WO1996041875A1 - p-53 BINDING PROTEIN CALLED Mdmx AND ENCODING SEQUENCES FOR SAID PROTEIN - Google Patents
p-53 BINDING PROTEIN CALLED Mdmx AND ENCODING SEQUENCES FOR SAID PROTEIN Download PDFInfo
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- WO1996041875A1 WO1996041875A1 PCT/NL1996/000239 NL9600239W WO9641875A1 WO 1996041875 A1 WO1996041875 A1 WO 1996041875A1 NL 9600239 W NL9600239 W NL 9600239W WO 9641875 A1 WO9641875 A1 WO 9641875A1
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
- C07K14/435—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
- C07K14/46—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates
- C07K14/47—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates from mammals
Definitions
- the present invention relates to molecular biology techniques and especially to their application in cancer research.
- a method to identify new proteins associating to the p53 tumor suppressor protein, with some examples of cDNAs isolated this way is disclosed. It also relates to the results of said method, which are novel proteins having affinity for p53, as well as genes and other nucleic acid molecules encoding these novel proteins.
- the invention also relates to one such a novel protein and its encoding sequences, which protein has homology with the Mdm2 protein and which therefor has been designated as Mdmx.
- the process by which a normal cell is transformed into a tumorigenic cell that can grow out to form a tumor is a very complex process in which several independent genetic changes have to take place.
- These genetic alterations can be roughly divided into two classes. The first comprises the genetic changes that alter the abundancy or properties of a gene product in such a way that it constitutively stimulates cell growth.
- the second class comprises genetic alterations that inhibit the normal cell growth controlling function of a gene product.
- An important role in the switch from normal cell to tumor cell is assigned to a protein called p53.
- the protein called p53 has properties of both classes. Mutations in the p53 gene as found in human tumors abolish the tumor suppressor activity of the protein. In addition, several mutated forms of the p53 protein can have a dominant stimulating effect on cell growth.
- P53 probably functions is by guarding the integrity of the genome of cells . It can do so in two ways, namely through influencing the cell cycle and/or the process of repairing DNA damage and secondly by influencing the apoptosis pathway.
- ⁇ 53 can arrest the cell in the cell cycle.
- the p53 protein may also be involved in the repair of the DNA.
- the presence of DNA damage results in an increase of the p53 protein levels through protein stabilization.
- the increased levels of p53 result in the activation of transcription of a set of p53-responsive genes.
- Two of the most important p53-responsive genes identified sofar are the gene coding for an inhibitor of the cyclin-dependent kinases cdc2, cdk2, cdk4 and cdk ⁇ , and a gene called gadd45.
- the cdk- inhibitor is called p21 c;L P 1 / w afl, and is a member of an expanding family of cdk-inhibitors. These inhibitors inactivate the cdk's by direct binding.
- the activity of the cdk's, in conjunction with their appropriate cyclin partner, is essential for the progression through the cell cycle.
- p53 blocks the cell cycle progression and arrests the cells in the Gl phase mainly.
- the current hypothesis is that this cell cycle delay allows the cell to repair its DNA before the DNA synthesis starts up and introduces mutations at the sites of the DNA damage.
- the second p53-responsive gene important in this respect is the gadd45 gene. It has been shown that (over)expression of gadd45 also blocks cell cycle progression and it has been suggested that gadd45 might have a direct role in stimulating the process of DNA repair.
- the second process p53 is involved in that is important for maintaining genomic integrity is apoptosis or programmed cell death.
- Apoptosis is a very ordered, active process that eventually results in the death of a cell. " The process is very important in embryogenesis to get rid of superfluous cells. Recently more and more evidence has accumulated showing that interference with the apoptotic pathways can be very important for a cell to become a tumor cell. In addition, a successivefull treatment of tumors might depend on the possibility to induce an apoptotic pathway in the tumor cells . Two in vivo studies underscoring the notion that p53 is involved in apoptosis have been most informative.
- transgenic mice expressing an SV40 largeT mutant which can only bind and inactivate members of the retinoblastoma family( pi05 ⁇ , pl07, pl30) but which has no effect on p53 function, develop tumors of the choroid plexus epithelium, but only very slowly compared to mice expressing the wild-type T-antigen.
- the same transgene can induce the development of rapidly growing tumors in p53-deficient mice.
- Comparison of the slowly growing and rapidly growing tumors revealed that the slowly growing tumors contained a significant percentage of apoptotic cells, which could hardly be found in the rapidly growing tumors .
- Mdm2 A third way to abolish the p53 tumor suppressor function is through complexation with another cellular protein called Mdm2.
- Mdm2 Another cellular protein
- the gene encoding this protein was originally isolated from a mouse double-minute present in a spontaneously transformed Balb 3T3 cell line and shown to be responsible for the transformation. Later, it was found that a protein binding to p53 was exactly the same Mdm2 protein. In the transformed cells Mdm2 probably acts by binding to the p53 protein and inactivating its tumor suppressor function. In addition, it has been shown that binding of Mdm2 to p53 completely inhibits the capacity of ⁇ 53 to activate transcription of a reported gene containing a p53-consensus DNA binding site in its promoter region.
- E2F-1 as a transcription factor is normally controlled by another tumor suppressor protein, the product encoded by the retinoblasto a predisposing gene. Active E2F-1 can activate the transcription of genes encoding proteins that stimulate cell growth, like the myc oncogene.
- Mdm2-overexpression mainly through amplification of the gene, has been observed in a significant percentage of certain tumor types, establishing a role for this gene in carcinogenesis.
- the present invention provides a method to arrive at proteins binding to p53 and the elucidation of their encoding genes.
- One aspect of the present invention is the application of a method partly known in itself for the isolation of associating proteins for the identification of (new) p53- associating gene products.
- a first step in the methods according to the invention is the high level expression of the p53 protein in bacteria, with subsequent purification and radioactive labelling of the p53 protein.
- a second step is the use of the labeled p53 protein as a probe to screen cDNA expression libraries to pick up associating proteins and subsequently the Isolation of the encoding cDNAs.
- nucleic acids such as cDNA's
- FIGS. 2a and 2b partial sequences of novel nucleic acids encoding such novel proteins are given.
- Figure 3 gives a novel cDNA sequence encoding another such novel protein which we have called Mdmx.
- the longest cDNA isolated sofar is 1701 nucleotides, and contains an open reading frame of 489 amino acids, exactly the same as the mouse mdm2 open reading frame.
- the third conserved motif is a possible nucleotide binding site (GKT) at amino acid positions 451-453.
- GKT nucleotide binding site
- the Mdmx gene product(s) like the Mdm2 potein, has a role in certain types of cancer. Therefore, the status of the mdmx gene and the expression level can be monitored. This can be performed in several ways. First, the putative overexpression can be a result of gene amplification. This can be investigated by Southern blotting. We have already performed a pilot study to examine possible amplification of the mdmx gene in primary neuroblastomas and in neuroblastoma cell lines.
- Equal amounts of paired DNAs of normal and tumor tissue from a patient were digested with restriction enzymes, fractionated on a agarose gel, blotted onto nylon membranes and probed with a 32p_ labeled fragment of the human mdmx cDNA.
- the last method to analyze mdmx expression is at the protein level.
- Antibodies raised against the protein can be used, if necessary after purification, for in situ histoche istry studies on frozen sections or paraffin-embedded tissues . These types of experiments will give both an answer as to the level and the localization of the protein in the cell.
- Mdmx (over)expression plays a role in the development in (some types of) cancer, it may be important to be able to block Mdmx function in a cell. If the function is to bind and inactivate p53, this interaction could theoretically be relieved by introducting into the cell an overdose of peptide from the Mdmx domain that is necessary for the association to p53. Through competition the binding will be blocked.
- mutants of mdmx that can act dominant-negative on the wild-type protein.
- Possible target domains for mutations are the putative nucleotide binding site and the putative metal-binding motifs. These mutants can be cloned in viral expression vectors (retrovirus, adenovirus, AAV) for delivery to the target cells. It is still possible that MDMX does not inactivate p53, but actually enhances the functions of p53 or is an intermediate in the p53 functional pathways. If that turns out to be the case, not a mutant but a wild-type mdmx gene will be cloned in the expression vectors mentioned above and be delivered to the target cells.
- the coding region for the wild-type human p53 protein was amplified by PCR with primers containing a Kpnl site at the 5' end and a Sad site at the 3' -end. After amplification and cutting the fragment with the mentioned restriction enzymes the resulting DNA fragment was cloned into a Sad and Kpnl- digested modified version of the pET-15b vector obtained from Novagen.
- This modified vector contains 5' of the cloning sites a DNA sequence coding for five aminoacids (RRASV) that is recognized as a phosphorylation site for the Heart Muscle Kinase. Downstream from the cloning sites a sequence coding for 6 histidines is present.
- a fusion p53 protein can be synthesized in bacteria, containing at its N-terminal end a peptide stretch with a phosphorylation site for the Heart Muscle Kinase (Sigma) and' at its C-terminal end a stretch of six histidines that allows purification over a nickel chelate column
- Figure 1 shows the main features of the p53 expression vector.
- the plasmid was propagated in the bacterial strain HB101, and subsequently transformed into the E. coli B-strain BL21(DE3) or this strain containing pLysE.
- the induction of protein expression has essentially been performed according to the pET system manual provided by Novagen.
- a BL21(DE3) colony containing the p53 expression plasmid was grown at 37"C to OD500 of 0.6.
- IPTG was added to a final concentration of ImM and incubation was continued for another 3 h. After cooling on ice the cells were harvested by centrifugation at 4 * C at 5000 x g for 10 min. Cells were grown for additional four hours and pelleted by centrifugation for 10 min at 5000xg.
- the pellet was rinsed with ice cold PBS and resuspended in IMAC- 5 (20 mM Tris pH 8, 0.5 M NaCl, 5 mM Imidazole, 10 ⁇ g/ml PMSF (phenylmethylsulfonyl fluoride) .
- the bacteria were lysed on ice by sonication (3x30 s.) and centrifuged at 20.000xg for 30 min at 4°C. It turned out that over 90% of the produced p53 protein was retained in the pellet.
- Bacterial pellet of insoluble proteins including p53 was incubated in IMAC-5 with 6 M urea for 30 minutes on ice.
- the urea was removed from the soluble fraction with the use of a 10DG desalting column (Bio-Rad) .
- the p53 fusion protein was purified using nickel chelate chromatography according to manufacture instructions (Novagen) .
- the column was washed with increasing concentrations of imidazole (10,20,40, 100 and 200 nM) .
- Coomassie staining of a SDS-PAGE gel indicated that the protein eluted at 200 nM imidazole was over 70% pure.
- a cDNA library from a 16-day-old mouse embryo was obtained from Novagen.
- the cDNAs had been cloned into the lambda EXlox vector from Novagen and transformed into the
- E.coli strain BL21(DE3)pLysE E.coli strain BL21(DE3)pLysE. Approximately 10 ⁇ phages were plated onto 15 150 mm dishes. Dishes were incubated at 37°C for 3-4 hours. When the plaques has become visible, 0.45 ⁇ m nitrocellulose filters (Schleicher and Schiill) soaked in 10 mM IPTG were placed over the plaques and proteins were allowed to transfer overnight. Filter hybridization has been performed essentially as described by Ayer et al. (Cell 72, 211-222, 1993).
- HBB/5% NFDM 20 mM HEPES (pH 7.5), 50 mM KC1, 10 mM MgCl 2 , 10 mM ⁇ -glycerol phosphate, 1 mM DTT, 0.1% NP-40 and 5% non- fatty dry milk] .
- Hybridization was performed overnight with at least 2xl0 5 cpm/ml p53 probe in [20 mM HEPES(pH 7.5), 50 mM KC1, 10 mM MgCl 2 , 10 mM ⁇ -glycerol phosphate, 10 mM DTT, 0.1%
- the initial screen yielded 10 possible positive clones. After a second and third round screen, only three positive lambda clones remained.
- a purified phage preparation was introduced into the E.coli strain BM25.8 (Novagen). Through the Cre-loxP autosubcloning system, plasmids containing the insert are generated. PCR analysis of the three positive clones with the use of primers from the flanking vector sequences showed inserts of approximately 600, 800 and 1700 bp (named clone 1, 2 and 3, respectively). The first two clones were partially sequenced; the DNA sequence obtained showed no significant homology to any known sequence submitted to the several databases. (Fig 2; partial sequence of two smaller clones, clone 1 and clone 2) .
- the sequence of the third clone showed clear homology with a cloned human gene called mdm2. This is to date the only human gene whose gene product can bind to and inactivate the tumor suppressor function of p53, probably by inhibiting its capacity to activate the transcription from promoters containing a p53-recognition consensus DNA sequence (see above) .
- This gene was called the mdmx gene.
- the expression of the mdmx gene was investigated by Northern blotting.
- a polyA+ mRNA blot containing RNA isolated from several mouse tissues was hybridized with a complete mdmx cDNA-fragment isolated.
- mRNAs of approx. 10 kb and 8 kb were observed.
- testis two strong hybridizing bands of - 2000 bp and 1700 bp were seen. These bands are also presents in other tissues but much less abundant. It is unclear as yet what the origin of the longer mRNAs is. It is thus not excluded that the genomic gene that gives rise to expression of mdmx codes for several, more or less, related proteins that can or cannot bind to p53.
- RNA expression of mdmx could also be found by RT-PCR in several mouse tissues and cell lines . Some of the primers from the mouse sequence did also yield a band of expected length with RNA extracted from human cells/cell lines, indicating already the existence of a human homologue of the mdmx gene. This human PCR fragment was cloned and sequenced. The sequence showed high percentage of identity, but not complete, strongly indicating that part of the human homologue was cloned. In addition, screening of a human cDNA library yielded a cDNA that also has a high percentage identity with the mouse mdmx cDNA. In total approximately 750 bp of the probable human homologue of mdmx has been cloned and sequenced.
- the mouse mdmx cDNA was cloned into a CMV-driven eukaryotic expression vector. Transfection of this construct into human of mouse cells yielded the production of an approximately 65 kDa protein as determined by Western blotting on total cell lysates and detection of the protein with a polyclonal rabbit antiserum. (The apparent size of the protein is less than expected based on the homology with mdm2; this runs at approximately 90 kDa; the theoretical molecular weight of both proteins is about 55 kDa. It is not known yet whether the smaller size is an artifact of the expression vector -some mutation?, although we sequenced the expression vector- or that 65 kDa is the real Mr. The fact that the human mdmx protein runs at -80 kDa on the same type of gel -see below- makes us hesitant about the mouse protein size) .
- the same expression vector was used to investigate the effect of mdmx expression on transcriptional transactivation by wild-type p53.
- cotransfection of mdmx could inhibit the transcription activation by wild-type p53, like mdm2.
- the inhibition by mdmx was mapped to the transcription activation domain of p53 (N-terminal domain) . This is the p53 domain to which it was shown that mdm2 binds, suggesting that mdmx also will bind to this part of p53.
- the absence of a p53-responsiveness is supported by an experiment showing that mdm2 gene expression is p53- dependently increased after UV-irradiation but that mdmx expression is not increased by the same treatment. This result suggests a different regulation of expression of the mdm2 and mdmx genes.
- human MDMX The full length coding region of human MDMX was cloned into the modified pET15b vector, described earlier for the production of human p53, and transformed into E. coli BL21. Production of human MDMX protein was induced by the addition of IPTG, cells were harvested and total lysates separated on a polyacrylamide-SDS gel. A protein of approximately 80 kDa was clearly induced upon addition of IPTG. After purification on a nickel-chelate column the protein was injected into rabbits for the production of an antiserum recognizing the human MDMX.
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Priority Applications (3)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
AU60179/96A AU6017996A (en) | 1995-06-13 | 1996-06-13 | P-53 binding protein called mdmx and encoding sequences for said protein |
EP96917730A EP0833905A1 (en) | 1995-06-13 | 1996-06-13 | p-53 BINDING PROTEIN CALLED Mdmx AND ENCODING SEQUENCES FOR SAID PROTEIN |
JP9502946A JPH11507829A (en) | 1995-06-13 | 1996-06-13 | P-53 binding protein called Mdmx and sequence encoding the protein |
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EP95201565 | 1995-06-13 | ||
EP95201565.9 | 1995-06-13 |
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WO1996041875A1 true WO1996041875A1 (en) | 1996-12-27 |
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PCT/NL1996/000239 WO1996041875A1 (en) | 1995-06-13 | 1996-06-13 | p-53 BINDING PROTEIN CALLED Mdmx AND ENCODING SEQUENCES FOR SAID PROTEIN |
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EP (1) | EP0833905A1 (en) |
JP (1) | JPH11507829A (en) |
AU (1) | AU6017996A (en) |
CA (1) | CA2222208A1 (en) |
WO (1) | WO1996041875A1 (en) |
Cited By (3)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
WO1999054444A2 (en) * | 1998-04-22 | 1999-10-28 | Inex Pharmaceuticals Corporation | Combination therapy using nucleic acids and radio therapy |
US6046320A (en) * | 1999-04-09 | 2000-04-04 | Isis Pharmaceuticals Inc. | Antisense modulation of MDMX expression |
US6841537B1 (en) | 1998-04-22 | 2005-01-11 | Protiva Biotherapeutics Inc. | Combination therapy using nucleic acids and conventional drugs |
Families Citing this family (1)
Publication number | Priority date | Publication date | Assignee | Title |
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CN107741503A (en) * | 2017-10-10 | 2018-02-27 | 天津市肿瘤医院 | A kind of experimental method for the interphase interaction for detecting albumen |
Citations (2)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
WO1993020238A2 (en) * | 1992-04-07 | 1993-10-14 | The Johns Hopkins University | Amplification of human mdm2 gene in human tumors |
WO1994008241A1 (en) * | 1992-09-30 | 1994-04-14 | Deutsches Krebsforschungszentrum Stiftung des öffentlichen Rechts | Process for detecting p53-specific antibodies |
-
1996
- 1996-06-13 CA CA 2222208 patent/CA2222208A1/en not_active Abandoned
- 1996-06-13 AU AU60179/96A patent/AU6017996A/en not_active Abandoned
- 1996-06-13 WO PCT/NL1996/000239 patent/WO1996041875A1/en not_active Application Discontinuation
- 1996-06-13 EP EP96917730A patent/EP0833905A1/en not_active Withdrawn
- 1996-06-13 JP JP9502946A patent/JPH11507829A/en active Pending
Patent Citations (2)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
WO1993020238A2 (en) * | 1992-04-07 | 1993-10-14 | The Johns Hopkins University | Amplification of human mdm2 gene in human tumors |
WO1994008241A1 (en) * | 1992-09-30 | 1994-04-14 | Deutsches Krebsforschungszentrum Stiftung des öffentlichen Rechts | Process for detecting p53-specific antibodies |
Non-Patent Citations (1)
Title |
---|
SIKELA, JAMES M. ET AL: "Screening an expression library with a ligand probe: isolation and sequence of a cDNA corresponding to a brain calmodulin-binding protein", PROC. NATL. ACAD. SCI. U. S. A. (1987), 84(9), 3038-42 CODEN: PNASA6;ISSN: 0027-8424, XP002013820 * |
Cited By (7)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
WO1999054444A2 (en) * | 1998-04-22 | 1999-10-28 | Inex Pharmaceuticals Corporation | Combination therapy using nucleic acids and radio therapy |
WO1999054444A3 (en) * | 1998-04-22 | 1999-12-09 | Inex Pharmaceuticals Corp | Combination therapy using nucleic acids and radio therapy |
US6841538B1 (en) | 1998-04-22 | 2005-01-11 | Inex Pharmaceuticals Corporation | Combination therapy using nucleic acids and radio therapy |
US6841537B1 (en) | 1998-04-22 | 2005-01-11 | Protiva Biotherapeutics Inc. | Combination therapy using nucleic acids and conventional drugs |
US6046320A (en) * | 1999-04-09 | 2000-04-04 | Isis Pharmaceuticals Inc. | Antisense modulation of MDMX expression |
WO2000061193A1 (en) * | 1999-04-09 | 2000-10-19 | Isis Pharmaceuticals, Inc. | Antisense modulation of mdmx expression |
EP1165145A4 (en) * | 1999-04-09 | 2003-03-05 | Isis Pharmaceuticals Inc | Antisense modulation of mdmx expression |
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Publication number | Publication date |
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AU6017996A (en) | 1997-01-09 |
EP0833905A1 (en) | 1998-04-08 |
JPH11507829A (en) | 1999-07-13 |
CA2222208A1 (en) | 1996-12-27 |
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