleavage site somewhere downstream of fifty nucleotides. The fact that only a fragment of the gene is required means that not all of the gene need be sequenced. It also means that commonly a cDNA will suffice, obviating the need to isolate the full genomic sequence. a
The antisense fragment does not have to be precisely the same as the endogenous complementary strand of the target gene There simply has to be sufficient sequence similarity to achieve inhibition of the target gene This is an important feature of anUsense technology as it permits the use of a sequence which has been deπved from one plant species to be effective in another and obviates the need to construct antisense vectors for each individual species of interest Although sequences isolated from one species may be effective in another, it is not infrequent to find exceptions where the degree of sequence similarity between one species and the other is insufficient for the effect to be obtained In such cases, it may be necessary to isolate the species-specific homologue.
Antisense downregulation technology is well-established in the art It is the subject of several textbooks and many hundreds of journal publications. The principal patent reference is European Patent No 240,208 in the name of Calgene Inc There is no reason to doubt the operabihty of antisense technology It is well-established, used routinely in laboratoπes around the world and products m which it is used are on the market.
Both overexpression and downregulation are achieved by "sense" technology If a full length copy of the target gene is inserted into the genome then a range of phenotypes is obtained, some overexpressing the target gene, some underexpressing A population of plants produced by this method may then be screened and individual phenotypes isolated
As with antisense, the inserted sequence is lacking in a translation initiation signal Another similarity with antisense is that the inserted sequence need not be a full length copy Indeed, it has been found that the distribution of over- and under- expressing phenotypes is skewed in favour of underexpression and this is advantageous when gene inhibition is the desired effect For overexpression, it is preferable that the inserted copy gene retain its translation initiation codon The principal patent reference on cosuppression is European Patent 465,572 in the name of DNA Plant Technology Inc There is no reason to doubt the operabihty of sense/cosuppression technology It is well- established, used routinely in laboratories around the world and products in which it is used are on the market 2 Sense and antisense gene regulation is reviewed by Bird and Ray in Biotechnology and Genetic Engineering Reviews 9: 207-227 (1991 ). The use of these techniques to control selected genes in tomato has been descibed by Gray et.al., Plant Molecular Biology, 19: 69-87 ( 1992) and is described herein to control the expression of selected genes in strawberries.
Gene control by any of the methods described requires insertion of the sense or antisense sequence, with appropriate promoters and termination sequences containing polyadenylation signals, into the genome of the target plant species by transformation, followed by regeneration of the transformants into whole plants. It is probably fair to say that transformation methods exist for most plant species or can be obtained by adaptation of available methods.
For dicotyledonous plants the most widely used method is Agrobacterium- mediated transformation. This is the best known, most widely studied and, therefore, best understood of all transformation methods. The rhizobacterium Agrobacterium tumefaciens, or the related Agrobacterium rhizogenes, contain certain plasmids which, in nature, cause the formation of disease symptoms, crown gall or hairy root tumours, in plants which are infected by the bacterium. Part of the mechanism employed by Agrobacterium in pathogenesis is that a section of plasmid DNA which is bounded by right and left border regions is transferred stably into the genome of the infected plant. Therefore, if foreign DNA is inserted into the so-called "transfer" region (T-region) in substitution for the genes normally present therein, that foreign gene will be transferred into the plant genome. There are many hundreds of references in the journal literature, in textbooks and in patents and the methodology is well-established.
The effectiveness of Agrobacterium is restricted to the host range of the microorganism and is thus restricted more or less to dicotyledonous plant species. In general monocotyledonous species, which include the important cereal crops, are not amenable to transformation by the Agrobacterium method. Various methods for the direct insertion of DNA into the nucleus of monocot cells are known.
In the ballistic method, microparticles of dense material, usually gold or tungsten, are fired at high velocity at the target cells where they penetrate the cells, opening an A- aperture in the cell wall through which DNA may enter. The DNA may be coated on to the microparticles or may be added to the culture medium.
In microinjection, the DNA is inserted by injection into individual cells via an ultrafine hollow needle. Another method, applicable to both monocots and dicots, involves creating a suspension of the target cells in a liquid, adding microscopic needle-like material, such as silicon carbide or silicon nitride "whiskers", and agitating so that the cells and whiskers collide and DNA present in the liquid enters the cell.
In summary, then, the requirements for both sense and antisense technology are known and the methods by which the required sequences may be introduced are known. What remains, then is to identify genes whose regulation will be expected to have a desired effect, isolate them or isolate a fragment of sufficiently effective length, construct a chimeπc gene in which the effective fragment is inserted between promoter and termination signals, and insert the construct into cells of the target plant species by transformation. Whole plants may then be regenerated from the transformed cells
This invention is concerned with the control of πpening in fruit, and the particular interest here is m strawberries.
The interest in controlling the πpenmg process is to improve the flavour and/or texture of the fruit both characters being largely affected by the πpening process. Sugars are the most important soluble component of the flavour. Some 99% of the soluble sugars in strawberry is accounted for by sucrose, glucose and fructose, the amount of these sugars being affected by the season but their relative proportions are largely unaffected
There is little information in the literature on the metabolic pathways involved in the synthesis of sugars in strawberry. It is known, however that sugars are synthesised duπng the npening of the fruit.
The changes in gene expression duπng strawberry fruit πpening and their regulation by auxin have been descπbed in Planta 194: 62-68 ( 1994)
An object of the present invention is to provide DNA sequences enabling the construction of DNAs suitable for the control of ripening in strawberπes. S
According to the present invention there is provided a vector for use in the genetic transformation of strawberry cells in order to regulate ripening, comprising a promoter sequence, a regulation sequence and a transcription termination sequence, in which the regulation sequence is selected from the group consisting of Sequences 1 through 9 given herein.
In a variation of the vector of this invention the regulation sequence varies from Sequences 1 through 9 but retains sufficient similarity to be effective in gene regulation. Thus, the regulatory gene may be a homologue of a gene of sequence 1 through 9 which has been obtained from a different plant species. The gene regulation sequence may be in the same or antisense orientation as the endogenous target gene. It may also be a of partial or full sequence length. The invention further contemplates the overexpression of one or more of the genes represented by the DNAs provided by inserting into the strawberry genome one or more than one extra copies thereof. The invention also provides a gene regulation sequence selected from Sequences 1 through 9 herewith and sequences which are obtainable from said sequences by the use thereof as probes.
Promoters suitable for use in constructs of the invention may be any sutable promoters which are known to be effective in driving expression of foreign genes in plants, for example the promoters may be those which are isolatable from the genomic version of the cDNAs of the invention.
The invention also provides a strawberry plant and propagating material thereof which contains a vector of this invention.
Further according to the invention, there is provided a method for the control of ripening of strawberry fruit comprising inserting into the genome of the cell of a strawberry plant a gene regulation vector aforesaid.
The invention further provides genetically improved strawberry plants which ripen more slowly that their unaltered counterparts.
The gene regulation sequences of the invention may be synthesised from the sequence information given or may be isolated from a library. To assist isolation we have (» deposited with the National Collection of Industπal & Maπne Bacteπa, St Machar Drive, Aberdeen, UK, a cDNA library of strawberry ripening genes T e library was deposited on 15th November 1994 and has the Accession Number NCIMB 40693
Thus, th s invenuon is based on the identification of genes which encode proteins involved in strawberry πpemng-related processes DNA sequences which encode these proteins have been cloned and characteπsed. The DNA sequences may be used to modify plant πpening characteπstics of fruit
By virtue of this invention strawberry plants can be generated which, amongst other phenotypic modifications, may have one or more of the following fruit characteristics improved resistance to damage during harvest, packaging and transportation due to slowing of the πpening and over-πpenmg processes, longer shelf life and better storage characteπstics due to reduced activity of degradative pathways (e.g. cell wall hydrolysis), improved processing characteπstics due to changed activity of proteins/enzymes contπbuting to factors such as viscosity, solids, pH, elasticity, improved flavour and aroma at the point of sale due to modificaUon of the sugar/acid balance and other flavour and aroma components responsible for characteπstics of the πpe fruit, modified colour due to changes in activity of enzymes involved in the pathways of pigment biosynthesis (e.g. lycopene, β-carotene, chalcones and anthocyanins), increased resistance to post-harvest pathogens such as fungi
The activity of the πpening-related proteins may be either increased or reduced depending on the characteπstics desired for the modified plant part (fruit, leaf, flower, etc) The levels of protein may be increased, for example, by incorporauon of additional genes The additional genes may be designed to give either the same or different spatial and temporal patterns of expression in the fruit "Antisense" or "partial sense" or other techniques may be used to reduce the expression of πpening-related protein
The activity of each πpening-related protein or enzyme may be modified either individually or in combination with modificaUon of the activity of one or more other πpening- related proteins/enzymes In addition, the activities of the ripening-related proteins/enzymes may be modified in combination with modification of the acuvity of other enzymes involved in fruit πpening or related processes
DNA constructs according to the invention may comprise a base sequence at least 10 bases (preferably at least 35 bases) in length for transcnption into RNA There is no theoretical upper limit to the base sequence - it may be as long as the relevant mRNA produced by the cell - but for convenience it will generally be found suitable to use sequences between 100 and 1000 bases in length The preparation of such constructs is descπbed in more detail below As a source of the DNA base sequence for transcnption, a suitable cDNA or genomic
DNA or synthetic polynucleotide may be used. The isolation of suitable πpening-related sequences is descπbed above; it is convenient to use DNA sequences derived from the πpening-related clones deposited at NCIMB in Aberdeen Sequences coding for the whole, or substantially the whole, of the appropπate ripening-related protein may thus be obtained Suitable lengths of this DNA sequence may be cut out for use by means of restπcuon enzymes. When using genomic DNA as the source of a base sequence for transcnption it is possible to use either intron or exon regions or a combination of both
To obtain constructs suitable for expression of the appropπate npenmg-related sequence in plant cells, the cDNA sequence as found in one of the strawberry plasmids or the gene sequence as found in the chromosome of the strawberry plant may be used. Recombinant
DNA constructs may be made using standard techniques. For example, the DNA sequence for transcnption may be obtained by treating a vector containing said sequence with restπction enzymes to cut out the appropriate segment. The DNA sequence for transcnption may also be generated by annealing and hgating synthetic oligonucleotides or by using synthetic oligonucleotides in a polymerase chain reaction (PCR) to give suitable restπction sites at each end. The DNA sequence is then cloned into a vector containing upstream promoter and downstream terminator sequences If antisense DNA is required, the cloning is earned out so that the cut DNA sequence is inverted with respect to its oπentation in the strand from which it was cut. In a construct expressing antisense RNA, the strand that was formerly the template strand becomes the coding strand, and vice versa The construct will thus encode RNA t in a base sequence which is complementary to part or all of the sequence of the npenmg-related mRNA Thus the two RNA strands are complementary not only in their base sequence but also in their onentations (5' to 3')
In a construct expressing sense RNA, the template and coding strands retain the assignments and onentations of the ongmal plant gene Constructs expressing sense
RNA encode RNA with a base sequence which is homologous to part or all of the sequence of the mRNA. In constructs which express the functional πpening-related protein, the whole of the coding region of the gene is linked to transcnptional control sequences capable of expression in plants For example, constructs according to the present invention may be made as follows A suitable vector containing the desired base sequence for transcnption is treated with restπction enzymes to cut the sequence out. The DNA strand so obtained is cloned (if desired, in reverse oπentation) into a second vector containing the desired promoter sequence and the desired terminator sequence. Suitable promoters include the 35S cauliflower mosaic virus promoter, the polyubiquitin promoter and the tomato polygalacturonase gene promoter sequence (Bird et al, 1988, Plant Molecular Biology, 11:651-662) or other developmetally regulated fruit promoters. Suitable terminator sequences include that of the Agrobacterium tumefaaens nopaline synthase gene (the nos 3' end) The transcnptional initiation region (or promoter) operative in plants may be a constitutive promoter (such as the 35S cauliflower mosaic virus promoter) or an inducible or developmentally regulated promoter (such as fruit-specific promoters), as circumstances require. For example, it may be desirable to modify πpemng-related protein activity only dunng fruit development and/or πpemng. Use of a consututive promoter will tend to affect npenmg-related protein levels and functions in all parts of the plant, while use of a tissue specific promoter allows more selective control of gene expression and affected functions Thus in applying the invention it may be found convenient to use a promoter that will give expression dunng fruit development and/or πpening Thus the antisense or sense RNA is produced only in the organ m which its action is required and/or only at the time required Fruit development and/or npening- specific promoters that could be used include the npening-enhanced polygacturonase q promoter (International Patent Publication Number WO92/08798), the E8 promoter (Diekman & Fischer, 1988, EMBO, 7:3315-3320), the fruit specific 2A1 1 promoter (Pear et al, 1989, Plant Molecular Biology, 13:639-651 ), the histidine decarboxylase promoter (HDC, Sibia) and the phytoene synthase promoter. Ripening-related protein or enzyme activity (and hence ripening-related processes and fruit ripening characteristics) may be modified to a greater or lesser extent by controlling the degree of the appropriate ripening-related protein's sense or antisense mRNA production in the plant cells. This may be done by suitable choice of promoter sequences, or by selecting the number of copies or the site of integration of the DNA sequences that are introduced into the plant genome. For example, the DNA construct may include more than one DNA sequence encoding the ripening-related protein or more than one recombinant construct may be transformed into each plant cell.
The activity of each ripening-related protein may be separately modified by transformation with a suitable DNA construct comprising a ripening-related sequence. In addition, the activity of two or more ripening-related proteins may be simultaneously modified by transforming a cell with two or more separate constructs. Alternatively, a plant cell may be transformed with a single DNA construct comprising both a first ripening-related sequence and a second ripening-related sequence.
It is also possible to modify the activity of the ripening-related protein(s) while also modifying the activity of one or more other enzymes. The other enzymes may be involved in cell wall metabolism or in fruit development and ripening. Cell wall metabolising enzymes that may be modified in combination with a ripening-related protein include but are not limited to: pectin esterase, polygalacturonase, β-galactanase, β-glucanase. Other enzymes involved in fruit development and ripening that may be modified in combination with a ripening-related protein include but are not limited to: ethylene biosynthetic enzymes, carotenoid biosynthetic enzymes including phytoene synthase, carbohydrate metabolism enzymes.
Several methods are available for modification of the activity of the ripening-related protein(s) in combination with other enzymes. For example, a first plant may be individually transformed with a ripening-related gene construct and then crossed with a second plant which has been individually transformed with a construct encoding another l O enzyme As a further example, plants may be either consecutively or co-transformed with πpening-related constructs and with appropπate constructs for modification of the activity of the other enzyme(s) An alternative example is plant transformation with a πpemng-related construct which itself contains an additional gene for modification of the activity of the other enzyme(s) The πpemng-related gene constructs may contain sequences of DNA for regulation of the expression of the other enzyme(s) located adjacent to the πpening-related sequences These additional sequences may be in either sense or antisense oπentation as descπbed in International patent application pub cauon number WO93/23551 (single construct having distinct DNA regions homologous to different target genes) By using such methods, the benefits of modifying the activity of the npening-related proteins may be combined with the benefits of modifying the activity of other enzymes
A DNA construct of the invention is transformed into a target plant cell The target plant cell may be part of a whole plant or may be an isolated cell or part of a tissue which may be regenerated into a whole plant For any particular plant cell, the npening-related sequence used in the transformation construct may be deπved from the same plant species, or may be deπved from any other plant species (as there will be sufficient sequence similaπty to allow modification of related isoenzyme gene expression)
Transgenic plants and their progeny may be used in standard breeding programmes, resulting in improved plant lines having the desired characteπstics For example, fruit-beaπng plants expressing a ripening-related construct according to the invention may be incorporated into a breeding programme to alter fruit-npening characteπstics and/or fruit quality Such altered fruit may be easily denved from elite lines which already possess a range of advantageous traits after a substantial breeding programme these elite lines may be further improved by modifying the expression of a single targeted npening-related protein/enzyme to give the fruit a specific desired property
By transforming plants with DNA constructs according to the invention, it is possible to produce plants having an altered (increased or reduced) level of expression of one or more npen g-related proteins, resulting from the presencein the plant genome of DNA capable of generating sense or antisense RNA homologous or complementary to the
RNA that generates such npening-related proteins For fruit-beanng plants, fruit may be obtained by growing and cropping using conventional methods. Seeds may be obtained from such fruit by conventional methods (for example, tomato seeds are separated from the pulp of the ripe fruit and dried, following which they may be stored for one or more seasons). Fertile seed derived from the genetically modified fruit may be grown to produce further similar modified plants and fruit.
The fruit derived from genetically modified plants and their progeny may be sold for immediate consumption, raw or cooked, or processed by canning or conversion to soup, sauce or paste. Equally, they may be used to provide seeds according to the invention.
The genetically modified plants (transformed plants and their progeny) may be heterozygous for the ripening-related DNA constructs. The seeds obtained from self fertilisation of such plants are a population in which the DNA constructs behave like single Mendelian genes and are distributed according to Mendelian principles: eg, where such a plant contains only one copy of the construct, 25% of the seeds contain two copies of the construct, 50% contain one copy and 25% contain no copy at all. Thus not all the offspring of selfed plants produce fruit and seeds according to the present invention, and those which do may themselves be either heterozygous or homozygous for the defining trait. It is convenient to maintain a stock of seed which is homozygous for the ripening-related DNA construct. All crosses of such seed stock will contain at least one copy of the construct, and self-fertilized progeny will contain two copies, i.e. be homozygous in respect of the character. Such homozygous seed stock may be conventionally used as one parent in FI crosses to produce heterozygous seed for marketing. Such seed, and fruit derived from it, form further aspects of our invention. We further provide a method of producing FI hybrid plants expressing a ripening-related DNA sequence which comprises crossing two parent lines, at least one of which is homozygous for a ripening-related DNA construct. A process of producing FI hybrid seed comprises producing a plant capable of bearing genetically modified fruit homozygous for a ripening-related DNA construct, crossing such a plant with a second homozygous variety, and recovering FI hybrid seed. It is possible according to our invention to transform two or more plants with different ripening-related DNA constructs and to cross the progeny of the resulting lines, so as to obtain seed of plants which contain two or more constructs leading to reduced expression of two or more fruit-ripening-related proteins. IX
The invention will now be descπbed, by way of illustration, by the following Examples and with reference to the following figures in which:
Figure 1 shows a diagrammatic map of plasmid pBFNCEL, deπved from pBINPLUS. Figure 2 shows the results of agarose gel analysis of
1 pBINCEL - plasmid construct with antisense cellulase PCR fragment using pnmers from 35S promoter and 5' to 3' cellulase.
2. genomic DNA from transformed strawberry PCR fragment using pnmers from 35S promoter and 5' to 3' cellulase
Figure 3 shows the results of a northern blot analysis of O-methyl transferase, chalcone synthase, flavanoιd-3-hydroxylase, UDP glucosyl flavonol transferase and UDP glucuronosyl transferase gene expression in wild type strawberπes.
Figure 4 shows the results of a northern blot analysis of invertase gene expression in wild type strawbernes.
EXAMPLE 1
Construction of a cDNA library of ripening genes
1.1 Isolation of messenger RNA
Total mRNA was isolated from ripe fruit tissue (the receptacle with the achenes removed) of strawberry (Fragaπa x ananassa Duch. cv. Bπghton) as descπbed by
Manning K. Analyucal Biochemistry 195, 45-50 ( 1991 ). Messenger RNA was isolated from total RNA by ohgo(dT)-cellulose chromatography according to Bantle et.al., Analytical Biochemistry 72, 413-427 ( 1976).
1.2 Synthesis of cDNA The first and second strands of the cDNAs were synthesised from messenger RNAs using a commercial cDNA synthesis kit (RPN.1256Y Amersham Life Sciences, Amersham, Bucks., UK), pπming the first strand cDNA synthesis with olgio-dT 1.3 Cloning into vector
Double stranded cDNAs were cloned into the λgtlO vector using the BRL cloning system (8287SA Bethseda Research Laboratories, Paisley, Renfrewshire, UK) essentially as follows Internal EcoRl sites of the cDNAs were methylated using EcoRl methylase The DNA termini were repaired with T4 DNA polymerase and phosphorylated EcoRl linkers ligated to the cDNA woth T4 ligase Excess linkers were digested and removed by column chromatography on DEAE-Sephadex The puπfied double stranded cDNAs with EcoRl termini were ligated into λgtlO vector DNA digested with EcoRl and dephosphorylated Vector DNA was then packaged using an in vitro packaging extract (Promega Corporatiom, Southampton, UK) Recombinant bactenophage were mixed with plating bactena (E coh C600 hflA 150) as decnbed in the BRL protocol to determine titre, for library screening and subsequent amplification
1.4 Screening of the cDNA library from ripe strawberry
The unamp fied cDNA library from ripe strawberry was differentially screened using cDNA from fruit receptacle tissue at the npe and white stages of ripeness A proportion of the library was plated at low density and duplicate plaque lifts made on to Hybond N nylon filters (Amersham) according to the manufacturer's instructions One filter was hybπdised to npe cDNA from white fruit and the duplicate filter hybπdised to npe cDNA Hybπdisations were at high stringency using digoxigenin as a non-radioactive label (Boehπnger Mannheim, Lewes, Sussex, UK) Plaques hybndising preferenually to npe cDNA were picked and replated at low density for a second round of selection by differential screening Single plaques from the second screening were picked and numbered as ripening-enhanced clones
1.5 Characterisation of the ripe cDNA library and ripening-enhanced clones The npe cDNA library was prepared with an efficiency of 3 03x 10^ plaque-forming units per microgram of cDNA The size of the cDNA inserts in this library ranged from approximately 0 24 to 6 kbp with a mean insert size of approximately 1 4 kbp m From the 343 plaques used in the first screen, 83 putative πpemng clones were obtained. Of these. 48 were pure clones with single inserts, the remainder being impure and having muluple inserts
The 48 clones with single inserts were partially sequenced using the DyeDeoxy (Trade Mark) Terminator Cycle Sequencing Kit (Applied Biosystems, Warnngton, Cheshire, UK) with forward and reverse primers specific for the λgtirj vector. From these, the following mne πpening-related clones were selected. Companson of these sequences in the EMBL database using GCG ('Wisconsin') software has identified homologies for the clones listed in Table I.
Figure imgf000016_0001
Clones 2, 50, 55a, 68, 84, 85, 88 and 89 are members of the same gene family, with clones 2, 50, 68 and 88 being identical and clones 55a, 85, and 89 representing three other genes in this family. IS EXAMPLE 2
Construction of antisense RNA vectors with the CaMV35S promoter
A vector is constructed using the sequences corresponding to a fragment of the insert of one of the sequences 1 to 9 This fragment is synthesised by polymerase chain reaction using synthetic pnmers The ends of the fragment are made flush with T4 polymerase and it is cloned into the vector pJRl which has previously been cut with Smal. pJRl (Smith et al, 1988, Nature, 334 724-726) is a Bιnl9 (Bevan, 1984, Nucleic Acids Research, 12.8711-8721) based vector, which permits the expression of the antisense RNA under the control of the CaMV 35S promoter This vector includes a nopaline synthase (nos) 3' end termination sequence
Alternauvely a vector is constructed using a restπction fragment obtained from a strawberry πpemng-related clone which is then cloned into the vectors GA643 (An et al, 1988, Plant Molecular Biology Manual A3- 1-19) or pDH51 (Pietrzak et al, 1986, Nucleic Acids Research, 14:5875-5869) which has previously been cut with a compatible restπction enzyme(s) A restnction fragment from the πpening related sequence/pDH51 clone containing the promoter, the sequence of interest and other pDH51 sequence is cloned into SLJ44026B or SLJ44024B (Jones et al, 1990, Transgemc Research, 1) or Bml9 (Bevan, 1984, Nucleic Acids Research, 12.871 1-8721 ) which permits the expression of the antisense RNA under control of the CaMV 35S promoter This procedure is illustrated in Figures 2 and 3
After synthesis of the vector, the structure and oπentation of the sequences are confirmed by DNA sequence analysis
EXAMPLE 3
Construction of antisense RNA vectors with a fruit enhanced promoter. The fragment of the npening-related cDNA that was described in Example 2 is also cloned into the vector pJR3 pJR3 is a Bin 19 based vector, which permits the expression of the antisense RNA under the control of the tomato polygalacturonase (PG) promoter This vector includes approximately 5 kb of promoter sequence and 1 8 kb of 3' sequence from the PG promoter separated by a multiple cloning site It
After synthesis, vectors with the coπect orientation of the πpening-related sequences are identified by DNA sequence analysis
Alternative fruit enhanced promoters (such as E8 or 2A11) are substituted for the polygalacturonase promoter in pJR3 to give alternative patterns of expression
EXAMPLE 4
Construction of truncated sense RNA vectors with the CaMV 35S promoter
The fragment of the npening-related cDNA that was descπbed in Example 2 is also cloned into the vectors descπbed in Example 2 in the sense onentation
After synthesis, the vectors with the sense orientation of the phytoene synthase sequence are identified by DNA sequence analysis
EXAMPLE 5
Construction of truncated sense RNA vectors with fruit-enhanced promoter.
The fragment of the πpening-related cDN A that was descπbed in Example 3 is also cloned into the vectors described in Example 3 in the sense oπentation After synthesis, the vectors with the sense oπentation of the npening-related sequence are identified by DNA sequence analysis
EXAMPLE 6
Construction of an over-expression vector using the CaMV35S promoter
The complete sequence of a npening-related cDNA containing a full open-reading frame is inserted into the vectors descπbed in Example 2
EXAMPLE 7
Construction of an over-expression vector using a fruit-enhanced promoter
The complete sequence of a npening-related cDNA containing a full open-reading frame is inserted into the vectors described in Example 3 (pJR3 or alternatives with different promoters) EXAMPLE 8 ^
Generation of transformed plants
Vectors are transfeπed to Agrobacterium tumefaciens LBA4404 (a micro-organism widely available to plant biotechnologists) and are used to transform strawberry plants. Transformation follows standard protocols (e g. Bird et al, 1988, Plant Molecular
Biology, 11:651-662). Transformed plants are identified by their ability to grow on media containing the antibiotic kanamycin. Plants are regenerated and grown to matuπty Ripening fruit are analyzed for modifications to their πpemng characteπstics
The transformation of strawberry, for example to control selected genes, may also be earned out as follows The sequence of a near full length cDNA from strawberry encoding the enzyme cellulase was inserted in the antisense oπentation as descπbed in Example 2 into a pBINPLUS vector ( van Engelen et al (1995) Transgenic Research 4, 288-290) containing the cauliflower mosaic virus (CaMV) 35S promoter-nos3' terminator cassette from pJ IRi inserted into the Hind HI/ EcoRl site. (pJRIRi is a deπvative of pJRl (Smith et al ( 1988) Nature 334 724-26) which is made by substituting a Hindm/Sstπ fragment containing the wild type nos/nptll cassette from pGA472 for the equivalent fragment in pJRl and then inverting the EcoRI/Hindiπ CaMV35S/nos3' fragment using linkers A map of pJRIRi is descπbed in published International Patent Application No. WO 94/03619) Strawberry (cv Calypso) leaf discs were transformed by coincubation with the kanamycin sensiϋve Agrobacterium tumefaciens strain EHA105 (a strain widely available to plant biotechnologists and desenbed in Hood et al. Transgenic Research 2 208-218 (1995)) containing the pBINPLUS antisense construct Explants were grown on regeneration medium initially containing lOOmg/ml kanamycin After three weeks the explants were transferred to regeneration medium without kanamycin At 4-6 weeks putatively transformed shoots were cultured on propagation medium for two weeks then transformants selected on medium containing 25mg/l kanamycin
Transformation of strawberry with other desired genes may be achieved in an analogous manner to that descπbed above for transformation with cDNA encoding cellulase IS
EXAMPLE 9
Evidence of Successful Transformation
A 1400bp PCR fragment obtained from genomic DNA from a putative strawberry transformant containing an antisense cellulase construct and a similar size PCR fragment obtained from the vector antisense construct used to transform the strawberry were analysed as shown in Figure 2. Figure 1 provides details of the expression vector used in this experiment. The primers used were from the 35S promoter sequence and from the cellulase sequence. The results shown in Figure 2 show that the transgene was incorporated into the strawberry demonstrating successful transformation had been achieved.
EXAMPLE 10
Analysis of Gene Expression During Ripening
Total RNA was extracted from strawberry fruit during normal development and analysed by northern blotting using standard experimental procedures. The results of such an analysis are shown in Figures 3 and 4. The level of mRNA coπesponding to the expression of O-methyl transferase, chalcone synthase, flavanoid-3-hydroxylase, UDP- glucosyl flavonol transferase, UDP-glucuronosyl transferase and invertase was monitored in the receptacle at various time points between pollination and the overripe stage. The data provide evidence that O-methyl transferase, chalcone synthase, flavanoid-3- hydroxylase, UDP-glucosyl flavonol transferase, UDP-glucuronosyl transferase and invertase are involved in the ripening process in normal fruit development. SEQ-ID-NO-1
Clone: 060
Identity: Chalcone synthase (type 2) OόO.seq Length: 524 July 17, 1995 15: 12 Type: N Check: 1359 ..
1 GGGTCCGGTC ACCGTTCTTG GCCATCGGGA CCGCAACTCC TCCCAACTGT
51 ATTGACCAGA GCACGTACCC CGACTACTAC TTTCGTNTCA
CCAACAGCGA
101 GCACAAGGCT GAGCTCANGG AGNAAATTCC AGCGTCATGT GTGACAAATC
151 TATGATCAAG AAGCGTTACA TGTATTTGAC TGAAGAGATT CTCAAAGGAG
201 CAATCCTAGG CATGTGTGAG TACATGGCAC CTTCACTTGN ATGCAAGACA
251 AGACATGGTG GTGGNTAGNA AATTCCAAAG CTTGGCAAAA GAGGCCGCTG
301 TCAAGGTCAT TAAGGAATGG GGGTCAGNCC AAGTCCAAAA
TCACCCACTT
351 GGGTCTTTCG GTACCACTAG TGGTGTCGAC ATNCCCGGTG CCGATTTACC
401 AGCTCACTAA GGCTCTTGGG CCCTCCCGCC CGTCTTTTCA AGNGTCTCAN
451 NAATGTTCCC AGCAANGGNT GTTTTCGGCC CGNAGGGNAC GGGGNCTCCN
501 GNTTGGNAAA AGGGTCTTGG CCC A
SEQ-ID-NO-2 Clone: 084
Identity: Flavanone 3-hydroxylase (type 1)
084.seq Length: 507 July 17, 1995 15:24 Type: N Check: 9579 ..
1 AAAAATTCTC AGGCAGATCG CTAGAGAGCA TATATCAGAA TGGNCCCTAC
51 TCCTACTACT CTGACCGTCA TAGTGGGGGA GAAGACCCTC CAACAGAGCT 10
101 TCGTCCGCGA CGNAAGTATG AGCGCCCTAA GGTGGCCTAC AACCAATTCA
151 GN A ATG AT AT TCCGATC ATT TCCCTCTCTG GCATCGAAGA
GGTCGAAGGC
201 CGCCGCGCTG AGATTTGCAA GAAGATTGTT GAGGCCTGCG AGGNACTGGG
251 GCGTTTTCCA GATTGTTGAT CACGGTTATC GTACCCCAAG CTCATCTCGG
301 AAATGACTCG TCTCGCCAGA GGAGTTCTTC GNTTTGNCGC CGGAGGGAAA
351 AGCTCCGCTT TCGACATTTC CCCGNGGCAA AAAAGGGTNG CTTCATCGNT
401 TTCCAGCCAT TTACAGNGAG ANGCGGTNCA GNATTGGTGC
GAGATTGTNN
451 ACCTACTTCT CATACCCGGN GGNGCCACCC AGACTNCTCG AGGTNGNCCN
501 TAT AN AN
SEQ-ID-NO-3 Clone: 085 Identity: Flavanone 3-hydroxylase (type 2)
085.Seq Length: 486 July 17, 1995 15:33 Type: N Check: 7729 ..
1 CTTAGCCAAA GCCGGAATCG ATTATCATGC ATCCAACTAC CTATTTATTT
51 GGTTACACTA CTGATTCTAT ATAAACACTG CTGCTAGGTC TAAAGCTTCC
101 ATCATTAAAA GCATAACGTA CAACAAGCCC TAAGAAGCTT TTGTAAGTAG
151 TGTACGTAGA GAGATCGAAA GAGAGAGCTA TAGCTAGAAG CGACAATGGT
201 GACTGCTGCA TCCATTGGTT CAAGAGTCGA GAGTTTGGCC
AGCAGCGGGA
251 TCTCAACGAT CCCAAAGGAG TACGTGAGAC CCGAAGAGGA GCTCGTTAAC 2.1
301 ATCGGTGACA TCTTCGAAGA CGAGAAGAGC ACCGAAGGGN CTCAAGTACC
351 TACCATTGAT TTGAGGGAGA TAGACTCGGN GGACATCAAG GTGAGGGAGA
401 TTTGGAGGNT TTTNGGNNGA NACCAGCCCN CGNCTGGGGT TNATGAACCT
451 NGNCACCNTGGAACTCCNNGGNGTCATGACGGGTCA
SEQ-ID-NO-4 Clone: 089 Identity: Flavanone 3-hydroxylase (type 3)
089.seq Length: 510 July 17, 1995 15:31 Type: N Check: 2979 ..
1 TTTTGGAATA CACCGCCTAA CAATGGCTGN AGNTCCAAGT GAGTCCATAC
51 CCTCTGTAAA TAAGGCCTGG GTCTATTCAG AGTATGGAAA AACTGCTGAT
101 GTTCTCAAGT CNGATCCAAG TGTGGCTGTT CCTGAAATTA AAGAGGATCA
151 GGTGTCTGAT CAAGGTTGTN GNTGTTTCTC TTAACCCAGT TGNATTTTAA
201 GAGGGNTCTT GGTTACTTCA NGGACACTGA CTCTCCCCTA
CCTACAATTC
251 CAGGGTATNA TGTAGCTNGT GTNGCGGTAA AGGTNGGAAG TCAAGTTNAC
301 CANGTTCAAG GTGGNGGATG AAGTGTNTNG GGGATCTCAN CGANACAGNA
351 TTGGTNNACC CAACAANGTN NGGGNCTCTT TGGGCCAGAG NCACACTCNT
401 TNCAGGATTT AAAGAGTTTT TGNCTTACAA AACCCANNTN ACCNCNCANC
451 NTTNNTTGGA AGNATNCTTA GNCNTCCCCC CNGGTTTTTT
GTAACTTACC
501 CNCNNAAGGG a
SEQ-ID-NO-5
Clone: 055a
Identity: Flavanone 3-hydroxylase (type 4) 055a.seq Length: 559 July 17, 1995 15:38 Type: N Check: 712 ..
1 GGCGGCAAAA TTCAAGGCTA CGGAAGCAAG CTTGCAAACA ATGCTTCCGG
51 GCAACTTGAG TGGGAGGACT ACTTTTTCCA CTGTGTTTAT
CCTGAGGACA
101 AGCGTGACTT GTCCATTTGG CCTCAAACAC CTTCCGACTA TATTGTGGCA
151 ACAAGTGAGT ATGCTAAGGA ACTGAGGGGG NTAGCAACCA AGATACTGAG
201 CATACTCTCA CTTGGCTTGG GATTAGAAGA AGGGAGGCTG GAGAAGGAGG
251 TCGGTGGACT CGAAGAACTC CTCATGCAAA TGAAGGATCA NCTACTACCC
301 AAAATGCCCT CAGCCGGAAC TTGCACTCGG CGTGGAAGCT
CATACCCGAC
351 ATAAGTGCAC TCACCTTCAT CCTCCACAAN ATGGTTCCCC GNCTGNAGTT
401 CTTCCTACGG GGGNAAATNG NTTGACAGCN AAGGTGNGTC CCCAACTCCG
451 NCGNCATGCA CATNGGCGAC AACCNTAGAG ATTCTTCNGC ACCGGCANTA
501 CAAGAGCATC TTCACAGGGG GGTCCNCCAA CAAGGGGGAA GGCNACGGTC
551 TNCNCTNNC
SEQ-ID-NO-6 Clone: 074 Identity: UDP-glucose glucosyltransferase
Reverse complemented
074.seq Length: 508 July 17, 1995 16:47 Type: N Check: 5861 ϋ
1 NGGGGAANNC ACTAGTGGGG ATTTCACGNT TAAGGAGGGN AAACCATCTC
51 TGTTNATTTG CNGGAATNNT CGAAAAGTGA AGACCTTCAG GATCCTACNC
101 AGAGGGAATG CATCCTTGCG GGAAAACTTT GGAGTACACT
CTNNTAAACG
151 TATNGCTTTC ACNAGAGTGG GGAACTAATT GCTANCCACT
TGCAACNCGC
201 AGTTTTNCAT NCAACTCGTT CGAAGAAACT AGACCCTGTG ATCACAAATG
251 ATTTGAAGTC CAAATTNCAA GAGGTTCCTC AACGTGGGAC CATTGGACCT
301 ACTAGAACCA ACAGCGAGTG CAGCCACCAC CACACCGCAG AGCGACGGAA
351 GCTGTTGCCG GAGATGGCTG CTTATCGTGG CTTGATAAAC AGAAGGCGGC
401 GTCCGTGGTC TATGTGAGTT TTGGATCAGT AACAAGACCA
TCNCCGGAAG
451 AGCTTATGGC GCTAGCTGAG GCTCTGGAGG CCAGTAGGGT TCCATTCTTG
501 TGGTCACT
SEQ-ID-NO-7
Clone: 109 Identity: ERT lb (UDP-glucuronosyl transferase)
109.seq Length: 432 July 17, 1995 17:02 Type: N Check: 6063
1 ttgttgagct ccggagtttc tttcatatgg gtgatgaagc ccccacaccc
51 tgattccggc tttgaacttc tggttctgcc ggaagggttt ttggagaagg
101 caggagacag aggcaaagtt gtgcaatgga gtccacaaga gaagattttg
151 gagcatcctt cgacggcttg ctttgtgact cattgcgggt ggaactcaac
201 catggagtca ctcacctcag gaatgcccgt ggtggcattc ccacaatggg
2 1 gtgaccaagt gaccgacgcc aagtatttgg tcgacgagtt taaggtggga 301 gtaagaatgt gccgnngaga ggncgaagac agggtnnatc cctagggaag
351 aggtagagaa agtncttgnt ggaggngacc tcggnggccc acggnggngg
401 ngatnangna aaacgccttg anattgaagg nt
SEQ-ID-NO-8 Clone: 21 Identity: Invertase
5'-3' sequence
215end.Gcg Length: 1915 July 17, 1995 15:35 Type: N Check: 994
1 cggccatgat gatattctct ctttggcaat tctgccttct ttcacttttg
51 ctttcttttg gtgttattga gcttcaagct tcccaccatg tctatagcaa
101 ccttcaaact acccaacttg cttcaacaca tccccaagct aaagaccctt
151 acagaactgg ttatcatttc cagcctcgca agaattggat caatgatcca
201 aatgggccac tgatttacaa gggcatttac catcttttct atcagtacaa
251 tcccagcagt gtagtttggg gtaacattgt ttgggcacat tccacatcca
301 ctgatctcgt caactggatt ccacatgaag ctgctatcta cccatcaatt
351 ctctccgata tcaatggctg ttggtcgggg tccgtcacaa tccttcccag
401 cggaaagccg gccattttat acaccggaat caaccccgac aaagaacaag
451 ttcaaaactt ggcatttcca aaaaaccttt ccgacccatt tcttagggag
501 tgggttaaag tcccacaaaa ccctctaatg gctccaactc aagctaacca
551 aatcaatgcc agctcattta gggatcctac cactgcttgg ctagggccag
601 ataagagatg gaggttgatc attggaagca aaaggaacca caggggacta
651 gctatcctct acagaagcaa agatttcatg cattggacta aggctaaaca
701 tccattatat tcaacgccaa aaaatggtat gtgggaatgc cctgattttt
751 tcccagtttc gaagactaag ttgcttggtc ttgacacatc tgcaattggt
801 ccggatgtta agcatgtact caaagttagc ttggacaaca ctaggaaaga
851 gtactacaca attggtacat ataatgtgag caaggatatc tatatcccag OS
901 atgatggatc aattgagagt gattctggtt tgagatatga ttatggtaag
951 ttttatgctt caaaaacttt ctttgacagt gctaagaacc gcagaatctt
1001 gtggggttgg atcaatgagt cctcaagtgt tagtggtgac atcaagaaag
1051 gatggtctgg actccaggca attccaagga ctattgtgct cgacaaatct
101 agaaagcaat tggtgcaatg gcctgtagtg gagcttgaga aacttagaac
151 aaacgaggtc aagttaccaa gcactctcct taaaggagga tcacttcatg
1201 aagtcattgg tgtcacagca gcacaggctg atgtagatgt tgcatttgag
1251 ataagtgatc tcaagaaagc agaagttatg gatccaagtt ggactaatgc
1301 acaacttttg tgtagtaaaa agggtacctc agtgaaaggg gctctaggac
1351 catttggatt gttggcattt gtttcaaagg atttgaaaga aaagacagca
1401 atcttctata gaattttcaa gtctcacaac aataacaaca aatatgtggt
1451 tcttatgtgc agtgaccaaa gcaggtcttc cctaaaccca gataatgata
1501 tgacaactta tggaacattt gtaaacgtgg atcctcttca tgaaaaattg
1551 tcactaagaa gcttgattga tcactctata gtggagagtt ttggtggaaa
1601 aggcaaggag tgcataacag ctagggtgta tcctacattg gctgttgatg
1651 gtgataccca tttatatgct ttcaattatg gaagtgagag tgtcaaaatc
1701 gcaggaagtg catggagcat gaaaactgct aaaatcaatt gatcaagatt
1751 agaaaagaag tggggaggtt gtattgattc ttgtatgtga cccatctact
1801 tatagtgcct cgtaaattag ataattgata taagagttga ataaacaagt
1851 gtgagccaat tttttgtgct tgcatcaatc cattacgctt gtttttatcc
1901 ggaaaaaaaa aaaaa
SEQ-ID-NO-9 Clone: 27
Identity: Invertase
5"-3 sequence
275end.Gcg Length: 1553 July 17, 1995 15:33 Type: N Check: 9419 2b
1 cggtataatg gctccaactc aagctaacca aatcaatgcc agctcattta 51 gggatcctac cactgcttgg ctagggccag ataagagatg gaggttgatc 101 attggaagca aaaggagcca aaggggacta gctatcctct acagaagcaa 151 agatttcatg cattggacta aggctaaaca tccattatat tcaacaccga
201 aaaatggtat gtgggaatgc cctgattttt tcccagtttc gaagactaag 251 ttgcttggtc ttgacacatc tgcaattggt ccggatgtta agcatgtact 301 caaagttagc ttggacaaca ctaggaaaga gtactacaca attggtacat 351 ataatgtgag caaggatatc tatatcccag atgatggatc aattgagagt 401 gattctggtt tgagatatga ttatggtaag ttttatgctt caaaaacctt 451 ctttgacagt gctaagaacc gcagaatctt gtggggttgg atcaatgagt 501 cctcaagtgt tagtggtgac atcaagaaag gatggtctgg actccaggca 551 attccaagga ctattgtgct cgacaaatct ggaaagcaat tggtgcaatg 601 gcctgtagta gagcttgaga aacttagaac aaacgaggtc aagttaccaa 651 gcactctcct taaaggagga tcacttcatg aagtcattgg tgtcacagca 701 gcacaggctg atgtagatgt tgcatttgag ataagtgatc tcaagaaagc 751 agaagttatg gatccaagtt ggactaatgc acaacttttg tgtagtaaaa 801 agggtacctc agtgaaaggg gctctaggac catttggatt gttggcattt 851 gtttcaaagg atttgaaaga aaagacagca atcttctata gaattttcaa 901 gtctcacaac aataacaaca aatatgtggt tcttatgtgc agtgagcaaa 951 gcagatcttc cctaaaccca gataatgata tgacaactta cggagtattt
1001 gtaaatgtgg atcctcttca tgaaaagctg tcattaagaa gtttgattga 1051 tcactctata gtggagagtt ttggtggaaa aggcaaggcg tgcataacag 1101 ctagggtgta tcctacaatg actgttgatg gtgataccca tttatatgca 1 151 ttcaattatg gaagtgagag tgtcaaaatc gcaggaagtg catggagcat 1201 gaaaactgct caaatcaatt gatcaagatt agaaaaagaa gtggagaaaa 2
12 1 gaagtgggga ggttgtgttg attattgtat gtgactcatc tacttatggt
1301 gtctcttaaa ttagataatt gatatgagag ttgaataaat aagtgtgagc
1351 caattttttg tgcttgcatc aatccattag gcttgttttt atctgaactt
1401 gtcattgttt gagaatttgt ctaaatgcta gtttggtatt gatgtgactt
1451 taaaaaaaaa ctactgctga tgtacttcaa aaataactag ttgttaatta
1501 aattagtatt gtgtttggta aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1551 aaa
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Claims

1. A vector for use in the genetic transformation of plant cells in order to regulate fruit ripening, comprising a promoter sequence, a regulation sequence and a transcription termination sequence, in which the regulation sequence is selected from the group consisting of Sequences 1 through 9 given herein.
2. A vector for use in the genetic transformation of plant cells in order to regulate fruit ripening, comprising a promoter sequence, a regulation sequence and a transcription termination sequence, in which the regulation sequence has sufficient similarity to any one of Sequences I through 9 to be effective in gene regulation.
3. A vector as claimed in claim 1 or claim 2 in which the regulatory gene is an
analogue of any one of Sequences 1 through 9 which has been obtained from a different plant species.
4. A vector as claimed in claim 1 or claim 2 or claim 3 in which the gene regulation sequence is in the same or antisense orientation as the endogenous target gene.
5. A vector as claimed in any preceding claim in which the promoter isolated from the genomic equivalent of any of Sequences 1 through 9.
6. A gene regulation sequence selected from Sequences 1 through 9 herewith and sequences which are obtainable from said sequences by the use thereof as probes.
7. A method for the modulation of ripening processes in fruit comprising stably inserting into the genome of a fruit-producing plant one or more copies of a DNA of sequence selected from Sequences 1 through 9 and the genomic equivalents thereof.
A method for the modulation of ripening processes in fruit comprising stably inserting into the genome of a fruit-producing plant one or more copies of a DNA of sequence complementary to any one of Sequences 1 through 9, the genomic equivalents thereof and fragments thereof.
9. A method as claimed in claim 7 or claim 8 in which the said plant is a strawberry
(Fragaria) plant.
10. A plant and propagating material thereof which contains within its genome a
vector of this invention.
1 1. A strawberry plant and propagating material thereof which contains within its genome a vector of this invention.
12 A genetically modified strawberry plant and propagating material derived
therefrom which has a genome comprising a gene expression modulating construct for overexpression or downregulation of an endogenous strawberry plant gene counterpart of Sequences 1 through 9.
13. Each of the gene regulation sequences 1 through 9, isolable from the cDNA
library deposited with the National Collection of Industrial & Marine Bacteria, St. Machar Drive, Aberdeen, UK on 15th November 1994 under the Accession Number NCIMB 40693.
PCT/GB1996/003076 1995-12-13 1996-12-12 Genetic control of fruit ripening WO1997021816A1 (en)

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WO2000050613A2 (en) * 1999-02-22 2000-08-31 Yissum Research And Development Company Of The Hebrew University Of Jerusalem Transgenic plants and method for transforming carnations
WO2000078980A1 (en) * 1999-06-17 2000-12-28 Basf Aktiengesellschaft Method for producing plants with increased flavonoid and phenolic compound content
WO2000078979A1 (en) * 1999-06-17 2000-12-28 Basf Aktiengesellschaft Method for increasing the resistance of cultivated plants to chemical stress
WO2000078981A1 (en) * 1999-06-17 2000-12-28 Basf Aktiengesellschaft Method of increasing the resistance of cultivated plants to phytopathogenic fungi and bacteria by methods of molecular genetics
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