US8238634B1 - Efficient off-resonance correction method and system for spiral imaging with improved accuracy - Google Patents
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- 238000003384 imaging method Methods 0.000 title claims abstract description 29
- 238000013459 approach Methods 0.000 claims description 4
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- G01R—MEASURING ELECTRIC VARIABLES; MEASURING MAGNETIC VARIABLES
- G01R33/00—Arrangements or instruments for measuring magnetic variables
- G01R33/20—Arrangements or instruments for measuring magnetic variables involving magnetic resonance
- G01R33/44—Arrangements or instruments for measuring magnetic variables involving magnetic resonance using nuclear magnetic resonance [NMR]
- G01R33/48—NMR imaging systems
- G01R33/4818—MR characterised by data acquisition along a specific k-space trajectory or by the temporal order of k-space coverage, e.g. centric or segmented coverage of k-space
- G01R33/4824—MR characterised by data acquisition along a specific k-space trajectory or by the temporal order of k-space coverage, e.g. centric or segmented coverage of k-space using a non-Cartesian trajectory
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- G—PHYSICS
- G01—MEASURING; TESTING
- G01R—MEASURING ELECTRIC VARIABLES; MEASURING MAGNETIC VARIABLES
- G01R33/00—Arrangements or instruments for measuring magnetic variables
- G01R33/20—Arrangements or instruments for measuring magnetic variables involving magnetic resonance
- G01R33/24—Arrangements or instruments for measuring magnetic variables involving magnetic resonance for measuring direction or magnitude of magnetic fields or magnetic flux
- G01R33/243—Spatial mapping of the polarizing magnetic field
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- G—PHYSICS
- G01—MEASURING; TESTING
- G01R—MEASURING ELECTRIC VARIABLES; MEASURING MAGNETIC VARIABLES
- G01R33/00—Arrangements or instruments for measuring magnetic variables
- G01R33/20—Arrangements or instruments for measuring magnetic variables involving magnetic resonance
- G01R33/44—Arrangements or instruments for measuring magnetic variables involving magnetic resonance using nuclear magnetic resonance [NMR]
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- G01R33/54—Signal processing systems, e.g. using pulse sequences ; Generation or control of pulse sequences; Operator console
- G01R33/56—Image enhancement or correction, e.g. subtraction or averaging techniques, e.g. improvement of signal-to-noise ratio and resolution
- G01R33/565—Correction of image distortions, e.g. due to magnetic field inhomogeneities
- G01R33/56563—Correction of image distortions, e.g. due to magnetic field inhomogeneities caused by a distortion of the main magnetic field B0, e.g. temporal variation of the magnitude or spatial inhomogeneity of B0
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- the present invention is directed to imaging using a spiral scan and more particularly to such imaging that provides rapid and accurate off-resonance correction.
- Spiral scanning is extensively used in magnetic resonance (MR) imaging and has a number of desirable properties, such as short scan time, resistance to motion artifacts, capability to achieve short echo time, and excellent gradient efficiency.
- One major limitation, however, is image blurring due to off-resonance effects from main field inhomogeneity and tissue-induced susceptibility variations. This problem is more pronounced with long readout times and at high field strength.
- the linear off-resonance correction method is a widely used method that requires little computation and is robust at low signal-noise ratio (SNR) regions.
- SNR signal-noise ratio
- Image domain deconvolution approximates the off-resonance phase as a separable quadratic function, which allows image deblurring to be carried out as rapid one-dimensional deconvolutions.
- a drawback of this method is that it can become ineffective when the deviation of the off-resonance phase from the quadratic function cannot be ignored.
- Conjugate phase reconstruction is an effective but computationally expensive off-resonance correction method.
- Automatic off-resonance correction methods are alternative image deblurring methods for non-Cartesian imaging. These methods can estimate a field map from the imaging data set itself and therefore perform off-resonance correction without acquiring a field map.
- Noll et al Noll D C, Pauly J M, Meyer C H, Nishimura D G, Macovski A. Deblurring for Non-2DFT MRI. Magn Reson Med 1992; 25: 319-333; see also U.S. Pat. No. 5,311,132) first proposed an automatic correction method that determines a field map by minimizing an objective function that corresponds to the imaginary components of the image.
- Noll's method is prone to estimation errors when the target field map resolution is high, causing image artifacts in certain cases.
- Man et al (Man L C, Pauly J M, Macovski A. Improved automatic off-resonance correction without a field map in spiral imaging Magn Reson Med 1997; 37: 906-913) proposed to perform Noll's automatic correction method in two stages: first to estimate a low resolution field map and then to estimate a high resolution field map based on the searching frequency constraint from the low resolution field map.
- a modified version of this two-stage method is to first estimate a linear map using a fast automatic method and then employ it as a frequency constraint for a second stage automatic off-resonance correction.
- a common problem for all of these automatic methods is that they are computationally inefficient, which can become impractical when processing a large volume data set.
- the present invention is directed to a new off-resonance correction algorithm and related method and system for spiral imaging.
- the present invention is similar to the previously reported two-stage automatic off-resonance correction method, but has some major differences.
- the first stage we acquire a low resolution map using two single shot spirals instead of estimating it using an automatic method. This modification saves computation, and avoids potential estimation errors that can occur when using an automatic method with inappropriate parameters.
- the second stage we developed a modified version of automatic off-resonance correction with a frequency constraint from the first stage map.
- the second stage automatic deblurring is more computationally efficient than previous automatic methods and is insensitive to the variation of parameters required in an automatic method. Phantom and volunteer experiments show that the proposed method can provide improved off-resonance correction for spiral imaging compared to the existing map based off-resonance correction methods.
- the present invention provides improved off-resonance correction in spiral imaging.
- a low resolution field map is acquired by two single shot spirals and a computationally efficient automatic method is performed for off-resonance correction with a frequency constraint from the acquired low resolution field map.
- Two different strategies to implement this frequency constraint a linear map constraint and a polynomial map constraint, were investigated.
- our experiments indicate that the proposed method can provide off-resonance correction with improved accuracy in spiral imaging.
- the present invention provides an efficient off-resonance correction method and related system for spiral imaging with improved accuracy. We use two single shot spirals to collect a low resolution field map and then perform a computationally efficient automatic method for off-resonance correction with a frequency constraint from the acquired low resolution field map.
- the present invention can be used for online reconstruction and can provide more accurate off-resonance correction in spiral imaging than field map based off-resonance correction methods.
- FIGS. 1A-1C show different computational strategies employed to perform automatic off-resonance correction with the searching frequency constrained by a first stage field map
- FIGS. 2A-2D show phantom images acquired using a spiral scan and reconstructed with different off-resonance correction methods
- FIGS. 3A-3H show head images of a normal volunteer acquired using a spiral scan, in which tagging lines were created to make the off-resonance effect more prominent;
- FIGS. 4A-4D show coronary images of a normal volunteer acquired using a spiral spin-echo sequence. a) is an image without off-resonance correction; and
- FIG. 5 is a schematic diagram showing a system on which the preferred embodiment can be implemented.
- ⁇ (r) is the spatial distribution of the off-resonance
- conjugate phase reconstruction is an effective way to remove the image blurring induced by the off-resonance effects in non-Cartesian imaging.
- W(t) is the density compensation accounting for the non-uniform sampling in the k-space for non-Cartesian data acquisition.
- ⁇ (r) is the density compensation accounting for the non-uniform sampling in the k-space for non-Cartesian data acquisition.
- m(r; ⁇ i ) represents the complex image reconstructed at frequency ⁇ i .
- Eq. [3] can be performed by a fast image reconstruction method, such as gridding.
- an objective function is then calculated pixel by pixel for automatic evaluation of the field map.
- the objective function is typically chosen as the sum of the absolute value of the imaginary image raised to a certain power within a summation window around the point of interest.
- the local off-resonance frequency is chosen as the constant frequency which minimizes the objective function calculated at that location.
- the final deblurred image can be either formed by piecing up the pixels from the complex images or reconstructed using a fast conjugate phase reconstruction method with a smoothed version of the estimated field map.
- the automatic method can be better understood by the concept of the point spread function (PSF).
- PSF point spread function
- m true (r′) is the real-valued physical image
- r′; ⁇ i ) is the PSF evaluated at location r given that the input impulse is at location r′ and the demodulation frequency is ⁇ i .
- Eq. [4] indicates that the complex images m(r; ⁇ i ) can be represented as the sum of product of the physical image and the PSFs with the location of input impulse varying throughout FOV.
- the demodulation frequency ⁇ i is tuned away from the exact off-resonance frequency at the point of interest, the PSFs at the point of interest and also at the neighboring locations will spread out and have both real and imaginary energy, which results in the image value at the point of interest calculated from Eq. [4] becoming complex. Consequently, the criterion that the complex image m(r; ⁇ i ) should have minimal imaginary energy can be employed to determine whether or not the demodulation frequency Act), is close to the actual off-resonance frequency.
- the imaginary energy of the PSFs can decrease if the demodulation frequency is tuned far away from the actual off-resonance frequency, which can induce spurious minima in the objective function in automatic methods.
- Increasing the size of the summation window used for objective function calculation may reduce the possibility of encountering spurious minima; however, an increased size of the summation window may also decrease the accuracy of the estimated field map.
- Man et al proposed performing automatic off-resonance correction in two stages. The first stage is to use a large summation window to estimate a low resolution field map using an automatic method.
- the second stage is to use a small summation window to estimate a high resolution field map with the searching frequency constrained by the low resolution field map.
- the algorithm according to the preferred embodiment is compared to previously described two-stage automatic off-resonance correction methods but has some important differences.
- a low resolution field map or a linear map is estimated by the automatic method itself.
- a problem associated with these methods is that an inappropriate choice of a parameter value required in automatic method, such as the amount of incidental phase to be removed, can lead to estimation error in the first stage map.
- a low resolution field map can also be acquired efficiently by collecting two single shot spirals with different echo times during the approach to steady state. In the present algorithm, we employ this method to acquire a low resolution field map. This strategy saves computation time and the accuracy of acquired low resolution map is sufficient to provide a frequency constraint for the second stage automatic deblurring.
- the second stage we perform pixelwise automatic off-resonance correction with searching frequencies constrained by the first stage map.
- the constraint from the first stage map allows us to use a small summation window in the second stage automatic deblurring to achieve high resolution off-resonance correction.
- W′(t) is the density compensation function after considering the gradient of field inhomogeneity
- the previous automatic methods search for the actual off-resonance frequency directly. This modification can significantly improve the computational efficiency of our algorithm, which will be discussed in more detail below.
- H(r) and ⁇ represent the summation window and a constant power, respectively.
- a small summation window can be used here to achieve high resolution off-resonance correction because the possibility of encountering a spurious minimum of objective function is reduced with the frequency constraint from the acquired linear map.
- the PSFs in Eq. [4] can be skewed, which may reduce the effectiveness of automatic methods.
- One advantage of the present method is that this effect is inherently corrected in Eq. [5].
- the proposed method also allows us to use a recursive method to calculate the objective function, which is impossible to implement in the previous two-stage automatic methods.
- the objective function can be calculated as described by Eq. [6] and the deviation of the actual off-resonance frequency from the first stage polynomial map can be determined as described in Eq. [7].
- the objective function calculation can also be performed using the recursive method described in the inventors' previous paper cited above to improve the computational efficiency.
- Multifrequency interpolation requires reconstructing a series of base images at different demodulation frequencies.
- a strategy we employed is to use Delaunay triangulation to generate a sampling time mask on Cartesian grids and then to perform demodulation directly on the k-space data after gridding.
- the sampling time on the corners of Cartesian grids is set as total readout time.
- the time mask can be calculated offline and loaded during online reconstruction for a given k-space trajectory.
- the time mask needs to be calculated online since the k-space trajectory is warped by the linear gradient.
- the incidental phase caused by sources other than off-resonance effects must be removed when performing automatic off-resonance correction.
- a benign property of the present off-resonance correction method is that the second stage automatic deblurring is insensitive to variations of parameters used to determine the amount of incidental phase to be removed.
- the incidental phase should be estimated from the demodulated signal s′(t) rather than the raw signal s(t).
- FIGS. 1A-1C demonstrate the computational advantage of the present strategy.
- FIG. 1A illustrates the computational strategy employed in previous two-stage automatic methods. Under this computational strategy, different points have a different set of searching frequencies given a spatially varying first stage map. Point A, B, and C in FIGS.
- FIG. 1A-1C represent three arbitrary points within the FOV.
- the dashed lines and solid lines in FIG. 1A represent the searching frequencies at point A and C, respectively.
- the image value at point B must be calculated at different constant frequencies accordingly. This results in the redundant calculation of image values at many frequencies.
- FIG. 1B shows an alternative computational strategy for two-stage automatic off-resonance correction that was employed in Lee D, Nayak K S, Pauly J M. Reducing spurious minima in automatic off-resonance correction for spiral imaging, in Proc., Intl. Soc. Mag. Reson. Med. 2004; 2678, where a series of images are calculated at constant frequencies within the searching range of off-resonance frequencies.
- FIG. 1C illustrates the computational strategy according to the preferred embodiment.
- the automatic method is used to search for the deviation of the actual off-resonance frequency map from the first stage map, and only a few images need to be calculated throughout the FOV due to the small searching range.
- the computational strategies described in FIGS. 1A-1C will have the same computational cost.
- the third strategy we used to improve the computational efficiency is to employ a recursive method to calculate the objective function, which is impossible to implement with the computational strategy of FIG. 1A or 1 B given a spatially-varying first stage map.
- the idea of calculating the objective function recursively is simple, but it is more efficient than calculating the objective function directly.
- the hardware 500 can include a scanner 502 , a processor 504 , and a display or other output 506 .
- the processor can include an input for previously collected raw data.
- ICE Siemens Image Calculation Environment
- ICE Siemens Image Calculation Environment
- the size of summation window was 12 ⁇ 12; the power a of the objective function was 1; the first 1.2 ms of the readout was used to estimate the incidental phase (14); the searching range of the deviation of the actual map from the first stage map was from ⁇ 50 Hz to 50 Hz; and the increment of searching frequencies was 10 Hz.
- the images were overall less blurry after applying linear off-resonance correction.
- residual image blurring remained in many data sets.
- image blurring was exaggerated in local regions after applying linear off-resonance correction indicating strong non-linearity of the field inhomogeneity in theses regions.
- Multifrequency interpolation based on an extra acquired field map can provide high quality off-resonance correction for some of the data sets.
- residual image blurring remained after off-resonance correction using mutlifrequency interpolation based on either low resolution or high resolution field map, indicating the inaccuracy of the acquired field maps in local regions.
- the proposed off-resonance correction method was the most robust among these methods in providing high quality off-resonance correction.
- the linear map constrained automatic method was employed in most of our in vivo applications.
- the polynomial map constrained automatic method was found to provide more accurate off-resonance correction than the linear map constrained automatic method in certain applications, particularly phantom studies, due to strong non-linear field inhomogeneity.
- FIGS. 2A-2D show the results of a spiral gradient-echo scan of a phantom acquired on a Siemens Avanto 1.5T scanner. The field of view was 28 cm 2 , slice thickness was 5 mm, and TE was 5 ms.
- FIG. 2A is the image without off-resonance correction.
- FIG. 2B is the image after linear off-resonance correction. Note that the linear off-resonance correction provided little image deblurring for this phantom data set due to the strong non-linear inhomogeneity.
- FIG. 2C is the image after off-resonance correction using multifrequency interpolation, which was performed using an acquired high resolution field map. Note that image blurring remains in some regions.
- FIG. 2D is the image after off-resonance correction using the proposed method with a polynomial map as the first stage map. Note that most of the image blurring artifacts are removed in FIG. 2D .
- FIGS. 3A-3H show the results of a spiral gradient echo head scan of a normal volunteer on a Siemens Avanto 1.5T scanner.
- a head coil with 4 channels was used to collect the data.
- Tagging RF pulses were applied to create tag lines on the image to make off-resonance effects more prominent.
- the field of view was 28 cm 2 , slice thickness was 5 mm, and TE was 5 ms.
- FIGS. 3A and 3E are images without off-resonance correction.
- FIGS. 3B and 3F are images after linear off-resonance correction. Note that image blurring is reduced in most regions but slightly increased in the lower part of the image after linear off-resonance correction.
- FIGS. 3C and 3G are images after off-resonance correction using multifrequency interpolation.
- FIGS. 3D and 3H are images after off-resonance correction using the proposed method with a linear map as the first stage map. Note that most image blurring artifacts are removed after applying the proposed off-resonance correction method.
- FIGS. 4A-4D show the results on a gated, breath-held, spiral spin-echo scan of the left coronary arteries of a normal volunteer acquired on a Siemens Sonata 1.5T scanner.
- the field of view was 28 cm 2
- the slice thickness was 7 mm
- the TE was 10 ms.
- FIGS. 4A , 4 B, and 4 C are images without off-resonance correction, with linear off-resonance correction, and with off-resonance correction using multifrequency interpolation, respectively. Only a low resolution field map was acquired for this data set for multifrequency interpolation due to limited scan time. Note that image blurring remains after off-resonance correction using both linear correction and multifrequency interpolation.
- FIG. 4D is the image after off-resonance correction using the proposed method with a linear map as the first stage map. Most image blurring artifacts are removed after applying the proposed method.
- the present off-resonance correction method is computationally efficient.
- the image reconstruction system of our 1.5T Avanto scanner uses an AMD OpetronTM.
- Our online reconstruction program takes about 1 to 2 seconds and 2 to 3 seconds when using linear and polynomial map constraint, respectively, to process a single coil data set with the parameters specified in the method section.
- off-resonance correction can reduce image blurring artifacts and increase spatial resolution in spiral imaging without losing SNR. We did not observe visible SNR change when applying our proposed algorithm for off-resonance correction.
- One limitation of the present method is that it assumes the field is slowly varying in space. Though this assumption is valid in common applications, it can be violated in certain regions in the body, such as near the sinus. The present algorithm is inapplicable at those regions.
- Automatic off-resonance correction methods use the minimum of the imaginary component of the image as a focusing criterion. Flow can also induce phase in MR images. As discussed by Man et al, this is not a problem when applying automatic off-resonance correction for spiral imaging since it is resistant to motion artifacts. For spiral imaging off isocenter, concomitant gradients may also induce image phase and can cause image blurring artifacts.
- Automatic off-resonance correction involves image reconstruction at a set of constant frequencies ⁇ i ⁇ .
- the signal is first demodulated by the constant frequencies ⁇ i , and then followed by a rapid image reconstruction method, such as gridding, to form an image.
- a rapid image reconstruction method such as gridding
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Abstract
Description
s(t)=∫m(r)exp{−i[2πk(t)·r+Δω(r)t]}dr [1]
m(r)=∫s(t)W(t)exp{i[2πk(t)·r+Δω(r)]}dt, [2]
m(r;Δω i)=∫s(t)exp(iΔω i t)W(t)exp[i2πk(t)·r]dt, [3]
m(r; Δω i)=∫m true(r′)psf(r|r′; Δω i)dr′ [4]
m(r;Δω′ i)=ωs′(t)exp(iΔω′ i t)W′(t)exp(i2π(k′ x(t)x+k′ y(t)y)dt [5]
with
s′(t)≡s(t)·exp(i2πf0t)
k′x(t)≡kx(t)+αt,
k′y(t)≡ky(t)+βt
ε(r;Δω′ 1)=∫H(r) |Im{m(r;Δω′ i)}|α dr, [6]
Δω′L(r)(r), such that L(r)=arg miniε(r;Δω′ i). [7]
∥|m(r)|(Δωp(r)−Δω(r))∥2, [8]
m(r;Δω″ i)=∫s(t)exp{j[(Δω″i+Δωp(r)]t}W(t)exp[i2πk(t)·r]dt, [9]
m(r,Δω i)=∫s(t)exp(iΔω i t)W(t)exp[i2πk(t)·r]dt [A.1]
m(r,Δω i)=∫m true(r′)dr′∫W(t)exp{−i2πk(t)·(r′−r)−[Δω(r′)−Δωi ]t}dt
m(r,Δω i)=∫m true(r′)psf(r|r′;Δωi)dr′ [A.2]
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US9224210B2 (en) | 2013-02-06 | 2015-12-29 | University Of Virginia Patent Foundation | Systems and methods for accelerated dynamic magnetic resonance imaging |
US9953439B2 (en) | 2014-11-25 | 2018-04-24 | University Of Virginia Patent Foundation | Systems and methods for three-dimensional spiral perfusion imaging |
EP3584598A1 (en) * | 2018-06-19 | 2019-12-25 | Koninklijke Philips N.V. | Mr phantom for spiral acquisition |
US10561337B2 (en) | 2015-08-04 | 2020-02-18 | University Of Virginia Patent Foundation | Rapid 3D dynamic arterial spin labeling with a sparse model-based image reconstruction |
US11024025B2 (en) | 2018-03-07 | 2021-06-01 | University Of Virginia Patent Foundation | Automatic quantification of cardiac MRI for hypertrophic cardiomyopathy |
US11320506B2 (en) | 2019-04-08 | 2022-05-03 | University Of Virginia Patent Foundation | Multiband spiral cardiac MRI with non-cartesian reconstruction methods |
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US11867784B2 (en) | 2019-06-04 | 2024-01-09 | Koninklijke Philips N.V. | Spiral MR imaging with off-resonance artefact correction |
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