WO1996004379A1 - Methods and compositions for the expression of a bone and prostate derived growth factor - Google Patents

Methods and compositions for the expression of a bone and prostate derived growth factor Download PDF

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Publication number
WO1996004379A1
WO1996004379A1 PCT/US1995/009261 US9509261W WO9604379A1 WO 1996004379 A1 WO1996004379 A1 WO 1996004379A1 US 9509261 W US9509261 W US 9509261W WO 9604379 A1 WO9604379 A1 WO 9604379A1
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bone
bpgf
cells
prostate
protein
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PCT/US1995/009261
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French (fr)
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WO1996004379A9 (en
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Leland W. Chung
Chuan Gao
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Board Of Regents, The University Of Texas System
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Priority to AU31414/95A priority Critical patent/AU3141495A/en
Publication of WO1996004379A1 publication Critical patent/WO1996004379A1/en
Publication of WO1996004379A9 publication Critical patent/WO1996004379A9/en

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    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K16/00Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies
    • C07K16/18Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans
    • C07K16/22Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against growth factors ; against growth regulators
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K14/00Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/435Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
    • C07K14/475Growth factors; Growth regulators
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K39/00Medicinal preparations containing antigens or antibodies

Definitions

  • the present invention relates generally to the field of cancer and also to polypeptides with growth-promoting activities.
  • the invention is particularly directed to the identification of a growth factor, primarily from bone and prostate tissues, that has the capability to stimulate the growth of prostate cells and which promotes the metastasis of prostate cancer to bone tissues.
  • the invention is further directed to novel in vivo and in vi tro assay methods, both to detect and quantitate such growth factor activity, and to screen for potential anti- cancer therapeutic substances. The preparation and use of monoclonal antibodies against such growth factors is also disclosed.
  • prostate cancer both the most prevalent cancer, and the second leading cause of cancer deaths, in men (Carter & Coffey, 1990). Most patients dying of prostate cancer experience painful and sometimes crippling osseous metastases with up to 84% having bony metastases at autopsy (Franks, 1956).
  • Prostate cancer is known to selectively spread to the cancellous bones of the axial skeleton, where it is the only malignancy to consistently produce osteoblastic lesions (Cook & Watson, 1968). Metastatic growth of prostate cancer in bone marrow is rapid and virulent, in contrast, growth of primary prostate cancer is generally slower, suggesting that interaction between prostate and bone cells may lead to enhance prostate cancer cell seeding and rapid growth (Rossi et al., 1992, Chung, et al., 1992 ). The treatment strategies available for patients with metastatic prostate cancer have, in the past, focused primarily on androgen deprivation and/or radiation therapy. Such therapeutic modalities have palliative value, but have not resulted in cure or significant increases in patient survival rate.
  • prostate cancer cells selectively seed the lumbar spine and pelvis via a paravertebral venous plexus through which
  • prostate cancer cell growth may be under autocrine influences involving androgen-mediated regulation of TGF- ⁇ , EGF receptor, or bFGF (Wilding et al., 1989; Nonomura et al., 1988; Lu et al., 1989). It has also been suggested that paracrine-mediated pathways involving the stromal compartment play a role in prostate cancer progression (Camps et al., 1990; Chung et al., 1989; Chackel-Roy et al., 1989; Kabalin et al., 1989). Clinically, the interaction between prostate cancer cells and osteoblasts is apparent from the enhanced growth rate of bony metastatic lesions and accompanying osteoblastic
  • BFGF Mydlo et al., 1988; Story et al., 1987.
  • Prostatic osteoblastic factor a soluble substance found in benign hyperplastic and malignant prostatic tissue that stimulates
  • osteoblasts may well be a FGF-like substance (Jacobs et al., 1979; Nishi et al., 1988), although it may be a distinct and as yet undefined growth factor (Perkel et al., 1990).
  • prostatic carcinogenesis prostatic carcinogenesis, progression and nonrandom metastasis remain poorly defined.
  • the actions of those few growth factors which have been shown to stimulate prostate cell growth in vi tro have not been examined in vivo .
  • the identification of growth, factor (s) which exhibit prostate cell growth promoting activity in vivo would be an important development, creating new avenues of clinical investigation and treatment.
  • the present invention is directed to the identification and characterization of novel growth factors, primarily present in bone tissues, but also present in prostate tissues, that have the capability to promote normal prostate cell growth and prostate cancer cell growth and metastases.
  • the invention is further directed to novel in vivo assay methods, both for the identification of factors which promote prostate cancer cell growth, and to the identification of potential therapeutic compounds for use in treatment strategies.
  • This invention further concerns bone and prostate derived growth factor (BPGF) genes and nucleic acid segments, proteins, peptides, and related compositions, and methods of making and using such genes and proteins, for example in various diagnostic and treatment
  • BPGF bone and prostate derived growth factor
  • nucleic probes and primers are also provided.
  • vectors are also provided.
  • the present invention further encompasses the generation of monoclonal and polyclonal antibodies directed against these growth factor polypeptides and their use in cancer diagnosis and treatment.
  • the present invention concerns the substantial purification of such prostate cell growth-promoting factor (s) from human bone tissues.
  • substantially purified human growth factor refers to a growth factor composition, isolatable from human bone fibroblasts, from which has been removed various non-growth-promoting components, and which composition substantially retains its prostate cell growth promoting activity.
  • FIG. 1 A particularly preferred source for isolating such growth factors is the cell-conditioned media obtained from human bone or prostate fibroblasts.
  • Such conditioned media were chosen by the inventors as a potential sources of prostate cell growth factors because of the frequent metastasis of prostate cancer to the axial skeleton.
  • the human bone fibroblast conditioned media was found to be a particularly rich source of growth factors, it is contemplated to be the preferred starting material for the purification of such growth factors.
  • other starting materials may also be employed such as, for example, human prostate cancers, human osteogenic sarcomas, or bone marrow aspirates, preferably obtained from prostate cancer patients.
  • the preferred approach used to isolate such growth factors involves first culturing human bone fibroblasts to produce the human growth factor polypeptides. After obtaining the growth factor polypeptides, for example, by removing conditioned media from the cells, the resultant cell-free polypeptides can then be assayed, characterized and used as a starting material for further purification of the growth factors. During the purification process, it is contemplated that assays will be conducted at various intervals using any one of, or a combination of, the assays methods disclosed herein.
  • the method preferred by the present inventors to obtain a substantially purified human growth factor in accordance herewith is affinity chromatography, and in particular, affinity chromatography employing a heparin sepharose column. To perform heparin sepharose
  • chromatography in this manner one would first pass a sample of the cell-free growth factor polypeptides, for example, as contained within conditioned media, over the column in a low salt containing buffer, such as lOmM Tris/Hcl, lmM PMSF, pH 7.4, to allow binding to the column, and then wash the column with the same buffer to remove any non-binding species.
  • the components that bind to the column can be eluted using the above buffer with an increased salt concentration, such as 1 M or 2 M NaCl, or by employing a buffered salt gradient, for example, of 0-3 M NaCl.
  • the active fractions can be identified, and such fractions selected and pooled.
  • the growth factors of the present invention are proposed to have utility in a variety of embodiments. Importantly, they are contemplated to be of use in vivo in stimulating the growth of prostate grafts. Also, in that the tumor formed under the stimulation of these growth factors was found to be extremely angiogenic, the growth factors of the present invention are also reasoned to be powerful angiogens, and as such are contemplated to have utility in further clinical embodiments. These include, for example, the promotion of wound healing, organ growth and/or regeneration, and the promotion of epithelial sprouting.
  • the growth factors can be used either alone, or in conjunction with other components, in novel tissue culture media. Although preferred, there is no general requirement that the growth factors be provided in their most purified state for use in such embodiments, indeed, it is contemplated that conditioned media
  • containing the growth factors could be suitably directly employed in tissue culture protocols.
  • Assays for prostate cell growth Various methods are contemplated to be of use in determining prostate cell growth, i.e., for use in assaying the activity of prostate growth-promoting factors. In preferred embodiments, it is contemplated that such assays may be directed to analyzing the growth of prostate cancer cells, rather than normal prostate cells, simply as a matter of convenience. Such assays include, but are not limited to, in vi tro assays such as the uptake and elution of crystal violet dye; the MTT assay for staining and quantitation of live cells in a culture dish; or the incorporation of radioactive, or non-radioactive labels, such as 3 H-thymidine, or bromodeoxy uridine, respectively, into TCA-precipitable cellular DNA.
  • vi tro assays such as the uptake and elution of crystal violet dye
  • MTT assay for staining and quantitation of live cells in a culture dish
  • radioactive, or non-radioactive labels such as 3 H-thym
  • a preferred in vi tro assay for use in accordance with the present invention is contemplated to be the soft agar colony-forming assay.
  • the soft agar colony-forming assay is an indication of transformation, as only
  • transformed cell types can grow in soft agar.
  • Methods of conducting an assay of this kind will be known to those of skill in the art in light of the present disclosure. For example, one could first place placing agar, such as 0.6% (w/v) agar, into the bottom of each well on a plate, and seed the wells with an appropriate number of NbE-1 cells, such as 2,000 cells.
  • a feeder layer of less concentrated agar, such as 0.3 to 0.4% (w/v) agar, containing the potential growth factor substances to be analyzed, would then be placed on top of the cells, from which the candidate substances can diffuse and come into contact with the cells. The number of soft agar colonies subsequently formed would be recorded after an assay of this kind.
  • Both the cells and the agar could then be prepared and resuspended in media such as T-medium containing approximately between 5 and 10% foetal calf serum if desired.
  • a particularly important aspect of the present invention is the development of a novel in vivo assay for prostate cancer growth promoting activity.
  • compositions which method therefore allows the inductive capabilities of any cell type, conditioned media, growth factor, hormone, carcinogen, or indeed, any substance one desires, to be examined following the co-administration of the substance and LNCaP cells, or other non- tumorigenic human cells, to mice.
  • LNCaP cells for use in such an assay are particularly preferred as such cells have certain advantageous features.
  • LNCaP cells produce prostate specific antigen (PSA), a human tissue-specific tumor marker, which can be as one method to monitor in vivo prostate cancer cell growth.
  • PSA prostate specific antigen
  • LNCaP cells are the only androgen-responsive human prostate cancer cells that can be consistently grown in vi tro . This is an important aspect of the invention that allows one to conduct parallel in vi tro and in vivo assays of various compounds using the same prostate cancer cell types.
  • suitable athymic mice such as 6-8 week old BALB/c mice, with a number of LNCaP cells and an approximately equivalent number of cells of the cell type to be investigated (herein
  • the subject cell type Virtually any mode of co-inoculation is considered to be appropriate such as subcutaneous, intravenous, or intraperitoneal injection.
  • the administration of 1 x 10 5 to 5 x 10 6 cells per inoculant of each cell type is preferred, with the administration of 1 x 10 6 LNCaP cells and 1 x 10 6 of the subject cells being particularly preferred.
  • FBS foetal bovine serum
  • the tumors can be measured at regular intervals and their volumes calculated
  • L x W x H x 0.5236 (Janek et al., 1975).
  • the tumors may be excised, weighed, and subjected to various morphological and biochemical analyses as desired.
  • the choice of LNCaP cells by the inventors also allows the serum levels PSA to be used as an indication of tumor
  • the present invention provides modifications of this in vivo assay model which have been developed to allow the
  • This modified method is based upon the adsorption of a concentrated substance onto a solid matrix and the co-administration of the matrix and LNCaP cells to the experimental animal.
  • the adsorbed matrix serves as a reservoir for delivery of the particular substance to the live animal. It is contemplated that this method will be particularly useful for analyzing substances such as conditioned media from various cell types and the partially and fully purified growth factors.
  • a particularly preferred matrix for use in such embodiments is' Gelfoam which is commercially available from Upj ohn (Kalamazoo , MI), although it is believed that any sponge-like matrix, such as, for example, Matrigel, or even agar or agarose, may be employed.
  • a suitable control for an assay such as this would be inoculation with Gelfoam presoaked with collagen IV alone.
  • the present invention further provides an important model for use in screening for compounds with the potential to inhibit . the growth of human prostate cancer.
  • the test substance may be administered either simultaneously with, or subsequent to, the administration of the cancer promoting agents, i.e., the LNCaP cells and the previously identified stimulatory cells or
  • BPGF-1 bone and prostate derived growth factor
  • DNA segment refers to a DNA molecule that has been isolated free of total genomic DNA of a particular species. Therefore, a DNA segment encoding bone and prostate derived growth factor (BPGF) refers to a DNA segment that contains BPGF coding sequences yet is isolated away from, or purified free from, total human genomic DNA. Included within the term “DNA segment”, are DNA segments and smaller fragments of such segments, and also recombinant vectors, including, for example, plasmids, cosmids, phage, viruses, and the like.
  • BPGF bone and prostate derived growth factor
  • a DNA segment comprising an isolated or purified BPGF gene refers to a DNA segment including BPGF coding sequences and, in certain aspects, regulatory sequences, isolated substantially away from other
  • gene is used for simplicity to refer to a functional protein, polypeptide or peptide encoding unit.
  • this functional term includes both genomic
  • sequences cDNA sequences and smaller engineered gene segments that express, or may be adapted to express, proteins, polypeptides or peptides.
  • isolated substantially away from other coding sequences means that the gene of interest, in this case
  • BPGF forms the significant part of the coding region of the DNA segment, and that the DNA segment does not contain large portions of naturally-occurring coding DNA, such as large chromosomal fragments or other functional genes or cDNA coding regions.
  • the invention concerns isolated DNA segments and recombinant vectors
  • the invention concerns isolated DNA segments and recombinant vectors incorporating DNA sequences that encode BPGF that includes within its amino acid sequence the amino acid sequence of SEQ ID NO : 2 , corresponding to BPGF.
  • amino acid and nucleic acid sequences may include additional residues, such as additional N- or C-terminal amino acids or 5' or 3' sequences, and yet still be essentially as set forth in one of the sequences disclosed herein, so long as the sequence meets the criteria set forth above, including the maintenance of biological protein activity where protein expression is concerned.
  • terminal sequences particularly applies to nucleic acid sequences that may, for example, include various non- coding sequences flanking either of the 5' or 3 ' portions of the coding region or may include various internal sequences, i.e., introns, which are known to occur within genes.
  • nucleic acid sequences that are "complementary" are those that are capable of base-pairing according to the
  • complementary sequences means nucleic acid sequences that are substantially complementary, as may be assessed by the same nucleotide comparison set forth above, or as defined as being capable of
  • this invention is not limited to the particular nucleic acid and amino acid sequences of SEQ ID NOS : 1 and 2.
  • Recombinant vectors and isolated DNA segments may therefore variously include the BPGF coding regions themselves, coding regions bearing selected alterations or modifications in the basic coding region, or they may encode larger polypeptides that nevertheless include BPGF-coding regions or may encode biologically functional equivalent proteins or peptides that have variant amino acids sequences.
  • the DNA segments of the present invention encompass biologically functional equivalent BPGF proteins and peptides. Such sequences may arise as a consequence of codon redundancy and functional equivalency that are known to occur naturally within nucleic acid sequences and the proteins thus encoded. Alternatively,
  • changes in the protein structure may be engineered, based on considerations of the properties of the amino acids being exchanged.
  • Changes designed by man may be introduced through the application of site- directed mutagenesis techniques, e.g., to introduce improvements to the antigenicity of the protein or to test BPGF mutants in order to examine growth promoting activity at the molecular level.
  • site- directed mutagenesis techniques e.g., to introduce improvements to the antigenicity of the protein or to test BPGF mutants in order to examine growth promoting activity at the molecular level.
  • one may also prepare fusion proteins and peptides, e.g., where the BPGF coding regions are aligned within the same expression unit with other proteins or peptides having desired functions, such as for
  • purification or immunodetection purposes e.g., proteins that may be purified by affinity chromatography and enzyme label coding regions, respectively.
  • DNA segments encoding relatively small peptides such as, for example, peptides of from about 15 to about 50 amino acids in length, and more preferably, of from about 15 to about 30 amino acids in length; and also larger polypeptides up to and including proteins corresponding to the full-length sequences set forth in SEQ ID NO: 2.
  • DNA segments are exemplified by, but not limited to, DNA segments that have nucleic acid sequences in accordance with the sequence of SEQ ID NO:1.
  • Recombinant vectors form important further aspects of the present invention.
  • Particularly useful vectors are contemplated to be those vectors in which the coding portion of the DNA segment, whether encoding a full length protein or smaller peptide, is positioned under the control of a promoter.
  • the promoter may be in the form of the promoter that is naturally associated with BPGF gene(s), e.g., in human cells, as may be obtained by isolating the 5' non-coding sequences located upstream of the coding segment or exon, for example, using
  • a recombinant or heterologous promoter is intended to refer to a promoter that is not normally associated with a BPGF gene in its natural environment.
  • Such promoters may include CMV promoters normally associated with other genes, and/or promoters isolated from any other bacterial, viral, eukaryotic, or mammalian cell.
  • CMV promoters normally associated with other genes
  • promoter and cell type combinations for protein expression is generally known to those of skill in the art of molecular biology, for example, see Sambrook et al. (1989).
  • the promoters employed may be constitutive, or inducible, and can be used under the appropriate conditions to direct high level expression of the introduced DNA segment, such as is advantageous in the large-scale production of recombinant proteins or peptides.
  • Appropriate promoter systems contemplated for use in high-level expression include, but are not limited to, CMV, adenovirus, the T7 RNA polymerase promoter system described by Tabor & Richardson (1985) and the maltose binding protein-fusion protein system (Guan et al . , 1987; Nagai & Thogersen, 1987).
  • DNA segments that encode peptide antigens from about 15 to about 50 amino acids in length, or more preferably, from about 15 to about 30 amino acids in length are contemplated to be particularly useful.
  • DNA segments encoding peptides will generally have a minimum coding length in the order of about 45 to about 150, or to about 90 nucleotides.
  • DNA segments encoding full length proteins may have a minimum coding length in the order of about 1620 nucleotides for a protein in accordance with SEQ ID NO:1.
  • the nucleic acid sequences disclosed herein also have a variety of other uses. For example, they also have utility as probes or primers in nucleic acid hybridization embodiments.
  • the present invention concerns the generation of antibodies, and particularly, monoclonal antibodies (mAbs) against the growth factor polypeptide (s) disclosed herein.
  • mAbs will have utility in a variety of applications. These include, for example, the rapid purification of the growth factors by immunoaffinity chromatography, and the clinical use of mAbs or mAb-conjugates in diagnostic, prognostic,
  • the in vivo human prostate cancer model disclosed herein is contemplated to be particularly useful in testing mAbs to identify those that are suitable for clinical use. For example, one may test the ability of mAbs or mAb-conjugates to inhibit prostate cancer growth or metastasis in the mouse model, prior to clinical trials in human subjects. It will be understood,
  • mAbs which are not considered to meet the criteria for clinical use may nonetheless have utility in other embodiments, such as in growth factor purification by affinity column chromatography or in Western blotting, ELISA, or other immunological screening assays. It is proposed that such anti-growth factor mAb generation may be achieved most readily through the use of a modified immunization protocol. It is contemplated that the initial immunization of an experimental animal, such a mouse, would be performed according to the standard practice in the art. However, for the booster inoculation, the use of the following method is proposed to be advantageous in that it will allow the optimal exposure of splenocytes to the booster antigen.
  • mice should be surgically opened to expose the spleen and a sterile solution of the growth factor antigens be injected directly into the spleen. The mouse would then be sutured and allowed to recover. Blood samples of the immunized mice may be analyzed for the presence of circulating antibodies to the growth factors, and those mice producing reasonable titers of circulating antibodies would be sacrificed and their spleens will be removed for cell fusion.
  • a mouse myeloma cell line proposed to be of use for hybridization is the 8-azaguanine-resistant mouse murine myeloma SP2/0
  • non-producer cell line which is known to be HAT
  • Cells may be fused according to any of the methods known in the art, such as, by using polyethylene glycol (PEG), and later screened for antibody production, for example, by employing an ELISA or immunoblot
  • PEG polyethylene glycol
  • the invention concerns isolated DNA segments and recombinant vectors
  • the proteins encoded may be full length proteins, as represented by the 724 amino acids of the BPGF protein.
  • Any of the DNA segments of BPGF may encode peptides of from about 15 to about 50, or more preferably, from about 15 to about 30 amino acids in length.
  • Peptides may, of course, be of any length in this range, such as 16, 17, 18, 19 or 20 amino acids, or about 25, about 30, about 35, about 40, about 45 or about 50 amino acids in length, with "about", in this one context meaning a range of from 1 to 4 amino acids longer or shorter than the stated length .
  • the DNA segments encoding such peptides will have coding lengths, excluding any regulatory sequences, of between about 45 to about 150, or preferably, of 45 to about 90, base pairs, with any length within or around these general guidelines being contemplated.
  • sequence essentially as set forth by a contiguous sequence from SEQ ID NO: 2 means that the sequence substantially corresponds to a contiguous portion of SEQ ID NO: 2 and has relatively few amino acids that are not identical to, or a biologically functional equivalent of, the amino acids of SEQ ID NO: 2.
  • biologically functional equivalent is well understood in the art and is further defined in detail later herein. Accordingly, sequences that have between about eg., 70% and about 80%; or more preferably, between about 81% and about 90%; or even more preferably, between about 91% and about 99%; of amino acids that are identical or
  • the invention concerns isolated DNA segments and recombinant vectors that include within their sequence a nucleic acid sequence essentially as set forth by a contiguous sequence from the sequence SEQ ID NO:1, preferably, as set forth by a contiguous sequence from coding regions of SEQ ID NO:1.
  • the term "essentially as set forth by a contiguous sequence from SEQ ID NO:1" is used in the same sense as described above and means that the nucleic acid sequence substantially corresponds to a contiguous portion of SEQ ID NO:1 and has relatively few codons that are not identical to, or functionally equivalent with, the codons of SEQ ID NO:1.
  • the term “functionally equivalent codon” is used herein to refer to codons that encode the same amino acid, such as the six codons for arginine or serine, and also refers to codons that encode
  • amino acid and nucleic acid sequences may include additional residues, such as additional N- or C-terminal amino acids or 5' or 3' nucleic acid sequences, and yet still be essentially as set forth in one of the sequences disclosed herein, so long as the sequence meets the criteria set forth above, including the production of a BPGF protein, where protein expression is concerned.
  • the addition of terminal sequences particularly applies to nucleic acid sequences that may, for example, include various non-coding sequences flanking either of the 5' or 3' portions of the coding region or may include various internal sequences, i.e., introns, which are known to occur within genes.
  • nucleic acid sequences that constitute regulatory regions such as promoters and/or enhancers
  • 5' nucleic acid sequences that constitute regulatory regions such as promoters and/or enhancers
  • the present invention also encompasses DNA segments that are complementary, or essentially complementary, to the sequence set forth in SEQ ID NO:1, or contiguous stretches thereof.
  • Nucleic acid sequences that are "complementary" are those that are capable of base-pairing according to the standard Watson-Crick complementarity rules. As used herein, the term
  • complementary sequences means nucleic acid sequences that are substantially complementary, as may be assessed by the same nucleotide comparison set forth above, or as defined as being capable of hybridizing to the nucleic acid segment of SEQ ID NO:1 under relatively stringent conditions such as those described in example 4.
  • nucleic acid segments of the present invention may be combined with other DNA sequences, such as
  • restriction enzyme sites multiple cloning sites, other coding segments, and the like, such that their overall length may vary considerably. It is therefore
  • DNA segments of the invention may include within their sequence a nucleic acid sequence that is
  • the invention provides protein and peptide-encoding segments of DNA that may be taken from any contiguous stretch of the coding sequences, such as from position 694 to position 2314 of SEQ ID NO:1, for BPGF peptides and proteins.
  • nucleic acid and amino acid sequences disclosed herein is virtually unlimited, so long as the sequences are isolated free from their natural
  • BPGF protein or DNA sequences may therefore include BPGF protein encoding regions in combination with other functional sequences.
  • nucleic acid segments of the present invention will have numerous uses, for example, in connection with the expression of peptides or
  • Probes and primers based upon, or designed from, SEQ ID NO:1, will have use in various hybridization embodiments, regardless of whether they encode proteins or peptides or whether they are derived from non-coding segments. Nucleic acid segments that incorporate at least a 10-14 or 20 nucleotide long stretch that
  • SEQ ID NO:1 corresponds to a sequence within SEQ ID NO:1 may be employed as a selective hybridization probe.
  • Such probes may be used for the detection of BPGF sequences in selected samples or to screen clone banks to identify clones that comprise corresponding or related sequences.
  • the detection of BPGF sequences in samples, particularly in clinical samples, represents an important utility of the present invention as detection of BPGF is important in and of itself, and also as diagnosis of an increased risk of bone metastases and is a first element in designing an appropriate treatment regimen for a given disease or disorder.
  • This invention thus also provides molecular
  • Samples that may be analyzed include those such as biopsy of prostate or bone, or other tissue in which BPGF has activity
  • nucleic acids from the sample and contact the nucleic acids with a nucleic acid segment that encodes a BPGF protein or peptide, under conditions effective to allow hybridization of substantially
  • substantially complementary nucleic acid sequence in a sample or a significantly increased level of such a sequence in comparison to the levels in a normal or
  • control sample will thus be indicative of a sample that may show enhanced proliterative ability.
  • a substantially complementary nucleic acid sequence, or a significantly increased level thereof is detected in a clinical sample from a patient suspected of having prostate cancer, this will be indicative of a patient that may be susceptible to increased bone metastatic growth.
  • increase levels is used to describe a significant increase in the amount of BPGF nucleic acids detected in a given sample in comparison to that observed in a control sample, e.g., an equivalent sample from a normal healthy subject.
  • hybridization techniques and systems are known that can be used in connection detecting BPGF, including diagnostic assays such as those described in Falkow et al., U.S. Patent 4,358,535.
  • Short coding or non-coding nucleic acid segment probes may also be employed as primers in connection with diagnostic PCR technology, as well as for use in any of a number of other PCR applications, including PCR-based cloning and engineering protocols.
  • the "detection" of a BPGF sequence is accomplished by attaching or incorporating a detectable label into the nucleic acid segment used as a probe and "contacting" a sample with the labeled probe.
  • an effective amount of a nucleic acid segment that comprises a detectable label (a probe) is brought into direct juxtaposition with a composition containing target nucleic acids.
  • Hybridized nucleic acid complexes may then be identified by detecting the presence of the label, for example, by detecting a radio, enzymatic, fluorescent, or even chemiluminescent label.
  • BPGF nucleic acids Many suitable techniques for use in the detection of BPGF nucleic acids will be known to those of skill in the art, these include, for example, in situ hybridization, Southern blotting and Northern blotting. In situ hybridization, Southern blotting and Northern blotting.
  • hybridization describes the techniques wherein the target nucleic acids contacted with the probe sequences are those located within one or more cells, such as cells within a clinical sample or even cells grown in tissue culture.
  • the cells are prepared for hybridization by fixation, e.g. chemical fixation, and placed in conditions that allow for the hybridization of a detectable probe with nucleic acids located within the fixed cell.
  • target nucleic acids may be separated from a cell or clinical sample prior to contact with a probe. Any of the wide variety of methods for isolating target nucleic acids may be employed, such as cesium chloride gradient centrifugation, chromatography (e.g., ion, affinity, magnetic), phenol extraction and the like. Most often, the isolated nucleic acids will be separated, e.g., by size, using electrophoretic separation, followed by immobilization onto a solid matrix, prior to contact with the labelled probe. These prior separation
  • sequences from SEQ ID NO : 1 will have utility as
  • hybridization probes or primers will be useful in a variety of hybridization embodiments, which also include Southern and Northern blotting in connection with analyzing BPGF expression in various mammalian cells.
  • the total size of fragment, as well as the size of the complementary stretch (es), will ultimately depend on the intended use or application of the particular nucleic acid segment. Fragments generally finding use in hybridization embodiments may have lengths of
  • the present invention also concerns recombinant host cells that include one or more DNA segments that comprise an isolated BPGF gene, as described herein. It is contemplated that virtually any cell may be employed as a recombinant host cell, but that certain advantages may be found in using a bacterial host cell, such as, for example, in the ease of cell growth and manipulation. Examples of preferred bacteria for use as recombinant host cells include, for example, E. coli. However, expression in eukaryotic cells is also contemplated, and exemplary cell lines that may be used include all those typically employed for eukaryotic expression, such as 239, AtT-20, HepG2, VERO, HeLa, CHO, WI 38, BHK, COS-7, RIN and MDCK cell lines.
  • the recombinant host cells of the invention may be employed to either propagate the vector and/or to express the various peptides and proteins described herein, allowing the encoded components to be obtained
  • recombinant host cells are those capable of expressing peptides and proteins with sequences essentially as set forth in SEQ ID NO:1.
  • DNA segments of the present invention are incorporated into appropriate vector sequences that may, e.g., improve the efficiency of transfection of host cells.
  • bacterial host cells it is proposed that virtually any vector known in the art to be appropriate for the selected host cell may be employed.
  • plasmid vectors such as pBR322, or bacteriophages such as ⁇ GEM-11. Further examples will be known to those of skill in the art, as exemplified in Sambrook et al.
  • the recombinant host cells may be employed in connection with "overexpressing" BPGF proteins or peptides, that is, increasing expression over the natural expression levels in human or other mammalian cells, and may lead to the production of large quantities of proteins. Overexpression may be assessed by a variety of methods, including radio-labelling and/or protein
  • BPGF proteins or peptides from cells whether native or recombinant.
  • one method involves applying dialyzed bone fibroblast conditioned medium to a heparin sepharose affinity column, which was previously
  • the present invention further provides protein or peptide compositions, free from total bacterial cells, comprising purified BPGF protein or peptide that includes an amino acid sequence essentially as set forth by a contiguous sequence from SEQ ID NO:1.
  • Such compositions may be obtained from natural or recombinant sources and may include proteins or peptides, proteins and peptides, or BPGF compositions alone, obtainable from recombinant hosts.
  • the compositions may include full length BPGF proteins, and/or various peptides that include sequences in accordance with a 15 to about 50, or more preferably, to about 30 amino acid long sequence from SEQ ID NO:1.
  • the present invention thus also provides methods of generating an immune response, which methods generally comprise administering to an animal, including a human subject, a pharmaceutically acceptable composition comprising an immunologically effective amount of a BPGF protein or peptide composition.
  • a pharmaceutically acceptable composition comprising an immunologically effective amount of a BPGF protein or peptide composition.
  • the composition may include partially or significantly purified BPGF proteins or peptides, obtained from natural or recombinant
  • epitopes such as those between about 30 and about 50 amino acids in length will often be preferred.
  • immunologically effective amount is meant an amount of a bone and prostate derived growth factor protein or peptide composition that is capable of
  • an immune response in the recipient animal This includes both the generation of an antibody response (B cell response), and/or the stimulation of a cytotoxic immune response (T cell response).
  • B cell response an antibody response
  • T cell response a cytotoxic immune response
  • the generation of such an immune response will have utility in both the production of useful bioreagents, e.g., CTLs and, more particularly, reactive antibodies, for use in diagnostic embodiments, and will also have utility in various prophylactic or therapeutic embodiments.
  • Another means contemplated by the inventors for generating an immune response in an animal includes administering to the animal, or human subject, a
  • compositions comprising an immunologically effective amount of a BPGF factor nucleic acid composition (i.e., an amount capable of stimulating a B cell and/or T cell response).
  • a BPGF factor nucleic acid composition i.e., an amount capable of stimulating a B cell and/or T cell response.
  • CTL cytotoxic T lymphocyte
  • antibodies useful in the detection of BPGF detection may comprise whole growth factor proteins or antigenic peptide fragments from these proteins.
  • antigenic functional equivalents of the proteins and peptides described herein also fall within the scope of the present invention.
  • An "antigenically functional equivalent" protein or peptide is one that incorporates an epitope that is immunologically cross-reactive with one or more epitopes of the bone and prostate growth factor proteins.
  • Antigenically functional equivalents, or epitopic sequences may be first designed or predicted and then tested, or may simply be directly tested for cross-reactivity.
  • epitopes, and/or functional equivalents, that are suitable for use in immunoformulations, or simply as antigens (e.g., for use in detection protocols), is a relatively straightforward matter.
  • the methods described in several other papers, and software programs based thereon, can also be used to identify epitopic core sequences, for example, Chou and Fasman (1974a, b; 1978a, b; 1979); address this subject.
  • the amino acid sequence of these "epitopic core sequences" may then be readily incorporated into peptides, either through the application of peptide synthesis or
  • immunologically cross-reactive with one or more epitopes of the BPGF protein is also a straightforward matter. This can be readily determined using specific assays, e.g., of a single proposed epitopic sequence, or using more general screens, e.g., of a pool of randomly
  • the screening assays may be employed to identify either equivalent antigens or cross-reactive antibodies. In any event, the principle is the same, i.e., based upon competition for binding sites between antibodies and antigens. Suitable competition assays that may be employed include protocols based upon immunohistochemical assays, ELISAs, RIAs, Western or dot blotting and the like. In any of the competitive assays, one of the binding
  • test components generally the known element, such as BPGF protein or peptide, or the known antibody, such as a polyclonal antibody as set forth in SEQ ID NO: 3, SEQ ID NO: 4 or SEQ ID NO: 5, will be labeled with a detectable label and the test components, that generally remain unlabeled, will be tested for their ability to reduce the amount of label that is bound to the corresponding reactive antibody or antigen.
  • BPGF blood pressure
  • a detectable label such as, e.g., biotin or an enzymatic, radioactive or fluorogenic label
  • the known antibody would be immobilized, e.g., by attaching to an ELISA plate.
  • the ability of the mixture to bind to the antibody would be determined by detecting the presence of the specifically bound label. This value would then be compared to a control value in which no potentially competing (test) antigen was included in the incubation.
  • the assay may be any one of a range of immunological assays based upon hybridization, and the reactive
  • antigens would be detected by means of detecting their label, e.g., using streptavidin in the case of
  • biotinylated antigens or by using a chromogenic substrate in connection with an enzymatic label or by simply detecting a radioactive or fluorescent label.
  • An antigen that binds to the same antibody as BPGF, for example, will be able to effectively compete for binding to the anti-peptide polyclonal antisera and thus will
  • the invention concerns relatively purified antibodies that bind to, or have binding affinity for BPGF proteins or peptides.
  • Such relatively purified antibodies may be polyclonal or monoclonal and are distinct from those compositions that may be found in nature, e.g., as represented by the sera of an individual afflicted with prostate cancer, by virtue of their increased degree of purity. Even a polyclonal antibody raised in response to immunization with a purified, or enriched BPGF protein composition will be significantly distinct from the sera of an infected individual that contains a great diversity of antibodies.
  • Antibodies that are cross-reactive with the anti-peptide antisera are also encompassed by the invention, as may be identified by employing a competition binding assay, such as those described above in terms of antigen competition.
  • Antibodies of the invention may also be linked to a detectable label, such as a radioactive, fluorogenic or a nuclear magnetic spin resonance label.
  • Biolabels such as biotin and enzymes that are capable of generating a colored product upon contact with a chromogenic substrate are also contemplated.
  • Exemplary enzyme labels include alkaline phosphatase, hydrogen peroxidase and glucose oxidase enzymes.
  • the present invention concerns immunodetection methods and associated kits. It is contemplated that the BPGF proteins or peptides of the invention may be employed to detect antibodies having reactivity therewith, or, alternatively, antibodies prepared in accordance with the present invention, e.g., the peptide antibodies, may be employed to detect BPGF proteins or peptides. Either type of kit may be used in the immunodetection of compounds, present within clinical samples, that are indicative of prostate cancer or bone metastases. The kits may also be uses in antigen or antibody purification, as appropriate.
  • immunodetection methods will include first obtaining a sample suspected of containing such a protein, peptide or antibody, such as a biological sample from a patient, and contacting the sample with a first protein or peptide that is BPGF, or a first antibody that binds to a BPGF protein or peptide, as the case may be, under conditions effective to allow the formation of an immunocomplex (primary immune complex). One then detects the presence of any primary immunocomplexes that are formed.
  • the sample composition such as a tissue section, ELISA plate, dot blot or western blot, will generally be washed to remove any non-specifically bound antigen or antibody species, allowing only those specifically bound species within the immune complexes to be detected.
  • Detection of primary immune complexes is generally based upon the detection of a label or marker, such as a radioactive, florigenic, biological or
  • BPGF BPGF
  • antibody e.g., anti-peptide antibodies
  • the primary immune complexes may be detected by means of a second binding ligand that is linked to a detectable label and that has binding affinity for the first protein, peptide or antibody.
  • the second binding ligand is itself often an antibody, which may thus be termed a "secondary" antibody.
  • the primary immune complexes are contacted with the labeled,
  • secondary binding ligand, or antibody under conditions effective and for a period of time sufficient to allow the formation of secondary immune complexes.
  • the secondary immune complexes are then generally washed to remove any non-specifically bound labelled secondary antibodies or ligands, and the remaining bound label is then detected.
  • proteins, peptides or antibodies sought to be detected may be employed.
  • Exemplary samples include clinical samples obtained from a patient such as blood or serum samples, prostate or bone biopsy samples, or other tissue samples.
  • clinical samples obtained from a patient such as blood or serum samples, prostate or bone biopsy samples, or other tissue samples.
  • non- clinical samples such as in the titering of antigen or antibody samples, in the selection of hybridomas, and the like.
  • kits that may be employed to detect the presence of BPGF factor proteins, peptides and/or antibodies in a sample.
  • kits in accordance with the present invention will include a suitable BPGF protein or peptide, or a first antibody that binds to a the BPGF protein or peptide, together with an immunodetection reagent, and a means for
  • the immunodetection reagent will typically comprise a label associated with the protein, peptide or antibody, or associated with a secondary binding ligand.
  • exemplary ligands might include a secondary antibody directed against the first protein, peptide or antibody, or a biotin or avidin (or streptavidin) ligand having an associated label.
  • Detectable labels linked to antibodies that have binding affinity for a human antibody are also contemplated, e.g., for protocols where the first reagent is a protein that is used to bind to a reactive antibody from a human sample.
  • the kits may contain antigen or antibody- label conjugates either in fully conjugated form, in the form of intermediates, or as separate moieties to be conjugated by the user of the kit.
  • the container means will generally include at least one vial, test tube, flask, bottle, syringe or other container means, into which the antigen or antibody may be placed, and preferably suitably allocated. Where a second binding ligand is provided, the kit will also generally contain a second vial or other container into which this ligand or antibody may be placed.
  • the kits of the present invention will also typically include a means for containing the vials in close confinement for commercial sale, such as, e.g., injection or blow-molded plastic containers into which the desired vials are retained.
  • Antisense RNA technology has been developed as one approach to inhibiting gene expression, particularly oncogene expression.
  • RNA molecules are one which contains the complement of, and can therefore hybridize with, protein-encoding RNAs of the cell. It is believed that the hybridization of antisense RNA to its cellular RNA complement can prevent expression of the cellular RNA, perhaps by limiting its translatability. While various studies have involved the processing of RNA or direct introduction of antisense RNA oligonucleotides to cells for the inhibition of gene expression (Brown, et al., 1989; Wickstrom, et al., 1988; Smith, et al.,
  • Antisense technology has also been applied in attempts to inhibit the expression of various oncogenes.
  • Kasid, et al., 1989 report the preparation of recombinant vector construct employing Craf-1 cDNA fragments in an antisense orientation, brought under the control of an adenovirus 2 late promoter. These authors report that the introduction of this recombinant
  • inhibition or suppression of BPGF-1 gene expression is desired and antisense molecules will be employed.
  • the construct will act to inhibit or suppress the ultimate expression of the target gene, presumably by binding to the target RNA and thereby preventing its translation.
  • FIG. 1 Histomorphological and immunohistochemical characterization of fibroblast-induced LNCaP chimeric tumors. Hematoxylin and eosin-stained sections (a-c) reveal differences between LNCaP/rUGM tumors in male (a) and female (b) hosts, the former a carcinosarcoma, the latter a pure sarcoma with no epithelial component.
  • LNCaP/MS tumors formed only in male hosts and histologically are vascular carcinomas with a minor mesenchymal component.
  • Immunohistochemical staining with monoclonal antibodies against PSA demonstrates intense and generalized staining of the epithelial cells in only male LNCaP/rUGM (d) and LNCaP/MS (f) tumors but not of the sarcomatoid LNCaP/rUGM tumors (e) in female mice.
  • LNCaP/3T3 tumors are sarcomas histologically similar to LNCaP/rUGM tumors in females and also stained negatively for PSA.
  • fibroblast-induced LNCaP chimeric tumors Portions of tumors removed at the time of sacrifice were processed separately for DNA and RNA isolation as described in the detailed examples. Controls consisted of human bladder cancer (+) and rUGM (-) cell DNA. Various concentrations of DNA. were loaded and probed for repetitive Alu
  • RNA 20 ⁇ g was loaded and probed with a complementary DNA probe for PSA.
  • PSA complementary DNA probe for PSA.
  • (a) Southern dot blot of LNCaP/rUGM tumors demonstrating variably positive Alu in 6 or 7 tumors from male hosts (lanes 1-7) and 0 or 3 tumors from female hosts (lanes 1- 3).
  • LNCaP/MS tumors (b, bottom) demonstrates that all are strongly positive for PSA.
  • FIG. 3 Differences in serum PSA levels (ng/ml) in animals with various LNCaP chimeric tumors paralleled their differences in histomorphology.
  • MS bone fibroblasts were the most reliable inducer of LNCaP carcinoma formation and resulted in the highest PSA levels, with a median of 68.1 ng/ml.
  • FIG. 4 LNCaP cells are androgen sensitive in vi tro.
  • (a) LNCaP cells were stimulated in vi tro by androgens with a 182 and 142% increase in cell growth with 1.0 nM testosterone (T) and 0.1 nM
  • DHT dihydrotestosterone
  • FIG. 5 Effect of defined growth factors on LNCaP cell growth in vi tro .
  • the growth of LNCaP cells are stimulated in vi tro by bFGF in a concentration-dependent manner (a), producing a 180% increase in cell number over 9 days.
  • Both TGFo. and EGF had no significant effect on LNCaP growth in vi tro using concentrations from 0.1 to 50 ng/ml.
  • a 50% reduction in LNCaP cell growth was produced by 0.1 ng/ml TGF ⁇ (b). Points, averages of 6 replicated determinations from 3 separate studies; bars, SE ranging from 3-9%.
  • FIG. 6 Stimulation of LNCaP cell growth in vi tro by prostate- and bone-derived conditioned media.
  • LNCaP cells are stimulated up to 210% in a concentration- dependent manner from 0.1- to 1.0-fold by rUGM
  • conditioned media and are also stimulated by NbF-1 and MS conditioned media, but not by 3T3, CCD16, or NRK conditioned media.
  • a bidirectional paracrine- mediated stimulatory pathway exists between LNCaP cells and rUGM and MS fibroblasts. rUGM cells are stimulated up to 400% in a concentration-dependent manner from 0.1- to 2-fold by LNCaP conditioned media and also less so by NbF-1, MS, 3T3, and CCD16 conditioned media.
  • FIG. 7 rUGM and MS conditioned media stimulate LNCaP tumor growth in vivo .
  • Gelfoam a solid form of slowly absorbable gelatin, was used as a reservoir for delivery of biologically active factors to determine whether LNCaP tumor growth could be induced by fibroblast conditioned media in vivo in the absence of stromal cells.
  • Gelfoam was adsorbed with 100 ⁇ g/ml collagen IV for 12 hours followed by EGF, bFGF, or stromal
  • LNCaP cells 2 x 10 6 , were inoculated s.c. with treated Gelfoam, except at some control sites, where ECGF-treated Gelfoam was injected alone to detect angiogenesis. Angiogenesis was visible after 3 weeks when Gelfoam plus collagen IV adsorbed with ECGF was injected (b).
  • ECGF-treated Gelfoam was injected alone to detect angiogenesis.
  • Angiogenesis was visible after 3 weeks when Gelfoam plus collagen IV adsorbed with ECGF was injected (b).
  • 5 of 10 (50%) tumors formed by 10 weeks (mean tumor volume, 278 mm 3 ).
  • MS conditioned media-treated Gelfoam 3 tumors formed at 8 sites (38%).
  • bFGF was also tested because of its in vi tro mitogenic activity and induced tumor formation at 3 of 5 sites (60%).
  • FIG. 8 Heparin affinity column chromatography of human bone stromal conditioned media. 560 mg total MS conditioned media protein was loaded onto the column. The column was washed with 10 mM Tris-HCl, ImM PMSF, pH 7.4, before eluting with a continuous salt gradient of
  • FIG. 9 SDS-PAGE analysis of the active fractions (1 M NaCl-eluted fractions) from heparin sepharose chromatography. Track 1, high-molecular weight markers; track 2, control media; track 3, active fractions.
  • FIG. 10 Effect of various growth factors
  • FIG. 11 Identification of a human growth factor polypeptide with an apparent molecular weight on SDS/PAGE of approximately 157 kD. This polypeptide, present within human bone marrow, is identified by its reactivity with the mAb MS 329 in Western blot analyses.
  • BM bone sample
  • TM control media sample.
  • FIG. 12 Schematic Representation of the BPGF-1 Sequence and Limited Restriction Enzyme Map.
  • the solid box represents the ORF starting from the ATG 694 and ending to TGA 2314.
  • FIG. 13A Stimulation of Rat Prostate NbE-1 Cell Growth by Conditioned Medium from BPGF-1 Transfected COS-1 Cells.
  • NbE-1 cells were plated at approximately 2000 cells per well in 96-well plate.
  • Medium conditioned by COS-1 cells transfected with wither BPGF-1 or vector alone (open square) was added to the cells.
  • Cells were assayed for proliferation after 3, 5, 7 days of growth by crystal violet assay. The data plotted represent the mean of quadruplicate wells +/- SD.
  • FIG. 13B Supernatants conditioned by BPGF-1
  • FIG. 14 Northern Blot Analyses of BPGF-1
  • RNA (10 ⁇ g) isolated from MS cells was subjected to Northern blot. The filter was hybridized with the BPGF-1 cDNA. Position of 28 S and 18 S RNA are shown at the right.
  • FIG. 15 Southern Blot Analysis of DNA from Human Prostate PC-3 Cells Using the Entire BPGF-1 As a Probe. The probe was radiolabeled using random priming
  • hybridization and washing of the blot was done at 65°C, and the final washing stringency was 0.1 X SSC, 0.1% SDS.
  • FIG. 16 The Effect of BPGF-1 Gene Expression in LNCaP Cells Treated with Varieties of Growth Factors. Confluent LNCaP cells were kept in serum-free T medium. After 24 h, fresh medium was added and some cultures were supplemented with growth factors, as indicated above.
  • RNA samples were subjected to
  • FIG. 17 Immunoblot Analysis of Recombinant BPGF-1 Expression in E.coli.
  • the entire cDNA of BPGF-1 was ligated to pTricHis B, and expressed in Bacteria. Cell lysis was subjected to PAGE-SDS and blot to the
  • FIG. 18 Identification of BPGF-1 Protein Using Anti-Peptide Antibodies. Ten ⁇ g of MS1 fraction was loaded in the gel. The molecular weight marker was shown on the right.
  • FIG. 19 Morphological Changes Induced by BPGF-1 cDNA Expressed in PC-3 Cells. Micrographs of the PC-3 parental in high intensity (a), and in low intensity (c). PC-3 cell transfected with BPGF-1 cDNA in high intensity (b), and in low intensity (d). Cells were cultured in T-medium with 5% FCS, and photographed with inverted microscope.
  • nontumorigenic epithelial and organ-specific mesenchymal cells results in solid tumor formation in vivo (Camps et al., 1990, Gleave et al., 1991, Chung et al., 1989). Soluble factors secreted by the prostate and bone stromal cells enhanced
  • BPGF-1 cDNA clones Isolation of the BPGF-1 cDNA clones
  • the inventors screened a cDNA expression library with a polyclonal antibody specifically against MS-1 fraction and isolated the clones that encodes an BPGF-1 protein.
  • the full-length cDNA sequence of clone BPGF-1 (3171 bp) corresponds well with the observed size of the BPGF-1 transcript of about 3.3 kb, suggesting that virtually the complete mRNA sequence has been isolated in cDNA form.
  • Northern blotting using BPGF-1 cDNA as a probe detected two mRNA transcripts with approximately equal intensity in human bone and prostate cells. There is one single BPGF-1 gene as evidence by Southern blot analysis.
  • BPGF-1 tissue-specific factor-1 that is tissue specific and expressed predominantly in bone, seminal vesicles, and prostate, with substantially higher levels in bone than in prostate (at least 50 times higher in bone than in prostate), although it is also present in minute quantities in other tissues. It is likely that the expression of BPGF-1 in qualitatively and quantitatively different in various tissues , along with the stimulation of prostatic
  • carcinoma cell growth by BPGF-1 may contribute in part to the preference of prostatic carcinoma metastases in the bone.
  • TGF- ⁇ (Wilding et al., 1989 b), FGF (Ikeda et al., 1987, Danielpour et al., 1989, Nakamoto et al., 1992), PDGF (Sitaras et al., 1988), IGF (Cohen et al., 1991), HGF/SF (Nakamura et al., 1986, Nakamura et al., 1989, Weidner et al., 1991, Montesano et al., 1991), KGF (Rubin et al., 1992), and NGF (Djakiew et al., 1991).
  • the inventors show that expression of the
  • BPGF-1 full-length of the BPGF-1 cDNA stimulates the growth of human and rat prostatic carcinoma cells. It was also observed that expression of the full-length of the BPGF-1 cDNA in human prostate PC-3 cells line results in the change of the cell morphology. The morphology of the BP cell line (transfected with BPGF-1) is different from the parental PC-3 cell line (FIG. 19). BP cells were more elongated, and piled up when they reached confluence. These results indicate that BPGF-1 is capable of functioning as a proliferation factor on human and rat prostate cells.
  • the present disclosure presents the results from studies directed to identification and characterization of growth factors which promote prostate cell growth. Also examined is the question of whether
  • LNCaP lymph node derived prostate cancer cell line
  • LNCaP cells have previously been shown to be nontumorigenic when injected subcutaneously in athymic mice with less than 4 x 10 6 cells/inoculum (Horoszewicz et al., 1983). This observation was confirmed by the present inventors, and further extended by their
  • LNCaP cells are nontumorigenic even at higher doses.
  • the inductive capabilities of specific fibroblasts can be examined following their co-administration to mice along with LNCaP.
  • the LNCaP cell line is the only prostate cell line that produces prostate specific antigen (PSA) (Papsidero et al., 1981), a human tissue-specific tumor marker used clinically to monitor in vivo prostate cancer cell growth (Stamey et al, 1987; Ford et al., 1985).
  • PSA prostate specific antigen
  • LNCaP cells are androgen-responsive both in vivo (Sonnenschein et al., 1989) and in vi tro (Schuurmans et al., 1989) which provides scope for the sex-dependent differences in chimeric tumor growth to be assessed.
  • LNCaP can be consistently grown in vi tro (Isaacs, 1987).
  • the inventors have exploited these properties in the development of parallel in vi tro and in vivo cell-cell interaction assays. This allows, for the first time, the results from dual model systems using the same cell types and factors to be assessed. Moreover, results from such coordinated in vi tro and in vivo studies can be more confidently applied to the clinical situation.
  • the in vivo assay system disclosed herein is based upon the co-administration of LNCaP cells to athymic mice along with another cell type or composition. The effect of the cells or composition being analyzed can then be assessed by determining the degree of tumor growth in the co-inoculated animals and comparing it the control growth observed (if any) in animals given either LNCaP cells, or the test composition, alone.
  • compositions other than intact cells To analyze compositions other than intact cells, the inventors have developed a modified version of the assay. This is based upon the adsorption of concentrated
  • substance (s) onto a solid matrix and the coadministration of the matrix and LNCaP cells to an experimental animal where the adsorbed matrix acts as a reservoir for the in vivo delivery of the test
  • substance (s) It is contemplated that this method will be particularly useful for analyzing substances such as conditioned media from various cell types and known growth factors.
  • fibroblasts were found to be the most effective in stimulating LNCaP cell growth both in vivo and in vi tro.
  • the presence of bidirectional paracrine pathways between LNCaP and fibroblast cells is illustrated in vivo by the development of sarcomas with the co-inoculation of LNCaP cells and nontumorigenic rUGM and 3T3 fibroblasts.
  • LNCaP and rUGM conditioned media produce bidirectional increases in growth in a paracrine-, but not autocrine-, mediated fashion.
  • LNCaP cells participated in chimeric tumor formation preferentially in males, demonstrating initial in vivo androgen-sensitive growth. These results, along with their in vi tro androgen sensitivity, further support the view that the initial growth of LNCaP cells in vivo may be androgen-responsive (Sonnenschein et al., 1989).
  • the LNCaP androgenrefractory cell lines, C 4 and C 5 have been shown, for the first time, to be tumorigenic and to secrete high levels of PSA autonomously, i.e., in the absence of androgen. Both, of these characteristics are typically found in human prostate cancer as it undergoes transformation to enter the hormonally refractory state.
  • the inventors' finding that hormonally refractory prostate cancer cells secrete specific autocrine protein factor (s) that induce PSA gene expression by the prostate cells is important as, to date, there have been no reports
  • factor (s) produced by such refractory cells may impact on the development of new therapeutic approaches to address the problem of hormonally
  • the substantially purified fraction contained novel polypeptides with apparent molecular weights on SDS/PAGE of: 227, 223, 218, 157, 90, 80, 48, and 20kD. These polypeptides were found to be distinct from bFGF by a number of criteria including differential elution from heparin sepharose columns and distinct immunoreactivity. The presence of the novel 157 kD polypeptide within the active fractions was not initially detected, presumably as it was masked by an irrelevant and inactive polypeptide also present in the control media.
  • Osteoblasts are the principal source of synthesis and deposition of bone matrix and the site where bFGF is stored and mediates its mitogenic activity (Globus et al., 1989; Hauschka et al., 1986).
  • bFGF promotes LNCaP cell growth, and may also act in a paracrine fashion to stimulate metastatic cancer cell growth (Lu et al., 1989; Ensoli et al., 1989), but bFGF itself does not appear to be an active component of the growth factors disclosed herein.
  • bFGF-like protein may be responsible, in part, for the growth factor activity which stimulates prostate cell growth in vivo and in vi tro.
  • LNCaP cells passage 29, were obtained from Dr. Gary Miller (University of Colorado, Denver, CO) and grown in RPMI 1640 (Irvine Scientific, Santa Anna, CA) with 10% fetal bovine serum (FBS). Phenotypically, the cells resembled parental lines as evidenced by the results of karyotypic analysis and androgen receptor analysis (see below).
  • the six nontumorigenic mesenchymal cell lines analyzed in this study are as follows: a fetal urogenital sinus mesenchyme-derived cell line (rUGM) from 18-day old Noble rat fetuses, developed as described by Chung et al., 1984. rUGM cells were maintained in DMEM (Gibco).
  • NbF-1 A rat prostatic fibroblast line, NbF-1, was established from normal Noble rat ventral prostate gland as described previously (Chang & Chung, 1989). NbF-1 cells were maintained in DMEM and 5% CS and
  • nontumorigenic passages 18-22 were used.
  • NIH-3T3 cells ATCC #6587
  • NRK normal rat kidney
  • ATCC #6509 Normal rat kidney (NRK) fibroblasts (ATCC #6509) were grown in DMEM with 5% CS and passages 10-12 were used.
  • Conditioned media from LNCaP and all 6 fibroblast cell lines was collected and prepared as follows: Cells were cultured in 150 mm tissue culture dishes (Falcon, Becton Dickinson Laboratories, Lincoln Park, NJ) with T-medium, 2% TCM, a serum-free defined media supplement (Celox Co., Minnetonka, MN), and 1% FBS until 60-70% confluent, washed with PBS/EDTA and changed to serum-free T-medium containing 2% TCM only. After 48 hours, the conditioned media was removed, filtered through a 0.2 ⁇ m filter (Nalge Co., Rochester, NY), and 0.1 mM
  • phenylmethyl-sulfonylfloride (PMSF, Sigma) was added. Protein concentrations in the conditioned media were determined using a protein assay (Bio-Rad Laboratories, Richmond, CA) , and ranged from 70-100% of control
  • T-medium and 2% TCM 1.3 mg/ml
  • the conditioned media was dialyzed at 4°C against distilled water containing 0.1 mM PMSF using Spectra/Por 3 dialysis membranes (M r > 3500 dalton, PGC Scientifics, Gaithersburg, MD) for 96 hours, changing the water after 48 hours.
  • the samples were lyophilized to dryness and reconstituted in T-medium to ten times concentration (10x), filtered, and diluted to the desired working concentration (0.1 to 2x) with T-medium containing 2% TCM.
  • the cells were suspended in 0.1 ml of RPMI 1640 with 10% FBS prior to injection and inoculated via a 27 gauge needle. Tumors were measured twice weekly and their volumes were calculated by the formula
  • LNCaP cells were injected along with a Gelfoam preparation (Upjohn, Kalamazoo, MI), adsorbed with type IV collagen (Collaborative Research, Bedford, MA), endothelial cell derived growth factor (ECGF) (Collaborative Research), and ten times
  • rUGM or MS conditioned media This novel matrix system was developed through modification of a previously described procedure (Thompson et al., 1988) and serves as a reservoir for delivery of biologically active factors in vivo .
  • ECGF was chosen as a marker of physiologic response to determine whether it could retain its biologic activity during this procedure, and whether this angiogenesis alone would be sufficient to promote tumor formation.
  • rUGM and MS conditioned media were used because these cells could induce LNCaP growth in vivo.
  • Basic fibroblast growth factor (bFGF, Collaborative Research) was also used because of its mitogenic effect on LNCaP cells in vi tro (see below).
  • Gelfoam a solid gelatin sponge
  • 100 ug/ml collagen IV for 12 hours at 4°C
  • the Gelfoam was then minced using a polytron to allow subcutaneous inoculation via an 18 gauge needle.
  • 2 x 10 6 LNCaP cells were inoculated with Gelfoam and collagen IV, with or without ECGF. Tumor incidence and size was monitored as
  • specimens were fixed in 10% neutral buffered formalin and embedded in paraffin.
  • H&E hematoxylin and eosin
  • specimens were deparaffinized with xylene, rehydrated with 70% ethanol, and treated with 0.1% trypsin for 10 min at 37°C. Sections were then incubated with monoclonal antibodies prepared against cytokeratin, PSA, or prostatic acid phosphatase (PAP) (Biogenex, Dublin, CA) .
  • PAP prostatic acid phosphatase
  • An avidin-biotin complex method was used with all specimens using fast red TR or AEC as chromogens (Biogenex). Slides were counterstained with aqueous hematoxylin and mounted with glycerol for visual
  • Tissue DNA was isolated from tumors as described by Davis (1986). DNA concentration was determined with a spectrophotometer. DNA specimens were applied to
  • Total cellular RNA was prepared from frozen tissues by the 4 M guanidinium thiocyanate extraction method (Chomcjymski & Sacchi, 1987). Typical yields of total cellular RNA were about 300 ⁇ g/200 mg tissue as
  • Autoradiograms were prepared by exposing Kodak X-Omat AR film to the membrane at -80°C with intensifying screens.
  • fibroblast growth factor (bFGF), transforming growth factors alpha and beta (TGF ⁇ , TGF/S) and epidermal growth factor (EGF) (Collaborative Research) were also tested.
  • bFGF fibroblast growth factor
  • TGF ⁇ transforming growth factors alpha and beta
  • EGF epidermal growth factor
  • NbF-1 fibroblasts as these tumors formed only in male hosts (62% and 17%, respectively).
  • Mean tumor volume for LNCaP/MS and LNCaP/NbF1 tumors was 238 ⁇ 74 mm 3 and 72 ⁇ 52 mm 3 , respectively.
  • Lung CCD16 and NRK fibroblasts did not induce chimeric tumor growth in either sex.
  • the histomorphology and relative content of LNCaP cells in the various fibroblast-induced tumors differed markedly, as characterized below.
  • LNCaP/rUGM chimeric tumors was noted between males and females: in males, 51% of tumors (or 31% of inoculation sites) were carcinosarcomas, with a predominantly epithelioid component separated by strips of mesenchymal cells (FIG. 1a), while 89% (16/18) of the tumors in females were pure sarcomas (FIG. 1b). MS bone
  • fibroblasts were found to be the most potent inducer of LNCaP tumor formation. All tumors were carcinomas composed of sheets of poorly differentiated epithelial cells with minimal mesenchymal cells and formed at 62% of inoculated sites in male hosts (FIG. 1c); no tumors formed in female hosts. NbF-1 cells were also capable of inducing LNCaP tumor growth in male hosts, but not as well as the MS or rUGM cells; three carcinomas formed from 18 inoculations (17%). LNCaP/3T3 tumors, however, were all sarcomas with no epithelial component. No tumors formed with co-inoculation of LNCaP with human lung CCD16 or NRK fibroblasts. The prostatic origin of the epithelial cells participating in the MS-, rUGM-, and NbF-induced tumor formation in male hosts was confirmed with
  • FIG. 2 The LNCaP/rUGM tumors in male hosts contained a predominantly human component as manifested by the presence of Alu-sequences in 6 (2 weakly) of 7 tumors examined, compared to none in female tumors (FIG. 2a). PSA expression was more variable in these tumors and did not correlate consistently with the histomorphologic and Southern dot-blot analysis, likely because of different sampling from a heterogenous carcinosarcoma. All
  • LNCaP/MS tumors were strongly positive for PSA expression and human-specific Alu sequences on Northern and Southern analysis, respectively (FIG. 2b). None of the LNCaP/3T3 tumors that formed had any human prostate component
  • FIG. 2b Serum PSA Levels .
  • serum PSA values in males with LNCaP/rUGM tumors ranged from 0.4 to 348 ng/ml with a median of 16.1 ng/ml; 11 of 12 males had detectable levels and 3 had levels > 100 ng/ml.
  • LNCaP cells To identify possible mitogens involved in LNCaP cell growth, the dose-response relationship between LNCaP cells and bFGF, EGF, TGF ⁇ , and TGF ⁇ was investigated.
  • FIG. 7b (FIG. 7b) illustrating that certain growth factors could maintain their biological activity when injected
  • LNCaP tumors formed at 60%, 50% and 38% of inoculated sites, respectively. Tumor latency, growth rate and size was similar, and did not differ from that of chimeric tumors induced by co-injecting LNCaP cells with rUGM or MS fibroblasts. Animals bearing LNCaP tumors had an elevated serum PSA (median 73 ng/ml) and the tumors were histologically carcinomas staining positive for PSA (FIG. 7c). The human prostatic origin of these tumors was confirmed with Southern dot-blot analysis for human Alu sequences and Northern analysis for PSA mRNA expression (FIG. 7d). EXAMPLE 2
  • Example 7 As shown in Example 1, section 7, accelerated LNCaP tumor growth still occurred in vivo when human bone stromal cells themselves were substituted by their conditioned media. Also, purified bFGF induced LNCaP tumor growth both in vi tro and in vivo.
  • the MS conditioned media was dialyzed prior to further purification and analysis. Firstly, a sample of conditioned media was subjected to affinity
  • the properties of the partially purified heparin sepharose-eluted growth factor preparation were then further investigated.
  • the mitogenic and tumor- forming activities were found to be trypsin and heat sensitive, but to be partly resistant to acid and reducing agent treatment (Table 5).
  • HGF HGF
  • EGF nerve growth factor
  • the preferred approach recommended by the inventors involves the initial preparation of antibodies against the growth factor polypeptides.
  • mAbs monoclonal antibodies
  • the inventors propose the partially-purified growth factor preparation as a starting material for this procedure for the following reasons. Firstly, the action of the conditioned media cannot be neutralized using a single commercially available antibody directed against any of the known growth factors. Secondly, the total number of bone stromal cell-associated proteins in the partially purified fractions is relatively small, and it will be possible to develop specific mAbs against all of these proteins. Most importantly, fresh bone marrow
  • supernatant fractions contain proteins similar to those of the conditioned media. It is proposed that such mAbs will have utility in a variety of different embodiments. They will be powerful tools for the further purification of the growth factors. From the data presented above, it seems likely that the interaction between the growth factors, the prostate cancer cells, and certain ECM proteins may be required for prostate cancer progression and acquired behaviors such as metastatic and androgen-independent properties. mAbs against such polypeptides are therefore potentially attractive diagnostic, prognostic, imaging, and
  • mAbs may be obtained which bind
  • mAbs specifically to the cancer cells, or to cancer-specific antigens in circulation, such mAbs would also be a powerful diagnostic agent.
  • the conditioned media of the MS culture will be fractionated to prepare the partially purified growth factors against which mAbs are to be generated. An aliquot of this material will be loaded onto a heparin sepharose affinity column previously equilibrated an appropriate buffer, such as Tris HCl, (pH 7.4). Proteins will be eluted from the column by a continuously
  • the biologically active fractions will be pooled and concentrated by a suitable method, such as, for example, dialysis and lyophilization, or desalting using dry sephadex gels or sephadex gel exclusion column chromatography followed by lyophilization.
  • Balb/c mice of approximately 3 months in age will be immunized intraperitoneally (day 0) with 10 to 50 ⁇ g/mouse of the partially purified growth factors homogenized with Ribi mouse adjuvant system
  • mice will then be given two consecutive weekly intraperitoneal injections of the antigens mixed with Ribi mouse adjuvant (day 7 and 14). Approximately one month after the third injection, booster inoculation of antigens alone will be given.
  • ELISA enzyme-linked immunosorbent assay
  • the mouse myeloma cell line proposed to be of use for hybridization is the 8-azaguanine-resistant mouse murine myeloma SP2/0 non-producer cell line.
  • the SP2/0 cell line has been selected for 8-azaguanine resistance and does not survive in medium containing hypoxanthine, aminoprotein, and thymidine (HAT).
  • HAT hypoxanthine, aminoprotein, and thymidine
  • the cells will be fused as described in (Chan et al., 1987).
  • Immune splenocytes (10 8 cells) obtained from two hyperimmunized mice and 8-azaguanine-resistant SP2/0 mouse myeloma cells (10 7 cells) will be fused using 37% (v/v) polyethylene glycol 1500 (M.W. 500-600 M.A.
  • Fused cells will be maintained for two days in growth medium that has been conditioned by SP2/0 cells, and then plated in five or six 96 -well microtiter plates in growth medium containing HAT (selection medium) and screened for antibody production at the end of 2 weeks by indirect ELISA.
  • HAT selection medium
  • purified growth factors, or partially purified growth-promoting factor (s) obtained from the conditioned media, or bone marrow supernatant fractions may be used as target antigens, and media plus NaCl may be used as a control.
  • the target antigens 50 ng/50 ⁇ l/well
  • the culture medium from the wells propagating the splenocyte-myeloma (hybridoma) cells growing in the selection medium will be assayed for secreted antibodies that react with the immobilized antigens (either bone marrow supernatant fractions, or bone stromal cell- conditioned media, or purified growth factors may be used).
  • the isotypes of the immunoglobulin (s) produced by cloned hybridoma cell clones may also be determined by ELISA, employing a commercial isotyping kit.
  • the specificity of the mAbs may be determined by their reactivity with various antigens, as examined by ELISA and confirmed by western blot analysis. After the mAbs are characterized, they may be produced in the form of mouse ascites fluid, purified and used to antagonize the soft agar colony forming
  • MS 329 A mAb, termed MS 329, has been produced which has reactivity with a 157 kD growth factor polypeptide
  • FIG. 11 Based on previous experience (Chi et al . , 1987;
  • the inventors further propose that it will be possible to identify specific mAbs that may have diagnostic and prognostic values in predicting human prostate cancer metastasis to the bone, imaging the prostatic metastasis, and
  • the criteria to be used in assaying for such mAbs are proposed to include tests for, e.g., specific reaction with a defined protein band of conditioned media in immunoblots or in
  • the inventors contemplate their use in diagnosis, prognosis, imaging, and therapy. This approach is advantageous because, unlike any anti-PSA antibodies, the mAbs against cancer-specific antigens may not be trapped in the blood compartment and they would therefore more efficiently block prostate cancer and bone cellular interactions. In addition, the inventors propose that the levels of these growth factors may correlate positively with prostate cancer progression. To investigate this, it is proposed that bone marrow aspirates will be obtained initially from late stages of the untreated prostate cancer patients (Stage D1, D2) and prostate cancer patients treated with hormonal therapy, or failed
  • concentration of growth factors in such samples may be analyzed by ELISA, or radioimmunoassay (RIA) and compared to the number of prostate cancer cells present in bone marrow.
  • RIA radioimmunoassay
  • the sensitivity of this assay is estimated to be in the ng range. This sensitivity of assay could be used effectively to diagnose prostate cancer, or to predict the progression of prostate cancer and its response to various therapies in very small volumes of bone marrow aspirates. Similarly, the assay will be refined as a diagnostic tool for the early detection of the onset of prostate cancer.
  • the mAb(s) will have utility in radio-imaging protocols.
  • mAb(s) labeled with indium 111 (100) can be administered to mice previously inoculated with LNCaP and bone
  • mice which bear experimental LNCaP tumors and the outcome monitored.
  • the specific mAbs could also be employed in the rapid purification of the growth factor polypeptides following the creation of a mAb-affinity column. This could be achieved by conjugating a specific mAb to cyanogen bromide (CNBr)-activated sepharose CL4B
  • the antibodies would first be attached to the CNBr- sepharose, and the antisera-bound matrix then poured into a column and washed with a suitable wash buffer. An aqueous mixture including the growth factor polypeptides could then passed over the column under conditions to allow for immunocomplex formation between components in the mixture and the sepharose-bound antibodies. The column would then be washed extensively to remove non- specifically bound material and the specifically-bound antigens eluted from the column in a substantially purified state. Such an affinity column could also be used to isolate and characterize growth-promoting component (s) from human bone marrow aspirates obtained from prostate cancer patients.
  • s growth-promoting component
  • bone marrow aspirates (-10 ml per patient, at 20 to 30 mg protein/ml) could be obtained from prostate cancer patients, from female breast cancer patients (with or without bony metastasis), and from healthy normal male and female donors and analyzed. From such investigations, the sex-dependent differences and disease specificity of the growth factors that appear to promote human prostate tumor growth could be investigated.
  • MS cells were maintained in T medium ( 80% DMEM, 20% F12K, 3 g/ml NaHCO 3 , 100 units/ml penicillin G, 100 ⁇ g/ml streptomycin, 5 ⁇ g/ml insulin, 13.6 pg/ml triiodothyronine, 5 ⁇ g/ml transferrin, 0.25 ⁇ g/ml biotin, and 25 ⁇ g/ml adenine) with 5% FBS; passages 29-33 were used.
  • the rat prostate epithelial cell line, NbE-1 was established from a normal Noble rat ventral prostate gland using procedures previously described (Chung et al., 1989). PC-3 cells, human prostate
  • adenocarcinoma derived from bone marrow metastases.
  • RNAs were extracted from MS cells using the RNAzol B method, a single-step purification protocol as described previously (Chomcyzynski and Sacchi 1987).
  • the Poly (A) mRNA was purified by two cycles of oligo (dT) - cellulose column chromatography according to the manufacture's procedures ( Pharmacia LKB
  • MS poly (A) mRNA was used toconstruct MS cDNA expression library in the ⁇ ZAP II vector ( Stratagene). Double-strands cDNA primed with a oligo (dT) 12-18 was synthesized as described by the manufacture's protocols ( Pharmacia LKB Biotechnology). A EcoR1 adaptor with internal Not1 site was added to the cDNA, and ligated to the ⁇ ZAPII/EcoR1 vector. The final expression library contained a total of 2 x 10 6 clones, with more than 95% of the clones containing the cDNA inserts.
  • Dialyzed bone fibroblast conditioned medium was applied to a heparin sepharose affinity column
  • MS cDNA expression library was screened with the polyclonal antibody against MS1 fraction. Screening of cDNA expression library was performed as described by the manufacture's protocol (Stratagene). The cDNA clones were sequenced by the standard dideoxy chain termination method using sequenase ( United States Biomedical). Two strands of the templates were sequenced using T7, T3, and internal primers generated from the sequence. Overlapping sequences were assembled into a contiguous sequence using the computer program MacVector ® . Northern Blot analyses
  • Total RNA was prepared from variety of human tissues and cells as described above. 20 ⁇ g of total RNA was subjected to Northern Blot analysis by electrophoresis on 0.9% agarose formaldehyde and then transferred onto a Zetaprobe membrane. Membranes were baked at 80 °C for 2 hours, prehybridized in a hybridization buffer
  • membranes were blocked with 5% powdered milk in TBS, 0.1% Tween 20 for 3 hours. Membranes then incubated with primary antibodies diluted in the blocking solution with 3% powder milk for 1 hour. After washing with TBS, 0.1% Tween 20, membranes were incubated in the blocking solution with 3% powdered milk for 1 hour with proper secondary antibodies (Horseradish peroxidase conjugated streptavidin). The protein was detected with ECL Western blotting reagents and exposed to Hyperfilm ECL (Amersham Life Science).
  • CGTWKPPSTSSSPTSP, GPEASRPPKLHPG corresponding to the BPGF-1 amino acid sequences were coupled to keyhole limpet hemocyanin and used to immunize mice. Antisera from these mice were used for Western blot analysis.
  • the cells were washed twice with PBS, and changed to serum-free T media containing 1% TCM (a serum-free defined media
  • the conditioned media was collected after 48 hours, and filtered through a 0.2 ⁇ M filter and then dialyzed with a 10,000 molecular weight cut-off membrane (Spectrum Medical Industries, Inc., Los Angeles, CA) for 72 hours at 4°C against distilled water containing 0.01 ⁇ M phenylmethylsulfonyl fluoride, water was changed every 24 hours. Samples were lyophilized and reconstituted to a 10-fold concentration with T medium, filtered, and diluted to the desired working concentration with T media containing 1% TCM.
  • a 10,000 molecular weight cut-off membrane Spectrum Medical Industries, Inc., Los Angeles, CA
  • PC-3 and NbE-1 cells were seeded in 96-well plate with T medium containing 1% TCM and 2% FBS. These cells were then washed with PBS twice and the desired condition media were added. The media was changed every other day. Cell number will be determined by crystal violet assay (Gillies, et al., 1987). The cells were grown in 96-well plates for another 3, 5, 7 days prior to fixation in 1% glutaraldehyde. The fixed Cells will be stained using 0.5% (w/v) crystal violet. Sorenson's solution was added to hydrolyze the cells and release trapped dye. Quantitation was performed using a Titertek Multiscan 96-well plate reader at 560 nm.
  • NbE-1 Cells were trypsinized and washed in PBS, and plated at 2000 cells/well in 12-well plates in 0.4% agar in the conditioned medium, over a 1 ml layer of T-medium with 1% agar. The colonies were scored after grown 3 to 4 weeks. Regulation of BPGF Expression in LNCaP cells by Growth Factors
  • LNCaP cells were cultured in 65-mm tissue culture dishes with T medium containing 2% TCM and 2% FBS until 80% confluence was reached. These cells were washed with PBS twice and continuance cultured in serum-free T medium with 2% TCM. After 48 hours, fresh medium was added and some culture were supplement with variety of growth factors. The total cellular RNA was prepared 48 hours after treatment and subjected to Northern blot analysis.
  • the recombinant DNA was then transformed into E.coli strain TOP 10 (Invitrogen).
  • the fused protein was induced by IPTG (1 mM) and separated in SDS-PAGE and visualized by Western blot analysis using polyclonal antibody against MS-1 fraction.
  • Bone stromal cell conditioned medium contains factors that were able to stimulate human prostate tumor growth both in vi tro and in vivo (Chung, et al., 1992), and that certain heparin-bound growth factors were implicated in both benign and malignant growth of human prostate cancer cells ( Gleave et al., 1991, Chung et al., 1992).
  • Dialyzed conditioned medium from a human bone fibroblasts was applied to a heparin sepharose affinity column. Bound proteins were eluted with a continuous linear sodium chloride gradient from 0 to 3 M.
  • FIG. 8 The elution profile and distribution of mitogenic activity are shown in FIG. 8. Prostate tumor-inducing activity was eluted predominantly in the 1.0 M NaCl fraction of the bone fibroblast cell conditioned medium. Specificity of tumor-inducing activity was demonstrated in studies where similar fractions eluted at 2.0 M NaCl or identical fractions eluted from NIH 3T3 cell conditioned medium, or control serum-free TCM medium failed to exert prostate tumor-inducing activity as analyzed by both in vivo tumor growth and in vi tro soft agar colony formation (table 6).
  • a polyclonal antibody specifically against MS-1 proteins was raised. This polyclonal antibody was used as a reagent to clone a bone and prostate derived growth factor by screening a cDNA expression library from a human bone stromal cell line, MS. Screening of cDNA Library
  • a cDNA expression library was constructed using mRNA isolated from a human bone stromal cell line, MS. Total RNA was isolated from MS cells. The mRNA was isolated using oligo (dT)-cellulose chromatography and 5 ⁇ g of mRNA was used for the reverse transcription and the synthesis of cDNA using a cDNA synthesis system. EcoRI adapters were ligated to cDNAs, and a library was constructed in ⁇ ZAPII using a Gigapack Gold packaging kit (Stratagene, CA). Approximately one million clones from the library were screened with the polyclonal antibody against the MS-1 fraction. Ten positive clones were identified that remained positive upon secondary and tertiary screening.
  • the range of DNA inserts of the clones is 1.5 to 4.0 kb. Partial DNA sequencing was performed in all isolated clones and it was found that three of the cDNA clones shared a significant degree of homology. The clone (BPGF-1) containing the largest insert from the three highly related clones was about 3.2 kb, and this clone was chosen for further analysis.
  • the BPGF-1 cDNA comprised 3171 nucleotides ( GenBank accession number will be obtained upon submission for publication) with a single, large open reading frame of 1620 nucleotides (SEQ ID NO:1).
  • the BPGF-1 gene map is presented in FIG. 12.
  • the predicted BPGF-1 protein is 59-kD composed of 540 amino acids before post-translational modification.
  • the BPGF-1 contains two potential N-linked glycosylation sites. A pI of 9 for the mature peptide is predicted from the cDNA sequence, ignoring any possible secondary ionic effects, such as contributions by the carbohydrate component.
  • the 3'UTR extended for an additional 858 bases, terminating with a poly (A) tail.
  • a conventional polyadenylation consensus sequence (AATAAA) was found 16 bases upstream of the poly (A) tail.
  • the BPGF-1 sequences were found to be unique in a search of the nucleic acid and protein databases (GenBank), and they were not closely related to any known sequences.
  • BPGF-1 was not expressed (Table 7).
  • BPGF-1 gene expression could be modulated by growth factors.
  • Northern blot analysis was performed and found that PDGF, EGF, HGF, KGF, and TGF- ⁇ could increase BPGF-1 gene expression in human prostate cancer cell line (LNCaP).
  • DHT a classical prostate mitogen, was failed to induce BPGF-1 gene expression (FIG. 16).
  • the inventors have chemically synthesized 3 peptides that represent the internal amino acid sequences of the cloned BPGF-1 cDNA. It has been shown that one of such polyclonal antibody obtained from the immunized mice recognized a protein band with an apparent molecular weight of 70 KDa (FIG. 18). This protein could represent the product of BPGF-1.
  • BPGF-1 has any biological activity in stimulating rat and human prostate cell growth
  • a mammalian cell expression vector encoding an entire open reading frame of BPGF-1 was constructed and expressed in COS-1 cells.
  • transfected COS-1 cells was collected and the activity was measured by whether the conditioned medium could support the growth of rat and human prostatic carcinoma cells. As shown in FIG. 13a and FIG. 13b, the
  • conditioned medium from transfected COS-1 cells contains potent stimulator for PC-3 and NbE-1 cell growth, while, transfection of COS-1 cells with vector alone yielded conditioned medium incapable of supporting PC-3 and NbE-1 cell growth. Moreover, it was observed that transfecting the expression vector of BPGF-1 to PC-3 cells resulted in an enhanced rate of cell growth and altered cell morphology, suggesting that BPGF-1 may serve both as a mitogen and a morphogen.
  • compositions and methods of this invention have been described in terms of preferred embodiments, it will be apparent to those of skill in the art that variations may be applied to the composition, methods and in the steps or in the sequence of steps of the method described herein without departing from the concept, spirit and scope of the invention. More specifically, it will be apparent that certain agents which are both chemically and physiologically related may be substituted for the agents described herein while the same or similar results would be achieved. All such similar substitutes and modifications apparent to those skilled in the art are deemed to be within the spirit, scope and concept of the invention as defined by the appended claims.
  • Isolation and characterization of insulin-like growth factor I from cultures of fetal rat calvariae.
  • MAb human plasma-associated hepatitis
  • non-tumorigenic epithelial cells results in the
  • Fibroblast-mediated human epithelial tumor growth and hormonal responsiveness in vivo In Molecular and cellular biology of prostate cancer, Karr, J.P., Coffey, D.S., Smith, R.G., Tindall, A.J., Ed. (Plenum Press, New York), pp. 91-102.
  • IGFs Insulin-like growth factors
  • TGF- ⁇ 1 and TGF- ⁇ 2 transforming growth factor- ⁇ secreted by cells in culture. J. Cell. Physiol. 138, 79-86.
  • Estrogen-induced factors of breast cancer cells partially replace estrogen to promote tumor growth. Science.
  • AIDS-Kaposi's sarcoma-derived cells express cytokines with autocrine and paracrine growth effects. Science 243:223-226, 1989.
  • Human transforming growth factor type b 2 production by a prostatic adenocarcinoma cell line, purification, and initial characterization. Biochemistry 26, 2406-2410. Isaacs, J.T. Development and characteristics of
  • LAK lymphokine activated killer
  • Collagen and collagen-derived fragments are chemotactic for tumor cells.
  • Expression of basic fibroblast growth factors mRNA in benign prostatic hyperplasia and prostatic carcinoma The Prostate. 13:241-247, 1988.
  • Fibroblast-dependent tumorigenicity of cells in nude mice Implication for implantation of metastases.
  • PDGF platelet-derived growth factor
  • Prostatic growth factor Purification and structural relationship to basic fibroblast growth factor.

Abstract

The role of tumor cell-host stromal interaction and stromal-specific growth factors in prostate cancer growth, progression and metastasis to the axial skeleton were investigated. A bone and prostate-derived growth factor (BPGF-1) was identified and cloned from an expression cDNA library prepared from human bone stromal cells. The cloned BPGF-1 cDNA comprised 3171 nucleotides with a single open reading frame of 1620 nucleotides. The BPGF-1 encodes two transcripts (3.3 and 2.5 kb) with approximately equal intensity. Polyclonal antibodies generated from the synthetic peptides that correspond to the nucleotide sequences of the cloned BPGF-1 cDNA reacted with a single putative BPGF-1 protein with an apparent molecular weight of 70 kDa. Southern blot analysis of human genomic DNA revealed that there is a single copy of BPGF-1 gene of 15 kb in size within BamHI sites. The cDNA for BPGF-1 encodes a protein that stimulates the proliferation of prostatic epithelial cells. The BPGF-1 gene is expressed predominantly in bone, prostate and seminal vesicles, with substantially higher expression in the bone than that of the prostate and seminal vesicles.

Description

DESCRIPTION
METHODS AND COMPOSITIONS FOR THE EXPRESSION OF A BONE AND PROSTATE DERIVED GROWTH FACTOR
BACKGROUND OF THE INVENTION
1. Field of the Invention The present invention relates generally to the field of cancer and also to polypeptides with growth-promoting activities. The invention is particularly directed to the identification of a growth factor, primarily from bone and prostate tissues, that has the capability to stimulate the growth of prostate cells and which promotes the metastasis of prostate cancer to bone tissues. The invention is further directed to novel in vivo and in vi tro assay methods, both to detect and quantitate such growth factor activity, and to screen for potential anti- cancer therapeutic substances. The preparation and use of monoclonal antibodies against such growth factors is also disclosed. 2. Description of the Related Art
Cellular interactions between mesenchymal and epithelial cells are believed to be an integral part of embryonic development (Kratochwil, 1972) which continues through adulthood by maintaining differentiated organ growth and function (Frank et al., 1970). These
interactions have also been proposed to be involved in the regulation of hormonal responsiveness (Cunha & Chung, 1981) and may play an important inductive and/or
permissive role in the pathogenesis of tumor growth
(Pitot et al., 1985; DeCosse et al., 1973; Hodges et al., 1977) and metastases (Chackel-Roy et al., 1989; Horak et al., 1985). The growth of a number of epithelial malignancies are influenced by their surrounding stroma, including the urinary bladder (Camps et al., 1990; Hodges et al., 1977), prostate (Camps et al., 1990; Kabalin et al., 1989), colon (Picard et al., 1986), and breast (Miller et al., 1989).
The increased incidence of prostate cancer during the last decade has established prostate cancer as both the most prevalent cancer, and the second leading cause of cancer deaths, in men (Carter & Coffey, 1990). Most patients dying of prostate cancer experience painful and sometimes crippling osseous metastases with up to 84% having bony metastases at autopsy (Franks, 1956).
Prostate cancer is known to selectively spread to the cancellous bones of the axial skeleton, where it is the only malignancy to consistently produce osteoblastic lesions (Cook & Watson, 1968). Metastatic growth of prostate cancer in bone marrow is rapid and virulent, in contrast, growth of primary prostate cancer is generally slower, suggesting that interaction between prostate and bone cells may lead to enhance prostate cancer cell seeding and rapid growth (Rossi et al., 1992, Chung, et al., 1992 ). The treatment strategies available for patients with metastatic prostate cancer have, in the past, focused primarily on androgen deprivation and/or radiation therapy. Such therapeutic modalities have palliative value, but have not resulted in cure or significant increases in patient survival rate. Recently, suramin, a drug known to disrupt the interaction of growth factors and their receptors, was shown to inhibit prostate tumor cell growth both in vitro and in vivo (LaRocca et al., 1990). However, the extreme toxicity of suramin in vivo prevents its clinical use in human treatment. The "seed and soil" hypothesis initially described in 1889 (Paget, 1989), proposes that tumor cells may selectively grow in certain organs due to their
particular properties. More recently, some such
properties have been proposed to be relevant to prostate cancer development, including, enhanced adhesion
(Nicolson & Winkelhake, 1975; Sherman et al., 1980), chemotaxis (Varani, 1982; Hujanen & Terranova, 1985), or preferential growth at certain sites (Manishen et al., 1985; Hart, 1985).
Several factors have been hypothesized to be responsible for the metastasis of prostate cancer to bone tissues. For example, it has been proposed that prostate cancer cells selectively seed the lumbar spine and pelvis via a paravertebral venous plexus through which
retrograde flow from the prostate to the spine may occur at times of increased intraabdominal pressure (Batson, 1940; Shevrin et al., 1988). However, this theory falls short as most tumor cells in the venous circulation also pass through the lungs (Nicolson, 1979) and yet the incidence of clinically apparent lung metastases in patients dying of prostate cancer is low (Elkin &
Mueller, 1979; Johnson, 1982). Furthermore, kinetic distribution studies using radiolabeled tumor cells have not shown a correlation between organ seeding and
subsequent metastatic formation (Fidler & Nicolson, 1976; Potter et al., 1983), suggesting that factors other than the simple mechanical arrest of tumor cells are
responsible for the development of prostate cancer bony metastasis.
Recent work has provided some evidence that prostate cancer cell growth may be under autocrine influences involving androgen-mediated regulation of TGF-α, EGF receptor, or bFGF (Wilding et al., 1989; Nonomura et al., 1988; Lu et al., 1989). It has also been suggested that paracrine-mediated pathways involving the stromal compartment play a role in prostate cancer progression (Camps et al., 1990; Chung et al., 1989; Chackel-Roy et al., 1989; Kabalin et al., 1989). Clinically, the interaction between prostate cancer cells and osteoblasts is apparent from the enhanced growth rate of bony metastatic lesions and accompanying osteoblastic
reaction. Primary benign and malignant prostatic neoplasms have been shown to express BFGF (Mydlo et al., 1988; Story et al., 1987). Prostatic osteoblastic factor, a soluble substance found in benign hyperplastic and malignant prostatic tissue that stimulates
osteoblasts, may well be a FGF-like substance (Jacobs et al., 1979; Nishi et al., 1988), although it may be a distinct and as yet undefined growth factor (Perkel et al., 1990).
Despite many studies, including those described above, it is evident that the factors involved in
prostatic carcinogenesis, progression and nonrandom metastasis remain poorly defined. Moreover, the actions of those few growth factors which have been shown to stimulate prostate cell growth in vi tro have not been examined in vivo . The identification of growth, factor (s) which exhibit prostate cell growth promoting activity in vivo would be an important development, creating new avenues of clinical investigation and treatment.
SUMMARY OF THE INVENTION
Accordingly, the present invention is directed to the identification and characterization of novel growth factors, primarily present in bone tissues, but also present in prostate tissues, that have the capability to promote normal prostate cell growth and prostate cancer cell growth and metastases. The invention is further directed to novel in vivo assay methods, both for the identification of factors which promote prostate cancer cell growth, and to the identification of potential therapeutic compounds for use in treatment strategies. This invention further concerns bone and prostate derived growth factor (BPGF) genes and nucleic acid segments, proteins, peptides, and related compositions, and methods of making and using such genes and proteins, for example in various diagnostic and treatment
embodiments. Also provided are nucleic probes and primers, vectors, and recombinant host cells. The present invention further encompasses the generation of monoclonal and polyclonal antibodies directed against these growth factor polypeptides and their use in cancer diagnosis and treatment.
In important embodiments, the present invention concerns the substantial purification of such prostate cell growth-promoting factor (s) from human bone tissues. The term "substantially purified human growth factor", as used herein, refers to a growth factor composition, isolatable from human bone fibroblasts, from which has been removed various non-growth-promoting components, and which composition substantially retains its prostate cell growth promoting activity.
Further embodiments of the present invention relate to methods of purifying one or more of the foregoing growth factors. A particularly preferred source for isolating such growth factors is the cell-conditioned media obtained from human bone or prostate fibroblasts. Such conditioned media were chosen by the inventors as a potential sources of prostate cell growth factors because of the frequent metastasis of prostate cancer to the axial skeleton. In that the human bone fibroblast conditioned media was found to be a particularly rich source of growth factors, it is contemplated to be the preferred starting material for the purification of such growth factors. However, other starting materials may also be employed such as, for example, human prostate cancers, human osteogenic sarcomas, or bone marrow aspirates, preferably obtained from prostate cancer patients.
The preferred approach used to isolate such growth factors involves first culturing human bone fibroblasts to produce the human growth factor polypeptides. After obtaining the growth factor polypeptides, for example, by removing conditioned media from the cells, the resultant cell-free polypeptides can then be assayed, characterized and used as a starting material for further purification of the growth factors. During the purification process, it is contemplated that assays will be conducted at various intervals using any one of, or a combination of, the assays methods disclosed herein. The method preferred by the present inventors to obtain a substantially purified human growth factor in accordance herewith is affinity chromatography, and in particular, affinity chromatography employing a heparin sepharose column. To perform heparin sepharose
chromatography in this manner one would first pass a sample of the cell-free growth factor polypeptides, for example, as contained within conditioned media, over the column in a low salt containing buffer, such as lOmM Tris/Hcl, lmM PMSF, pH 7.4, to allow binding to the column, and then wash the column with the same buffer to remove any non-binding species. The components that bind to the column can be eluted using the above buffer with an increased salt concentration, such as 1 M or 2 M NaCl, or by employing a buffered salt gradient, for example, of 0-3 M NaCl. Following assays of the eluted material the active fractions can be identified, and such fractions selected and pooled. The growth factors of the present invention are proposed to have utility in a variety of embodiments. Importantly, they are contemplated to be of use in vivo in stimulating the growth of prostate grafts. Also, in that the tumor formed under the stimulation of these growth factors was found to be extremely angiogenic, the growth factors of the present invention are also reasoned to be powerful angiogens, and as such are contemplated to have utility in further clinical embodiments. These include, for example, the promotion of wound healing, organ growth and/or regeneration, and the promotion of epithelial sprouting.
Furthermore, the growth factors can be used either alone, or in conjunction with other components, in novel tissue culture media. Although preferred, there is no general requirement that the growth factors be provided in their most purified state for use in such embodiments, indeed, it is contemplated that conditioned media
containing the growth factors could be suitably directly employed in tissue culture protocols.
Assays for prostate cell growth Various methods are contemplated to be of use in determining prostate cell growth, i.e., for use in assaying the activity of prostate growth-promoting factors. In preferred embodiments, it is contemplated that such assays may be directed to analyzing the growth of prostate cancer cells, rather than normal prostate cells, simply as a matter of convenience. Such assays include, but are not limited to, in vi tro assays such as the uptake and elution of crystal violet dye; the MTT assay for staining and quantitation of live cells in a culture dish; or the incorporation of radioactive, or non-radioactive labels, such as 3H-thymidine, or bromodeoxy uridine, respectively, into TCA-precipitable cellular DNA.
A preferred in vi tro assay for use in accordance with the present invention is contemplated to be the soft agar colony-forming assay. The soft agar colony-forming assay is an indication of transformation, as only
transformed cell types can grow in soft agar. Methods of conducting an assay of this kind will be known to those of skill in the art in light of the present disclosure. For example, one could first place placing agar, such as 0.6% (w/v) agar, into the bottom of each well on a plate, and seed the wells with an appropriate number of NbE-1 cells, such as 2,000 cells. A feeder layer of less concentrated agar, such as 0.3 to 0.4% (w/v) agar, containing the potential growth factor substances to be analyzed, would then be placed on top of the cells, from which the candidate substances can diffuse and come into contact with the cells. The number of soft agar colonies subsequently formed would be recorded after an
appropriate time interval, for example, on the order of 3 to 4 weeks after seeding. Both the cells and the agar could then be prepared and resuspended in media such as T-medium containing approximately between 5 and 10% foetal calf serum if desired.
A particularly important aspect of the present invention is the development of a novel in vivo assay for prostate cancer growth promoting activity. The
development of such an assay is based on the inventors' observations that although LNCaP human prostate cancer cells are nontumorigenic when administered at a dose of < 5 x 106 cells/site, to athymic mice, cancer formation can be induced following co-administration of the non- tumorigenic prostate cells with other cells or
compositions. This method therefore allows the inductive capabilities of any cell type, conditioned media, growth factor, hormone, carcinogen, or indeed, any substance one desires, to be examined following the co-administration of the substance and LNCaP cells, or other non- tumorigenic human cells, to mice.
The choice of LNCaP cells for use in such an assay is particularly preferred as such cells have certain advantageous features. For example, LNCaP cells produce prostate specific antigen (PSA), a human tissue-specific tumor marker, which can be as one method to monitor in vivo prostate cancer cell growth. Moreover, LNCaP cells are the only androgen-responsive human prostate cancer cells that can be consistently grown in vi tro . This is an important aspect of the invention that allows one to conduct parallel in vi tro and in vivo assays of various compounds using the same prostate cancer cell types.
To conduct such an assay to investigate the
capability of a given cell type to elicit LNCaP growth in vivo, one would preferably co-inoculate suitable athymic mice, such as 6-8 week old BALB/c mice, with a number of LNCaP cells and an approximately equivalent number of cells of the cell type to be investigated (herein
referred to as the "subject cell type"). Virtually any mode of co-inoculation is considered to be appropriate such as subcutaneous, intravenous, or intraperitoneal injection. The administration of 1 x 105 to 5 x 106 cells per inoculant of each cell type is preferred, with the administration of 1 x 106 LNCaP cells and 1 x 106 of the subject cells being particularly preferred. One would suspended the cells in an appropriate medium, such as RPMI 1640 with 10% foetal bovine serum (FBS), prior to injection. It is contemplated that one would also generally wish to perform parallel control studies to confirm the non-tumorigenic nature of the LNCaP and subject cells when administered independently. In such control studies one would administer the same number, or slightly more cells, such as in the order of 2 x 106 to 5 x 106 of each cell type .
Various methods are contemplated to be of use in assessing tumor development. The tumors can be measured at regular intervals and their volumes calculated
according to the formula L x W x H x 0.5236 (Janek et al., 1975). After sacrifice, the tumors may be excised, weighed, and subjected to various morphological and biochemical analyses as desired. Furthermore, the choice of LNCaP cells by the inventors also allows the serum levels PSA to be used as an indication of tumor
progression.
In further important embodiments, the present invention provides modifications of this in vivo assay model which have been developed to allow the
investigation of the effects of substances other than intact cells on prostate cancer growth. This modified method is based upon the adsorption of a concentrated substance onto a solid matrix and the co-administration of the matrix and LNCaP cells to the experimental animal. The adsorbed matrix serves as a reservoir for delivery of the particular substance to the live animal. It is contemplated that this method will be particularly useful for analyzing substances such as conditioned media from various cell types and the partially and fully purified growth factors.
To conduct such an assay one would modify the protocol described immediately above by substituting the co-administration of LNCaP cells with subject cells for the co-administration of LNCaP cells with the adsorbed matrix. A particularly preferred matrix for use in such embodiments is' Gelfoam which is commercially available from Upj ohn (Kalamazoo , MI), although it is believed that any sponge-like matrix, such as, for example, Matrigel, or even agar or agarose, may be employed. One would prepare the matrix under sterile conditions by firstly pre-soaking it with collagen IV, for example by exposure to 100 μg/ml collagen IV for 12 hours at 4°C, and then exposing it to the test compound (s). The adsorbed matrix would then be minced to allow subcutaneous inoculation, for example using a polytron. A suitable control for an assay such as this would be inoculation with Gelfoam presoaked with collagen IV alone.
In that either of the above methods can be utilized to generate an animal bearing a human prostate cancer, the present invention further provides an important model for use in screening for compounds with the potential to inhibit . the growth of human prostate cancer. To screen for a substance having the capability to inhibit, retard, or otherwise exert a negative effect on prostate cancer cell growth, one may administer the test substance either simultaneously with, or subsequent to, the administration of the cancer promoting agents, i.e., the LNCaP cells and the previously identified stimulatory cells or
substances. One would then determine the effect of the candidate inhibitory substance by measuring the degree of tumor formation or regression, or the prevention or inhibition of tumor growth, observed in the presence of the candidate inhibitory substance and comparing it to the tumor status in the absence of the potentially inhibitory substance.
Recombinant DNA methodology Important aspects of the present invention concern isolated DNA segments and recombinant vectors encoding bone and prostate derived growth factor (BPGF-1), and the creation and use of recombinant host cells through the application of DNA technology, that express bone and prostate derived growth factor.
As used herein, the term "DNA segment" refers to a DNA molecule that has been isolated free of total genomic DNA of a particular species. Therefore, a DNA segment encoding bone and prostate derived growth factor (BPGF) refers to a DNA segment that contains BPGF coding sequences yet is isolated away from, or purified free from, total human genomic DNA. Included within the term "DNA segment", are DNA segments and smaller fragments of such segments, and also recombinant vectors, including, for example, plasmids, cosmids, phage, viruses, and the like.
Similarly, a DNA segment comprising an isolated or purified BPGF gene refers to a DNA segment including BPGF coding sequences and, in certain aspects, regulatory sequences, isolated substantially away from other
naturally occurring genes or protein encoding sequences.
In this respect, the term "gene" is used for simplicity to refer to a functional protein, polypeptide or peptide encoding unit. As will be understood by those in the art, this functional term includes both genomic
sequences, cDNA sequences and smaller engineered gene segments that express, or may be adapted to express, proteins, polypeptides or peptides.
"Isolated substantially away from other coding sequences" means that the gene of interest, in this case
BPGF, forms the significant part of the coding region of the DNA segment, and that the DNA segment does not contain large portions of naturally-occurring coding DNA, such as large chromosomal fragments or other functional genes or cDNA coding regions. Of course, this refers to the DNA segment as originally isolated, and does not exclude genes or coding regions later added to the segment by the hand of man.
In particular embodiments, the invention concerns isolated DNA segments and recombinant vectors
incorporating DNA sequences that encode a bone and prostate derived growth factor that includes within its amino acid sequence an amino acid sequence in accordance with SEQ ID NO : 1, corresponding to that isolated from a human bone stromal cell line, MS. Moreover, in other particular embodiments, the invention concerns isolated DNA segments and recombinant vectors incorporating DNA sequences that encode BPGF that includes within its amino acid sequence the amino acid sequence of SEQ ID NO : 2 , corresponding to BPGF.
It will also be understood that amino acid and nucleic acid sequences may include additional residues, such as additional N- or C-terminal amino acids or 5' or 3' sequences, and yet still be essentially as set forth in one of the sequences disclosed herein, so long as the sequence meets the criteria set forth above, including the maintenance of biological protein activity where protein expression is concerned. The addition of
terminal sequences particularly applies to nucleic acid sequences that may, for example, include various non- coding sequences flanking either of the 5' or 3 ' portions of the coding region or may include various internal sequences, i.e., introns, which are known to occur within genes.
Naturally, the present invention also encompasses DNA segments that are complementary, or essentially complementary, to the sequence set forth in SEQ ID NO:1 Nucleic acid sequences that are "complementary" are those that are capable of base-pairing according to the
standard Watson-Crick complementarity rules. As used herein, the term "complementary sequences" means nucleic acid sequences that are substantially complementary, as may be assessed by the same nucleotide comparison set forth above, or as defined as being capable of
hybridizing to the nucleic acid segment of SEQ ID NO:1 under relatively stringent conditions such as those described herein in example 4.
It will also be understood that this invention is not limited to the particular nucleic acid and amino acid sequences of SEQ ID NOS : 1 and 2. Recombinant vectors and isolated DNA segments may therefore variously include the BPGF coding regions themselves, coding regions bearing selected alterations or modifications in the basic coding region, or they may encode larger polypeptides that nevertheless include BPGF-coding regions or may encode biologically functional equivalent proteins or peptides that have variant amino acids sequences. The DNA segments of the present invention encompass biologically functional equivalent BPGF proteins and peptides. Such sequences may arise as a consequence of codon redundancy and functional equivalency that are known to occur naturally within nucleic acid sequences and the proteins thus encoded. Alternatively,
functionally equivalent proteins or peptides may be created via the application of recombinant DNA
technology, in which changes in the protein structure may be engineered, based on considerations of the properties of the amino acids being exchanged. Changes designed by man may be introduced through the application of site- directed mutagenesis techniques, e.g., to introduce improvements to the antigenicity of the protein or to test BPGF mutants in order to examine growth promoting activity at the molecular level. If desired, one may also prepare fusion proteins and peptides, e.g., where the BPGF coding regions are aligned within the same expression unit with other proteins or peptides having desired functions, such as for
purification or immunodetection purposes (e.g., proteins that may be purified by affinity chromatography and enzyme label coding regions, respectively).
Encompassed by the invention are DNA segments encoding relatively small peptides, such as, for example, peptides of from about 15 to about 50 amino acids in length, and more preferably, of from about 15 to about 30 amino acids in length; and also larger polypeptides up to and including proteins corresponding to the full-length sequences set forth in SEQ ID NO: 2. Such DNA segments are exemplified by, but not limited to, DNA segments that have nucleic acid sequences in accordance with the sequence of SEQ ID NO:1. Recombinant vectors form important further aspects of the present invention. Particularly useful vectors are contemplated to be those vectors in which the coding portion of the DNA segment, whether encoding a full length protein or smaller peptide, is positioned under the control of a promoter. The promoter may be in the form of the promoter that is naturally associated with BPGF gene(s), e.g., in human cells, as may be obtained by isolating the 5' non-coding sequences located upstream of the coding segment or exon, for example, using
recombinant cloning and/or PCR technology, in connection with the compositions disclosed herein.
In other embodiments, it is contemplated that certain advantages will be gained by positioning the coding DNA segment under the control of a recombinant, or heterologous, promoter. As used herein, a recombinant or heterologous promoter is intended to refer to a promoter that is not normally associated with a BPGF gene in its natural environment. Such promoters may include CMV promoters normally associated with other genes, and/or promoters isolated from any other bacterial, viral, eukaryotic, or mammalian cell. Naturally, it will be important to employ a promoter that effectively directs the expression of the DNA segment in the cell type, organism, or even animal, chosen for expression. The use of promoter and cell type combinations for protein expression is generally known to those of skill in the art of molecular biology, for example, see Sambrook et al. (1989). The promoters employed may be constitutive, or inducible, and can be used under the appropriate conditions to direct high level expression of the introduced DNA segment, such as is advantageous in the large-scale production of recombinant proteins or peptides. Appropriate promoter systems contemplated for use in high-level expression include, but are not limited to, CMV, adenovirus, the T7 RNA polymerase promoter system described by Tabor & Richardson (1985) and the maltose binding protein-fusion protein system (Guan et al . , 1987; Nagai & Thogersen, 1987).
As mentioned above, in connection with expression embodiments to prepare recombinant BPGF proteins and peptides, it is contemplated that longer DNA segments will most often be used, with DNA segments encoding the entire BPGF protein or peptide fragments thereof, being most preferred. However, it will be appreciated that the use of shorter DNA segments to direct the expression of
BPGF peptides or epitopic core regions, such as may be used to generate anti-BPGF antibodies, also falls within the scope of the invention. DNA segments that encode peptide antigens from about 15 to about 50 amino acids in length, or more preferably, from about 15 to about 30 amino acids in length are contemplated to be particularly useful. DNA segments encoding peptides will generally have a minimum coding length in the order of about 45 to about 150, or to about 90 nucleotides. DNA segments encoding full length proteins may have a minimum coding length in the order of about 1620 nucleotides for a protein in accordance with SEQ ID NO:1.
In addition to their use in directing the expression of the BPGF protein, the nucleic acid sequences disclosed herein also have a variety of other uses. For example, they also have utility as probes or primers in nucleic acid hybridization embodiments. In still further embodiments, the present invention concerns the generation of antibodies, and particularly, monoclonal antibodies (mAbs) against the growth factor polypeptide (s) disclosed herein. Such mAbs will have utility in a variety of applications. These include, for example, the rapid purification of the growth factors by immunoaffinity chromatography, and the clinical use of mAbs or mAb-conjugates in diagnostic, prognostic,
imaging, and therapeutic strategies for the treatment of prostate cancer in man.
The in vivo human prostate cancer model disclosed herein is contemplated to be particularly useful in testing mAbs to identify those that are suitable for clinical use. For example, one may test the ability of mAbs or mAb-conjugates to inhibit prostate cancer growth or metastasis in the mouse model, prior to clinical trials in human subjects. It will be understood,
however, that mAbs which are not considered to meet the criteria for clinical use may nonetheless have utility in other embodiments, such as in growth factor purification by affinity column chromatography or in Western blotting, ELISA, or other immunological screening assays. It is proposed that such anti-growth factor mAb generation may be achieved most readily through the use of a modified immunization protocol. It is contemplated that the initial immunization of an experimental animal, such a mouse, would be performed according to the standard practice in the art. However, for the booster inoculation, the use of the following method is proposed to be advantageous in that it will allow the optimal exposure of splenocytes to the booster antigen. The immunized mice should be surgically opened to expose the spleen and a sterile solution of the growth factor antigens be injected directly into the spleen. The mouse would then be sutured and allowed to recover. Blood samples of the immunized mice may be analyzed for the presence of circulating antibodies to the growth factors, and those mice producing reasonable titers of circulating antibodies would be sacrificed and their spleens will be removed for cell fusion. A mouse myeloma cell line proposed to be of use for hybridization is the 8-azaguanine-resistant mouse murine myeloma SP2/0
non-producer cell line, which is known to be HAT
sensitive. Cells may be fused according to any of the methods known in the art, such as, by using polyethylene glycol (PEG), and later screened for antibody production, for example, by employing an ELISA or immunoblot
technique.
In particular embodiments, the invention concerns isolated DNA segments and recombinant vectors
incorporating DNA sequences that encode a BPGF protein or peptide that has an amino acid sequence essentially as set forth by a contiguous sequence selected from those disςlosed herein. The proteins encoded may be full length proteins, as represented by the 724 amino acids of the BPGF protein. Any of the DNA segments of BPGF may encode peptides of from about 15 to about 50, or more preferably, from about 15 to about 30 amino acids in length. Peptides may, of course, be of any length in this range, such as 16, 17, 18, 19 or 20 amino acids, or about 25, about 30, about 35, about 40, about 45 or about 50 amino acids in length, with "about", in this one context meaning a range of from 1 to 4 amino acids longer or shorter than the stated length . Accordingly, the DNA segments encoding such peptides will have coding lengths, excluding any regulatory sequences, of between about 45 to about 150, or preferably, of 45 to about 90, base pairs, with any length within or around these general guidelines being contemplated.
The term "a sequence essentially as set forth by a contiguous sequence from SEQ ID NO: 2" means that the sequence substantially corresponds to a contiguous portion of SEQ ID NO: 2 and has relatively few amino acids that are not identical to, or a biologically functional equivalent of, the amino acids of SEQ ID NO: 2. The term "biologically functional equivalent" is well understood in the art and is further defined in detail later herein. Accordingly, sequences that have between about eg., 70% and about 80%; or more preferably, between about 81% and about 90%; or even more preferably, between about 91% and about 99%; of amino acids that are identical or
functionally equivalent to the amino acids of SEQ ID NO: 2 will be sequences that are "essentially as set forth in SEQ ID NO: 2".
In certain other embodiments, the invention concerns isolated DNA segments and recombinant vectors that include within their sequence a nucleic acid sequence essentially as set forth by a contiguous sequence from the sequence SEQ ID NO:1, preferably, as set forth by a contiguous sequence from coding regions of SEQ ID NO:1. The term "essentially as set forth by a contiguous sequence from SEQ ID NO:1" is used in the same sense as described above and means that the nucleic acid sequence substantially corresponds to a contiguous portion of SEQ ID NO:1 and has relatively few codons that are not identical to, or functionally equivalent with, the codons of SEQ ID NO:1. The term "functionally equivalent codon" is used herein to refer to codons that encode the same amino acid, such as the six codons for arginine or serine, and also refers to codons that encode
biologically equivalent amino acids. Although such information is generally known to those of skill in the art, Table 1 is provided herein to clearly set forth this information.
Figure imgf000023_0001
It will also be understood that amino acid and nucleic acid sequences may include additional residues, such as additional N- or C-terminal amino acids or 5' or 3' nucleic acid sequences, and yet still be essentially as set forth in one of the sequences disclosed herein, so long as the sequence meets the criteria set forth above, including the production of a BPGF protein, where protein expression is concerned. The addition of terminal sequences particularly applies to nucleic acid sequences that may, for example, include various non-coding sequences flanking either of the 5' or 3' portions of the coding region or may include various internal sequences, i.e., introns, which are known to occur within genes.
The addition of 5' nucleic acid sequences that constitute regulatory regions, such as promoters and/or enhancers, is particularly contemplated by the inventors and the addition of any such sequence to any of those coding regions described above thus falls within the scope of the present invention.
Naturally, the present invention also encompasses DNA segments that are complementary, or essentially complementary, to the sequence set forth in SEQ ID NO:1, or contiguous stretches thereof. Nucleic acid sequences that are "complementary" are those that are capable of base-pairing according to the standard Watson-Crick complementarity rules. As used herein, the term
"complementary sequences" means nucleic acid sequences that are substantially complementary, as may be assessed by the same nucleotide comparison set forth above, or as defined as being capable of hybridizing to the nucleic acid segment of SEQ ID NO:1 under relatively stringent conditions such as those described in example 4.
The nucleic acid segments of the present invention, regardless of the length of the coding sequence itself, may be combined with other DNA sequences, such as
promoters, polyadenylation signals, additional
restriction enzyme sites, multiple cloning sites, other coding segments, and the like, such that their overall length may vary considerably. It is therefore
contemplated that a nucleic acid fragment of almost any length may be employed, with the total length being limited only by the desired ease of preparation and use in the intended recombinant DNA protocol. DNA segments of the invention may include within their sequence a nucleic acid sequence that is
essentially as set forth in any contiguous stretch of the sequences of SEQ ID NO:1. However, in certain
embodiments, it is contemplated that stretches from the coding regions will be preferred. As such, the invention provides protein and peptide-encoding segments of DNA that may be taken from any contiguous stretch of the coding sequences, such as from position 694 to position 2314 of SEQ ID NO:1, for BPGF peptides and proteins.
It will also be understood that the length and content of the nucleic acid and amino acid sequences disclosed herein is virtually unlimited, so long as the sequences are isolated free from their natural
environment and contain BPGF protein or DNA sequences. Recombinant vectors and DNA segments may therefore include BPGF protein encoding regions in combination with other functional sequences.
It is contemplated that nucleic acid segments of the present invention will have numerous uses, for example, in connection with the expression of peptides or
proteins, such as antigens, and also as probes and primers. Probes and primers based upon, or designed from, SEQ ID NO:1, will have use in various hybridization embodiments, regardless of whether they encode proteins or peptides or whether they are derived from non-coding segments. Nucleic acid segments that incorporate at least a 10-14 or 20 nucleotide long stretch that
corresponds to a sequence within SEQ ID NO:1 may be employed as a selective hybridization probe.
Such probes may be used for the detection of BPGF sequences in selected samples or to screen clone banks to identify clones that comprise corresponding or related sequences. The detection of BPGF sequences in samples, particularly in clinical samples, represents an important utility of the present invention as detection of BPGF is important in and of itself, and also as diagnosis of an increased risk of bone metastases and is a first element in designing an appropriate treatment regimen for a given disease or disorder.
This invention thus also provides molecular
biological methods for detecting BPGF in a suspected sample, including a clinical sample, as may be employed in the diagnosis of cancer or other neoplastic disease. Samples that may be analyzed include those such as biopsy of prostate or bone, or other tissue in which BPGF has activity
To conduct such a diagnostic method, one would generally obtain nucleic acids from the sample and contact the nucleic acids with a nucleic acid segment that encodes a BPGF protein or peptide, under conditions effective to allow hybridization of substantially
complementary nucleic acids, and then detect the presence of any hybridized substantially complementary nucleic acid complexes that formed. The presence of a
substantially complementary nucleic acid sequence in a sample, or a significantly increased level of such a sequence in comparison to the levels in a normal or
"control" sample, will thus be indicative of a sample that may show enhanced proliterative ability. Where a substantially complementary nucleic acid sequence, or a significantly increased level thereof, is detected in a clinical sample from a patient suspected of having prostate cancer, this will be indicative of a patient that may be susceptible to increased bone metastatic growth. As used herein, the term "increased levels" is used to describe a significant increase in the amount of BPGF nucleic acids detected in a given sample in comparison to that observed in a control sample, e.g., an equivalent sample from a normal healthy subject.
A variety of hybridization techniques and systems are known that can be used in connection detecting BPGF, including diagnostic assays such as those described in Falkow et al., U.S. Patent 4,358,535. Short coding or non-coding nucleic acid segment probes may also be employed as primers in connection with diagnostic PCR technology, as well as for use in any of a number of other PCR applications, including PCR-based cloning and engineering protocols.
In general, the "detection" of a BPGF sequence is accomplished by attaching or incorporating a detectable label into the nucleic acid segment used as a probe and "contacting" a sample with the labeled probe. In such processes, an effective amount of a nucleic acid segment that comprises a detectable label (a probe), is brought into direct juxtaposition with a composition containing target nucleic acids. Hybridized nucleic acid complexes may then be identified by detecting the presence of the label, for example, by detecting a radio, enzymatic, fluorescent, or even chemiluminescent label.
Many suitable techniques for use in the detection of BPGF nucleic acids will be known to those of skill in the art, these include, for example, in situ hybridization, Southern blotting and Northern blotting. In situ
hybridization describes the techniques wherein the target nucleic acids contacted with the probe sequences are those located within one or more cells, such as cells within a clinical sample or even cells grown in tissue culture. As is well known in the art, the cells are prepared for hybridization by fixation, e.g. chemical fixation, and placed in conditions that allow for the hybridization of a detectable probe with nucleic acids located within the fixed cell.
Alternatively, target nucleic acids may be separated from a cell or clinical sample prior to contact with a probe. Any of the wide variety of methods for isolating target nucleic acids may be employed, such as cesium chloride gradient centrifugation, chromatography (e.g., ion, affinity, magnetic), phenol extraction and the like. Most often, the isolated nucleic acids will be separated, e.g., by size, using electrophoretic separation, followed by immobilization onto a solid matrix, prior to contact with the labelled probe. These prior separation
techniques are frequently employed in the art and are generally encompassed by the terms "Southern blotting" and "Northern blotting."
Nucleic acid molecules having contiguous stretches of 10-14 , 20, 30, 50, or even of 100-200 nucleotides or so, that corresponds to, or are complementary to,
sequences from SEQ ID NO : 1 will have utility as
hybridization probes or primers. These probes will be useful in a variety of hybridization embodiments, which also include Southern and Northern blotting in connection with analyzing BPGF expression in various mammalian cells. The total size of fragment, as well as the size of the complementary stretch (es), will ultimately depend on the intended use or application of the particular nucleic acid segment. Fragments generally finding use in hybridization embodiments may have lengths of
complementary regions that vary between about 10-14 or 20 and about 100 nucleotides, or even up to the full length sequences of 1620 nucleotides (SEQ ID NO:1), according to the complementary sequences one wishes to detect. Recombinant Host Cells
The present invention also concerns recombinant host cells that include one or more DNA segments that comprise an isolated BPGF gene, as described herein. It is contemplated that virtually any cell may be employed as a recombinant host cell, but that certain advantages may be found in using a bacterial host cell, such as, for example, in the ease of cell growth and manipulation. Examples of preferred bacteria for use as recombinant host cells include, for example, E. coli. However, expression in eukaryotic cells is also contemplated, and exemplary cell lines that may be used include all those typically employed for eukaryotic expression, such as 239, AtT-20, HepG2, VERO, HeLa, CHO, WI 38, BHK, COS-7, RIN and MDCK cell lines.
The recombinant host cells of the invention may be employed to either propagate the vector and/or to express the various peptides and proteins described herein, allowing the encoded components to be obtained
essentially free of other human or mammalian components. That is, one may prepare such peptides or proteins by recombinant expression using a host cell other than human or mammalian; and/or produce the peptides or proteins at high levels so that their isolation directly results in a significantly enriched preparation. Preferred
recombinant host cells are those capable of expressing peptides and proteins with sequences essentially as set forth in SEQ ID NO:1.
Depending on the host system employed, one may find particular advantages where DNA segments of the present invention are incorporated into appropriate vector sequences that may, e.g., improve the efficiency of transfection of host cells. Where bacterial host cells are employed, it is proposed that virtually any vector known in the art to be appropriate for the selected host cell may be employed. Thus, in the case of E. coli, one may find particular advantages through the use of plasmid vectors such as pBR322, or bacteriophages such as λGEM-11. Further examples will be known to those of skill in the art, as exemplified in Sambrook et al.
(1989).
The recombinant host cells may be employed in connection with "overexpressing" BPGF proteins or peptides, that is, increasing expression over the natural expression levels in human or other mammalian cells, and may lead to the production of large quantities of proteins. Overexpression may be assessed by a variety of methods, including radio-labelling and/or protein
purification. However, simple and direct methods are preferred, for example, those involving SDS/PAGE and protein staining or Western blotting, followed by
quantitative analyses, such as densitometric scanning of the resultant gel or blot. A specific increase in the level of the recombinant protein or peptide, in
comparison to the level in natural human or mammalian cells, is indicative of overexpression. Various methods may be used to obtain or collect
BPGF proteins or peptides from cells, whether native or recombinant. For example, one method involves applying dialyzed bone fibroblast conditioned medium to a heparin sepharose affinity column, which was previously
equilibrated in 10 mM Tris-HCl buffer containing 0.1 mM
PMSF, pH 7.5. The column was washed with 3 -bed volume of 10 mM Tris-HCl buffer and eluted with a linear salt gradient of NaCl (0 to 3 M NaCl). Two ml fractions were collected and dialyzed against distilled water containing 0.1 mM PMSF at 4°C. Protein concentrations are
monitored by a spectrophotometer at 280 nM. Fifty ml of each fraction was used for the assessment of the stimulatory effect on the prostatic epithelial cells by soft agar colony forming assay.
Antibody Generation and Kits for Antigen Detection
The present invention further provides protein or peptide compositions, free from total bacterial cells, comprising purified BPGF protein or peptide that includes an amino acid sequence essentially as set forth by a contiguous sequence from SEQ ID NO:1. Such compositions may be obtained from natural or recombinant sources and may include proteins or peptides, proteins and peptides, or BPGF compositions alone, obtainable from recombinant hosts. The compositions may include full length BPGF proteins, and/or various peptides that include sequences in accordance with a 15 to about 50, or more preferably, to about 30 amino acid long sequence from SEQ ID NO:1.
The present invention thus also provides methods of generating an immune response, which methods generally comprise administering to an animal, including a human subject, a pharmaceutically acceptable composition comprising an immunologically effective amount of a BPGF protein or peptide composition. The composition may include partially or significantly purified BPGF proteins or peptides, obtained from natural or recombinant
sources. Smaller peptides that include reactive
epitopes, such as those between about 30 and about 50 amino acids in length will often be preferred.
By "immunologically effective amount" is meant an amount of a bone and prostate derived growth factor protein or peptide composition that is capable of
generating an immune response in the recipient animal. This includes both the generation of an antibody response (B cell response), and/or the stimulation of a cytotoxic immune response (T cell response). The generation of such an immune response will have utility in both the production of useful bioreagents, e.g., CTLs and, more particularly, reactive antibodies, for use in diagnostic embodiments, and will also have utility in various prophylactic or therapeutic embodiments.
Another means contemplated by the inventors for generating an immune response in an animal includes administering to the animal, or human subject, a
pharmaceutically acceptable composition comprising an immunologically effective amount of a BPGF factor nucleic acid composition (i.e., an amount capable of stimulating a B cell and/or T cell response). The stimulation of specific antibodies and CTL (cytotoxic T lymphocyte) responses upon administering to an animal a nucleic molecule is now well known in the art, as evidenced by articles such as Tang et al. (1992); and Fynan et al. (1993); each incorporated herein by reference. Immunoformulations of this invention, whether intended for vaccination, treatment, or for the
generation of antibodies useful in the detection of BPGF detection, may comprise whole growth factor proteins or antigenic peptide fragments from these proteins. As such, antigenic functional equivalents of the proteins and peptides described herein also fall within the scope of the present invention. An "antigenically functional equivalent" protein or peptide is one that incorporates an epitope that is immunologically cross-reactive with one or more epitopes of the bone and prostate growth factor proteins. Antigenically functional equivalents, or epitopic sequences, may be first designed or predicted and then tested, or may simply be directly tested for cross-reactivity.
The identification or design of BPGF factor
epitopes, and/or functional equivalents, that are suitable for use in immunoformulations, or simply as antigens (e.g., for use in detection protocols), is a relatively straightforward matter. For example, one may employ the methods of Hopp, as enabled in U.S. Patent 4,554,101, incorporated herein by reference, that teaches the identification and preparation of epitopes from amino acid sequences on the basis of hydrophilicity. The methods described in several other papers, and software programs based thereon, can also be used to identify epitopic core sequences, for example, Chou and Fasman (1974a, b; 1978a, b; 1979); address this subject. The amino acid sequence of these "epitopic core sequences" may then be readily incorporated into peptides, either through the application of peptide synthesis or
recombinant technology.
To confirm that a protein or peptide is
immunologically cross-reactive with one or more epitopes of the BPGF protein is also a straightforward matter. This can be readily determined using specific assays, e.g., of a single proposed epitopic sequence, or using more general screens, e.g., of a pool of randomly
generated synthetic peptides or protein fragments. The screening assays may be employed to identify either equivalent antigens or cross-reactive antibodies. In any event, the principle is the same, i.e., based upon competition for binding sites between antibodies and antigens. Suitable competition assays that may be employed include protocols based upon immunohistochemical assays, ELISAs, RIAs, Western or dot blotting and the like. In any of the competitive assays, one of the binding
components, generally the known element, such as BPGF protein or peptide, or the known antibody, such as a polyclonal antibody as set forth in SEQ ID NO: 3, SEQ ID NO: 4 or SEQ ID NO: 5, will be labeled with a detectable label and the test components, that generally remain unlabeled, will be tested for their ability to reduce the amount of label that is bound to the corresponding reactive antibody or antigen.
As an exemplary embodiment, to conduct a competition study between BPGF and any test antigen, one would first label BPGF with a detectable label, such as, e.g., biotin or an enzymatic, radioactive or fluorogenic label, to enable subsequent identification. One would then incubate the labelled antigen with the other, test, antigen to be examined at various ratios (e.g., 1:1, 1:10 and 1:100) and, after mixing, one would then add the mixture to a known antibody. Preferably, the known antibody would be immobilized, e.g., by attaching to an ELISA plate. The ability of the mixture to bind to the antibody would be determined by detecting the presence of the specifically bound label. This value would then be compared to a control value in which no potentially competing (test) antigen was included in the incubation.
The assay may be any one of a range of immunological assays based upon hybridization, and the reactive
antigens would be detected by means of detecting their label, e.g., using streptavidin in the case of
biotinylated antigens or by using a chromogenic substrate in connection with an enzymatic label or by simply detecting a radioactive or fluorescent label. An antigen that binds to the same antibody as BPGF, for example, will be able to effectively compete for binding to the anti-peptide polyclonal antisera and thus will
significantly reduce BPGF binding, as evidenced by a reduction in the amount of label detected. In further embodiments, the invention concerns relatively purified antibodies that bind to, or have binding affinity for BPGF proteins or peptides. Such relatively purified antibodies may be polyclonal or monoclonal and are distinct from those compositions that may be found in nature, e.g., as represented by the sera of an individual afflicted with prostate cancer, by virtue of their increased degree of purity. Even a polyclonal antibody raised in response to immunization with a purified, or enriched BPGF protein composition will be significantly distinct from the sera of an infected individual that contains a great diversity of antibodies.
Particular techniques for preparing antibodies in accordance with the invention are disclosed herein.
However, it is proposed by the inventors that any of the current techniques known in the art for the preparation of antibodies in general may be employed, through the application of either monoclonal or polyclonal
technology, and as represented by the generation of the anti-peptide polyclonal antisera. Antibodies that are cross-reactive with the anti-peptide antisera are also encompassed by the invention, as may be identified by employing a competition binding assay, such as those described above in terms of antigen competition. Antibodies of the invention may also be linked to a detectable label, such as a radioactive, fluorogenic or a nuclear magnetic spin resonance label. Biolabels such as biotin and enzymes that are capable of generating a colored product upon contact with a chromogenic substrate are also contemplated. Exemplary enzyme labels include alkaline phosphatase, hydrogen peroxidase and glucose oxidase enzymes.
In still further embodiments, the present invention concerns immunodetection methods and associated kits. It is contemplated that the BPGF proteins or peptides of the invention may be employed to detect antibodies having reactivity therewith, or, alternatively, antibodies prepared in accordance with the present invention, e.g., the peptide antibodies, may be employed to detect BPGF proteins or peptides. Either type of kit may be used in the immunodetection of compounds, present within clinical samples, that are indicative of prostate cancer or bone metastases. The kits may also be uses in antigen or antibody purification, as appropriate. In general, immunodetection methods will include first obtaining a sample suspected of containing such a protein, peptide or antibody, such as a biological sample from a patient, and contacting the sample with a first protein or peptide that is BPGF, or a first antibody that binds to a BPGF protein or peptide, as the case may be, under conditions effective to allow the formation of an immunocomplex (primary immune complex). One then detects the presence of any primary immunocomplexes that are formed.
Contacting the chosen sample with BPGF protein or peptide, or antibody thereto, under conditions effective to allow the formation of (primary) immune complexes is generally a matter of simply adding the protein, peptide or antibody composition to the sample. One then
incubates the mixture for a period of time sufficient to allow the added antigens or antibodies to form immune complexes with, i.e., to bind to, any antibodies or antigens present within the sample. After this time, the sample composition, such as a tissue section, ELISA plate, dot blot or western blot, will generally be washed to remove any non-specifically bound antigen or antibody species, allowing only those specifically bound species within the immune complexes to be detected.
The detection of immunocomplex formation is well known in the art and may be achieved through the application of numerous approaches known to the skilled artisan and described in various publications, such as, e.g., Nakamura et al. (1987), incorporated herein by reference. Detection of primary immune complexes is generally based upon the detection of a label or marker, such as a radioactive, florigenic, biological or
enzymatic label, with enzyme tags such as alkaline phosphatase, horseradish peroxidase and glucose oxidase being suitable. The antigen (e.g., BPGF) or antibody (e.g., anti-peptide antibodies) employed may itself be linked to a detectable label, wherein one would then simply detect this label, thereby allowing the amount of bound antigen or antibody present in the composition to be determined.
Alternatively, the primary immune complexes may be detected by means of a second binding ligand that is linked to a detectable label and that has binding affinity for the first protein, peptide or antibody. The second binding ligand is itself often an antibody, which may thus be termed a "secondary" antibody. The primary immune complexes are contacted with the labeled,
secondary binding ligand, or antibody, under conditions effective and for a period of time sufficient to allow the formation of secondary immune complexes. The secondary immune complexes are then generally washed to remove any non-specifically bound labelled secondary antibodies or ligands, and the remaining bound label is then detected.
For diagnostic purposes, it is proposed that
virtually any sample suspected of containing BPGF
proteins, peptides or antibodies sought to be detected, as the case may be, may be employed. Exemplary samples include clinical samples obtained from a patient such as blood or serum samples, prostate or bone biopsy samples, or other tissue samples. Furthermore, it is contemplated that such embodiments may have application to non- clinical samples, such as in the titering of antigen or antibody samples, in the selection of hybridomas, and the like.
In related embodiments, the present invention contemplates the preparation of kits that may be employed to detect the presence of BPGF factor proteins, peptides and/or antibodies in a sample. Generally speaking, kits in accordance with the present invention will include a suitable BPGF protein or peptide, or a first antibody that binds to a the BPGF protein or peptide, together with an immunodetection reagent, and a means for
containing the protein, peptide or antibody and reagent.
The immunodetection reagent will typically comprise a label associated with the protein, peptide or antibody, or associated with a secondary binding ligand. Exemplary ligands might include a secondary antibody directed against the first protein, peptide or antibody, or a biotin or avidin (or streptavidin) ligand having an associated label. Detectable labels linked to antibodies that have binding affinity for a human antibody are also contemplated, e.g., for protocols where the first reagent is a protein that is used to bind to a reactive antibody from a human sample. Of course, as noted above, a number of exemplary labels are known in the art and all such labels may be employed in connection with the present invention. The kits may contain antigen or antibody- label conjugates either in fully conjugated form, in the form of intermediates, or as separate moieties to be conjugated by the user of the kit.
The container means will generally include at least one vial, test tube, flask, bottle, syringe or other container means, into which the antigen or antibody may be placed, and preferably suitably allocated. Where a second binding ligand is provided, the kit will also generally contain a second vial or other container into which this ligand or antibody may be placed. The kits of the present invention will also typically include a means for containing the vials in close confinement for commercial sale, such as, e.g., injection or blow-molded plastic containers into which the desired vials are retained. Antisense RNA technology has been developed as one approach to inhibiting gene expression, particularly oncogene expression. An "antisense" RNA molecule is one which contains the complement of, and can therefore hybridize with, protein-encoding RNAs of the cell. It is believed that the hybridization of antisense RNA to its cellular RNA complement can prevent expression of the cellular RNA, perhaps by limiting its translatability. While various studies have involved the processing of RNA or direct introduction of antisense RNA oligonucleotides to cells for the inhibition of gene expression (Brown, et al., 1989; Wickstrom, et al., 1988; Smith, et al.,
1986;), the more common means of cellular introduction of antisense RNAs has been through the construction of recombinant vectors which will express antisense RNA once the vector is introduced into the cell.
A principal application of antisense RNA technology has been in connection with attempts to affect the expression of specific genes. For example, Delauney, et al . have reported the use antisense transcripts to inhibit gene expression in transgenic plants (Delauney, et al., 1988). These authors report the down-regulation of chloramphenicol acetyl transferase activity in tobacco plants transformed with CAT sequences through the
application of antisense technology. Antisense technology has also been applied in attempts to inhibit the expression of various oncogenes. For example, Kasid, et al., 1989, report the preparation of recombinant vector construct employing Craf-1 cDNA fragments in an antisense orientation, brought under the control of an adenovirus 2 late promoter. These authors report that the introduction of this recombinant
construct into a human squamous carcinoma resulted in a greatly reduced tumorigenic potential relative to cells transfected with control sense transfectants. Similarly, Prochownik, et al., 1988, have reported the use of Qmyc antisense constructs to accelerate differentiation and inhibit G1 progression in Friend Murine Erythroleukemia cells . In contrast, Khokha, et al., 1989, discloses the use of antisense RNAs to confer oncogenicity on 3T3 cells, through the use of antisense RNA to reduce murine tissue inhibitor or metalloproteinase levels.
In certain embodiments of the invention, inhibition or suppression of BPGF-1 gene expression is desired and antisense molecules will be employed. By preparing a construct that encodes an RNA molecule that is in
antisense or "complementary" configuration with respect to the RNA readouts of BPGF-1, the construct will act to inhibit or suppress the ultimate expression of the target gene, presumably by binding to the target RNA and thereby preventing its translation.
BRIEF DESCRIPTION OF THE DRAWINGS
FIG. 1. Histomorphological and immunohistochemical characterization of fibroblast-induced LNCaP chimeric tumors. Hematoxylin and eosin-stained sections (a-c) reveal differences between LNCaP/rUGM tumors in male (a) and female (b) hosts, the former a carcinosarcoma, the latter a pure sarcoma with no epithelial component.
LNCaP/MS tumors (c) formed only in male hosts and histologically are vascular carcinomas with a minor mesenchymal component. Immunohistochemical staining with monoclonal antibodies against PSA (d-f) demonstrates intense and generalized staining of the epithelial cells in only male LNCaP/rUGM (d) and LNCaP/MS (f) tumors but not of the sarcomatoid LNCaP/rUGM tumors (e) in female mice. LNCaP/3T3 tumors are sarcomas histologically similar to LNCaP/rUGM tumors in females and also stained negatively for PSA.
FIG. 2. Southern and Northern analysis of
fibroblast-induced LNCaP chimeric tumors. Portions of tumors removed at the time of sacrifice were processed separately for DNA and RNA isolation as described in the detailed examples. Controls consisted of human bladder cancer (+) and rUGM (-) cell DNA. Various concentrations of DNA. were loaded and probed for repetitive Alu
sequences to identify human cells. RNA, 20μg, was loaded and probed with a complementary DNA probe for PSA. (a), Southern dot blot of LNCaP/rUGM tumors demonstrating variably positive Alu in 6 or 7 tumors from male hosts (lanes 1-7) and 0 or 3 tumors from female hosts (lanes 1- 3). Northern analysis of corresponding tumors
(a, bottom) demonstrates PSA expression only in tumors from male hosts. PSA expression did not correlate with alu expression, likely resulting from varied tissue selection from a heterogenous tumor. (b), Southern analysis of LNCaP/3T3 tumors reveals no human component in these tumors (lanes a-e), while all LNCaP/MS tumors were positive for Alu (lanes f-j). Northern analysis of
LNCaP/MS tumors (b, bottom) demonstrates that all are strongly positive for PSA.
FIG. 3. Differences in serum PSA levels (ng/ml) in animals with various LNCaP chimeric tumors paralleled their differences in histomorphology. Mice bearing tumors characterized as carcinosarcomas (LNCaP/rUGM) or carcinomas (LNCaP/MS or LNCaP/NbF-1) (a) had elevated serum PSA levels (b), while mice bearing sarcomas or no tumors had undetectable serum PSA levels ( < 0.3 ng/ml). MS bone fibroblasts were the most reliable inducer of LNCaP carcinoma formation and resulted in the highest PSA levels, with a median of 68.1 ng/ml.
FIG. 4. LNCaP cells are androgen sensitive in vi tro. (a), LNCaP cells were stimulated in vi tro by androgens with a 182 and 142% increase in cell growth with 1.0 nM testosterone (T) and 0.1 nM
dihydrotestosterone (DHT), respectively. No mitogenic response was observed for rUGM cells using androgens in concentrations ranging from 0.1 to 100 nM. (b), androgen receptor assays demonstrated the presence of a
substantial amount (Bmax = 332 fmol/mg protein) of high- affinity (Kd = 0.22 nM) androgen receptors in LNCaP cells. Points, averages of 6 replicated determinations from 3 separate studies; bars, SE ranging from 3-9%.
FIG. 5. Effect of defined growth factors on LNCaP cell growth in vi tro . The growth of LNCaP cells are stimulated in vi tro by bFGF in a concentration-dependent manner (a), producing a 180% increase in cell number over 9 days. Both TGFo. and EGF had no significant effect on LNCaP growth in vi tro using concentrations from 0.1 to 50 ng/ml. A 50% reduction in LNCaP cell growth was produced by 0.1 ng/ml TGFβ (b). Points, averages of 6 replicated determinations from 3 separate studies; bars, SE ranging from 3-9%.
FIG. 6. Stimulation of LNCaP cell growth in vi tro by prostate- and bone-derived conditioned media. (a), LNCaP cells are stimulated up to 210% in a concentration- dependent manner from 0.1- to 1.0-fold by rUGM
conditioned media and are also stimulated by NbF-1 and MS conditioned media, but not by 3T3, CCD16, or NRK conditioned media. (b), a bidirectional paracrine- mediated stimulatory pathway exists between LNCaP cells and rUGM and MS fibroblasts. rUGM cells are stimulated up to 400% in a concentration-dependent manner from 0.1- to 2-fold by LNCaP conditioned media and also less so by NbF-1, MS, 3T3, and CCD16 conditioned media. No
autocrine growth loop was demonstrated as evidenced by lack of stimulation of LNCaP conditioned media on LNCaP cells or rUGM conditioned media on rUGM cells. Columns, averages of 6 replicated determinations from 3 separate studies; bars, SE ranging from 2-7%.
FIG. 7. rUGM and MS conditioned media stimulate LNCaP tumor growth in vivo . Gelfoam, a solid form of slowly absorbable gelatin, was used as a reservoir for delivery of biologically active factors to determine whether LNCaP tumor growth could be induced by fibroblast conditioned media in vivo in the absence of stromal cells. Gelfoam was adsorbed with 100 μg/ml collagen IV for 12 hours followed by EGF, bFGF, or stromal
conditioned media. LNCaP cells, 2 x 106, were inoculated s.c. with treated Gelfoam, except at some control sites, where ECGF-treated Gelfoam was injected alone to detect angiogenesis. Angiogenesis was visible after 3 weeks when Gelfoam plus collagen IV adsorbed with ECGF was injected (b). At rUGM conditioned media-treated sites, 5 of 10 (50%) tumors formed by 10 weeks (mean tumor volume, 278 mm3). With MS conditioned media-treated Gelfoam, 3 tumors formed at 8 sites (38%). bFGF was also tested because of its in vi tro mitogenic activity and induced tumor formation at 3 of 5 sites (60%). All tumors were histologically carcinomas and stained intensely and uniformly for PSA (c). Southern blot analysis for Alu and corresponding Northern analysis for PSA expression are both positive (d). FIG. 8. Heparin affinity column chromatography of human bone stromal conditioned media. 560 mg total MS conditioned media protein was loaded onto the column. The column was washed with 10 mM Tris-HCl, ImM PMSF, pH 7.4, before eluting with a continuous salt gradient of
0 to 3 M NaCl. The tumor inducing activity was recovered prior to elution with 2 M NaCl.
FIG. 9. SDS-PAGE analysis of the active fractions (1 M NaCl-eluted fractions) from heparin sepharose chromatography. Track 1, high-molecular weight markers; track 2, control media; track 3, active fractions.
FIG. 10. Effect of various growth factors
antibodies antagonizing the efficiency of soft agar colony formation of prostatic epithelial cells induced by partially purified bone stromal conditioned media.
FIG. 11. Identification of a human growth factor polypeptide with an apparent molecular weight on SDS/PAGE of approximately 157 kD. This polypeptide, present within human bone marrow, is identified by its reactivity with the mAb MS 329 in Western blot analyses. BM, bone sample; TM, control media sample. The Mrs of the
molecular weight standards are indicated to the left.
FIG. 12. Schematic Representation of the BPGF-1 Sequence and Limited Restriction Enzyme Map. The solid box represents the ORF starting from the ATG 694 and ending to TGA 2314.
FIG. 13A. Stimulation of Rat Prostate NbE-1 Cell Growth by Conditioned Medium from BPGF-1 Transfected COS-1 Cells. NbE-1 cells were plated at approximately 2000 cells per well in 96-well plate. Medium conditioned by COS-1 cells transfected with wither BPGF-1 or vector alone (open square) was added to the cells. Cells were assayed for proliferation after 3, 5, 7 days of growth by crystal violet assay. The data plotted represent the mean of quadruplicate wells +/- SD. FIG. 13B. Supernatants conditioned by BPGF-1
Transfected COS-1 Cells Stimulate the
Anchorage-Independent Growth of NbE-1 Cells.
Supernatants from BPGF-1 transfected COS-1 cells or vector-transfected cells were concentrated 10-fold for use in this study. Cell input at the initiation of the study was approximately 2000 cells per well. Each bar represents the mean number +/- SD of OD from
quadruplicate wells. FIG. 14. Northern Blot Analyses of BPGF-1
Expression. Total RNA (10 μg) isolated from MS cells was subjected to Northern blot. The filter was hybridized with the BPGF-1 cDNA. Position of 28 S and 18 S RNA are shown at the right.
FIG. 15. Southern Blot Analysis of DNA from Human Prostate PC-3 Cells Using the Entire BPGF-1 As a Probe. The probe was radiolabeled using random priming
hybridization and washing of the blot was done at 65°C, and the final washing stringency was 0.1 X SSC, 0.1% SDS.
FIG. 16. The Effect of BPGF-1 Gene Expression in LNCaP Cells Treated with Varieties of Growth Factors. Confluent LNCaP cells were kept in serum-free T medium. After 24 h, fresh medium was added and some cultures were supplemented with growth factors, as indicated above.
After 24 h of culture, the cells were collected and cellular RNA prepared. The RNAs were subjected to
Northern Blot analysis.
FIG. 17. Immunoblot Analysis of Recombinant BPGF-1 Expression in E.coli. The entire cDNA of BPGF-1 was ligated to pTricHis B, and expressed in Bacteria. Cell lysis was subjected to PAGE-SDS and blot to the
membranes. Lane 1, uninduced by IPTG. Lane 2, induced by IPTG. The molecular marker is indicated on the left.
FIG. 18. Identification of BPGF-1 Protein Using Anti-Peptide Antibodies. Ten μg of MS1 fraction was loaded in the gel. The molecular weight marker was shown on the right.
FIG. 19. Morphological Changes Induced by BPGF-1 cDNA Expressed in PC-3 Cells. Micrographs of the PC-3 parental in high intensity (a), and in low intensity (c). PC-3 cell transfected with BPGF-1 cDNA in high intensity (b), and in low intensity (d). Cells were cultured in T-medium with 5% FCS, and photographed with inverted microscope.
DETAILED DESCRIPTION OF THE PREFERRED EMBODIMENTS
Previous studies demonstrated that a cell-cell recombination model in which co-inoculation of
nontumorigenic epithelial and organ-specific mesenchymal cells (e.g. bone and prostate) results in solid tumor formation in vivo (Camps et al., 1990, Gleave et al., 1991, Chung et al., 1989). Soluble factors secreted by the prostate and bone stromal cells enhanced
anchorage-independent growth of prostate epithelial cells in vi tro and tumor growth in vivo (Chung et al., 1992, Gleave et al., 1991). Alternatively, by co-inoculating nontumorigenic prostatic epithelial cells with selective growth factor (s) and extracellular matrix immobilized on Gelfoam also results in solid tumor formation in vivo (Chung et al., 1992). In the present invention, the identification and cloning of a human bone mesenchymal derived factor, or bone and prostate derived growth factor (BPGF-1), is shown. Prostatic carcinoma cells show an increased responsiveness to the growth-promoting activity of BPGF-1. Sequence analysis revealed that BPGF-1 shares no homology with the known sequences in the GenBank. Surprisingly, BPGF-1 is deferentially expressed in human bone and prostate, not in cells or tissues derived from other organs.
Isolation of the BPGF-1 cDNA clones The inventors screened a cDNA expression library with a polyclonal antibody specifically against MS-1 fraction and isolated the clones that encodes an BPGF-1 protein. The full-length cDNA sequence of clone BPGF-1 (3171 bp) corresponds well with the observed size of the BPGF-1 transcript of about 3.3 kb, suggesting that virtually the complete mRNA sequence has been isolated in cDNA form. Northern blotting using BPGF-1 cDNA as a probe detected two mRNA transcripts with approximately equal intensity in human bone and prostate cells. There is one single BPGF-1 gene as evidence by Southern blot analysis.
Differential Expression of BPGF-1 Gene
From previous studies, it has been observed that organ-specific stromal (bone and prostate) cells, but not cells from lung or kidney, accelerated human prostatic carcinoma growth both in vi tro and in vivo ( Gleave et al., 1991). These results imply the possible existence of a tissue-specific factor (s) that stimulate prostatic carcinoma cell growth. The present invention shows the existence of BPGF-1 that is tissue specific and expressed predominantly in bone, seminal vesicles, and prostate, with substantially higher levels in bone than in prostate (at least 50 times higher in bone than in prostate), although it is also present in minute quantities in other tissues. It is likely that the expression of BPGF-1 in qualitatively and quantitatively different in various tissues , along with the stimulation of prostatic
carcinoma cell growth by BPGF-1, may contribute in part to the preference of prostatic carcinoma metastases in the bone.
The Biological Role of BPGF-1
Various factors are thought to be involved in mediating the proliferation of cells, the differentiation of cells, or both. Many soluble factors and their
corresponding receptors have been implicated in normal and abnormal prostate growth and development (Davies et al.,1988, Fiorelli et al., 1991, Chung et al., 1992). These include EGF and its receptor (Kishi et al., 1988, Fowler et al., 1988), TGF-α (Wilding et al., 1989 a),
TGF-β (Wilding et al., 1989 b), FGF (Ikeda et al., 1987, Danielpour et al., 1989, Nakamoto et al., 1992), PDGF (Sitaras et al., 1988), IGF (Cohen et al., 1991), HGF/SF (Nakamura et al., 1986, Nakamura et al., 1989, Weidner et al., 1991, Montesano et al., 1991), KGF (Rubin et al., 1992), and NGF (Djakiew et al., 1991). Recent studies have shown that certain factors present in human bone marrow are able to stimulate human prostatic carcinoma cell growth (Gleave et al., 1991, Rossi et al., 1992, Chung et al., 1992). One of these factors has been further identified as transferrin (Rossi et al., 1992).
The inventors show that expression of the
full-length of the BPGF-1 cDNA stimulates the growth of human and rat prostatic carcinoma cells. It was also observed that expression of the full-length of the BPGF-1 cDNA in human prostate PC-3 cells line results in the change of the cell morphology. The morphology of the BP cell line (transfected with BPGF-1) is different from the parental PC-3 cell line (FIG. 19). BP cells were more elongated, and piled up when they reached confluence. These results indicate that BPGF-1 is capable of functioning as a proliferation factor on human and rat prostate cells.
The identification of a cDNA clone encoding the BPGF-1 protein will help to understand the interaction between the bone and the prostate. Rossi et al. (1992) proposed that high concentration of transferrin in the bone marrow may stimulate rapid proliferative growth of prostatic carcinoma cells once the cells have become lodged in the vertebral marrow cavity. The present results extend that finding to show that tissue-specific expression of BPGF-1 in the bone and prostate, coupled with the stimulation of prostatic carcinoma cells by BPGF-1, may account for the preferential colonization of the vertebrae by metastatic prostatic carcinoma cells.
The present disclosure presents the results from studies directed to identification and characterization of growth factors which promote prostate cell growth. Also examined is the question of whether
fibroblast-specificity exists in affecting the growth of human prostate cancer, and in particular, of the lymph node derived prostate cancer cell line (LNCaP). LNCaP cells were chosen for several reasons.
Firstly, LNCaP cells have previously been shown to be nontumorigenic when injected subcutaneously in athymic mice with less than 4 x 106 cells/inoculum (Horoszewicz et al., 1983). This observation was confirmed by the present inventors, and further extended by their
discovery that LNCaP cells are nontumorigenic even at higher doses. Thus the inductive capabilities of specific fibroblasts can be examined following their co-administration to mice along with LNCaP. Secondly, the LNCaP cell line is the only prostate cell line that produces prostate specific antigen (PSA) (Papsidero et al., 1981), a human tissue-specific tumor marker used clinically to monitor in vivo prostate cancer cell growth (Stamey et al, 1987; Ford et al., 1985). Thirdly, LNCaP cells are androgen-responsive both in vivo (Sonnenschein et al., 1989) and in vi tro (Schuurmans et al., 1989) which provides scope for the sex-dependent differences in chimeric tumor growth to be assessed.
Furthermore, and importantly, of the androgen- responsive human prostate cancer models available, including PC82, HONDA, and LNCaP cell lines, only the
LNCaP can be consistently grown in vi tro (Isaacs, 1987). The inventors have exploited these properties in the development of parallel in vi tro and in vivo cell-cell interaction assays. This allows, for the first time, the results from dual model systems using the same cell types and factors to be assessed. Moreover, results from such coordinated in vi tro and in vivo studies can be more confidently applied to the clinical situation. The in vivo assay system disclosed herein is based upon the co-administration of LNCaP cells to athymic mice along with another cell type or composition. The effect of the cells or composition being analyzed can then be assessed by determining the degree of tumor growth in the co-inoculated animals and comparing it the control growth observed (if any) in animals given either LNCaP cells, or the test composition, alone.
To analyze compositions other than intact cells, the inventors have developed a modified version of the assay. This is based upon the adsorption of concentrated
substance (s) onto a solid matrix and the coadministration of the matrix and LNCaP cells to an experimental animal where the adsorbed matrix acts as a reservoir for the in vivo delivery of the test
substance (s). It is contemplated that this method will be particularly useful for analyzing substances such as conditioned media from various cell types and known growth factors.
The results disclosed herein demonstrate that certain fibroblasts can induce LNCaP tumor growth in vivo in a cell-type specific and androgen-dependent manner. Of the 6 fibroblast cell lines analyzed, bone
fibroblasts, followed by the prostate-derived
fibroblasts, were found to be the most effective in stimulating LNCaP cell growth both in vivo and in vi tro. The presence of bidirectional paracrine pathways between LNCaP and fibroblast cells is illustrated in vivo by the development of sarcomas with the co-inoculation of LNCaP cells and nontumorigenic rUGM and 3T3 fibroblasts.
Similar effects are also apparent in vi tro as LNCaP and rUGM conditioned media produce bidirectional increases in growth in a paracrine-, but not autocrine-, mediated fashion. These observations suggest that LNCaP and fibroblast cells secrete factors that produce a more favorable microenvironment for tumorigenesis by
reciprocally promoting growth, adherence or angiogenesis.
LNCaP cells participated in chimeric tumor formation preferentially in males, demonstrating initial in vivo androgen-sensitive growth. These results, along with their in vi tro androgen sensitivity, further support the view that the initial growth of LNCaP cells in vivo may be androgen-responsive (Sonnenschein et al., 1989). Using this novel method, the LNCaP androgenrefractory cell lines, C4 and C5 have been shown, for the first time, to be tumorigenic and to secrete high levels of PSA autonomously, i.e., in the absence of androgen. Both, of these characteristics are typically found in human prostate cancer as it undergoes transformation to enter the hormonally refractory state. Furthermore, the inventors' finding that hormonally refractory prostate cancer cells secrete specific autocrine protein factor (s) that induce PSA gene expression by the prostate cells is important as, to date, there have been no reports
concerning this area of investigation. The
identification of factor (s) produced by such refractory cells may impact on the development of new therapeutic approaches to address the problem of hormonally
refractory prostate cancer cell growth. Results from studies using a solid matrix adsorbed with conditioned media indicated that non-dialyzable factor (s) from bone fibroblast conditioned media samples alone could indeed induce LNCaP growth in vivo. This is the first demonstration that LNCaP tumor growth in vivo can be initiated by specific soluble growth factors derived from fibroblast cells. These results underscore the importance of growth factors in prostate cancer growth and progression. In further purifying the growth factors, by
employing heparin sepharose chromatography, it was determined that the substantially purified fraction contained novel polypeptides with apparent molecular weights on SDS/PAGE of: 227, 223, 218, 157, 90, 80, 48, and 20kD. These polypeptides were found to be distinct from bFGF by a number of criteria including differential elution from heparin sepharose columns and distinct immunoreactivity. The presence of the novel 157 kD polypeptide within the active fractions was not initially detected, presumably as it was masked by an irrelevant and inactive polypeptide also present in the control media. Its presence was shown following the generation of an anti-growth factor mAb, MS 329, which reacts with a 157 kD protein which is present in the active fractions, but absent from the control media (FIG. 11). Skeletal tissues are known to produce various growth factors (Canalis et al., 1988; Wergedal et al., 1986; Sampath et al., 1986; Globus et al., 1989; Hauschka et al., 1986) including bFGF (Globus et al., 1989).
Osteoblasts are the principal source of synthesis and deposition of bone matrix and the site where bFGF is stored and mediates its mitogenic activity (Globus et al., 1989; Hauschka et al., 1986). bFGF promotes LNCaP cell growth, and may also act in a paracrine fashion to stimulate metastatic cancer cell growth (Lu et al., 1989; Ensoli et al., 1989), but bFGF itself does not appear to be an active component of the growth factors disclosed herein. However, as anti-bFGF antibodies inhibited the bone fibroblast growth factor stimulatory action on prostate epithelial cells, albeit only slightly, the possibility remains that a bFGF-like protein may be responsible, in part, for the growth factor activity which stimulates prostate cell growth in vivo and in vi tro.
EXAMPLE 1
Acceleration of Human Prostate Cancer Cell Growth
In vitro and In Vivo by Factors Produced by
Prostate and Bone Fibroblasts
Materials and Methods
1. Cell Lines and Cell Culture. LNCaP cells, passage 29, were obtained from Dr. Gary Miller (University of Colorado, Denver, CO) and grown in RPMI 1640 (Irvine Scientific, Santa Anna, CA) with 10% fetal bovine serum (FBS). Phenotypically, the cells resembled parental lines as evidenced by the results of karyotypic analysis and androgen receptor analysis (see below). The six nontumorigenic mesenchymal cell lines analyzed in this study are as follows: a fetal urogenital sinus mesenchyme-derived cell line (rUGM) from 18-day old Noble rat fetuses, developed as described by Chung et al., 1984. rUGM cells were maintained in DMEM (Gibco
Laboratories, Grand Island, NY), 5% calf serum (CS), and passages 14-16 were used. A human bone fibroblast cell line, MS, derived from an osteogenic sarcoma, was
established by Dr. A. Y. Wang (The University of Texas M. D. Anderson Cancer Center, Houston, TX). MS cells were maintained in T-medium (80% DMEM, 20% F12K [Irvine
Scientific], 3 g/l NaHCO3, 100 u/ml penicillin G, 100 μg/ml streptomycin, 5 μg/ml insulin, 13.6 pg/ml
triiodothyronine, 5 μg/ml transferrin, 0.25 μg/ml biotin, and 25 μg/ml adenine) with 5% FBS; passages 29-33 were used. A rat prostatic fibroblast line, NbF-1, was established from normal Noble rat ventral prostate gland as described previously (Chang & Chung, 1989). NbF-1 cells were maintained in DMEM and 5% CS and
nontumorigenic passages 18-22 were used. Normal adult human lung fibroblasts, CCD16 (American Tissue Culture Catalogue CCL 204), were supplied by Dr. J. Roth (Dept. of Thoracic Surgery, UT M. D. Anderson Cancer Center, Houston, TX), and passages 14-16 were used. NIH-3T3 cells (ATCC #6587), derived from embryonic mouse tissue, were supplied by Dr. D. Becker (UT M.D. Anderson Cancer Center, Houston, TX) and maintained in DMEM with 5% CS. Normal rat kidney (NRK) fibroblasts (ATCC #6509) were grown in DMEM with 5% CS and passages 10-12 were used.
Conditioned media from LNCaP and all 6 fibroblast cell lines was collected and prepared as follows: Cells were cultured in 150 mm tissue culture dishes (Falcon, Becton Dickinson Laboratories, Lincoln Park, NJ) with T-medium, 2% TCM, a serum-free defined media supplement (Celox Co., Minnetonka, MN), and 1% FBS until 60-70% confluent, washed with PBS/EDTA and changed to serum-free T-medium containing 2% TCM only. After 48 hours, the conditioned media was removed, filtered through a 0.2 μm filter (Nalge Co., Rochester, NY), and 0.1 mM
phenylmethyl-sulfonylfloride (PMSF, Sigma) was added. Protein concentrations in the conditioned media were determined using a protein assay (Bio-Rad Laboratories, Richmond, CA) , and ranged from 70-100% of control
(T-medium and 2% TCM; 1.3 mg/ml). The conditioned media was dialyzed at 4°C against distilled water containing 0.1 mM PMSF using Spectra/Por 3 dialysis membranes (Mr > 3500 dalton, PGC Scientifics, Gaithersburg, MD) for 96 hours, changing the water after 48 hours. The samples were lyophilized to dryness and reconstituted in T-medium to ten times concentration (10x), filtered, and diluted to the desired working concentration (0.1 to 2x) with T-medium containing 2% TCM.
2. Assessment of in vivo Tumor Growth. To determine the ability of specific fibroblasts to elicit LNCaP growth in vivo, 6-8 wk old athymic nude mice (BALB/c strain, Charles River Laboratory, Wilmington, MA) of both sexes were co-inoculated subcutaneously with 1 x 106 LNCaP cells and 1 x 106 of one of the 6 fibroblast cell lines described above. Up to 5 x 106 LNCaP cells and 2 x 106 of each of the fibroblast cell lines were injected alone as controls to assess their
tumorigenicity. The cells were suspended in 0.1 ml of RPMI 1640 with 10% FBS prior to injection and inoculated via a 27 gauge needle. Tumors were measured twice weekly and their volumes were calculated by the formula
L x W x H x 0.5236 (Janek et al., 1975). At the time of sacrifice, sternotomy was performed and a cardiac
puncture was carried out to obtain serum for PSA
analysis. Tumors were excised, weighed, and subjected to various morphological and biochemical analyses (see below). Further studies were performed to determine whether LNCaP tumor growth in vivo could be affected by soluble growth factors alone. LNCaP cells were injected along with a Gelfoam preparation (Upjohn, Kalamazoo, MI), adsorbed with type IV collagen (Collaborative Research, Bedford, MA), endothelial cell derived growth factor (ECGF) (Collaborative Research), and ten times
concentrated rUGM or MS conditioned media. This novel matrix system was developed through modification of a previously described procedure (Thompson et al., 1988) and serves as a reservoir for delivery of biologically active factors in vivo . ECGF was chosen as a marker of physiologic response to determine whether it could retain its biologic activity during this procedure, and whether this angiogenesis alone would be sufficient to promote tumor formation. rUGM and MS conditioned media were used because these cells could induce LNCaP growth in vivo. Basic fibroblast growth factor (bFGF, Collaborative Research) was also used because of its mitogenic effect on LNCaP cells in vi tro (see below).
Under sterile conditions, Gelfoam, a solid gelatin sponge, was pre-soaked with 100 ug/ml collagen IV for 12 hours at 4°C, followed by either 1 μg/ml ECGF, bFGF, or ten times concentrated stromal conditioned media for 1 hour. The Gelfoam was then minced using a polytron to allow subcutaneous inoculation via an 18 gauge needle. Following subcutaneous injection of 0.1 ml Gelfoam, the same site was injected with 2 x 106 LNCaP cells using a 27 gauge needle. For controls, 2 x 106 LNCaP cells were inoculated with Gelfoam and collagen IV, with or without ECGF. Tumor incidence and size was monitored as
described above. 3. Histology and Immunohistochemistry.
For routine histology, specimens were fixed in 10% neutral buffered formalin and embedded in paraffin.
Eight micron fixed sections were cut and stained with hematoxylin and eosin (H&E). For immunohistochemical studies, specimens were deparaffinized with xylene, rehydrated with 70% ethanol, and treated with 0.1% trypsin for 10 min at 37°C. Sections were then incubated with monoclonal antibodies prepared against cytokeratin, PSA, or prostatic acid phosphatase (PAP) (Biogenex, Dublin, CA) . An avidin-biotin complex method was used with all specimens using fast red TR or AEC as chromogens (Biogenex). Slides were counterstained with aqueous hematoxylin and mounted with glycerol for visual
inspection and photography.
4. Determination of Serum PSA Values. Animals were killed by cardiac puncture under methoxyflurane anesthesia. Blood was allowed to clot at 37°C and centrifuged, and the serum was stored at -20°C. PSA values were determined using a dual reactive
enzymatic immunoassay kit with a lower limit of
sensitivity of 0.4 ng/ml (Hybritech Inc., San Diego, CA).
5. DNA Isolation and Southern Blot Analysis.
Tissue DNA was isolated from tumors as described by Davis (1986). DNA concentration was determined with a spectrophotometer. DNA specimens were applied to
Zetaprobe membranes (Bio-Rad) then baked at 80°C for 90 minutes prior to hybridization with a 32P-labeled human Alu repetitive sequences probe (Oncor, Gaithersburg, MD). 6. RNA Isolation and Northern Blot Analysis.
Total cellular RNA was prepared from frozen tissues by the 4 M guanidinium thiocyanate extraction method (Chomcjymski & Sacchi, 1987). Typical yields of total cellular RNA were about 300 μg/200 mg tissue as
quantified spectrophotometrically using 40 μg RNA/A260 unit. RNA was denatured in 50% formamide/18%
formaldehyde at 55°C and fractionated by electrophoresis in a 0.9% denaturing formaldehyde agarose gel. Samples were transferred onto a Zetaprobe membrane (Bio-Rad) by capillary method, and the membrane was then baked for 2 hours at 80°C. Following this, the membrane was
prehybridized in the presence of 1 M NaCl, 10% dextran sulfate, 1% SDS, and 200 μg/ml salmon sperm DNA for at least 2 hours at 65°C. Hybridization was carried out at 65°C overnight with a random-primer-labeled probe as indicated. Finally, the membrane was washed under high stringency conditions (0.5 x SSC, 1% SDS at 65°C).
Autoradiograms were prepared by exposing Kodak X-Omat AR film to the membrane at -80°C with intensifying screens.
7. Mitogenic Assays. To determine the mitogenic activity of androgens (testosterone and dihydrotestosterone, Sigma) and conditioned media prepared from various types of
fibroblasts on the growth of human LNCaP cells in vi tro, a 96 -well assay based on the uptake and elution of crystal violet dye by the cells in each well was employed
(Gillies et al., 1987; Kanamarus & Yoshida, 1989).
Various defined growth factors, including basic
fibroblast growth factor (bFGF), transforming growth factors alpha and beta (TGFα, TGF/S) and epidermal growth factor (EGF) (Collaborative Research) were also tested. Using 96 well plates, 3,000 LNCaP, 500 MS, or 200 rUGM cells were plated per well (Falcon) in T-medium containing 1% charcoal stripped CS and 2% TCM.
Twenty-four hours later, the cells were downshifted to serum-free condition (see above) with various
concentrations of androgens, growth factors, or
conditioned media. To avoid stripping poorly adherent LNCaP cells with each media change, media was partially removed by gentle suction and 100 μl of fresh media was added in 50 μl aliquots. The medium was changed every 2 days; 7-10 days later the cells were fixed in 1%
glutaraldehyde (Sigma), and stained with 0.5% crystal violet (Sigma). Plates were washed, air-dried, and the dye was eluted with 100 μl Sorensen's solution (9 mg trisodium citrate in 305 ml distilled H2O, 195 ml of 0.1 N HCl, and 500 ml 90% ethanol). The absorbance of each well was measured by a Titertek Multiskan TCC/340 (Flow Laboratories, McLean, VA) at 560 nm. Control studies demonstrated that absorbance is directly proportional to the number of cells in each well.
8. Androgen Receptor Assays.
Whole cell androgen receptor assays were performed as described previously by Guthrie et al. (Guthrie et al., 1990), with the following modifications. LNCaP cells were plated in T-medium plus 5% FBS in 6 well plates (Falcon) and downshifted to 0.4% charcoal-stripped calf serum 24 hours preceding the assay. Just prior to beginning the assay, this medium was removed and cells were washed twice with PBS/EDTA, and T-medium with various dilutions of 3H-R1881 (methyltrienolone 81.8 Ci/mmol, DuPont Co., Wilmington, DE) was added to
appropriate wells. In some wells, unlabeled R1881
(200-fold of [3H-R1881]) was added to determine the extent of nonspecific binding. Following a 90 minute- incubation at 37°C, the media was removed, cells were washed with ice cold PBS/EDTA, and 1 ml of 100% ethanol was added to each well. A 500 μl aliquot was added to a scintillation vial and counted with a scintillation counter (Beckman Instruments, Inc., Houston, TX).
Results
1. Effect of Co-inoculated Fibroblasts on LNCaP Tumor Growth.
The incidence of tumor formation in mice
co-inoculated with LNCaP cells and various types of fibroblasts was compared (Table I). The observation period for all injections was 3 months. LNCaP and all fibroblast cell lines were found to be nontumorigenic
(0/20) with injections of up to 5 x 106 or 2 x 106 cells, respectively. No significant sex differences in tumor formation were observed in hosts co-inoculated with LNCaP and rUGM cells, with an overall tumor incidence of 61% for males and 50% for females. The average latency period for measurable tumor growth was 42 days in male and 45 days in female hosts. No difference in tumor volume or latency period was observed by increasing the rUGM inoculum from 1 x 105 to 1 x 106 cells. Mean tumor volume was 322 ± 106 mm3. No sex differences in the incidence of tumor formation was observed in hosts coinoculated with LNCaP and 3T3 cells (67%, mean tumor volume 420 mm3). In contrast, marked sex differences in tumor induction were observed with co-inoculation of LNCaP and human bone (MS) or LNCaP and rat prostatic
(NbF-1) fibroblasts, as these tumors formed only in male hosts (62% and 17%, respectively). Mean tumor volume for LNCaP/MS and LNCaP/NbF1 tumors was 238 ± 74 mm3 and 72 ± 52 mm3, respectively. Lung CCD16 and NRK fibroblasts did not induce chimeric tumor growth in either sex. The histomorphology and relative content of LNCaP cells in the various fibroblast-induced tumors differed markedly, as characterized below.
TABLE 2
FIBROBLAST SPECIFICITY IN INDUCING HUMAN
PROSTATE CANCER GROWTH
Figure imgf000061_0001
a
All carcinomas with no sarcomatous component
In further studies of this kind, only nonirradiated human bone stromal (MS) cells were found to be active in promoting LNCaP tumor formation (Table 3). TABLE 3
Figure imgf000062_0001
* Incidence of tumor formation was recorded 32-54 days after inoculation
** The cells were irradiated with 40 Gy before co-inoculation with LNCaP Cells
2. Characterization of the Chimeric Tumors, Chimeric tumors were characterized
histomorphologically, immunohistochemically, and
biochemically. A difference in histomorphology of
LNCaP/rUGM chimeric tumors was noted between males and females: in males, 51% of tumors (or 31% of inoculation sites) were carcinosarcomas, with a predominantly epithelioid component separated by strips of mesenchymal cells (FIG. 1a), while 89% (16/18) of the tumors in females were pure sarcomas (FIG. 1b). MS bone
fibroblasts were found to be the most potent inducer of LNCaP tumor formation. All tumors were carcinomas composed of sheets of poorly differentiated epithelial cells with minimal mesenchymal cells and formed at 62% of inoculated sites in male hosts (FIG. 1c); no tumors formed in female hosts. NbF-1 cells were also capable of inducing LNCaP tumor growth in male hosts, but not as well as the MS or rUGM cells; three carcinomas formed from 18 inoculations (17%). LNCaP/3T3 tumors, however, were all sarcomas with no epithelial component. No tumors formed with co-inoculation of LNCaP with human lung CCD16 or NRK fibroblasts. The prostatic origin of the epithelial cells participating in the MS-, rUGM-, and NbF-induced tumor formation in male hosts was confirmed with
immunohistochemical staining procedures using monoclonal antibodies directed against PSA, PAP, and cytokeratin. The epithelial component of these tumors stained
intensely positive for PSA using fast red TR as the chromogen (FIG. Id; FIG. 1f) with no staining of the associated stromal component. The epithelial component of these tumors also stained positive for PAP and cytokeratin, but in an irregular and scattered manner compared to PSA. In contrast, sarcomas arising from LNCaP/rUGM inoculations in females and LNCaP/3T3
inoculations in both males and females stained negatively for PSA (FIG. 1e), PAP, and cytokeratin.
Biochemical characterization using Northern and Southern hybridization techniques corroborated the histologic findings to confirm the human prostatic origin of the epithelial component of the chimeric tumors
(FIG. 2). The LNCaP/rUGM tumors in male hosts contained a predominantly human component as manifested by the presence of Alu-sequences in 6 (2 weakly) of 7 tumors examined, compared to none in female tumors (FIG. 2a). PSA expression was more variable in these tumors and did not correlate consistently with the histomorphologic and Southern dot-blot analysis, likely because of different sampling from a heterogenous carcinosarcoma. All
LNCaP/MS tumors were strongly positive for PSA expression and human-specific Alu sequences on Northern and Southern analysis, respectively (FIG. 2b). None of the LNCaP/3T3 tumors that formed had any human prostate component
(FIG. 2b). 3 . Serum PSA Levels .
Sera from male and female mice bearing chimeric tumors were assayed for PSA using the Hybritech enzyme immunoassay. Four control males injected with human bladder transitional cell carcinoma cells (Stamey et al, 1987) had undetectable PSA levels, as anticipated, as PSA is a human prostate marker. Significant differences in median serum PSA values were observed among the different fibroblast-induced tumors as well as male and female hosts, paralleling differences in their histomorphology (FIG. 3). LNCaP/MS tumors were associated with
consistently elevated serum PSA levels ranging from 25.1 ng/ml to 323 ng/ml, with a median of 68.1 ng/ml (n = 6). Similarly, male hosts bearing LNCaP/NbF-1 tumors had elevated serum PSA (n = 4). However, nontumor-bearing. females with LNCaP/MS and LNCaP/NbF- 1 injections had undetectable serum PSA levels. Serum PSA values in males with LNCaP/rUGM tumors ranged from 0.4 to 348 ng/ml with a median of 16.1 ng/ml; 11 of 12 males had detectable levels and 3 had levels > 100 ng/ml. In all but one of the 8 females with LNCaP/rUGM tumors, serum PSA was undetectable. All animals with LNCaP/3T3 tumors, as well as those inoculated with LNCaP/CCD16 or LNCaP/NRK cells, had undetectable serum PSA levels.
4. LNCaP Androgen Sensitivity and Androgen Receptor
Content. To determine whether the LNCaP cell line was indeed androgen-sensitive, the in vi tro mitogenic effects of testosterone and DHT in serum-free and chemically-defined medium were evaluated. Peak responses were seen with 5 x 10-10 M testosterone and 1 x 10-10 M DHT, producing 62% and 43% increases, respectively, in cell number over 9 days when compared to controls grown in serum- and hormone-free media (FIG. 4a). Whole cell androgen receptor assays revealed the presence of a substantial number of high affinity androgen receptors (Kd = 0.23 nM; Bmax = 332 fmol/mg protein, FIG. 4b). 5. Effect of Defined Growth Factors on LNCaP Cells in vitro.
To identify possible mitogens involved in LNCaP cell growth, the dose-response relationship between LNCaP cells and bFGF, EGF, TGFα, and TGFβ was investigated.
Using concentrations ranging from 0.1 to 50 ng/ml, bFGF stimulated LNCaP cell growth 180% in a
concentration-dependent manner compared to cells grown in serum-free media alone (FIG. 5a). Minimal increases in cell number compared to controls were seen with EGF and TGFα over a wide range of concentrations. TGFβ, at 1 ng/ml, inhibited LNCaP cell growth by 70%. Time course studies also revealed that bFGF (50 ng/ml) stimulated LNCaP cell growth in a linear fashion during a 9-day observation period (FIG. 5b).
6. Effect of Fibroblast-Conditioned Medium on the
Growth of LNCaP Cells in vitro. To determine whether the in vivo fibroblast
specificity in inducing LNCaP growth could be explained by specific soluble growth factors produced by the fibroblasts, the mitogenic activity of conditioned media from MS, rUGM, NbF-1, 3T3, CCD16, and NRK cells on LNCaP growth in vi tro was compared. The conditioned media from MS, rUGM, and NbF-1 cells stimulated LNCaP cell growth up to 210% compared to controls (FIG. 6a), whereas 3T3, CCD16, and NRK conditioned media were ineffective. This paracrine effect was observed to be bidirectional, as LNCaP conditioned media stimulated rUGM cell growth up to 275% (FIG. 6b) and MS cell growth 225%. The
bidirectional paracrine stimulation between LNCaP and rUGM or MS cells in vi tro is dependent on the
concentration of conditioned media. No autocrine stimulatory effect was observed on exposing LNCaP, rUGM, or MS cells to their own conditioned media.
7. Effect of MS- and rUGM-Conditioned Media and bFGF on LNCaP Growth in vivo .
Since MS- and rUGM-conditioned media and bFGF stimulated LNCaP cell growth in vitro, possible
growth-promoting effects in vivo were examined following the coating of these growth factor onto a solid Gelfoam matrix. Control subcutaneous injections of Gelfoam with collagen IV plus ECGF with no co-inoculated LNCaP cells was found to induce local neovascularization at 3 wk
(FIG. 7b) illustrating that certain growth factors could maintain their biological activity when injected
subcutaneously with this technique. Co-inoculation of 2 x 106 LNCaP cells with Gelfoam adsorbed with collagen IV alone or with collagen IV and ECGF failed to induce
LNCaP tumor formation.
However, when 2 x 106 LNCaP cells were inoculated with Gelfoam plus collagen IV adsorbed with either bFGF (1μg/ml) or 10x concentrated conditioned media from rUGM or MS cells, LNCaP tumors formed at 60%, 50% and 38% of inoculated sites, respectively. Tumor latency, growth rate and size was similar, and did not differ from that of chimeric tumors induced by co-injecting LNCaP cells with rUGM or MS fibroblasts. Animals bearing LNCaP tumors had an elevated serum PSA (median 73 ng/ml) and the tumors were histologically carcinomas staining positive for PSA (FIG. 7c). The human prostatic origin of these tumors was confirmed with Southern dot-blot analysis for human Alu sequences and Northern analysis for PSA mRNA expression (FIG. 7d). EXAMPLE 2
Isolation and Characterization of
Growth-Promoting Factor (s) in the Conditioned Media of
Cultured Human Bone Stromal Cells
As shown in Example 1, section 7, accelerated LNCaP tumor growth still occurred in vivo when human bone stromal cells themselves were substituted by their conditioned media. Also, purified bFGF induced LNCaP tumor growth both in vi tro and in vivo. These
observations prompted further investigation of the properties of the conditioned media, and raised the possibility that bFGF itself may be the active component of the conditioned media.
The MS conditioned media was dialyzed prior to further purification and analysis. Firstly, a sample of conditioned media was subjected to affinity
chromatography using a heparin sepharose column. The sample was loaded onto the column in the low salt- containing buffer 10mM Tris/HCl, ImM PMSF, pH 7.4, to allow binding to the column, and the column was then washed with this buffer to remove any non-binding species. The components that bound to the column were then eluted using the above buffer containing an
increasing gradient of NaCl, from 0-3 M. Following assays of the eluted material, it was determined that the peak of the active component (s) responsible for LNCaP tumor growth in vivo corresponded to the 1 M NaCl eluted fraction (FIG. 8). This is distinct from bFGF, which is known to elute at > 2.0 M NaCl (Story et al., 1987). As can be clearly seen in FIG. 8, even the trailing edge of the activity peak eluted prior to exposure to 2 M NaCl. The SDS/PAGE profile of this partially purified heparin sepharose-eluted growth factor preparation was then determined and compared to the control media (TCM). Following silver stain analysis of SDS gels, several distinct polypeptide bands in the Mr range of 18 to 228 kDa were found to be present in this fraction, which were absent from the control (FIG. 9, track 3 vs. track 2).
The presence of a further novel 157 kD polypeptide within the active fractions was not initially detected, presumably as it was masked by an irrelevant and inactive polypeptide also present in the control media. Its presence was shown following the generation of an antigrowth factor mAb, MS 329, which reacted with a 157 kD protein present in the active fractions and absent from the control media (FIG. 11). The activity of this fraction in stimulating prostatic cell growth and soft agar colony formation, and in inducing in vivo LNCaP tumor growth was investigated and compared to that of other fractions. The soft agar colony formation assay is a standard in vi tro assay to test for transformed cells, as only such transformed cells can grow in soft agar. 0.6% (w/v) agar was placed into the bottom of each well on a 24 well plate, and each well was seeded with 2,000 NbE-1 cells. A feeder layer of 0.3 to 0.4% (w/v) agar, containing the potential growth factor substances to be analyzed, was then placed on top of the cells. The number of soft agar colonies formed was recorded 3 to 4 weeks after seeding. The active fractions (1 M eluates) from the column were found to be particularly active in both assays, whereas control media, the 2 M NaCl eluate, and similar fractions eluted by 1 M NaCl from 3T3 cell conditioned media, were found to be completely inactive (Table 4). TABLE 4
Figure imgf000069_0001
The properties of the partially purified heparin sepharose-eluted growth factor preparation were then further investigated. The mitogenic and tumor- forming activities were found to be trypsin and heat sensitive, but to be partly resistant to acid and reducing agent treatment (Table 5).
TABLE 5
Figure imgf000069_0002
* Defined by [3H] thymidine incorporation into cellular DNA The above results indicated that bFGF was not responsible for the activity of the bone derived
conditioned media. Further studies were conducted to confirm this using antibodies directed to purified growth factors. It was determined that the NbE-1 soft agar colony-forming efficiency of the active fraction could not be neutralized by antibodies to bFGF, KGF or HGF antibodies (FIG. 10). Moreover, immunoblotting of the active fraction with antibodies against bFGF, KGF, TGFβ1 , HGF, and EGF also failed to reveal any immunoreactive bands. These results together suggest that the above factors are probably not the endogenous growth factors in the conditioned media, and therefore, that certain unique growth factor (s) are largely responsible for such stimulatory activity.
It should be noted here, however, that the above results do not exclude the possible involvement of factors that may belong to one of the bFGF, KGF, TGFβ,
HGF, or EGF families. In a separate study, the inventors have also shown that bFGF, HGF, and nerve growth factor (NGF) have certain growth-promoting effects on prostate cancer cells.
Due to the presence of several high Mr protein species in the active fraction, western blot analyses of this fraction with antibodies raised against several (ECM) proteins, laminin, fibronectin, tenascin, and entactin were performed. The results demonstrated that this fraction reacted positively with fibronectin and tenascin, but not laminin and entactin antibodies. It is possible that the ECM proteins may act in concert with active growth factor (s), both of which may be necessary for inducing prostate cancer growth or progression.
In extending these analyses to two fresh bone marrow aspirate samples obtained from patients with prostate cancer (with confirmed bony metastasis) and lung cancer (without metastasis), it was found that fresh bone marrow aspirates from both patients contained similar tenascin antibody-reactive proteins to the conditioned media. However, a 110 kD (p110) protein was found to be present in the bone marrow aspirate of the prostate but not the lung cancer patient. This p110 could represent a tenascin proteolytic fragment. In addition to tenascin, fibronectin antibody also reacted selectively with some common proteins (banded at >228 kDa) present in both bone marrow samples and the conditioned media. The control media was found to be devoid of immunoreactivity with tenascin and fibronectin antibodies.
EXAMPLE 3
Further Characterization of Bone-Marrow Derived
Growth Factors This example demonstrates an approach which the inventors propose may be employed in the future
characterization of the growth factors. The preferred approach recommended by the inventors involves the initial preparation of antibodies against the growth factor polypeptides.
To further characterize the biochemical nature of these human bone-derived growth factors, monoclonal antibodies (mAbs) will first be raised against the constituent polypeptides. The inventors propose the partially-purified growth factor preparation as a starting material for this procedure for the following reasons. Firstly, the action of the conditioned media cannot be neutralized using a single commercially available antibody directed against any of the known growth factors. Secondly, the total number of bone stromal cell-associated proteins in the partially purified fractions is relatively small, and it will be possible to develop specific mAbs against all of these proteins. Most importantly, fresh bone marrow
supernatant fractions contain proteins similar to those of the conditioned media. It is proposed that such mAbs will have utility in a variety of different embodiments. They will be powerful tools for the further purification of the growth factors. From the data presented above, it seems likely that the interaction between the growth factors, the prostate cancer cells, and certain ECM proteins may be required for prostate cancer progression and acquired behaviors such as metastatic and androgen-independent properties. mAbs against such polypeptides are therefore potentially attractive diagnostic, prognostic, imaging, and
therapeutic agents for the treatment of prostate cancer in man. In that mAbs may be obtained which bind
specifically to the cancer cells, or to cancer-specific antigens in circulation, such mAbs would also be a powerful diagnostic agent.
The conditioned media of the MS culture will be fractionated to prepare the partially purified growth factors against which mAbs are to be generated. An aliquot of this material will be loaded onto a heparin sepharose affinity column previously equilibrated an appropriate buffer, such as Tris HCl, (pH 7.4). Proteins will be eluted from the column by a continuously
increasing NaCl gradient, and the concentration,
mitogenic activity, and soft agar colony-forming
efficiency of all fractions eluted from the column will be determined. The biologically active fractions will be pooled and concentrated by a suitable method, such as, for example, dialysis and lyophilization, or desalting using dry sephadex gels or sephadex gel exclusion column chromatography followed by lyophilization.
It is proposed that Balb/c mice of approximately 3 months in age will be immunized intraperitoneally (day 0) with 10 to 50 μg/mouse of the partially purified growth factors homogenized with Ribi mouse adjuvant system
(Ribi, 1985). The mice will then be given two consecutive weekly intraperitoneal injections of the antigens mixed with Ribi mouse adjuvant (day 7 and 14). Approximately one month after the third injection, booster inoculation of antigens alone will be given.
Here the inventors contemplate that the novel booster method described below will be advantageously employed. It is proposed that the immunized mice will be surgically opened to expose the spleen and a sterile solution of 5 to 20μg of the growth factor antigens will be injected directly into the spleen. The mouse will then be sutured and allowed to recover. It is believed that this method will allow the optimal exposure of the splenocytes to the booster antigen. Five to 7 days after the booster injection, a small amount of blood from the tail of the immunized mice will be bled and tested for the presence of circulating antibodies to the growth factors by an enzyme-linked immunosorbent assay (ELISA). Those mice producing reasonable titers of circulating antibodies to the partially purified antigens will be sacrificed and their spleens will be aseptically removed for cell fusion.
The mouse myeloma cell line proposed to be of use for hybridization is the 8-azaguanine-resistant mouse murine myeloma SP2/0 non-producer cell line. The SP2/0 cell line has been selected for 8-azaguanine resistance and does not survive in medium containing hypoxanthine, aminoprotein, and thymidine (HAT). The cells will be fused as described in (Chan et al., 1987). Immune splenocytes (108 cells) obtained from two hyperimmunized mice and 8-azaguanine-resistant SP2/0 mouse myeloma cells (107 cells) will be fused using 37% (v/v) polyethylene glycol 1500 (M.W. 500-600 M.A. Bioproducts, Inc.). Fused cells will be maintained for two days in growth medium that has been conditioned by SP2/0 cells, and then plated in five or six 96 -well microtiter plates in growth medium containing HAT (selection medium) and screened for antibody production at the end of 2 weeks by indirect ELISA. For the screening, purified growth factors, or partially purified growth-promoting factor (s) obtained from the conditioned media, or bone marrow supernatant fractions may be used as target antigens, and media plus NaCl may be used as a control. The target antigens (50 ng/50μl/well) will be immunobilized onto the bottoms of the 96-well microtiter plates by slow evaporation at 4°C overnight. The culture medium from the wells propagating the splenocyte-myeloma (hybridoma) cells growing in the selection medium will be assayed for secreted antibodies that react with the immobilized antigens (either bone marrow supernatant fractions, or bone stromal cell- conditioned media, or purified growth factors may be used). The isotypes of the immunoglobulin (s) produced by cloned hybridoma cell clones may also be determined by ELISA, employing a commercial isotyping kit. The specificity of the mAbs may be determined by their reactivity with various antigens, as examined by ELISA and confirmed by western blot analysis. After the mAbs are characterized, they may be produced in the form of mouse ascites fluid, purified and used to antagonize the soft agar colony forming
efficiency of NbE-1 cells which are stimulated by the partially purified growth factors. This assay is
proposed to be a reproducible, convenient and rapid assay method. Soft agar colony-forming efficiency is known to correlate directly with LNCaP tumorigenicity in vivo.
A mAb, termed MS 329, has been produced which has reactivity with a 157 kD growth factor polypeptide
(FIG. 11). Based on previous experience (Chi et al . , 1987;
Drewinko et al . , 1986; Zhang et al . , 1989), the inventors further propose that it will be possible to identify specific mAbs that may have diagnostic and prognostic values in predicting human prostate cancer metastasis to the bone, imaging the prostatic metastasis, and
inhibiting tumor-stromal interaction. The criteria to be used in assaying for such mAbs are proposed to include tests for, e.g., specific reaction with a defined protein band of conditioned media in immunoblots or in
immunohistochemical assays; and/or competition for the binding of the putative growth promoting factor (s) with the cell membrane fraction prepared from prostate cancer cell lines.
Once specific mAb(s) that meet the above criteria have been identified, the inventors contemplate their use in diagnosis, prognosis, imaging, and therapy. This approach is advantageous because, unlike any anti-PSA antibodies, the mAbs against cancer-specific antigens may not be trapped in the blood compartment and they would therefore more efficiently block prostate cancer and bone cellular interactions. In addition, the inventors propose that the levels of these growth factors may correlate positively with prostate cancer progression. To investigate this, it is proposed that bone marrow aspirates will be obtained initially from late stages of the untreated prostate cancer patients (Stage D1, D2) and prostate cancer patients treated with hormonal therapy, or failed
hormonal therapy, and chemotherapy. The concentration of growth factors in such samples may be analyzed by ELISA, or radioimmunoassay (RIA) and compared to the number of prostate cancer cells present in bone marrow. The inventors propose that the concentrations of growth factors will correlate with the proliferative potential and aggressiveness of the prostate tumor in vivo and inversely with patients' survival, and may also predict the length of period of remission and
disease-free survival. The concentration of these growth factors may also serve as a valuable index to predict cancer progression prior to the manifestation of clinical symptoms. It is believed that the ELISA or RIA assay contemplated by the inventors will be extremely
sensitive. Based on immunoblot analysis of the growth factors, the sensitivity of this assay is estimated to be in the ng range. This sensitivity of assay could be used effectively to diagnose prostate cancer, or to predict the progression of prostate cancer and its response to various therapies in very small volumes of bone marrow aspirates. Similarly, the assay will be refined as a diagnostic tool for the early detection of the onset of prostate cancer.
In further embodiments, it is proposed that the mAb(s) will have utility in radio-imaging protocols.
mAb(s) labeled with indium 111 (100) can be administered to mice previously inoculated with LNCaP and bone
fibroblasts for the development of LNCaP tumors. In this manner the tumor can be imaged, the sensitivity
determined, and the distribution of mAb-In 111 complex in this model of prostate cancer examined. mAb(s)
previously labeled with [131I] or mAb-immunotoxins such as mAb-ricin A chain (Pearson et al., 1990) could be
delivered through continuous infusion to mice which bear experimental LNCaP tumors and the outcome monitored.
The specific mAbs could also be employed in the rapid purification of the growth factor polypeptides following the creation of a mAb-affinity column. This could be achieved by conjugating a specific mAb to cyanogen bromide (CNBr)-activated sepharose CL4B
(Pharmacia) (Chan et al . , 1986; Li et al . , 1987). As such, the antibodies would first be attached to the CNBr- sepharose, and the antisera-bound matrix then poured into a column and washed with a suitable wash buffer. An aqueous mixture including the growth factor polypeptides could then passed over the column under conditions to allow for immunocomplex formation between components in the mixture and the sepharose-bound antibodies. The column would then be washed extensively to remove non- specifically bound material and the specifically-bound antigens eluted from the column in a substantially purified state. Such an affinity column could also be used to isolate and characterize growth-promoting component (s) from human bone marrow aspirates obtained from prostate cancer patients. In such embodiments, bone marrow aspirates (-10 ml per patient, at 20 to 30 mg protein/ml) could be obtained from prostate cancer patients, from female breast cancer patients (with or without bony metastasis), and from healthy normal male and female donors and analyzed. From such investigations, the sex-dependent differences and disease specificity of the growth factors that appear to promote human prostate tumor growth could be investigated.
EXAMPLE 4
Isolation and Characterization of a Bone and Prostate Stromal Cell-Derived Growth Factor Experimental procedures used in example 4.
Cells and Media
The human bone fibroblast cell line, MS, derived from an osteogenic sarcoma, was established by Dr.
A.Y.Wang (The University of Texas M.D.Anderson Cancer Center, Houston, TX). MS cells were maintained in T medium ( 80% DMEM, 20% F12K, 3 g/ml NaHCO3, 100 units/ml penicillin G, 100 μg/ml streptomycin, 5 μg/ml insulin, 13.6 pg/ml triiodothyronine, 5 μg/ml transferrin, 0.25 μg/ml biotin, and 25 μg/ml adenine) with 5% FBS; passages 29-33 were used. The rat prostate epithelial cell line, NbE-1, was established from a normal Noble rat ventral prostate gland using procedures previously described (Chung et al., 1989). PC-3 cells, human prostate
adenocarcinoma, derived from bone marrow metastases.
LNCaP cells, passage 29 of the original line were kindly supplied by Dr. G. Miller (University of Colorado,
Denver, CO). All cells were maintained in T medium with 5% FBS unless otherwise stated.
Construction of the Human MS cDNA Expression Library
Total cellular RNAs were extracted from MS cells using the RNAzol B method, a single-step purification protocol as described previously (Chomcyzynski and Sacchi 1987). The Poly (A) mRNA was purified by two cycles of oligo (dT) - cellulose column chromatography according to the manufacture's procedures ( Pharmacia LKB
Biotechnology). 5 μg of MS poly (A) mRNA was used toconstruct MS cDNA expression library in the λZAP II vector ( Stratagene). Double-strands cDNA primed with a oligo (dT) 12-18 was synthesized as described by the manufacture's protocols ( Pharmacia LKB Biotechnology). A EcoR1 adaptor with internal Not1 site was added to the cDNA, and ligated to the λZAPII/EcoR1 vector. The final expression library contained a total of 2 x 106 clones, with more than 95% of the clones containing the cDNA inserts.
Heparin Sepharose-Affinity Column Chromatography
Dialyzed bone fibroblast conditioned medium was applied to a heparin sepharose affinity column
(heparin-sepharose CL-6, Pharmacia LKB
Biotechnology, Piscataway,NJ), 1.0 x 9 cm , which was previously equilibrated in 10 mM Tris-HCl buffer
containing 0.1 mM PMSF, pH 7.5. The column was washed with 3-bed volume of 10 mM Tris-HCl buffer and eluted with a linear salt gradient of NaCl (0 to 3 M NaCl).
Two ml fractions were collected and dialyzed against distilled water containing 0.1 mM PMSF at 4°C. Protein concentrations were monitored by a spectrophotometer at 280 nM. Fifty ml of each fraction was used for the assessment of the stimulatory effect on the prostatic epithelial cells by soft agar colony forming assay.
Cloning of the BPGF-1
The MS cDNA expression library was screened with the polyclonal antibody against MS1 fraction. Screening of cDNA expression library was performed as described by the manufacture's protocol (Stratagene). The cDNA clones were sequenced by the standard dideoxy chain termination method using sequenase ( United States Biomedical). Two strands of the templates were sequenced using T7, T3, and internal primers generated from the sequence. Overlapping sequences were assembled into a contiguous sequence using the computer program MacVector®. Northern Blot analyses
Total RNA was prepared from variety of human tissues and cells as described above. 20 μg of total RNA was subjected to Northern Blot analysis by electrophoresis on 0.9% agarose formaldehyde and then transferred onto a Zetaprobe membrane. Membranes were baked at 80 °C for 2 hours, prehybridized in a hybridization buffer
(Amersham), and then hybridized with 32p random
primer-labeled cDNA containing entire insert of BPGF-1 (1 X 106 dpm/ml hybridization buffer). The membranes were incubated at 65°C overnight. After hybridization, the membranes were washed in 2 X SSC at room temperature for 30 min; then the membranes were washed under high
stringent conditions ( 0.1 X SSC, 1% SDS) at 65°C for 30 min. Autoradiography was performed using O-MAX films with the intensifying screen at -80°C.
Southern Blot Analyses
High-molecular-weight DNA was isolated using the procedure described before (Davis et al., 1987). The DNA was digested with restriction endonucleases overnight at 37°C and then fractionated by electrophoresis in a 0.8 % agarose gel containing 1 X TAN buffer (40 mM Tris-HCl, 18 mM NaCl, 20 mM sodium acetate, and 2 mM EDTA) . After alkaline denaturation, DNA was transferred onto a
Zetaprobe membrane (Bio-Rad). The membranes were baked for 2 hours at 80°C, Prehybridized in a hybridization buffer (Amersham) at 65°C, and then hybridized with 32P random primer-labeled cDNA containing entire insert of BPGF-1 overnight at the same temperature. After
hybridization, the membranes were washed in 2 X SSC at room temperature for 20 min, and then the membranes were washed twice under high stringent conditions (0.1 X SSC, 1% SDS) at 65°C for 30 min. Autoradiography was performed using O-MAX film with the intensifying screen at -80°C. Western Blot Analysis
Following SDS-PAGE ( 7.5% gel; Laemmli, 1970) and electrotransfer to nitrocellulose membrane, membranes were blocked with 5% powdered milk in TBS, 0.1% Tween 20 for 3 hours. Membranes then incubated with primary antibodies diluted in the blocking solution with 3% powder milk for 1 hour. After washing with TBS, 0.1% Tween 20, membranes were incubated in the blocking solution with 3% powdered milk for 1 hour with proper secondary antibodies (Horseradish peroxidase conjugated streptavidin). The protein was detected with ECL Western blotting reagents and exposed to Hyperfilm ECL (Amersham Life Science).
Generation of Anti-Peptide Antibodies
Three synthetic peptide (CSPLTGSTQGQGGPP,
CGTWKPPSTSSSPTSP, GPEASRPPKLHPG) corresponding to the BPGF-1 amino acid sequences were coupled to keyhole limpet hemocyanin and used to immunize mice. Antisera from these mice were used for Western blot analysis.
Transfection of PC-3 and COS-1 cells
Transfections were performed as previously described (Sambrook, et al., 1989). The entire open reading frame of the BPGF-1 was subcloned into mammalian expression vector pCDNAl/neo (Invetrogen) under control of the CMV promoter. 20 μg of DNA was used to transfect PC-3 and COS-1 cells, respectively.
Preparation of Conditioned Media from the Transfected cells for the Growth Assay
After 24 hour transfection, the cells were washed twice with PBS, and changed to serum-free T media containing 1% TCM ( a serum-free defined media
supplement, Celex Co., Minnetonka, MN). The conditioned media was collected after 48 hours, and filtered through a 0.2 μM filter and then dialyzed with a 10,000 molecular weight cut-off membrane (Spectrum Medical Industries, Inc., Los Angeles, CA) for 72 hours at 4°C against distilled water containing 0.01μM phenylmethylsulfonyl fluoride, water was changed every 24 hours. Samples were lyophilized and reconstituted to a 10-fold concentration with T medium, filtered, and diluted to the desired working concentration with T media containing 1% TCM.
For the growth assay, PC-3 and NbE-1 cells were seeded in 96-well plate with T medium containing 1% TCM and 2% FBS. These cells were then washed with PBS twice and the desired condition media were added. The media was changed every other day. Cell number will be determined by crystal violet assay (Gillies, et al., 1987). The cells were grown in 96-well plates for another 3, 5, 7 days prior to fixation in 1% glutaraldehyde. The fixed Cells will be stained using 0.5% (w/v) crystal violet. Sorenson's solution was added to hydrolyze the cells and release trapped dye. Quantitation was performed using a Titertek Multiscan 96-well plate reader at 560 nm.
Anchorage-independent Growth
NbE-1 Cells were trypsinized and washed in PBS, and plated at 2000 cells/well in 12-well plates in 0.4% agar in the conditioned medium, over a 1 ml layer of T-medium with 1% agar. The colonies were scored after grown 3 to 4 weeks. Regulation of BPGF Expression in LNCaP cells by Growth Factors
LNCaP cells were cultured in 65-mm tissue culture dishes with T medium containing 2% TCM and 2% FBS until 80% confluence was reached. These cells were washed with PBS twice and continuance cultured in serum-free T medium with 2% TCM. After 48 hours, fresh medium was added and some culture were supplement with variety of growth factors. The total cellular RNA was prepared 48 hours after treatment and subjected to Northern blot analysis.
Expression of BPGF-1 in Bacteria E. coli. The entire cDNA encoding BPGF-1 was ligated to inducible E. coli expression vector pTrcHis B
(Invitrogen). The recombinant DNA was then transformed into E.coli strain TOP 10 (Invitrogen). The fused protein was induced by IPTG (1 mM) and separated in SDS-PAGE and visualized by Western blot analysis using polyclonal antibody against MS-1 fraction.
Results In an effort to isolate bone stromal cell-derived growth factors, serum-free conditioned medium from human bone stromal cells was fractionated by heparin affinity chromatography. Bone stromal cell conditioned medium contains factors that were able to stimulate human prostate tumor growth both in vi tro and in vivo (Chung, et al., 1992), and that certain heparin-bound growth factors were implicated in both benign and malignant growth of human prostate cancer cells ( Gleave et al., 1991, Chung et al., 1992). Dialyzed conditioned medium from a human bone fibroblasts was applied to a heparin sepharose affinity column. Bound proteins were eluted with a continuous linear sodium chloride gradient from 0 to 3 M. The elution profile and distribution of mitogenic activity are shown in FIG. 8. Prostate tumor-inducing activity was eluted predominantly in the 1.0 M NaCl fraction of the bone fibroblast cell conditioned medium. Specificity of tumor-inducing activity was demonstrated in studies where similar fractions eluted at 2.0 M NaCl or identical fractions eluted from NIH 3T3 cell conditioned medium, or control serum-free TCM medium failed to exert prostate tumor-inducing activity as analyzed by both in vivo tumor growth and in vi tro soft agar colony formation (table 6).
TABLE 6
Figure imgf000084_0001
To further characterize the MS-1, a polyclonal antibody specifically against MS-1 proteins was raised. This polyclonal antibody was used as a reagent to clone a bone and prostate derived growth factor by screening a cDNA expression library from a human bone stromal cell line, MS. Screening of cDNA Library
A cDNA expression library was constructed using mRNA isolated from a human bone stromal cell line, MS. Total RNA was isolated from MS cells. The mRNA was isolated using oligo (dT)-cellulose chromatography and 5 μg of mRNA was used for the reverse transcription and the synthesis of cDNA using a cDNA synthesis system. EcoRI adapters were ligated to cDNAs, and a library was constructed in λZAPII using a Gigapack Gold packaging kit (Stratagene, CA). Approximately one million clones from the library were screened with the polyclonal antibody against the MS-1 fraction. Ten positive clones were identified that remained positive upon secondary and tertiary screening. The range of DNA inserts of the clones is 1.5 to 4.0 kb. Partial DNA sequencing was performed in all isolated clones and it was found that three of the cDNA clones shared a significant degree of homology. The clone (BPGF-1) containing the largest insert from the three highly related clones was about 3.2 kb, and this clone was chosen for further analysis.
Sequencing of BPGF-1 DNA sequence analysis was conducted using a
combination of a controlled unidirectional Erase-a-base deletion system using exonuclease III, S1 nuclease and synthetic oligonucleotide primers. Templates were
sequenced from both strands by the dideoxynucleotide chain-termination method using sequenase. The BPGF-1 cDNA comprised 3171 nucleotides ( GenBank accession number will be obtained upon submission for publication) with a single, large open reading frame of 1620 nucleotides (SEQ ID NO:1). The BPGF-1 gene map is presented in FIG. 12. The predicted BPGF-1 protein is 59-kD composed of 540 amino acids before post-translational modification. The BPGF-1 contains two potential N-linked glycosylation sites. A pI of 9 for the mature peptide is predicted from the cDNA sequence, ignoring any possible secondary ionic effects, such as contributions by the carbohydrate component. The 3'UTR extended for an additional 858 bases, terminating with a poly (A) tail. A conventional polyadenylation consensus sequence (AATAAA) was found 16 bases upstream of the poly (A) tail. The BPGF-1 sequences were found to be unique in a search of the nucleic acid and protein databases (GenBank), and they were not closely related to any known sequences.
Differential Expression of BPGF-1
To analyze the BPGF-1 gene mRNA distribution and size, Northern blot analysis was performed on a variety of human tissues and cells. Two predominantly mRNA transcripts, 3.3 and 2.5 kb, with approximately equal intensity were found in human bone and prostate stromal cells (FIG. 14). In other human or rodent tissues or cell lines, BPGF-1 was not expressed (Table 7).
Quantitatively, it appears that the amount of BPGF-1 specific transcripts was substantially higher in bone than in prostate (>50 :1). Human prostate fibroblasts derived from the transitional and peripheral zones were examined, and the results showed that BPGF-1 was highly expressed in the transitional zone but weakly expressed in the peripheral zone.
Figure imgf000087_0001
Southern blot analysis was performed on a human prostate cell line to determine the size of the gene. Hybridization of BPGF-1 cDNA to human genomic DNA
detected a single 15 kb BamHI fragment. Three hybridizing fragments were detected in Hindlll-digested DNA. Four hybridizing fragments were detected in EcoRI -digested DNA (FIG. 15). The cDNA contains no BamHI site, one EcoRI site, and two HindiII sites. These data suggest that there is one single BPGF-1 gene. So, most likely two transcripts observed by Northern blot analyses may result from this gene by differential transcription
initiation/polyadenylation or processing. Regulation of BPGF-1 Expression by Growth Factors
It has been reported that growth factors can
stimulate prostate cancer growth. Studies were performed to determine whether BPGF-1 gene expression could be modulated by growth factors. Northern blot analysis was performed and found that PDGF, EGF, HGF, KGF, and TGF-β could increase BPGF-1 gene expression in human prostate cancer cell line (LNCaP). However, DHT, a classical prostate mitogen, was failed to induce BPGF-1 gene expression (FIG. 16).
Expression of BPGF-1 in E. coli.
To confirm that if the isolated cDNA clone contains the complete BPGF-1 coding sequence, rabbit anti-MS1 antibodies were used to compare the size of the
bacterially produced BPGF-1 with the size predicted by the cDNA sequence of BPGF-1. Cell extracts were separated on SDS-polyacrylamide gels and identified by Western blotting with anti-MS1 rabbit serum. A prominent band of about 89 kd is visible in the cell extract which is bigger than the size predicted by the cDNA (FIG. 17), because about 234 amino-terminal amino acids were
included from BPGF-1 prior to clone it into the
expression vector pTrcHis B, plus 3 kd protein from vector fused to the product, thereby adding the size of the protein to 89 kd. This is in agreement with the 59 kd size predicted by the cDNA. These results indicate that the cDNA clone BPGF-1 encodes a full-length BPGF-1 protein, even though the size of the cDNA (3171 bp) is slightly smaller than the mRNA size (3.3 kb).
Anti-Peptide Antibody to Detect the Expression of BPGF-1 Protein by Western Blot.
The inventors have chemically synthesized 3 peptides that represent the internal amino acid sequences of the cloned BPGF-1 cDNA. It has been shown that one of such polyclonal antibody obtained from the immunized mice recognized a protein band with an apparent molecular weight of 70 KDa (FIG. 18). This protein could represent the product of BPGF-1.
EXAMPLE 5
Demonstration of BPGF-1 Function as a Potential Growth Stimulatory Factor to Prostatic Epithelial Cells
To determine whether the BPGF-1 has any biological activity in stimulating rat and human prostate cell growth, a mammalian cell expression vector encoding an entire open reading frame of BPGF-1 was constructed and expressed in COS-1 cells. Conditioned medium from
transfected COS-1 cells was collected and the activity was measured by whether the conditioned medium could support the growth of rat and human prostatic carcinoma cells. As shown in FIG. 13a and FIG. 13b, the
conditioned medium from transfected COS-1 cells contains potent stimulator for PC-3 and NbE-1 cell growth, while, transfection of COS-1 cells with vector alone yielded conditioned medium incapable of supporting PC-3 and NbE-1 cell growth. Moreover, it was observed that transfecting the expression vector of BPGF-1 to PC-3 cells resulted in an enhanced rate of cell growth and altered cell morphology, suggesting that BPGF-1 may serve both as a mitogen and a morphogen.
Therefore, the methods and compositions of the instant invention are useful for the growth and
maintenance of prostatic carcinoma cells in culture, and further may be used in methods to assay the ability of selected cell or tissue types to undergo stimulation by BPGF-1. * * *
While the compositions and methods of this invention have been described in terms of preferred embodiments, it will be apparent to those of skill in the art that variations may be applied to the composition, methods and in the steps or in the sequence of steps of the method described herein without departing from the concept, spirit and scope of the invention. More specifically, it will be apparent that certain agents which are both chemically and physiologically related may be substituted for the agents described herein while the same or similar results would be achieved. All such similar substitutes and modifications apparent to those skilled in the art are deemed to be within the spirit, scope and concept of the invention as defined by the appended claims.
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Claims

CLAIMS :
1. A DNA segment comprising a sequence region
consisting of a BPGF-1 coding region.
2. The DNA segment according to claim 1, wherein the segment comprising the coding region codes for human BPGF-I.
3. The DNA segment of claim 2, wherein the human BPGF-1 includes an amino acid sequence essentially as set forth in SEQ ID NO : 2.
4. The DNA segment according to claim 1 further defined as being a cDNA sequence which is complementary to human BPGF-I.
5. The DNA segment of claim 3, comprising a BPGF-1 gene that includes a nucleic acid sequence essentially as set forth by a contiguous sequence from the sequence between position 694 and position 2314 of SEQ ID N0:1.
6. The DNA segment of claim 1, wherein the BPGF-1 coding region is positioned under the control of a promoter.
7. The DNA segment of claim 6, further defined as a recombinant promoter.
8. A nucleic acid segment that comprises at least a 10 nucleotide long contiguous stretch that corresponds to a contiguous nucleic acid sequence of SEQ ID NO:1.
9. The nucleic acid segment of claim 8, further defined as comprising at least a 20 nucleotide long contiguous stretch that corresponds to a contiguous nucleic acid sequence of SEQ ID NO:1.
10. The nucleic acid segment of claim 9, further defined as comprising at least a 30 nucleotide long contiguous stretch that corresponds to a nucleic acid sequence of SEQ ID NO:1.
11. The nucleic acid segment of claim 10, further defined as comprising at least a 50 nucleotide long contiguous stretch that corresponds to a nucleic acid sequence of SEQ ID NO : 1.
12. The nucleic acid segment of claim 11, further defined as comprising at least a 100 nucleotide long contiguous stretch that corresponds to a nucleic acid sequence of SEQ ID NO:1.
13. The nucleic acid segment of claim 8, further defined as a segment of up to 10,000 nucleotides.
14. The nucleic acid segment of claim 13, further defined as a segment of up to 5000 nucleotides.
15. The nucleic acid segment of claim 14, further defined as a segment of up to 2000 nucleotides.
16. The nucleic acid segment of claim 15, further defined as a segment of up to 50 nucleotides.
17. The DNA segment of claim 1, further defined as a vector.
18. The DNA segment of claim 17, wherein the vector is a recombinant vector.
19. The DNA segment of claim 18, 24, wherein the recombinant vector is adapted for transfer in a
eukaryotic host.
20. The DNA segment of claim 18, 24, wherein the
recombinant vector is adapted for transfer in a
eukaryotic host.
21. A recombinant host cell comprising a DNA segment that encodes the isolated BPGF-1 of claim 1.
22. The recombinant host cell of claim 21, further defined as a bacterial host cell.
23. The recombinant host cell of claim 22, wherein the bacterial host cell is E. coli .
24. The recombinant host cell of claim 21, wherein the DNA segment is introduced into the cell by means of a recombinant vector.
25. The recombinant host cell of claim 18, 24, wherein the host cell expresses the DNA segment to produce the encoded protein or peptide.
26. The recombinant host cell of claim 25, wherein the expressed protein or peptide includes an amino acid sequence essentially as set forth by a contiguous sequence from SEQ ID NO: 2.
27. A method of using a DNA segment that includes an isolated bone and prostate derived growth factor, comprising: preparing a recombinant vector in which a bone and prostate derived growth factor-encoding DNA segment is positioned under the control of a promoter; introducing the recombinant vector into a
recombinant host cell; culturing the recombinant host cell under conditions effective to allow expression of an encoded bone and prostate derived growth factor protein or peptide; and ccllecting the expressed bone and prostate derived growth factor protein or peptide.
28. A method of providing human bone and prostate derived growth factor comprising: providing a recombinant host bearing a recombinant DNA segment encoding a human bone and prostate derived growth factor and capable of expressing the factor; culturing the recombinant host under conditions
appropriate for the production of human bone and prostate derived growth factor; and separating the human bone and prostate derived
growth factor from the recombinant host.
29. A protein or peptide composition, free from total bacterial cells, comprising a purified bone and prostate derived growth factor protein or peptide that includes an amino acid sequence essentially as set forth by a contiguous sequence from SEQ ID NO: 2.
30. The composition of claim 29, comprising a peptide that includes a sequence in accordance with a 15 to about 50 amino acid long sequence from SEQ ID NO: 2.
31. The composition of claim 30, comprising a bone and prostate derived growth factor essentially as set forth in SEQ ID NO: 2.
32. The composition of claim 29, prepared by the method of claim 28.
33. The composition of claim 29, wherein the protein or peptide is a recombinant protein or peptide.
34. An antibody having binding affinity for a factor having the ability to stimulate the growth of prostate cells.
35. A purified antibody that binds to a bone and prostate derived growth factor protein or peptide.
36. The antibody of claim 35, wherein the antibody is linked to a detectable label.
37. The antibody of claim 36, wherein the antibody is linked to a radioactive label, a flurogenic label, a nuclear magnetic spin resonance label, .biotin, or an enzyme that generates a colored product upon contact with a chromogenic substrate.
38. The antibody of claim 37, wherein the antibody is linked to an alkaline phosphatase, hydrogen peroxidase or glucose oxidase enzyme.
39. A method for detecting the presence of bone and prostate derived growth factors in a clinical sample, comprising: obtaining a clinical sample suspected of containing bone and prostate derived growth factors; contacting the sample with a first bone and prostate cell derived growth factor or a first antibody that binds to bone and prostate cell derived growth factors under conditions effective to allow the formation of immune complexes; and detecting the immune complexes formed.
40. The method of claim 39, wherein the first antibody is to the synthetic peptides as set forth in SEQ ID NO : 3, SEQ ID NO: 4, or SEQ ID NO : 5.
41. The method of claim 39, wherein the first protein, peptide or antibody is linked to a detectable label and the immune complexes are detected by detecting the presence of the label.
42. The method of claim 39, wherein the immune complexes are detected by means of a second antibody linked to a detectable label, the second antibody having binding affinity for the first protein, peptide, or antibody.
43. An immunodetection kit comprising, in suitable containers, a bone and prostate derived growth factor protein or peptide, or a first antibody that binds to a bone and prostate derived growth factor protein or peptide, and an immunodetection reagent.
44. The immunodetection kit of claim 43, wherein the immunodetection reagent is a detectable label that is linked to the protein, peptide or the first antibody.
45. The immunodetection kit of claim 43, wherein the immunodetection reagent is a detectable label that is linked to a second antibody that has binding affinity for the protein, peptide, or the first antibody.
46. A method of generating an immune response,
comprising administering to an animal a pharmaceutical composition comprising an immunologically effective amount of a bone and prostate derived growth factor composition.
47. The method of claim 46, wherein the composition comprises an immunologically effective amount of a bone and prostate derived growth factor nucleic acid
composition.
48. The method of claim 47, wherein the nucleic acid composition comprises an antisense molecule
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