US20210355473A1 - Chimeric clotting factors - Google Patents

Chimeric clotting factors Download PDF

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US20210355473A1
US20210355473A1 US17/222,636 US202117222636A US2021355473A1 US 20210355473 A1 US20210355473 A1 US 20210355473A1 US 202117222636 A US202117222636 A US 202117222636A US 2021355473 A1 US2021355473 A1 US 2021355473A1
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fvii
polypeptide
clotting factor
factor
moiety
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Joe Salas
Robert Peters
Alan Bitonti
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Bioverativ Therapeutics Inc
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    • C12N9/6424Serine endopeptidases (3.4.21)
    • C12N9/644Coagulation factor IXa (3.4.21.22)
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    • C07K16/2839Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants against the integrin superfamily
    • C07K16/2848Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants against the integrin superfamily against integrin beta3-subunit-containing molecules, e.g. CD41, CD51, CD61
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    • C07K2317/622Single chain antibody (scFv)
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Definitions

  • Initiation of the extrinsic clotting pathway is mediated by the formation of a complex between tissue factor, which is exposed as a result of injury to a vessel wall, and Factor VIIa.
  • This complex then converts Factors IX and X to their active forms.
  • Factor Xa converts limited amounts of prothrombin to thrombin on the tissue factor-bearing cell. This resulting thrombin is then able to diffuse away from the tissue-factor bearing cell and activate platelets, and Factors V and VIII, making Factors Va and VIIIa.
  • Factor Xa is generated by Factor IXa (in complex with factor VIIIa) on the surface of activated platelets.
  • Factor Xa in complex with the cofactor Factor Va, activates prothrombin into thrombin, generating a thrombin burst.
  • the cascade culminates in the conversion of fibrinogen to fibrin by thrombin, which results in the formation of a fibrin clot.
  • Factor VII and tissue factor are key players in the initiation of blood coagulation.
  • Factor VII is a plasma glycoprotein that circulates in blood as a single-chain zymogen.
  • the zymogen is catalytically inactive.
  • single-chain Factor VII may be converted to two-chain Factor VIIa by a variety of factors in vitro, Factor Xa is an important physiological activator of Factor VII.
  • the conversion of zymogen Factor VII into the activated two-chain molecule occurs by cleavage of the peptide bond linking the Arginine residue at amino acid position 152 and the Ile residue at amino acid position 153 .
  • tissue factor, phospholipids and calcium ions the two-chain Factor VIIa activates Factor X or Factor IX.
  • Factor VIIa is thought to be the physiologic initiator of the clotting cascade by acting at the surface of a TF-bearing cell, typically a damaged endothelial cell, and generating the initial amount of thrombin that then diffuses to platelets to activate them and prime them for the propagation phase of thrombin generation.
  • recombinant FVIIa acts by activating Factor X on the surface of activated platelets, bypassing the need for FIXa or FVIIIa to generate a thrombin burst during the propagation phase of coagulation. Since FVIIa has relatively low affinity for platelets, recombinant FVIIa is dosed at supra-physiological levels. This process is thought be tissue factor-independent.
  • Human factor IX circulates as a single-chain glycoprotein (mol wt 57,000). It is present in plasma as a zymogen and is converted to a serine protease, Factor IXa ⁇ (more commonly referred to as FIXa), by Factor XIa (activated plasma thromboplastin antecedent) in the presence of calcium ions. In the activation reaction, two internal peptide bonds are hydrolyzed in Factor IX. These cleavages occur at a specific arginyl-alanine peptide bond and a specific arginyl-valine peptide bond.
  • Factor IXa ⁇ is composed of a light chain (mol wt approximately equal to 18,000) and a heavy chain (mol wt approximately equal to 28,000), and these chains are held together by a disulfide bond.
  • Factor X is also synthesized as a single-chain polypeptide containing the light and heavy chains connected by an Arg-Lys-Arg tripeptide. The single-chain molecule is then converted to the light and heavy chains by cleavage of two (or more) internal peptide bonds.
  • Clotting factors have been administered to patients to improve hemostasis for some time.
  • the advent of recombinant DNA technology has significantly improved treatment for patients with clotting disorders, allowing for the development of safe and consistent protein therapeutics.
  • recombinant activated factor VII has become widely used for the treatment of major bleeding, such as that which occurs in patients having haemophilia A or B, deficiency of coagulation Factors XI or VII, defective platelet function, thrombocytopenia, or von Willebrand's disease.
  • Recombinant factor IX is therapeutically useful as well.
  • the instant invention relates to chimeric clotting factors which have enhanced activity.
  • the present invention features inter alia methods for making chimeric clotting factors, the chimeric clotting factors made using these methods, and methods for improving hemostasis using these clotting factors.
  • the chimeric clotting factors of the invention possess enhanced pharmacokinetic properties, have reduced clearance rates, have improved manufacturability, have reduced thrombogenicity, have enhanced activity, or more than one of these characteristics.
  • improved clotting factors of the invention have increased activity where needed, e.g., by targeting the clotting factor to platelets or by being present in a subject in an activatable form (a non-naturally occurring activatable form) that is activated at the site of clot formation.
  • the invention pertains to a chimeric clotting factor which comprises a clotting factor selected from the group consisting of FVII, FIX and FX and a targeting moiety which binds to platelets and optionally a spacer moiety between the clotting factor and the targeting moiety.
  • the clotting factor comprises a structure represented by the formula A B C, wherein A is the clotting factor; wherein B is a spacer moiety; and wherein C is at least one targeting moiety which binds to platelets.
  • the clotting factor comprises a structure from amino terminus to carboxy terminus represented by a formula selected from the group consisting of: A B C; C B A
  • the clotting factor exhibits increased generation of thrombin in the presence of platelets as compared to an appropriate control lacking the at least one targeting moiety.
  • the clotting factor comprises a scaffold moiety and, optionally, a second spacer moiety.
  • the clotting factor further comprises D and E, wherein D is a spacer moiety; and E is a scaffold moiety and wherein the chimeric clotting factor comprises a structure from amino terminus to carboxy terminus represented by a formula selected from the group consisting of: A B C D E; A D E B C; E D A B C; C B A D E; E D C B A; and C B E D A.
  • E is a dimeric Fc region comprising a first Fc moiety, F1 and a second Fc moiety, F2.
  • the clotting factor is expressed as a polypeptide comprising a cleavable scFc (cscFc) linker interposed between two Fc moieties, wherein the cscFc linker is adjacent to at least one enzymatic cleavage site which results in cleavage of the cscFc polypeptide linker.
  • cscFc cleavable scFc
  • the cscFc linker is adjacent to at least one enzymatic cleavage site which results in cleavage of the cscFc linker.
  • the chimeric clotting factor of claim 9 wherein the at least one enzymatic cleavage site is an intracellular processing site.
  • polypeptide linker is flanked by two enzymatic cleavage sites which are recognized by the same or by different enzymes.
  • the polypeptide linker has a length of about 10 to about 50 amino acids.
  • the polypeptide linker has a length of about 20 to about 30 amino acids.
  • the polypeptide linker comprises a gly/ser peptide.
  • the gly/ser peptide is of the formula (Gly 4 Ser)n, or Ser(Gly 4 Ser)n wherein n is a positive integer selected from the group consisting of 1, 2, 3, 4, 5, 6, 7, 8, 9 and 10.
  • the (Gly 4 Ser)n linker is selected from the group consisting of (Gly 4 Ser)6, Ser(Gly 4 Ser)6, (Gly 4 Ser)4 and Ser(Gly 4 Ser)4.
  • the clotting factor comprises two polypeptide chains.
  • the chimeric clotting factor has a structure selected from the group consisting of: A linked to F1 via a spacer moiety and C linked to F2; A linked to F1 via a spacer moiety and C linked to F2 via a spacer moiety; A linked to F1 and C is linked to F2 via a spacer moiety; A linked to F1 via a spacer moiety and C is linked to F2 via a spacer moiety.
  • a chimeric clotting factor comprises two polypeptides wherein the first polypeptide comprises the moieties A B F1; A B F1; A B F1; or A B F1 D C and the second polypeptide comprises the moieties C F2; C D F2; F2 D C; or F2 D C, wherein the two polypeptide chains form an Fc region.
  • the targeting moiety is fused to at least one of the polypeptide chains of the Fc region. In one embodiment, the targeting moiety is fused to at least one of F1 and F2 directly. In one embodiment, the targeting moiety is fused to at least one of F1 and F2 via a spacer moiety. In one embodiment, the targeting moiety is fused to at least one of F1 and F2 via a cleavable linker. In one embodiment, the targeting moiety is selected from the group consisting of: an antibody molecule, an antigen binding fragment of an antibody molecule, an scFv molecule, a receptor binding portion of a receptor, a peptide. In one embodiment, wherein the targeting moiety binds to resting platelets.
  • the targeting moiety selectively binds to activated platelets. In one embodiment, the targeting moiety selectively binds to a target selected from the group consisting of: GPIba, GPVI, and the nonactive form of GPIIb/IIIa. In one embodiment, the targeting moiety selectively binds to a target selected from the group consisting of: the active form of GPIIb/IIIa, P selectin, GMP-33, LAMP-1, LAMP-2, CD40L, and LOX-1. In one embodiment, the targeting moiety binds to the GPIb complex In one embodiment, the targeting moiety is a peptide selected from the group consisting of: PS4, OS1, and OS2. In one embodiment, the targeting moiety comprises an antibody variable regions from an antibody selected from the group consisting of: SCE5, MB9, and AP3.
  • the clotting factor is Factor VII.
  • the clotting factor is a high specific activity variant of Factor VII. In one embodiment, the clotting factor is Factor IX. In one embodiment, the clotting factor is a high specific activity variant of Factor IX. In one embodiment, the clotting factor is Factor X. In one embodiment, clotting factor is a high specific activity variant of Factor X.
  • the clotting factor is secreted by a cell in active form. In one embodiment, the clotting factor is activated in vivo.
  • the chimeric clotting factor comprises a heterologous enzymatic cleavage site not naturally present in the clotting factor.
  • the enzymatic cleavage site is genetically fused to the amino terminus of the heavy chain moiety of the clotting factor.
  • the clotting factor comprises a scaffold moiety is a protein molecule which increases the hydrodynamic radius of the chimeric clotting factor.
  • the scaffold moiety if present, is selected from the group consisting of albumin and XTEN®
  • the invention pertains to a polypeptide comprising FVII, which
  • FVII comprises a heterologous enzymatic cleavage site activatable by a component of the clotting cascade.
  • the polypeptide comprises a scaffold moiety and, optionally, a spacer moiety.
  • the scaffold moiety is a dimeric Fc region comprising a first Fc moiety, F1 and a second Fc moiety, F2.
  • the clotting factor comprises two polypeptide chains.
  • the chimeric clotting factor has a structure selected from the group consisting of: the clotting factor linked to the first Fc moiety via a spacer moiety; the clotting factor linked to the second Fc moiety via a spacer moiety; the clotting factor is directly linked to F1; and the clotting factor is directly linked to F2.
  • the chimeric clotting factor further comprises a targeting moiety.
  • the chimeric clotting factor is synthesized as a single polypeptide chain comprising a cscFc linker.
  • the cscFc linker is linked to (e.g., directly linked or adjacent to) at least one enzymatic cleavage site which results in cleavage of the linker.
  • the at least one enzymatic cleavage site is an intracellular processing site.
  • the cscFc linker is flanked by two enzymatic cleavage sites which are recognized by the same or by different enzymes.
  • the cscFc linker has a length of about 10 to about 50 amino acids. In one embodiment, the cscFc linker has a length of about 20 to about 30 amino acids.
  • the cscFc linker comprises a gly/ser peptide.
  • the gly/ser peptide is of the formula (Gly 4 Ser)n, or Ser(Gly 4 Ser)n wherein n is a positive integer selected from the group consisting of 1, 2, 3, 4, 5, 6, 7, 8, 9 and 10.
  • the (Gly 4 Ser)n linker is selected from the group consisting of (Gly 4 Ser)6, Ser(Gly 4 Ser)6, (Gly 4 Ser)4 and Ser(Gly 4 Ser)4.
  • the clotting factor is a high specific activity variant of Factor VII.
  • the heterologous enzymatic cleavage site present in the chimeric clotting factor is cleaved at the site of clot formation.
  • the cleavage site is selected from the group consisting of: a factor XIa cleavage site, a factor Xa cleavage site, and a thrombin cleavage site.
  • the enzymatic cleavage site is genetically fused to the amino terminus of the heavy chain moiety of the clotting factor.
  • the targeting moiety binds to resting platelets. In one embodiment, the targeting moiety selectively binds to activated platelets.
  • the targeting moiety selectively binds to a target selected from the group consisting of: GPIba, GPVI, and the nonactive form of GPIIb/IIIa. In one embodiment, the targeting moiety selectively binds to a target selected from the group consisting of: the active form of GPIIb/IIIa, P selectin, GMP-33, LAMP-1, LAMP-2, CD40L, and LOX-1.
  • the scaffold moiety is a protein molecule which increases the hydrodynamic radius of the chimeric clotting factor. In one embodiment, the scaffold moiety, if present, is selected from the group consisting of albumin and XTEN®
  • the invention pertains to a linear sequence of moieties from amino terminus to carboxy terminus selected from the group consisting of: A B C; C B A; A B C D E; A D E B C, E D A B C, C B A D E, E D C B A, C B E D A, wherein A an activatable clotting factor, B is absent or is a linker, C is a targeting moiety, D is absent or is a linker, and E is a scaffold moiety.
  • the clotting factor comprises a light and heavy chain of a clotting factor and each of the light and heavy chains are expressed as separate polypeptide chains.
  • the invention pertains to a nucleic acid molecule encoding a chimeric clotting factor of the invention.
  • the nucleic acid molecule is present in a vector.
  • the vector further comprises a nucleotide sequence encoding an enzyme which cleaves at least one of the enzymatic cleavage sites.
  • the invention pertains to a host cell comprising the expression vector of the invention.
  • the host cell expresses an enzyme capable of intracellular processing.
  • the enzyme is endogenous to the cell.
  • the enzyme is heterologous to the cell.
  • the invention in another embodiment, pertains to a method for producing a chimeric clotting factor comprising culturing the host cell in culture and recovering the chimeric clotting factor from the medium.
  • the invention pertains to a processed, heterodimeric polypeptide comprising two polypeptide chains, wherein said processed, heterodimeric polypeptide is made by expressing the vector in a cell cultured in cell culture medium and isolating the mature, heterodimeric polypeptide from the culture medium.
  • the invention pertains to a composition comprising a chimeric clotting factor and a pharmaceutically acceptable carrier.
  • the invention in another embodiment, pertains to a composition comprising the nucleic acid molecule of the invention and a pharmaceutically acceptable carrier.
  • the invention in another embodiment, pertains to a method for improving hemostasis in a subject, comprising administering the composition of the invention.
  • the invention in one aspect, pertains to an chimeric clotting factor which comprises a light chain moiety and a heavy chain moiety of a clotting factor, and at least one targeting moiety, wherein said targeting moiety (i) specifically binds to platelets, (ii) is not interposed between the light and heavy chains of the clotting factor, and wherein said chimeric clotting factor exhibits increased generation of thrombin in the presence of platelets as compared to an appropriate control lacking the at least one targeting moiety.
  • the invention pertains to an chimeric clotting factor, which comprises the moieties A-B-C-D-E in linear sequence wherein A is a clotting factor, an activatable clotting factor, or an activated clotting factor; B is absent or is a linker; C is a targeting moiety; D is absent or is a linker; and E is absent or is a scaffold moiety.
  • the invention pertains to an chimeric clotting factor, which comprises a linear sequence of moieties from amino terminus to carboxy terminus selected from the group consisting of: ABC; ABCDE; ADEBC, EDABC, CBADE, EDCBA, CBEDA, wherein A is a clotting factor, an activatable clotting factor or an activated clotting factor, B is absent or is a linker, C is a targeting moiety, D is absent or is a linker, and E is a scaffold moiety.
  • A is a clotting factor, an activatable clotting factor or an activated clotting factor
  • B is absent or is a linker
  • C is a targeting moiety
  • D is absent or is a linker
  • E is a scaffold moiety.
  • the invention pertains to an chimeric clotting factor, which comprises a linear sequence of moieties from amino terminus to carboxy terminus selected from the group consisting of: ABF1:F2; ABF1:CDF2; ABF1:F2DC, ABF1DC:F2DC, wherein A is a clotting factor, an activatable clotting factor or an activated clotting factor, B is absent or is a linker, C is a targeting moiety, D is absent or is a linker, and F1 and F2 are each an Fc moiety, and: represents dimerization mediated by the F1 and F2 chains of two polypeptide chains.
  • A is a clotting factor, an activatable clotting factor or an activated clotting factor
  • B is absent or is a linker
  • C is a targeting moiety
  • D is absent or is a linker
  • F1 and F2 are each an Fc moiety, and: represents dimerization mediated by the F1 and F2
  • the invention pertains to an chimeric clotting factor which comprises a light chain moiety and a heavy chain moiety of a clotting factor, and at least one targeting moiety, wherein said targeting moiety specifically binds to platelets, wherein the chimeric clotting factor comprises a disulfide linked Fc region which comprises two polypeptide chains.
  • FIG. 1 illustrates exemplary chimeric clotting factor constructs comprising a targeting domain. These exemplary constructs comprise an Fc region.
  • FIG. 2 illustrates exemplary chimeric clotting factor constructs comprising a targeting domain.
  • These exemplary constructs comprise a cleavable single chain Fc (cscFc) in which the scFc linker is processed by a cell in which it is expressed to form a two chain Fc region.
  • cscFc cleavable single chain Fc
  • FIG. 3 illustrates exemplary chimeric clotting factor constructs which comprise a targeting domain and wherein the clotting factor moiety lacks a Gla domain. These exemplary constructs comprise an Fc region.
  • FIG. 4 illustrates exemplary chimeric clotting factor constructs which comprise a targeting domain and wherein the clotting factor moiety lacks a Gla domain.
  • These exemplary constructs comprise a cleavable single chain Fc (cscFc) in which the scFc linker is processed by a cell in which it is expressed to form a two chain Fc region.
  • cscFc cleavable single chain Fc
  • FIG. 5 illustrates exemplary chimeric clotting factor constructs which are activated (e.g., after activation in vitro or by separate expression of the light and heavy chains of the clotting factor) or which are activatable, i.e., comprise a moiety which is cleavable in vivo at the site of a clot (see panels D and E). These exemplary constructs comprise an Fc region. Constructs A, B, and C did not express well in early experiments.
  • FIG. 6 illustrates exemplary chimeric clotting factor constructs which are activated (e.g., after activation in vitro or by separate expression of the light and heavy chains of the clotting factor) or which are activatable, i.e., comprise a moiety which is cleavable in vivo at the site of a clot.
  • These exemplary constructs comprise a cleavable single chain Fc (cscFc) in which the scFc linker is processed by a cell in which it is expressed to form a two chain Fc region.
  • FIG. 7 illustrates exemplary chimeric clotting factor constructs comprising a targeting domain.
  • FIG. 8 illustrates exemplary chimeric clotting factor constructs which comprise a targeting domain and wherein the clotting factor moiety lacks a Gla domain.
  • FIG. 9 illustrates exemplary chimeric clotting factor constructs which are activated (e.g., after activation in vitro or by separate expression of the light and heavy chains of the clotting factor) or which are activatable, i.e., comprise a moiety which is cleavable in vivo at the site of a clot.
  • FIG. 10 shows SDS PAGE for purification and activation of FVII-011.
  • FIG. 11 shows SDS PAGE for purification of active FVII-053.
  • FIG. 12A shows schematics of FVII-011 and FVII-102
  • FIG. 12B shows binding of FVIII-011 and FVII-027 to activated platelets determined by FACS.
  • FIGS. 13A, 13B, 13C, and 13D show thrombin generation assays to measure activity of FVII-027, FVII-011 and NOVOSEVEN® in the presence of activated platelets.
  • FIG. 14A shows that PAC-1 eliminates increased binding to platelets associated with FVII-027
  • FIG. 14B shows that PAC-1 eliminates increased rates of thrombin generation associated with FVII-027.
  • FIG. 15 shows constructs used in a thrombin generation assay to measure activity of FVII-037 and NOVOSEVEN® in the presence of activated platelets.
  • FIGS. 16A, 16B, and 16C show thrombin generation assays to measure activity of FVII-037 and NOVOSEVEN® in the presence of activated platelets.
  • FIG. 17 shows the constructs used in the thrombin generation assay to measure activity of FVII-044, FVII-045, FVII-046, FVII-011 and NOVOSEVEN® in the presence of activated platelets shown in FIGS. 18A, 18B, 18C, and 18D .
  • FIGS. 18A, 18B, 18C, and 18D show thrombin generation assays to measure activity of FVII-044, FVII-045, FVII-046, FVII-011 and NOVOSEVEN® in the presence of activated platelets.
  • FIG. 19 shows the constructs used in the thrombin generation assay to measure activity of FVII-047, FVII-048, FVII-049, FVII-011 and NOVOSEVEN® in the presence of activated platelets shown in FIGS. 20A, 20B, 20C, and 20D .
  • FIGS. 20A, 20B, 20C, and 20D show thrombin generation assays to measure activity of FVII-047, FVII-048, FVII-049, FVII-011 and NOVOSEVEN® in the presence of activated platelets.
  • FIG. 21 shows the construct used in the thrombin generation assay to measure activity of FVII-053 and FVII-011 in the presence of activated platelets shown in FIGS. 22A, 22B, 22C, and 22D .
  • FIGS. 22A, 22B, 22C, and 22D show thrombin generation assays to measure activity of FVII-053 and FVII-011 in the presence of activated platelets.
  • FIGS. 23A and 23B show that PAC-1 eliminates increased rate of thrombin generation associated with FVII-053.
  • FIG. 24 shows the constructs used in the Western blot analysis of FVIIFc species following transient transfection of HEK 293 cells and protein A pulldown shown in FIG. 25 .
  • FIG. 25 shows Western blot analysis of FVIIFc species following transient transfection of HEK 293 cells and protein A pulldown.
  • FIG. 26 shows Western blot of protein A immunoprecipitation following transient transfection of pSYN-FVII-024 with or without pSYN-PC5-003.
  • Lane 1 pSYN-FVII-024, non reducing;
  • lane 2 pSYN-FVII-024, non reducing;
  • lane 3 pSYN-FVII-024, reducing;
  • FIG. 27 shows Western blot analysis (Fc western) of FVIIFc species following transient transfection of HEK 293 cells and protein A pulldown.
  • FIG. 28 shows FVII-039 and FVII-040 treatment by FXIa.
  • FIG. 29 shows that an FVIIaFc variant targeted to active form of GPIIbIlla shows an increased rate of thrombin generation.
  • FIG. 30 shows a Rotation Thromoboelastometry (ROTEM) assay to measure the activity of FVII-088 and wild type recombinant FVIIaFc in hemophilia A human blood. Clotting Time, Clot Forming Time and Alpha Angle parameters are shown.
  • ROTEM Rotation Thromoboelastometry
  • FIG. 31 shows exemplary cleavage sites and illustrative positions of such cleavage sites in activatable clotting factor constructs.
  • FVII is used as an example.
  • FIG. 32 shows cleavage of the constructs illustrated in FIG. 31 .
  • FIG. 33 shows additional activatable constructs and a Western blot illustrating their cleavage.
  • FIG. 34 shows the results of a thrombin generation assay using the FVII-062 and -090 constructs.
  • FVII-062 is a negative control which lacks a thrombin cleavage site, so the construct cannot be activated.
  • FVII-090 contains the ALRPR cleavage site and so is activatable by thrombin.
  • FIG. 35 illustrates the cleavage of high specific activity FVII variants.
  • FVII heavy chain-Fc and light chain Fc collapse in 1 band because the heavy chain loses a glycosylation site after insertion of the trypsin 170 loop and becomes smaller.
  • FIG. 36 illustrates the results of a thrombin generation assay using FVII-090 and
  • FIG. 37 illustrates the results of a thrombin generation assay using FVII-090 and
  • FIG. 38 illustrates amidolytic activity of activatable FVIIFC activated with thrombin.
  • Amidolytic activity of the activatable variants can be measured following thrombin activation and there is increased amidolytic activity for the high specific activity variants as compared to FVII-090.
  • hirudin is added to inhibit thrombin cleavage of the chromogenic substrate. In this manner, the thrombin does not interfere with the ability to detect FVIIa activity.
  • FIG. 39 illustrates the results of an assay measuring activation of FX by FVIIa using substrate S2765, which is not cleaved by FVIIa.
  • 10 uM of FX was incubated with FVIIaFc for 15 minutes at 37° C. The reaction was quenched with EDTA and substrate was added.
  • FIG. 39 shows the results of the control experiment which demonstrates that FX activation by FVIIaFc can be detected.
  • FIG. 40 shows FXa generation activity by “activatable FVIIFc.”
  • the experiment shown in FIG. 40 shows that there is an increase in FX activation activity for the high specific activity variants.
  • FVIIFc 100 nM
  • thrombin 100 nM
  • Hirudin was added to inhibit the thrombin.
  • FX (10 uM) was added, followed by EDTA to inhibit the reaction.
  • the activity of FX was measured by detecting the FXa substrate.
  • FIG. 41 illustrates exemplary activatable construct formats, including an activatable monomer structure used in FVII-118, FVII-119, and FVII-127.
  • FIG. 42 illustrates the efficiency of thrombin cleavage of activatable constructs, specifically monomeric (FVII-118 and -119) as compared to the heterodimeric (FVII-090).
  • FIG. 43 illustrates the results of a thrombin generation assay to compare wild type activatable FVIIFc (FVII-118) to the high specific activity variant (FVII-127).
  • FIG. 44A illustrates several targeted constructs.
  • an SCE5 scFv which binds to the active conformation of GPIIbIIIa was included at various sites in the construct.
  • FIG. 44B illustrates the results of thrombin generation assays in platelet-rich FVIII-deficient plasma using these constructs.
  • N7 is the NOVOSEVEN® control.
  • FIG. 44C illustrates the binding of recombinant FVIIaFc variants to platelets by FACs.
  • FIG. 45A illustrates several targeted FVIIa constructs which include AP3, an scFv against GPIIbIIIa present on resting and activated platelets.
  • FIG. 45B shows the results of thrombin generation assays in platelet-rich FVIII-deficient plasma.
  • FIG. 45C shows the results of binding of rFVIIaFc variants to platelets by FACS.
  • FIG. 46A shows several targeted FVIIa constructs that target GPIb-alpha using peptides that bind to that molecule, specifically, the PS4, OS1, and OS2 peptides.
  • FIG. 46B shows the results of thrombin generation assays in platelet-rich FVIII-deficient plasma using the C terminal peptide constructs shown in FIG. 46A .
  • FIG. 47A shows the results of thrombin generation assays in platelet-rich FVIII-deficient plasma using the N terminal peptide constructs shown in FIG. 46A .
  • FIG. 47B shows a direct comparison of FVII-045 and FVII-048.
  • FIG. 48 shows the binding of FVII-045 and FVII-048 and wild type FVIIaFc to platelets as determined by FACS. The figure also shows the affinity of the targeting peptides as reported in Bernard et al. Biochemistry 2008, 47:4674-4682.
  • FIG. 49A shows an exemplary targeted FVIII construct.
  • FIG. 49B shows the results of a thrombin generation assay in FVIII deficient platelet-rich plasma. In this experiment, the assay was activated with tissue factor (top panel) or by platelet activation (bottom panel).
  • FIG. 50 shows results of an experiment measuring half life of a targeted FVII construct comprising a g1a domain (FVII-011) and lacking a g1a domain (FVII-028).
  • FIG. 51A shows several FIX construct comprising targeting moieties, in this case SCE5 scFv.
  • FIG. 51B shows the results of thrombin generation assays in platelet-rich FIX-deficient plasma using the constructs of FIG. 51A .
  • FIG. 51C illustrates that both FIX-068 and FIX-088 have at least 4 times more activity than FIX-042 as measured by Thrombin generation.
  • FIG. 52A shows the results of a thrombin generation assay comparing FIX-090 and BENEFIX®.
  • FIG. 52B shows that the activity of FIX-090 is almost 4 times that of BENEFIX®.
  • FIG. 53A shows a targeted FIX construct comprising a peptide that binds to GPIb, present on resting and activated platelets.
  • FIG. 53B shows the results of thrombin generation assays in platelet-rich FIX deficient plasma.
  • FIG. 53C demonstrates that FIX-089 is roughly 4-times stronger than FIX-042 as measured by thrombin generation, while having a lower specific activity.
  • the present invention relates to chimeric clotting factors.
  • the present invention is based, at least in part, on the development of novel ways to enhance the efficacy, pharmacokinetic properties, and/or manufacturability of clotting factors.
  • improved clotting factors of the invention have increased activity where needed, e.g., by targeting the clotting factor to platelets or by being present in a subject in an activatable form (a non-naturally occurring activatable form) that is activated at the site of clot formation. This can be accomplished, e.g., by targeting the clotting factors or by making them in an activatable form.
  • the subject clotting factors are targeted to the site of coagulation.
  • a targeting moiety which targets the clotting factor to resting or activated platelets By incorporating a targeting moiety which targets the clotting factor to resting or activated platelets, the activity of a clotting factor can be enhanced.
  • exogenous FVIIa in the case of factor VII, unlike endogenous FVII that is likely activated by tissue factor (TF) at endothelial cell surfaces to generate activated factor X (FXa), exogenous FVIIa likely generates FXa/FIXa in a TF independent manner, most effective at the surface of activated platelets where other clotting factors are localized.
  • physiologically FVIIa acts at the surface of a TF-bearing cell, such as an endothelial cell, and has low affinity for platelets.
  • FVIIa acts by converting Factor X into Factor Xa on the surface of activated platelets.
  • recombinant FVIIa is dosed at supra-physiological levels. Therefore, in the case of FVIIa, targeting to platelet surfaces could significantly increase the efficacy of this molecule.
  • other clotting factors e.g. FIX, FVIII, FX
  • FVIIa has a relatively short half-life ( ⁇ 2.3 hours) in humans. This short half-life likely contributes to the need to dose recombinant FVIIa multiple times to control a bleed.
  • targeting clotting factors, and in particular FVIIa to platelets improves efficiency.
  • the targeting moiety can be positioned at a number of places in a chimeric doting factor.
  • Exemplary structures of targeted chimeric clotting factors are set forth, e.g., in FIGS. 1-4, 7, 8, 17, 19, 21, 44, 46, 49, 51, and 53 .
  • a chimeric clotting factor of the invention is made in a form that is activatable at the cite of coagulation.
  • exogenous clotting factors are only efficacious when given in the activated form.
  • activated clotting factors are rapidly inactivated by endogenous pathways (e.g. antithrombin III, TFPI), leading to clearance of the active form and a short effective half life. Giving higher doses does not solve this problem as it can result in thrombogenic effects.
  • the invention pertains to an “activatable” chimeric clotting factor constructs which comprise a heterologous enzymatic cleavage site not normally present in the clotting factor.
  • heterologous enzymatic cleavage site is one for an enzyme produced during the clotting cascade.
  • the heterologous cleavage site of an activatable construct comprises a Factor XIa, Xa, or thrombin cleavage site.
  • Exemplary FXIa cleavage sites include, e.g.: TQSFNDFTR and SVSQTSKLTR.
  • Exemplary thrombin cleavage sites include, e.g.: DFLAEGGGVR, TTKIKPR, and ALRPR.
  • a heterologous cleavage site is interposed between the light and heavy chains of the clotting factor.
  • a heterologous cleavage site is not interposed between the two chains of the clotting factor.
  • the heterologous cleavage site is amino terminal to the heavy chain of the clotting factor.
  • the heterologous cleavage site is present in a cleavable linker can be positioned at a number of places in a chimeric doting factor.
  • exemplary structures of activatable chimeric clotting factors are set forth, e.g., in FIGS. 5, 6, 9, 29, 27, 31, and 41 . Exemplary such constructs are activated in the presence of clot formation and are described in more detail below.
  • a chimeric clotting factor of the invention comprises a scaffold, e.g., to enhance the hydrodynamic radius of the molecule.
  • a chimeric clotting factor of the invention may be a fusion protein.
  • Exemplary scaffolds include, e.g., FcRn binding moieties (e.g., complete Fc regions or portions thereof which bind to FcRn), single chain Fc regions (ScFc regions, e.g., as described in US 2008/0260738, WO 2008/012543, or WO 2008/1439545), cleaveable scFc regions (comprising a cscFc regions as described herein), less complicated proteins or portions thereof, e.g., XTen polypeptides®, or albumin.
  • a chimeric clotting factor of the invention employs an Fc region or an FcRn binding portion thereof as a scaffold moiety.
  • the Fc moiety to which the chimeric clotting factor is fused is a naturally occurring (or wild type (WT)) Fc moiety.
  • WT wild type
  • the Fc moiety comprises one or more variations in sequence.
  • the Fc moiety is a scFc moiety (e.g., comprising a non-cleavable or a cscFc linker).
  • a scFc moiety e.g., comprising a non-cleavable or a cscFc linker.
  • an unprocessed molecule comprises a cleavable single chain Fc region in which the component Fc moieties are genetically-fused in a single polypeptide chain forming a functional, single chain, dimeric Fc region.
  • the cscFc linker can link the Fc moieties that will comprise the dimeric Fc region of the polypeptide in tandem or may link one Fc moiety to a non-Fc moiety of the construct, e.g., a clotting factor or targeting moiety, which is, in turn, linked to a second Fc moiety.
  • the cscFc linker is interposed between the Fc moieties that comprise the scFc region and is flanked by at least one enzymatic cleavage site, e.g., an intracellular enzymatic processing sites.
  • the scFc linker is flanked by two enzymatic cleavage sites resulting in the excision of the linker (e.g., all or substantially all of the linker) when the protein encoded by the nucleic acid molecule is processed in a cell
  • the scFc linker is adjacent to at least one enzymatic cleaveage site that allows for excision of the linker in vitro after the polypeptide has been secreted by a cell or comprises at least one enzymatic cleaveage site that allows for cleavage of the linker in vivo after the construct is administered to a subject.
  • the such a polypeptide comprises scFc region(s) encoded in a single open reading frame (ORF) as part of one contiguous nucleotide sequence in unprocessed form
  • the cscFc linker is enzymatically cleaved (e.g., prior to administration or in vivo after administration), resulting in a polypeptide which is a heterodimeric molecule comprising an Fc region which is not fused in a single amino acid chain, i.e., the resulting processed construct has a Fc region which comprises two polypeptide chains.
  • all or substantially all of the linker is excised, while in some embodiments, a portion of the cleavage site may remain, e.g., four arginines of the RRRR cleavage site.
  • the scFc linker is flanked by two processing sites for cleavage.
  • the two processing sites can be the same or different.
  • at least one processing site is a cluster of basic amino acid residues as recognized by arginine kex2/furin enzymes. Such enzymes cleave immediately C-terminal to an arginine residue.
  • at least one cleavage site is one that may be cleaved in vivo, for example a cleavage site recognized by thrombin.
  • a chimeric clotting factor of the invention is manufactured in an activated form in the context of an scFc molecule comprising a csFc linker.
  • Factor VII is generally produced recombinantly as a zymogen, and requires activation during manufacturing to produce the active form for administration.
  • a chimeric clotting factor of the invention is secreted from the cell in which it is expressed in active form to improve manufacturability.
  • such clotting factors can be produced by incorporating a single chain Fc region into the molecule. Single chain Fc regions are formed by dimerization of Fc moieties which are present in a single polypeptide chain.
  • such a construct comprises an scFc polypeptide linker linking the two Fc moieties of the scFc which is adjacent to at least one intracellular processing site. Cleavage of such a construct is delayed until late in the secretory pathway, e.g., when the protein colocalizes with active processing enzymes in the trans-Golgi apparatus.
  • a cell expressing a construct encoding a polypeptide of the invention endogenously expresses an enzyme which cleaves the scFc linker at one or more processing sites resulting in a dimeric molecule comprising two polypeptide chains.
  • a cell expressing a construct encoding a polypeptide of the invention exogenously expresses an enzyme which cleaves the scFc linker at one or more processing sites.
  • a chimeric clotting factor of the invention can combine two or more of these features to create an optimized construct e.g. targeting an activatable fusion protein construct to resting platelets, such that it can be activated efficiently as well as at a higher local concentration at the site of active coagulation.
  • exemplary such combination constructs include chimeric clotting factors that are both targeted and comprise an scFc linker for enhanced processing.
  • a construct of the invention is targeted and activatable.
  • the invention pertains to a polypeptide having the structure as set forth in the Figures.
  • the invention pertains to a polypeptide having the sequence set forth in the accompanying sequence listing or the the nucleic acid molecule encoding such polypeptides.
  • the invention pertains to a mature form of a polypeptide having the sequence set forth in the accompanying sequence listing. It will be understood that these constructs and nucleic acid molecules encoding them can be used to improve hemostasis in a subject.
  • protein or “polypeptide” refers to a polymer of two or more of the natural amino acids or non-natural amino acids.
  • amino acid includes alanine (Ala or A); arginine (Arg or R); asparagine (Asn or N); aspartic acid (Asp or D); cysteine (Cys or C); glutamine (Gln or Q); glutamic acid (Glu or E); glycine (Gly or G); histidine (His or H); isoleucine (Ile or I): leucine (Leu or L); lysine (Lys or K); methionine (Met or M); phenylalanine (Phe or F); proline (Pro or P); serine (Ser or S); threonine (Thr or T); tryptophan (Trp or W); tyrosine (Tyr or Y); and valine (Val or V).
  • Non-traditional amino acids are also within the scope of the invention and include norleucine, omithine, norvaline, homoserine, and other amino acid residue analogues such as those described in Ellman et al. Meth. Enzym. 202:301-336 (1991).
  • norleucine, omithine, norvaline, homoserine, and other amino acid residue analogues such as those described in Ellman et al. Meth. Enzym. 202:301-336 (1991).
  • the procedures of Noren et al. Science 244:182 (1989) and Ellman et al., supra can be used. Briefly, these procedures involve chemically activating a suppressor tRNA with a non-naturally occurring amino acid residue followed by in vitro transcription and translation of the RNA.
  • Introduction of the non-traditional amino acid can also be achieved using peptide chemistries known in the art.
  • polar amino acid includes amino acids that have net zero charge, but have non-zero partial charges in different portions of their side chains (e.g. M, F, W, S, Y, N, Q, C). These amino acids can participate in hydrophobic interactions and electrostatic interactions.
  • charged amino acid include amino acids that can have non-zero net charge on their side chains (e.g. R, K, H, E, D). These amino acids can participate in hydrophobic interactions and electrostatic interactions.
  • amino acid substitution refers to the replacement of at least one existing amino acid residue in a predetermined amino acid sequence (an amino acid sequence of a starting polypeptide) with a second, different “replacement” amino acid residue.
  • amino acid insertion refers to the incorporation of at least one additional amino acid into a predetermined amino acid sequence. While the insertion will usually consist of the insertion of one or two amino acid residues, the present larger “peptide insertions”, can be made, e.g. insertion of about three to about five or even up to about ten, fifteen, or twenty amino acid residues. The inserted residue(s) may be naturally occurring or non-naturally occurring as disclosed above.
  • amino acid deletion refers to the removal of at least one amino acid residue from a predetermined amino acid sequence.
  • Polypeptides may be either monomers or multimers.
  • a protein of the invention is a dimer.
  • a dimeric polypeptide of the invention may comprise two polypeptide chains or may consist of one polypeptide chain (e.g., in the case of an scFc molecule).
  • the dimers of the invention are homodimers, comprising two identical monomeric subunits or polypeptides (e.g., two identical Fc moieties or two identical biologically active moieties).
  • the dimers of the invention are heterodimers, comprising two non-identical monomeric subunits or polypeptides (e.g., comprising two different clotting factors or portions thereof or one clotting factor only). See, e.g., U.S. Pat. No. 7,404,956, incorporated herein by reference.
  • polypeptide linkers refers to a peptide or polypeptide sequence (e.g., a synthetic peptide or polypeptide sequence) which connects two domains in a linear amino acid sequence of a polypeptide chain.
  • the polypeptides of invention are encoded by nucleic acid molecules that encode polypeptide linkers which either directly or indirectly connect the two Fc moieties which make up the construct. These linkers are referred to herein as “scFc linkers” and the scFc linker is interposed between the two Fc moieties of a polypeptide which comprises it.
  • the scFc linker connects two Fc moieties contiguously in the linear polypeptide sequence, it is a “direct” linkage.
  • the scFc linkers may link the first Fc moiety to a binding moiety which is, in turn, linked to the second Fc moiety, thereby forming an indirect linkage.
  • These scFc linkers permit the formation of a single chain genetic construct.
  • the polypeptides also comprise enzymatic cleavage sites which result in the scFc linker being cleavable (a cscFc linker) and, in one embodiment, substantially excised (e.g., during processing by a cell).
  • the resulting processed polypeptide is a dimeric molecule comprising at least two amino acid chains and substantially lacking extraneous linker amino acid sequences.
  • all or substantially all of the linker is excised, while in some embodiments, a portion of the cleavage site may remain, e.g., four arginines of the RRRR cleavage site.
  • a spacer may be used to connect different moieties, e.g., a clotting factor or targeting moiety to an Fc moiety on the polypeptide.
  • This type of linker may provide flexibility to the polypeptide molecule. Spacers are not typically cleaved; however in certain embodiments, such cleavage may be desirable. Exemplary positions of spacers are shown in the accompanying drawings. Spacers can be located between the clotting factors, targeting moieties, and/or scaffolds, e.g., at the N or C terminus of these moieties. In one embodiment, these linkers are not removed during processing.
  • a third type of linker which may be present in a chimeric clotting factor of the invention is herein referred to as a “cleavable linker” which comprises a heterologous cleavage site (e.g., a factor XIa, Xa, or thrombin cleavage site) and which may include additional spacer linkers on either the N terminal of C terminal or both sides of the cleavage site. Exemplary locations for such sites are shown in the accompanying drawings and include, e.g., placement adjacent to targeting moieties. In another embodiment, such linkers may be adjacent to a clotting factor or portion thereof.
  • a heterologous cleavage site e.g., a factor XIa, Xa, or thrombin cleavage site
  • additional spacer linkers on either the N terminal of C terminal or both sides of the cleavage site. Exemplary locations for such sites are shown in the accompanying drawings and include, e.g., placement adjacent to targeting moie
  • a cleavable linker may be fused to the N terminus of the heavy chain of a clotting factor to make an activatable form of the clotting factor.
  • the cleavable linker may include additional spacer linkers at the N terminus of the cleavage site, but requires direct fusion at the C-terminus of the cleavage site to the amino terminus of the heavy chain of the clotting factor.
  • gly-ser polypeptide linker refers to a peptide that consists of glycine and serine residues.
  • An exemplary gly/ser polypeptide linker comprises the amino acid sequence (Gly 4 Ser) n .
  • SEQ ID NO:4 Another exemplary gly/ser polypeptide linker comprises the amino acid sequence S(Gly 4 Ser) n .
  • a polypeptide or amino acid sequence “derived from” a designated polypeptide or protein refers to the origin of the polypeptide.
  • the polypeptide or amino acid sequence which is derived from a particular sequence has an amino acid sequence that is essentially identical to that sequence or a portion thereof, wherein the portion consists of at least 10-20 amino acids, preferably at least 20-30 amino acids, more preferably at least 30-50 amino acids, or which is otherwise identifiable to one of ordinary skill in the art as having its origin in the sequence.
  • Polypeptides derived from another peptide may have one or more mutations relative to the starting polypeptide, e.g., one or more amino acid residues which have been substituted with another amino acid residue or which has one or more amino acid residue insertions or deletions.
  • the polypeptide comprises an amino acid sequence which is not naturally occurring. Such variants necessarily have less than 100% sequence identity or similarity with the starting antibody.
  • the variant will have an amino acid sequence from about 75% to less than 100% amino acid sequence identity or similarity with the amino acid sequence of the starting polypeptide, more preferably from about 80% to less than 100%, more preferably from about 85% to less than 100%, more preferably from about 90% to less than 100% (e.g., 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%) and most preferably from about 95% to less than 100%, e.g., over the length of the variant molecule.
  • Identity or similarity with respect to this sequence is defined herein as the percentage of amino acid residues in the candidate sequence that are identical (i.e. same residue) with the starting amino acid residues, after aligning the sequences and introducing gaps, if necessary, to achieve the maximum percent sequence identity.
  • polypeptides of the invention comprise an amino acid sequence (e.g., at least one clotting factor or Fc moiety or domain) derived from a human protein sequence.
  • polypeptides may comprise one or more amino acids from another mammalian species.
  • a clotting factor, Fc domain, or targeting moiety may be derived from a non-human species and included in the subject polypeptides.
  • one or more amino acids may be present in a polypeptide which are derived from a non-human species.
  • Preferred polypeptides of the invention are not immunogenic.
  • polypeptides of the invention may be altered such that they vary in amino acid sequence from the naturally occurring or native polypeptides from which they were derived, while retaining the desirable activity of the native polypeptides.
  • nucleotide or amino acid substitutions leading to conservative substitutions or changes at “non-essential” amino acid residues may be made.
  • An isolated nucleic acid molecule encoding a non-natural variant of a polypeptide derived from an immunoglobulin can be created by introducing one or more nucleotide substitutions, additions or deletions into the nucleotide sequence of the immunoglobulin such that one or more amino acid substitutions, additions or deletions are introduced into the encoded protein. Mutations may be introduced by standard techniques, such as site-directed mutagenesis and PCR-mediated mutagenesis.
  • polypeptides of the invention may comprise conservative amino acid substitutions at one or more amino acid residues, e.g., at essential or non-essential amino acid residues.
  • a “conservative amino acid substitution” is one in which the amino acid residue is replaced with an amino acid residue having a similar side chain.
  • Families of amino acid residues having similar side chains have been defined in the art, including basic side chains (e.g., lysine, arginine, histidine), acidic side chains (e.g., aspartic acid, glutamic acid), uncharged polar side chains (e.g., glycine, asparagine, glutamine, serine, threonine, tyrosine, cysteine), nonpolar side chains (e.g., alanine, valine, leucine, isoleucine, proline, phenylalanine, methionine, tryptophan), beta-branched side chains (e.g., threonine, valine, isoleucine) and aromatic side chains (e.g., tyrosine, phenylalanine, tryptophan, histidine).
  • basic side chains e.g., lysine, arginine, histidine
  • acidic side chains e.g., aspartic acid
  • a nonessential amino acid residue in a polypeptide may be replaced with another amino acid residue from the same side chain family.
  • a string of amino acids can be replaced with a structurally similar string that differs in order and/or composition of side chain family members.
  • mutations may be introduced randomly along all or part of a coding sequence, such as by saturation mutagenesis, and the resultant mutants can be incorporated into polypeptides of the invention and screened for their ability to bind to the desired target.
  • a “linear sequence” or a “sequence” is the order of amino acids in a polypeptide in an amino to carboxyl terminal direction in which residues that neighbor each other in the sequence are contiguous in the primary structure of the polypeptide.
  • the terms “linked,” “fused”, or “fusion” refer to linkage via a peptide bonds (e.g., genetic fusion), chemical conjugation or other means.
  • a peptide bonds e.g., genetic fusion
  • polypeptide linkers which link the molecules or moieties via peptide bonds.
  • the terms “genetically fused,” “genetically linked” or “genetic fusion” are used interchangeably and refer to the co-linear, covalent linkage or attachment of two or more proteins, polypeptides, or fragments thereof via their individual peptide backbones, through genetic expression of a single polynucleotide molecule encoding those proteins, polypeptides, or fragments.
  • Such genetic fusion results in the expression of a single contiguous genetic sequence.
  • Preferred genetic fusions are in frame, i.e., two or more open reading frames (ORFs) are fused to form a continuous longer ORF, in a manner that maintains the correct reading frame of the original ORFs.
  • ORFs open reading frames
  • the resulting recombinant fusion protein is a single polypeptide containing two or more protein segments that correspond to polypeptides encoded by the original ORFs (which segments are not normally so joined in nature).
  • the single polypeptide is cleaved during processing to yield dimeric molecules comprising two polypeptide chains.
  • Fc region is defined as the portion of a polypeptide which corresponds to the Fc region of native immunoglobulin, i.e., as formed by the dimeric association of the respective Fc domains of its two heavy chains.
  • a native Fc region is homodimeric and comprises two polypeptide chains.
  • scFc region single-chain Fc region
  • scFc region refers to a synthetic dimeric Fc region comprised of Fc domains genetically linked within a single polypeptide chain (i.e., encoded in a single contiguous genetic sequence).
  • Fc domain refers to the portion of a single immunoglobulin heavy chain beginning in the hinge region just upstream of the papain cleavage site (i.e. residue 216 in IgG, taking the first residue of heavy chain constant region to be 114 ) and ending at the C-terminus of the antibody. Accordingly, a complete Fc domain comprises at least a hinge domain, a CH2 domain, and a CH3 domain.
  • an Fc domain portion includes an amino acid sequence of an Fc domain or derived from an Fc domain.
  • an Fc moiety comprises at least one of: a hinge (e.g., upper, middle, and/or lower hinge region) domain, a CH2 domain, a CH3 domain, a CH4 domain, or a variant, portion, or fragment thereof.
  • an Fc moiety comprises a complete Fc domain (i.e., a hinge domain, a CH2 domain, and a CH3 domain).
  • a Fc moiety comprises a hinge domain (or portion thereof) fused to a CH3 domain (or portion thereof).
  • an Fc moiety comprises a CH2 domain (or portion thereof) fused to a CH3 domain (or portion thereof). In another embodiment, an Fc moiety consists of a CH3 domain or portion thereof. In another embodiment, an Fc moiety consists of a hinge domain (or portion thereof) and a CH3 domain (or portion thereof). In another embodiment, a Fc moiety consists of a CH2 domain (or portion thereof) and a CH3 domain. In another embodiment, a Fc moiety consists of a hinge domain (or portion thereof) and a CH2 domain (or portion thereof). In one embodiment, an Fc moiety lacks at least a portion of a CH2 domain (e.g., all or part of a CH2 domain).
  • half-life refers to a biological half-life of a particular polypeptide in vivo.
  • Half-life may be represented by the time required for half the quantity administered to a subject to be cleared from the circulation and/or other tissues in the animal.
  • the curve is usually biphasic with a rapid ⁇ -phase and longer ⁇ -phase.
  • the ⁇ -phase typically represents an equilibration of the administered Fc polypeptide between the intra- and extra-vascular space and is, in part, determined by the size of the polypeptide.
  • the ⁇ -phase typically represents the catabolism of the polypeptide in the intravascular space. Therefore, in a preferred embodiment, the term half-life as used herein refers to the half-life of the polypeptide in the ⁇ -phase.
  • the typical ⁇ phase half-life of a human antibody in humans is 21 days.
  • moiety refers to a component part or constituent of a chimeric polypeptide.
  • targeting moiety refers to a molecule, fragment thereof or a component of a polypeptide which localizes or directs the polypeptides of the invention to a desired site or cell.
  • a construct of the invention comprises a “targeting moiety” which enhances the activity of the polypeptide, e.g., by localizing the molecule to a desired site.
  • a moiety may be, e.g., an antibody or variant thereof (e.g., and scFv) or a peptide.
  • such a targeting moiety may be a polypeptide, a receptor binding portion of a ligand, or a ligand binding portion of a receptor which is linked to a polypeptide of the invention and binds to the desired target, e.g., on a cell or tissue.
  • the targeting moiety may be genetically fused to a construct, chemically conjugated to the construct or linked to the construct via a spacer.
  • targeting moieties may be attached to a construct of the invention by formation of a bond between the targeting moiety and an Fc moiety of a construct, where the targeting moiety comprises a first functional group and the Fc moiety comprises a second functional group, and where the first and second functional groups are capable of reacting with each other to form a chemical bond (see, e.g., U.S. Pat. No. 7,381,408).
  • a targeting moiety binds to platelets. Exemplary targeting moieties are described in more detail below.
  • a targeting moiety for use in a construct of the invention comprises an antibody variant.
  • antibody variant or “modified antibody” includes an antibody which does not occur in nature and which has an amino acid sequence or amino acid side chain chemistry which differs from that of a naturally-derived antibody by at least one amino acid or amino acid modification as described herein.
  • antibody variant includes synthetic forms of antibodies which are altered such that they are not naturally occurring, e.g., antibodies that comprise at least two heavy chain portions but not two complete heavy chains (such as, domain deleted antibodies or minibodies); multispecific forms of antibodies (e.g., bispecific, trispecific, etc.) altered to bind to two or more different antigens or to different epitopes on a single antigen); heavy chain molecules joined to scFv molecules; single-chain antibodies; diabodies; triabodies; and antibodies with altered effector function and the like.
  • scFv molecule includes binding molecules which consist of one light chain variable domain (VL) or portion thereof, and one heavy chain variable domain (VH) or portion thereof, wherein each variable domain (or portion thereof) is derived from the same or different antibodies.
  • scFv molecules preferably comprise an scFv linker interposed between the VH domain and the VL domain.
  • ScFv molecules are known in the art and are described, e.g., in U.S. Pat. No. 5,892,019, Ho et al. 1989. Gene 77:51; Bird et al. 1988 Science 242:423; Pantoliano et al. 1991 . Biochemistry 30:10117; Milenic et al. 1991 . Cancer Research 51:6363; Takkinen et al. 1991 . Protein Engineering 4:837.
  • a “scFv linker” as used herein refers to a moiety interposed between the VL and VH domains of the scFv. scFv linkers preferably maintain the scFv molecule in a antigen binding conformation.
  • a scFv linker comprises or consists of an scFv linker peptide.
  • a scFv linker peptide comprises or consists of a glyser polypeptide linker.
  • a scFv linker comprises a disulfide bond.
  • glycosylation refers to the covalent linking of one or more carbohydrates to a polypeptide.
  • glycosylation is a posttranslational event which can occur within the intracellular milieu of a cell or extract therefrom.
  • glycosylation includes, for example, N-linked glycosylation (where one or more sugars are linked to an asparagine residue) and/or O-linked glycosylation (where one or more sugars are linked to an amino acid residue having a hydroxyl group (e.g., serine or threonine).
  • a molecule of the invention is glycosylated.
  • a molecule of the invention is glycosylated.
  • a molecule of the invention has reduced glycosylation as compared to that in a wild type Fc region.
  • disulfide bond includes the covalent bond formed between two sulfur atoms.
  • the amino acid cysteine comprises a thiol group that can form a disulfide bond or bridge with a second thiol group.
  • the CH1 and CL regions are linked by native disulfide bonds and the two heavy chains are linked by two native disulfide bonds at positions corresponding to 239 and 242 using the Kabat numbering system (position 226 or 229 , EU numbering system).
  • vector or “expression vector” is used herein to mean vectors used in accordance with the present invention as a vehicle for introducing into and expressing a desired polynucleotide in a cell.
  • vectors may easily be selected from the group consisting of plasmids, phages, viruses and retroviruses.
  • vectors compatible with the instant invention will comprise a selection marker, appropriate restriction sites to facilitate cloning of the desired gene and the ability to enter and/or replicate in eukaryotic or prokaryotic cells.
  • one class of vector utilizes DNA elements which are derived from animal viruses such as bovine papilloma virus, polyoma virus, adenovirus, vaccinia virus, baculovirus, retroviruses (RSV, MMTV or MOMLV) or SV40 virus.
  • cells which have integrated the DNA into their chromosomes may be selected by introducing one or more markers which allow selection of transfected host cells.
  • the marker may provide for prototrophy to an auxotrophic host, biocide resistance (e.g., antibiotics) or resistance to heavy metals such as copper.
  • the selectable marker gene can either be directly linked to the DNA sequences to be expressed, or introduced into the same cell by cotransformation.
  • an inducible expression system can be employed. Additional elements may also be needed for optimal synthesis of mRNA. These elements may include signal sequences, splice signals, as well as transcriptional promoters, enhancers, and termination signals.
  • a secretion signal e.g., any one of several well characterized bacterial leader peptides (e.g., pelB, phoA, or ompA), can be fused in-frame to the N terminus of a polypeptide of the invention to obtain optimal secretion of the polypeptide.
  • the term “host cell” refers to a cell that has been transformed with a vector constructed using recombinant DNA techniques and encoding at least one heterologous gene.
  • the terms “cell” and “cell culture” are used interchangeably to denote the source of protein unless it is clearly specified otherwise. In other words, recovery of protein from the “cells” may mean either from spun down whole cells, or from the cell culture containing both the medium and the suspended cells.
  • the host cell line used for protein expression is most preferably of mammalian origin; those skilled in the art are credited with ability to preferentially determine particular host cell lines which are best suited for the desired gene product to be expressed therein.
  • Exemplary host cell lines include, but are not limited to, DG44 and DUXB11 (Chinese Hamster Ovary lines, DHFR minus), HELA (human cervical carcinoma), CVI (monkey kidney line), COS (a derivative of CVI with SV40 T antigen), R1610 (Chinese hamster fibroblast) BALBC/3T3 (mouse fibroblast), PerC6 cells), HAK (hamster kidney line), SP2/0 (mouse myeloma), P3x63-Ag3.653 (mouse myeloma), BFA-1c1BPT (bovine endothelial cells), RAJI (human lymphocyte) and 293 (human kidney).
  • DG44 and DUXB11 Choinese Hamster Ovary lines, DHFR minus
  • HELA human cervical carcinoma
  • CVI monkey kidney line
  • COS a derivative of CVI with SV40 T antigen
  • R1610 Choinese hamster fibroblast
  • the polypeptides of the invention can also be expressed in non-mammalian cells such as bacteria or yeast or plant cells.
  • non-mammalian cells such as bacteria or yeast or plant cells.
  • various unicellular non-mammalian microorganisms such as bacteria can also be transformed; i.e. those capable of being grown in cultures or fermentation.
  • Bacteria, which are susceptible to transformation include members of the enterobacteriaceae, such as strains of Escherichia coli or Salmonella ; Bacillaceae, such as Bacillus subtilis ; Pneumococcus; Streptococcus , and Haemophilus influenzae .
  • the polypeptides when expressed in bacteria, the polypeptides typically become part of inclusion bodies. The polypeptides must be isolated, purified and then assembled into functional molecules.
  • Saccharomyces cerevisiae or common baker's yeast, is the most commonly used among eukaryotic microorganisms although a number of other strains are commonly available including Pichia pastoris .
  • the plasmid YRp7 for example, (Stinchcomb et al., (1979), Nature, 282:39; Kingsman et al., (1979), Gene, 7:141; Tschemper et al., (1980), Gene, 10:157) is commonly used.
  • This plasmid already contains the TRP1 gene which provides a selection marker for a mutant strain of yeast lacking the ability to grow in tryptophan, for example ATCC No. 44076 or PEP4-1 (Jones, (1977), Genetics, 85:12).
  • the presence of the trpl lesion as a characteristic of the yeast host cell genome then provides an effective environment for detecting transformation by growth in the absence of tryptophan.
  • endogenous refers to molecules (e.g. nucleic acid and/or protein molecules) that are naturally present in a cell.
  • exogenous or heterologous refers to such molecules that are not normally found in a given context, e.g., in a cell or in a polypeptide.
  • an exogenous or heterologous molecule may be introduced into a cell and are only present after manipulation of the cell, e.g., by transfection or other forms of genetic engineering or a heterologous amino acid sequence may be present in a protein in which it is not naturally found.
  • cleavage site refers to a site recognized by an enzyme. Certain enzymatic cleavage sites comprise an intracellular processing site.
  • a polypeptide has an enzymatic cleavage site cleaved by an enzyme that is activated during the clotting cascade, such that cleavage of such sites occurs at the site of clot formation.
  • Exemplary such sites include e.g., those recognized by thrombin, Factor XIa or Factor Xa.
  • Exemplary FXIa cleavage sites include, e.g, TQSFNDFTR and SVSQTSKLTR.
  • Exemplary thrombin cleavage sites include, e.g, DFLAEGGGVR, TTKIKPR, LVPRG SEQ ID NO:35) and ALRPR.
  • Other enzymatic cleavage sites are known in the art.
  • processing site refers to a type of enzymatic cleavage site in a polypeptide which is the target for enzymes that function after translation of the polypeptide. In one embodiment, such enzymes function during transport from the Golgi lumen to the trans-Golgi compartment. Intracellular processing enzymes cleave polypeptides prior to secretion of the protein from the cell. Examples of such processing sites include, e.g., those targeted by the PACE/furin (where PACE is an acronym for Paired basic Amino acid Cleaving Enzyme) family of endopeptidases.
  • Arg-[any residue]-(Lys or Arg)-Arg As used herein the “furin” family of enzymes includes, e.g., furin, PC2, PC1/Pc3, PC4, PACE4, PC5/PC6, and LPC/PC7/PC8/SPC7. Other processing sites are known in the art.
  • the phrase “subject that would benefit from administration of a polypeptide” includes subjects, such as mammalian subjects, that would benefit from administration of polypeptides of the invention, e.g., to improve hemostasis.
  • a “chimeric protein” or “fusion protein”, as used herein, refers to any protein comprised of a first amino acid sequence derived from a first source, bonded, covalently or non-covalently, to a second amino acid sequence derived from a second source, wherein the first and second source are not the same.
  • a first source and a second source that are not the same can include two different biological entities, or two different proteins from the same biological entity, or a biological entity and a non-biological entity.
  • a chimeric protein can include for example, a protein derived from at least 2 different biological sources.
  • a biological source can include any non-synthetically produced nucleic acid or amino acid sequence (e.g.
  • a synthetic source can include a protein or nucleic acid sequence produced chemically and not by a biological system (e.g. solid phase synthesis of amino acid sequences).
  • a chimeric protein can also include a protein derived from at least 2 different synthetic sources or a protein derived from at least one biological source and at least one synthetic source.
  • a chimeric protein may also comprise a first amino acid sequence derived from a first source, covalently or non-covalently linked to a nucleic acid, derived from any source or a small organic or inorganic molecule derived from any source.
  • the chimeric protein may comprise a linker molecule between the first and second amino acid sequence or between the first amino acid sequence and the nucleic acid, or between the first amino acid sequence and the small organic or inorganic molecule.
  • clotting factor refers to molecules, or analogs thereof, naturally occurring or recombinantly produced which prevent or decrease the duration of a bleeding episode in a subject. In other words, it means molecules having pro-clotting activity, i.e., are responsible for the conversion of fibrinogen into a mesh of insoluble fibrin causing the blood to coagulate or clot.
  • Clotting activity means the ability to participate in a cascade of biochemical reactions that culminates in the formation of a fibrin clot and/or reduces the severity, duration or frequency of hemorrhage or bleeding episode.
  • Hemostasis means the stopping or slowing of bleeding or hemorrhage; or the stopping or slowing of blood flow through a blood vessel or body part.
  • Hemostatic disorder means a genetically inherited or acquired condition characterized by a tendency to hemorrhage, either spontaneously or as a result of trauma, due to an impaired ability or inability to form a fibrin clot. Examples of such disorders include the hemophilias.
  • hemophilia A factor VIII deficiency
  • hemophilia B factor IX deficiency or “Christmas disease”
  • hemophilia C factor XI deficiency, mild bleeding tendency
  • Von Willebrand disease factor Xi deficiency (PTA deficiency)
  • Factor XII deficiency deficiencies or structural abnormalities in fibrinogen, prothrombin, Factor V, Factor VII, Factor X or factor XIII, Bernard-Soulier syndrome is a defect or deficiency in GPIb.
  • GPIb the receptor for vWF
  • GPIb the receptor for vWF
  • primary hemostasis primary hemostasis
  • Naegeli Glanzman and Naegeli
  • the chimeric molecules of the invention can be used prophylacticly.
  • prophylactic treatment refers to the administration of a molecule prior to a bleeding episode.
  • the subject in need of a general hemostatic agent is undergoing, or is about to undergo, surgery.
  • the chimeric protein of the invention can be administered prior to or after surgery as a prophylactic.
  • the chimeric protein of the invention can be administered during or after surgery to control an acute bleeding episode.
  • the surgery can include, but is not limited to, liver transplantation, liver resection, or stem cell transplantation
  • On-demand treatment includes treatment for a bleeding episode, hemarthrosis, muscle bleed, oral bleed, hemorrhage, hemorrhage into muscles, oral hemorrhage, trauma, trauma capitis (head trauma), gastrointestinal bleeding, intracranial hemorrhage, intra-abdominal hemorrhage, intrathoracic hemorrhage, bone fracture, central nervous system bleeding, bleeding in the retropharyngeal space, bleeding in the retroperitoneal space, or bleeding in the illiopsoas sheath.
  • the subject may be in need of surgical prophylaxis, peri-operative management, or treatment for surgery.
  • Such surgeries include, e.g., minor surgery, major surgery, tooth extraction, tonsillectomy, inguinal herniotomy, synovectomy, total knee replacement, craniotomy, osteosynthesis, trauma surgery, intracranial surgery, intra-abdominal surgery, intrathoracic surgery, or joint replacement surgery.
  • acute bleeding refers to a bleeding episode regardless of the underlying cause.
  • a subject may have trauma, uremia, a hereditary bleeding disorder (e.g., factor VII deficiency) a platelet disorder, or resistance owing to the development of antibodies to clotting factors.
  • Treat, treatment, treating refers to, e.g., the reduction in severity of a disease or condition; the reduction in the duration of a disease course; the amelioration of one or more symptoms associated with a disease or condition; the provision of beneficial effects to a subject with a disease or condition, without necessarily curing the disease or condition, the prophylaxis of one or more symptoms associated with a disease or condition.
  • the invention pertains to improved versions of factors VII, IX, and X.
  • factors VII, IX, and X are all structurally related in that in each the amino terminal end of the light chain is not amenable to the incorporation of additional moieties.
  • the amino terminal end of the heavy chain of these three clotting factors is not amenable to the incorporation of additional moieties, with the exception of cleaveable moieties, i.e., moieties linked via a cleavage site or moieties which consist of a cleaveage site.
  • chimeric clotting factor constructs of the invention were designed based on these shared properties and it will be understood that although factor VII is often shown to illustrate exemplary embodiments of the invention, the subject constructs may be made using factor VII, IX, or X.
  • factor VII is often shown to illustrate exemplary embodiments of the invention
  • the subject constructs may be made using factor VII, IX, or X.
  • FVII portion of a construct of the invention could be substituted with a FVIII, FIX or FX portion to make an enhanced version of one of these clotting factors.
  • Exemplary chimeric clotting factor constructs of the invention are set forth in the accompanying Figures. Although the Figures generally illustrate the clotting Factor as a single chain (in its zymogen form) it will be understood that the clotting factor may also be present in its active form in a construct of the invention, e.g. as a two chain, disulfide bonded form.
  • a chimeric clotting factor of the invention is expressed by a cell in active form.
  • a chimeric clotting factor is expressed in inactive form and is subsequently activated under appropriate conditions in vitro such that the active form of the clotting factor is present in the construct.
  • a chimeric clotting factor of the invention comprises a clotting factor in inactive form and the clotting factor is activated in vivo after administration.
  • an scFc scaffold can be used to produce an active form of a molecule.
  • Certain clotting factors are produced recombinantly as zymogens and, therefore, require activation during manufacturing.
  • Active forms of Factors VII, IX, and X are comprised of dimeric molecules in which the heavy and light chain are linked only by a disulfide bond.
  • a chimeric clotting factor is activated prior to administration to a subject to improve hemostasis.
  • Methods for activating clotting factors are known in the art.
  • a chimeric clotting factor of the invention is contacted with media containing CaCl 2 at a concentration of approximately 5 mM.
  • a chimeric clotting factor of the invention is secreted in active form by a cell in which it is expressed.
  • an active chimeric clotting factor is made by expressing the heavy and light chain of a clotting factor as separate polypeptides.
  • the N-terminus of the heavy chain of the clotting factor is modified to comprise an intracellular processing site which delays the activation of the clotting factor during synthesis until later in the secretory pathway, (i.e. until protein colocalizes with active processing enzymes in the trans-Golgi network), leading to greater productivity.
  • intracellular processing sites include those recognized by furin.
  • cleavage sites for this family of enzymes include an amino acid sequence comprising the motif Arg-Xaa-Lys/Arg-Arg.
  • an active construct of the invention is made in the context of an Fc fusion protein, e.g., using an scFc linker (e.g., a cscfc linker).
  • an scFc linker e.g., a cscfc linker
  • the invention pertains to processed (e.g., mature) polypeptides in which the at least one cleavage site adjacent to an scFc polypeptide linker has been cleaved such that the molecule is no longer a single polypeptide chain such that the polypeptide is comprised of at least two polypeptide chains (owing to cleavage at the enzymatic cleavage site(s) P1 and/or P2).
  • such processed polypeptides comprise a clotting factor or portion thereof linked to the second Fc moiety (i.e., the second Fc moiety when counting from the amino terminus to the carboxy terminus prior to cleavage of the polypeptide linker) which has a free amino terminus after cleavage of the polypeptide linker.
  • a clotting factor attached to the N-terminus of the second Fc moiety is catalytically active, e.g., has enzymatic activity.
  • a clotting factor attached to the N-terminus of the second Fc moiety is secreted by a cell as a zymogen requiring further enzymatic processing of the clotting factor in order to be fully activated.
  • the invention pertains to clotting factors which are secreted from cells in active or activated form without the need for further activation during processing.
  • Factor VII is generally produced recombinantly as a zymogen and requires activation during manufacturing to produce the active form for administration.
  • a polypeptide of the invention is secreted from the cell in which it is expressed in active form to improve manufacturability.
  • such clotting factors can be produced by expressing the light chain of a clotting factor and the heavy chain of a clotting factor separately in the context of an scFc molecule comprising a cscFc linker. Activation of such a construct is delayed until late in the secretory pathway during processing, e.g., when the protein colocalizes with active processing enzymes in the trans-Golgi apparatus.
  • a clotting factor of the invention is a mature form of Factor VII or a variant thereof.
  • Factor VII FVII, F7; also referred to as Factor 7, coagulation factor VII, serum factor VII, serum prothrombin conversion accelerator, SPCA, proconvertin and eptacog alpha
  • FVII includes a Gla domain, two EGF domains (EGF-1 and EGF-2), and a serine protease domain (or peptidase S1 domain) that is highly conserved among all members of the peptidase S1 family of serine proteases, such as for example with chymotrypsin.
  • FVII occurs as a single chain zymogen, an activated zymogen-like two-chain polypeptide and a fully activated two-chain form.
  • a “zymogen-like” protein or polypeptide refers to a protein that has been activated by proteolytic cleavage, but still exhibits properties that are associated with a zymogen, such as, for example, low or no activity, or a conformation that resembles the conformation of the zymogen form of the protein.
  • the two-chain activated form of FVII when it is not bound to tissue factor, the two-chain activated form of FVII is a zymogen-like protein; it retains a conformation similar to the uncleaved FVII zymogen, and, thus, exhibits very low activity.
  • the two-chain activated form of FVII Upon binding to tissue factor, the two-chain activated form of FVII undergoes conformational change and acquires its full activity as a coagulation factor.
  • Exemplary FVII variants include those with increased specific activity, e.g., mutations that increase the activity of FVII by increasing its enzymatic activity (Kcat or Km).
  • Such variants have been described in the art and include, e.g., mutant forms of the molecule as described for example in Persson et al. 2001. PNAS 98:13583; Petrovan and Ruf. 2001. J. Biol. Chem. 276:6616; Persson et al. 2001 J. Biol. Chem. 276:29195; Soejima et al. 2001. J. Biol. Chem. 276:17229; Soejima et al. 2002. J. Biol. Chem. 247:49027.
  • a variant form of FVII includes the mutations Exemplary mutations include V158D-E296V-M298Q.
  • a variant form of FVII includes a replacement of amino acids 608-619 (LQQSRKVGDSPN, corresponding to the 170-loop) from the FVII mature sequence with amino acids EASYPGK from the 170-loop of trypsin.
  • High specific activity variants of FIX are also known in the art. Fir example, Simioni et al. (2009 N. E. Journal of Medicine 361:1671) describe an R338L mutation. Chang et al. (1988 JBC 273:12089) and Pierri et al.
  • FVIIa Full activation, which occurs upon conformational change from a zymogen-like form, occurs upon binding to is co-factor tissue factor. Also, mutations can be introduced that result in the conformation change in the absence of tissue factor. Hence, reference to FVIIa includes both two-chain forms thereof, the zymogen-like form and the fully activated two-chain form.
  • a clotting factor of the invention is a mature form of Factor VIII or a variant thereof.
  • FVIII functions in the intrinsic pathway of blood coagulation as a cofactor to accelerate the activation of factor X by factor IXa, a reaction that occurs on a negatively charged phospholipid surface in the presence of calcium ions.
  • FVIII is synthesized as a 2351 amino acid single-chain polypeptide having the domain structure A1-A2-B-A3-C1-C2. Wehar, G. A. et al., Nature 312:337-342 (1984) and Toole, J. J. et al., Nature 312:342-347 (1984).
  • FVIII The domain structure of FVIII is identical to that of the homologous coagulation factor, factor V (FV). Kane, W. H. et al., PNAS (USA) 83:6800-6804 (1986) and Jenny, R. J. et al., PNAS (USA) 84:4846-4850 (1987).
  • the FVIII A-domains are 330 amino acids and have 40% amino acid identity with each other and to the A-domain of FV and the plasma copper-binding protein ceruloplasmin. Takahashi, N. et al., PNAS (USA) 81:390-394 (1984).
  • Each C-domain is 150 amino acids and exhibits 40% identity to the C-domains of FV, and to proteins that bind glycoconjugates and negatively charged phospholipids. Stubbs, J. D. et al., PNAS (USA) 87:8417-8421 (1990).
  • the FVIII B-domain is encoded by a single exon and exhibits little homology to any known protein including FV B-domain. Gitschier, J. et al., Nature 312:326-330 (1984) and Cripe, L. D. et al., Biochemistry 31:3777-3785 (1992).
  • FVIII is secreted into plasma as a heterodimer of a heavy chain (domains A1-A2-B) and a light chain (domains A3-C1-C2) associated through a noncovalent divalent metal ion linkage between the A1- and A3-domains.
  • FVIII is stabilized by binding to von Willebrand factor. More specifically, the FVIII light chain is bound by noncovalent interactions to a primary binding site in the amino terminus of von Willebrand factor.
  • FVIII Upon proteolytic activation by thrombin, FVIII is activated to a heterotrimer of 2 heavy chain fragments (A1, a 50 kDa fragment, and A2, a 43 kDa fragment) and the light chain (A3-C1-C2, a 73 kDa chain).
  • the active form of FVIII (FVIIIa) thus consists of an A1-subunit associated through the divalent metal ion linkage to a thrombin-cleaved A3-C1-C2 light chain and a free A2 subunit associated with the A1 domain through an ion association.
  • a clotting factor comprises a B-domain deleted version of factor VIII.
  • B-domain of Factor VIII is the same as the B-domain known in the art that is defined by internal amino acid sequence identity and sites of proteolytic cleavage, e.g., residues Ser741-Arg1648 of full-length human Factor VIII.
  • the other human Factor VIII domains are defined by the following amino acid residues: A1, residues Ala1-Arg372; A2, residues Ser373-Arg740; A3, residues Ser1690-Asn2019; C 1 , residues Lys2020-Asn2172; C2, residues Ser2173-Tyr2332.
  • the A3-C1-C2 sequence includes residues Ser1690-Tyr2332.
  • the remaining sequence, residues Glu1649-Arg1689, is usually referred to as the a3 acidic region.
  • the locations of the boundaries for all of the domains, including the B-domains, for porcine, mouse and canine Factor VIII are also known in the art.
  • the B domain of Factor VIII is deleted (“B-domain-deleted factor VIII” or “BDD FVIII”).
  • BDD FVIII is REFACTO® (recombinant BDD FVIII with 5743/Q1638 fusion), which is known in the art.
  • a “B-domain-deleted Factor VIII” may have the full or partial deletions disclosed in U.S. Pat. Nos. 6,316,226, 6,346,513, 7,041,635, 5,789,203, 6,060,447, 5,595,886, 6,228,620, 5,972,885, 6,048,720, 5,543,502, 5,610,278, 5,171,844, 5,112,950, 4,868,112, and 6,458,563, each of which is incorporated herein by reference in its entirety.
  • a B-domain-deleted Factor VIII sequence of the present invention comprises any one of the deletions disclosed at col. 4, line 4 to col. 5, line 28 and examples 1-5 of U.S. Pat. No. 6,316,226 (also in U.S.
  • a B-domain deleted Factor VIII is the 5743/Q1638 B-domain deleted Factor VIII (SQ version Factor VIII) (e.g., Factor VIII having a deletion from amino acid 744 to amino acid 1637, e.g., Factor VIII having amino acids 1-743 and amino acids 1638-2332 of SEQ ID NO: 6, i.e., SEQ ID NO: 2).
  • a B-domain-deleted Factor VIII of the present invention has a deletion disclosed at col. 2, lines 26-51 and examples 5-8 of U.S. Pat. No. 5,789,203 (also U.S. Pat. Nos.
  • a B-domain-deleted Factor VIII has a deletion described in col. 1, lines 25 to col. 2, line 40 of U.S. Pat. No. 5,972,885; col. 6, lines 1-22 and example 1 of U.S. Pat. No. 6,048,720; col. 2, lines 17-46 of U.S. Pat. No. 5,543,502; col. 4, line 22 to col. 5, line 36 of U.S. Pat. No. 5,171,844; col. 2, lines 55-68, FIG. 2 , and example 1 of U.S. Pat. No. 5,112,950; col. 2, line 2 to col. 19, line 21 and table 2 of U.S. Pat. No.
  • a B-domain-deleted Factor VIII has a deletion of most of the B domain, but still contains amino-terminal sequences of the B domain that are essential for in vivo proteolytic processing of the primary translation product into two polypeptide chain, as disclosed in WO 91/09122, which is incorporated herein by reference in its entirety.
  • a B-domain-deleted Factor VIII is constructed with a deletion of amino acids 747-1638, i.e., virtually a complete deletion of the B domain. Hoeben R. C., et al. J. Biol. Chem. 265 (13): 7318-7323 (1990), incorporated herein by reference in its entirety.
  • a B-domain-deleted Factor VIII may also contain a deletion of amino acids 771-1666 or amino acids 868-1562 of Factor VIII. Meulien P., et al. Protein Eng. 2(4): 301-6 (1988), incorporated herein by reference in its entirety.
  • Additional B domain deletions that are part of the invention include: deletion of amino acids 982 through 1562 or 760 through 1639 (Toole et al., Proc. Natl. Acad. Sci. U.S.A . (1986) 83, 5939-5942)), 797 through 1562 (Eaton, et al. Biochemistry (1986) 25:8343-8347)), 741 through 1646 (Kaufman (PCT published application No. WO 87/04187)), 747-1560 (Sarver, et al., DNA (1987) 6:553-564)), 741 though 1648 (Pasek (PCT application No.
  • the invention pertains to a targeted version of FVIII, wherein the targeting (i) specifically binds to platelets, (ii) is not interposed between the light and heavy chains of the clotting factor, and wherein said chimeric clotting factor exhibits increased generation of thrombin in the presence of platelets as compared to an appropriate control lacking the at least one targeting moiety.
  • a clotting factor of the invention is a mature form of Factor IX or a variant thereof.
  • Factor IX circulates as a 415 amino acid, single chain plasma zymogen (A. Vysotchin et al., J. Biol. Chem. 268, 8436 (1993)).
  • the zymogen of FIX is activated by FXIa or by the tissue factor/FVIIa complex. Specific cleavages between arginine-alanine 145-146 and arginine-valine 180-181 result in a light chain and a heavy chain linked by a single disulfide bond between cysteine 132 and cysteine 289 (S.
  • FIX FIX-dependent blood clotting proteins
  • FVII vitamin K-dependent blood clotting proteins
  • FX and protein C B. Furie and B. Furie, supra.
  • the approximately 45 amino acids of the amino terminus comprise the gamma-carboxyglutamic acid, or gla, domain.
  • EGF epidermal growth factor homology domains
  • an activation peptide an activation peptide
  • the catalytic “heavy chain” which is a member of the serine protease family (A. Vysotchin et al., J. Biol. Chem. 268, 8436 (1993); S. Spitzer et al., Biochemical Journal 265, 219 (1990); H. Brandstetter et al., Proc. Natl. Acad Sci. USA 92, 9796 (1995)).
  • a clotting factor of the invention is a mature form of Factor X.
  • Factor X is a vitamin-K dependent glycoprotein of a molecular weight of 58.5 kDa, which is secreted from liver cells into the plasma as a zymogen.
  • Initially factor X is produced as a prepropeptide with a signal peptide consisting in total of 488 amino acids.
  • the signal peptide is cleaved off by signal peptidase during export into the endoplasmatic reticulum, the propeptide sequence is cleaved off after gamma carboxylation took place at the first 11 glutamic acid residues at the N-terminus of the mature N-terminal chain.
  • a further processing step occurs by cleavage between Arg182 and Ser183.
  • This processing step also leads concomitantly to the deletion of the tripeptide Arg180-Lys181-Arg182.
  • the resulting secreted factor X zymogen consists of an N-terminal light chain of 139 amino acids (M, 16,200) and a C-terminal heavy chain of 306 amino acids (M, 42,000) which are covalently linked via a disulfide bridge between Cys172 and Cys342.
  • Further posttranslational processing steps include the .beta.-hydroxylation of Asp103 as well as N- and O-type glycosylation.
  • the present invention may also employ precursor truncated forms thereof that have activity, allelic variants and species variants, variants encoded by splice variants, and other variants, including polypeptides that have at least 40%, 45%, 50%, 55%, 65%, 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99% or more sequence identity to the mature form of the clotting factor and which retain the ability to promote clot formation.
  • modified FVII polypeptides and variants thereof which retain at least one activity of a FVII, such as TF binding, factor X binding, phospholipid binding, and/or coagulant activity of a FVII may be employed.
  • the activity can be altered, such as reduced or increased, as compared to a wild-type clotting factor so long as the level of activity retained is sufficient to yield a detectable effect.
  • Exemplary sequences of clotting factors that can be used in the constructs of the invention are found in the accompanying sequence listing.
  • modified polypeptides include, but are not limited to, tissue-specific isoforms and allelic variants thereof, synthetic molecules prepared by translation of nucleic acids, proteins generated by chemical synthesis, such as syntheses that include ligation of shorter polypeptides, through recombinant methods, proteins isolated from human and non-human tissue and cells, chimeric polypeptides and modified forms thereof.
  • the instant clotting factors may also consist of fragments or portions of WT molecules that are of sufficient length or include appropriate regions to retain at least one activity (upon activation if needed) of a full-length mature polypeptide.
  • Exemplary clotting factor variants are known in the art.
  • Gla domain refers to the conserved membrane binding motif which is present In vitamin K-dependent proteins, such as prothrombin, coagulation factors VII, IX and X, proteins C, S, and Z. These proteins require vitamin K for the posttranslational synthesis of g-carboxyglutamic acid, an amino acid clustered in the N-terminal Gla domain of these proteins. All glutamic residues present in the domain are potential carboxylation sites and many of them are therefore modified by carboxylation. In the presence of calcium ions, the Gla domain interacts with phospholipid membranes that include phosphatidylserine. The Gla domain also plays a role in binding to the FVIIa cofactor, tissue factor (TF).
  • TF tissue factor
  • the Gla domain of FVIIa is loaded with seven Ca2+ ions, projects three hydrophobic side chains in the direction of the cell membrane for interaction with phospholipids on the cell surface, and has significant contact with the C-terminal domain of TF.
  • Gla domain of factor VII comprises the uncommon amino acid—carboxyglutamic acid (Gla), which plays a vital role in the binding of clotting factors to negatively charged phospholipid surfaces.
  • the GLA domain is responsible for the high-affinity binding of calcium ions. It starts at the N-terminal extremity of the mature form of proteins and ends with a conserved aromatic residue. A conserved Gla-x(3)-Gla-x-Cys motif is found in the middle of the domain which seems to be important for substrate recognition by the carboxylase.
  • Gla domain has been found to be important in the sequence of events whereby the protease domain of FVIIa initiates contact with sTF (Biochemical and Biophysical Research Communications. 2005. 337:1276).
  • clearance of clotting factors may be significantly mediated through Gla interactions, e.g., on liver cells and clearance receptors, e.g., EPCR.
  • targeted clotting factors are modified to lack a Gla domain.
  • the Gla domain is responsible for mediating clearance of clotting factors via multiple pathways, such as binding to liver cells, clearance receptors such as EPCR, etc. Thus, eliminating the Gla domain has beneficial effects on half life of clotting factors.
  • Gla domain is also generally required for activity by localizing clotting factors to sites of coagulation, the inclusion of a platelet targeting domain moiety targets the Gla deleted clotting factor to platelets.
  • a clotting factor of the invention comprises a targeting moiety and lacks a Gla domain.
  • the Gla domain is present at the amino terminus of the light chain and consists of amino acids 1-35.
  • Gla domains of exemplary clotting factors are indicated in the accompanying sequence listing. This domain can be removed using standard molecular biology techniques, replaced with a targeting domain, and the modified light chain incorporated into a construct of the invention.
  • a cleavage site may be introduced into constructs lacking a Gla domain to facilitate activation of the molecule.
  • such a cleavage site may be introduced between the amino acids that are cleaved when the clotting factor is activated (e.g., between amino acids 152 and 153 in the case of Factor VII).
  • Exemplary clotting factors lacking a Gla domain are shown in the accompanying figures
  • a cleavage site may be introduced into constructs lacking a Gla domain to facilitate activation of the molecule.
  • such a cleavage site may be introduced between the amino acids that are cleaved when the clotting factor is activated (e.g., between amino acids 152 and 153 in the case of Factor VII).
  • Exemplary clotting factors lacking a Gla domain are shown in the accompanying figures.
  • Exemplary clotting factors are those of mammalian, e.g., human, origin.
  • sequences of exemplary clotting factors are presented in the accompanying sequence listing, e.g., alone or in the context of a chimeric clotting factor construct.
  • a clotting factor of the invention is targeted to platelets to enhance its efficacy by localizing the clotting factor to the site of coagulation using a “targeting moiety” which binds to a target molecule expressed on platelets.
  • a targeting moiety which binds to a target molecule expressed on platelets.
  • the targeted molecules are not expressed on cells or tissues other than platelets, i.e., the targeting moieties specifically bind to platelets.
  • receptors/conformations found on resting platelets are targeted. By doing so, sites for coagulation could be primed for enhanced efficacy. Targeting such molecule may also extend half life of the clotting factor and/or prevent clearance. Examples of such targets include GpIb of the GpIb/V/IX complex, and GpVI and nonactive form of GPIIb/IIIa.
  • receptors/conformations only found on activated platelets are targeted in order to localize the clotting factor to site of active coagulation.
  • targets include, e.g., the active form of GpIIb/IIIa as well as CD62P.
  • a polypeptide of the invention comprises a “targeting moiety” which has affinity for and binds to platelets.
  • a targeting moiety binds to the GPIb complex, e.g, GPIb-alpha.
  • GPIb-alpha examples include the peptides PS4, OS1, and OS2 which bind to both active and nonactive platelets (Benard et al. 2008 Biochemistry 47:4674);
  • a targeting moiety binds to the active conformation of GPIIbIIIa. Examples of such targeting moieties inlcude SCE5 and MB9 variable regions which bind active platelets only (Schwarz et al.
  • a targeting moiety binds to both the active/nonactive conformation of GPIIbIIIa.
  • An example of such a targeting moiety is the variable region of the AP3 antibody (Peterson et al. 2003. Hemostasis, Thrombosis, and Vascular Biology 101:937; WO 2010115866).
  • Other targets and targeting moieties are known in the art.
  • Another version of factor IX (the triple mutant V86A/E277A/R338A) with augmented clotting activities has been described by Lin et al. 2010. Journal of Thrombosis and Hemostasis 8: 1773). The contents of these references are incorporated herein by this reference.
  • the chimeric clotting factors of the invention can comprise one or more than one targeting moiety. Exemplary configurations are set forth in the accompanying Figures. Additionally, two or more targeting moieties may be linked to each other (e.g., via a spacer) in series, and the tandem array operably linked to a construct of the invention. When two or more targeting moieties are present in a chimeric clotting factor of the invention, the moieties may be the same or different.
  • a targeting moiety is fused to a chimeric clotting factor of the invention by a cleaveable linker which may be cleaved to remove the targeting moiety at the site of a clot.
  • a targeting moiety is not attached via a cleaveable linker and, therefore, is not cleaved at the site of a clot.
  • the targeting moiety is located on the N- or C-terminus of factor VIII. In another embodiment, a targeting moiety is located on the C-terminus of FVII, FIX, FX, or the C-terminus of either or both chains of FVIIa, FIXa, of FXa. In embodiments in which an Fc region or portion thereof is employed, the targeting moiety may be positioned at the N or C terminus of the second Fc chain, or the C-terminus of either or both Fc chains.
  • a targeting moiety is not genetically fused directly to a construct, but rather is linked via a spacer or a chemical bond to the construct.
  • targeting moieties may be attached to a construct of the invention by formation of a bond between the targeting moiety and an Fc moiety of a construct, where the targeting moiety comprises a first functional group and the Fc moiety comprises a second functional group, and where the first and second functional groups are capable of reacting with each other to form a chemical bond (see, e.g., U.S. Pat. No. 7,381,408).
  • a polypeptide of the invention comprises at least one of an antigen binding site (e.g., an antigen binding site of an antibody, antibody variant, or antibody fragment), a polypeptide, a receptor binding portion of ligand, or a ligand binding portion of a receptor which specifically binds to platelets, e.g., resting or activated platelets.
  • an antigen binding site e.g., an antigen binding site of an antibody, antibody variant, or antibody fragment
  • a polypeptide e.g., a receptor binding portion of ligand, or a ligand binding portion of a receptor which specifically binds to platelets, e.g., resting or activated platelets.
  • exemplary targeting moieties include scFv molecules or peptides which bind to molecules to be targeted. Examples of targeting moieties are found in the instant examples and Figures. Other molecules useful as targeting moieties can readily be selected by one of skill in the art based upon the teaching herein.
  • a polypeptide of the invention comprises at least one antigen binding portion (e.g., binding site) of an antibody.
  • the antigen binding portion targets the polypeptide to platelets
  • a polypeptide of the invention may comprise an antigen binding portion.
  • antigen-binding portion refers to a polypeptide fragment of an immunoglobulin, antibody, or antibody variant which binds antigen or competes with intact antibody (i.e., with the intact antibody from which they were derived) for antigen binding (i.e., specific binding).
  • said antigen binding portions can be derived from any of the antibodies or antibody variants described supra.
  • Antigen binding portions can be produced by recombinant or biochemical methods that are well known in the art. Exemplary antigen-binding portions include Fv, Fab, Fab′, and (Fab′) 2 as well as scFv molecules.
  • a chimeric clotting factor of the invention may comprise a binding site from single chain binding molecule (e.g., a single chain variable region or scFv).
  • single chain binding molecule e.g., a single chain variable region or scFv.
  • Techniques described for the production of single chain antibodies can be adapted to produce single chain binding molecules.
  • Single chain antibodies are formed by linking the heavy and light chain fragments of the Fv region via an amino acid bridge, resulting in a single chain antibody. Techniques for the assembly of functional Fv fragments in E coli may also be used (Skerra et al., Science 242:1038-1041 (1988)).
  • a polypeptide of the invention comprises one or more binding sites or regions comprising or consisting of a single chain variable region sequence (scFv).
  • Single chain variable region sequences comprise a single polypeptide having one or more antigen binding sites, e.g., a V L domain linked by a flexible linker to a V H domain.
  • the VL and/or VH domains may be derived from any of the antibodies or antibody variants described supra.
  • ScFv molecules can be constructed in a V H -linker-V L orientation or V L -linker-V H orientation.
  • the flexible linker that links the V L and V H domains that make up the antigen binding site preferably comprises from about 10 to about 50 amino acid residues.
  • the polypeptide linker is a gly-ser polypeptide linker.
  • An exemplary gly/ser polypeptide linker is of the formula (Gly4Ser)n, wherein n is a positive integer (e.g., 1, 2, 3, 4, 5, or 6).
  • Other polypeptide linkers are known in the art.
  • Antibodies having single chain variable region sequences e.g. single chain Fv antibodies
  • methods of making said single chain antibodies are well-known in the art (see e.g., Ho et al. 1989. Gene 77:51; Bird et al. 1988 Science 242:423; Pantoliano et al. 1991 . Biochemistry 30:10117; Milenic et al. 1991 . Cancer Research 51:6363; Takkinen et al. 1991 . Protein Engineering 4:837).
  • a scFv molecule employed in a polypeptide of the invention is a stabilized scFv molecule.
  • the stabilized cFv molecule may comprise a scFv linker interposed between a V H domain and a V L domain, wherein the V H and V L domains are linked by a disulfide bond between an amino acid in the V H and an amino acid in the V L domain.
  • the stabilized scFv molecule may comprise a scFv linker having an optimized length or composition.
  • the stabilized scFv molecule may comprise a V H or V L domain having at least one stabilizing amino acid substitution(s).
  • a stabilized scFv molecule may have at least two of the above listed stabilizing features.
  • Stabilized scFv molecules have improved protein stability or impart improved protein stability to the polypeptide to which it is operably linked.
  • Preferred scFv linkers of the invention improve the thermal stability of a polypeptide of the invention by at least about 2° C. or 3° C. as compared to a conventional polypeptide Comparisons can be made, for example, between the scFv molecules of the invention.
  • the stabilized scFv molecule comprises a (Gly 4 Ser) 4 scFv linker and a disulfide bond which links V H amino acid 44 and V L amino acid 100.
  • Other exemplary stabilized scFv molecules which may be employed in the polypeptides of the invention are described in U.S. Provisional Patent Application No. 60/873,996, filed on Dec. 8, 2006 or U.S. patent application Ser. No. 11/725,970, filed on Mar. 19, 2007, each of which is incorporated herein by reference in its entirety.
  • Polypeptides of the invention may comprise a variable region or portion thereof (e.g. a VL and/or VH domain) derived from an antibody using art recognized protocols.
  • the variable domain may be derived from antibody produced in a non-human mammal, e.g., murine, guinea pig, primate, rabbit or rat, by immunizing the mammal with the antigen or a fragment thereof. See Harlow & Lane, supra, incorporated by reference for all purposes.
  • the immunoglobulin may be generated by multiple subcutaneous or intraperitoneal injections of the relevant antigen (e.g., purified tumor associated antigens or cells or cellular extracts comprising such antigens) and an adjuvant. This immunization typically elicits an immune response that comprises production of antigen-reactive antibodies from activated splenocytes or lymphocytes.
  • variable region may be derived from polyclonal antibodies harvested from the serum of an immunized mammal, it is often desirable to isolate individual lymphocytes from the spleen, lymph nodes or peripheral blood to provide homogenous preparations of monoclonal antibodies (MAbs) from which the desired variable region is derived.
  • MAbs monoclonal antibodies
  • Rabbits or guinea pigs are typically used for making polyclonal antibodies.
  • Mice are typically used for making monoclonal antibodies.
  • Monoclonal antibodies can be prepared against a fragment by injecting an antigen fragment into a mouse, preparing “hybridomas” and screening the hybridomas for an antibody that specifically binds to the antigen.
  • the relatively short-lived, or mortal, lymphocytes from the mouse which has been injected with the antigen are fused with an immortal tumor cell line (e.g. a myeloma cell line), thus, producing hybrid cells or “hybridomas” which are both immortal and capable of producing the antibody genetically encoded by the B cell.
  • an immortal tumor cell line e.g. a myeloma cell line
  • hybrid cells or “hybridomas” which are both immortal and capable of producing the antibody genetically encoded by the B cell.
  • the resulting hybrids are segregated into single genetic strains by selection, dilution, and regrowth with each individual strain comprising specific genes for the formation of a single antibody. They produce antibodies which are homogeneous against a desired antigen and, in reference to their pure genetic parentage, are termed “monoclonal”.
  • Hybridoma cells thus prepared are seeded and grown in a suitable culture medium that preferably contains one or more substances that inhibit the growth or survival of the unfused, parental myeloma cells.
  • suitable culture medium that preferably contains one or more substances that inhibit the growth or survival of the unfused, parental myeloma cells.
  • reagents, cell lines and media for the formation, selection and growth of hybridomas are commercially available from a number of sources and standardized protocols are well established.
  • culture medium in which the hybridoma cells are growing is assayed for production of monoclonal antibodies against the desired antigen.
  • the binding specificity of the monoclonal antibodies produced by hybridoma cells is determined by immunoprecipitation or by an in vitro assay, such as a radioimmunoassay (RIA) or enzyme-linked immunosorbent assay (ELISA).
  • RIA radioimmunoassay
  • ELISA enzyme-linked immunosorbent assay
  • the clones may be subcloned by limiting dilution procedures and grown by standard methods (Goding, Monoclonal Antibodies: Principles and Practice , pp 59-103 (Academic Press, 1986)).
  • the monoclonal antibodies secreted by the subclones may be separated from culture medium, ascites fluid or serum by conventional purification procedures such as, for example, affinity chromatography (e.g., protein-A, protein-G, or protein-L affinity chromatography), hydroxylapatite chromatography, gel electrophoresis, or dialysis.
  • affinity chromatography e.g., protein-A, protein-G, or protein-L affinity chromatography
  • hydroxylapatite chromatography e.g., hydroxylapatite chromatography
  • gel electrophoresis e.g., electrophoresis, or dialysis.
  • antibodies may be screened for binding to platelets of a specific activation state or to a specific region or desired fragment of the antigen without binding to other nonoverlapping fragments of the antigen.
  • the latter screening can be accomplished by determining binding of an antibody to a collection of deletion mutants of the antigen and determining which deletion mutants bind to the antibody. Binding can be assessed, for example, by Western blot or ELISA. The smallest fragment to show specific binding to the antibody defines the epitope of the antibody.
  • epitope specificity can be determined by a competition assay is which a test and reference antibody compete for binding to the antigen. If the test and reference antibodies compete, then they bind to the same epitope or epitopes sufficiently proximal such that binding of one antibody interferes with binding of the other.
  • DNA encoding the desired monoclonal antibody or binding site thereof may be readily isolated and sequenced using any of the conventional procedures described supra for the isolation of constant region domain sequences (e.g., by using oligonucleotide probes that are capable of binding specifically to genes encoding the heavy and light chains of murine antibodies).
  • the isolated and subcloned hybridoma cells serve as a preferred source of such DNA. More particularly, the isolated DNA (which may be synthetic as described herein) may be used to clone the desired variable region sequences for incorporation in the polypeptides of the invention.
  • the binding site is derived from a fully human antibody.
  • Human or substantially human antibodies may be generated in transgenic animals (e.g., mice) that are incapable of endogenous immunoglobulin production (see e.g., U.S. Pat. Nos. 6,075,181, 5,939,598, 5,591,669 and 5,589,369, each of which is incorporated herein by reference).
  • transgenic animals e.g., mice
  • transgenic animals e.g., mice
  • 6,075,181, 5,939,598, 5,591,669 and 5,589,369 each of which is incorporated herein by reference.
  • transfer of a human immunoglobulin gene array to such germ line mutant mice will result in the production of human antibodies upon antigen challenge.
  • Another preferred means of generating human antibodies using SCID mice is disclosed in U.S. Pat. No. 5,811,524 which is incorporated herein by reference. It will be appreciated that the genetic material associated with these human antibodies may also be isolated and manipulated as described herein
  • the polypeptides of the invention may comprise antigen binding sites, or portions thereof, derived from modified forms of antibodies.
  • modified forms include, e.g., minibodies, diabodies, triabodies, nanobodies, camelids, Dabs, tetravalent antibodies, intradiabodies (e.g., Jendreyko et al. 2003. J. Biol. Chem. 278:47813), fusion proteins (e.g., antibody cytokine fusion proteins, proteins fused to at least a portion of an Fc receptor), and bispecific antibodies.
  • Other modified antibodies are described, for example in U.S. Pat. No.
  • a chimeric clotting factor of the invention comprises an antigen binding site or region which is a diabody or an antigen binding site derived therefrom.
  • Diabodies are dimeric, tetravalent molecules each having a polypeptide similar to scFv molecules, but usually having a short (e.g., less than 10 and preferably 1-5) amino acid residue linker connecting both variable domains, such that the V L and V H domains on the same polypeptide chain cannot interact. Instead, the V L and V H domain of one polypeptide chain interact with the V H and V L domain (respectively) on a second polypeptide chain (see, for example, WO 02/02781).
  • a polypeptide of the invention comprises a diabody which is operably linked to the N-terminus and/or C-terminus of at least one genetically-fused Fc region (i.e., scFc region).
  • a polypeptide of the invention comprises a single domain binding molecule (e.g. a single domain antibody) as a targeting moiety.
  • exemplary single domain molecules include an isolated heavy chain variable domain (V H ) of an antibody, i.e., a heavy chain variable domain, without a light chain variable domain, and an isolated light chain variable domain (V L ) of an antibody, i.e., a light chain variable domain, without a heavy chain variable domain.
  • Exemplary single-domain antibodies employed in the binding molecules of the invention include, for example, the Camelid heavy chain variable domain (about 118 to 136 amino acid residues) as described in Hamers-Casterman, et al., Nature 363:446-448 (1993), and Dumoulin, et al., Protein Science 11:500-515 (2002).
  • Other exemplary single domain antibodies include single VH or VL domains, also known as Dabs® (Domantis Ltd., Cambridge, UK).
  • Yet other single domain antibodies include shark antibodies (e.g., shark Ig-NARs).
  • V-NARs comprise a homodimer of one variable domain (V-NAR) and five C-like constant domains (C-NAR), wherein diversity is concentrated in an elongated CDR3 region varying from 5 to 23 residues in length.
  • C-NAR C-like constant domains
  • VHH the heavy chain variable region
  • VHH variable regions The main differences between camelid VHH variable regions and those derived from conventional antibodies (VH) include (a) more hydrophobic amino acids in the light chain contact surface of VH as compared to the corresponding region in VHH, (b) a longer CDR3 in VHH, and (c) the frequent occurrence of a disulfide bond between CDR1 and CDR3 in VHH.
  • Methods for making single domain binding molecules are described in U.S. Pat. Nos. 6,005,079 and 6,765,087, both of which are incorporated herein by reference.
  • Exemplary single domain antibodies comprising VHH domains include Nanobodies® (Ablynx NV, Ghent, Belgium).
  • Exemplary antibodies from which binding sites can be derived for use in the binding molecules of the invention are known in the art.
  • Examples of such targeting moieties inlcude SCE5 and MB9 variable regions which bind active platelets only (Schwarz et al. 2004 FASEB Journal express article 10.1096/fj.04-1513fje; Schwarz et al. 2006 Circulation Research. 99:25-33; U.S. Patent publication 20070218067).
  • a targeting moiety binds to both the active/nonactive conformation of GPIIbIIIa.
  • An example of such a targeting moiety is the variable region of the AP3 antibody (Peterson et al. 2003. Hemostasis, Thrombosis, and Vascular Biology 101:937; WO 2010115866).
  • the polypeptides of the invention comprise one or more platelet binding sites derived from a non-immunoglobulin binding molecule.
  • non-immunoglobulin binding molecules are binding molecules whose binding sites comprise a portion (e.g., a scaffold or framework) which is derived from a polypeptide other than an immunoglobulin, but which may be engineered (e.g., mutagenized) to confer a desired binding specificity to a platelet target
  • binding molecules comprising binding sites not derived from antibody molecules include receptor binding sites and ligand binding sites which bind to platelets.
  • Non-immunoglobulin binding molecules may be identified by selection or isolation of a target-binding variant from a library of binding molecules having artificially diversified binding sites. Diversified libraries can be generated using completely random approaches (e.g., error-prone PCR, exon shuffling, or directed evolution) or aided by art-recognized design strategies. For example, amino acid positions that are usually involved when the binding site interacts with its cognate target molecule can be randomized by insertion of degenerate codons, trinucleotides, random peptides, or entire loops at corresponding positions within the nucleic acid which encodes the binding site (see e.g., U.S. Pub. No. 20040132028).
  • the location of the amino acid positions can be identified by investigation of the crystal structure of the binding site in complex with the target molecule.
  • Candidate positions for randomization include loops, flat surfaces, helices, and binding cavities of the binding site.
  • amino acids within the binding site that are likely candidates for diversification can be identified using techniques known in the art.
  • the diversified library may then be subjected to a selection or screening procedure to obtain binding molecules with the desired binding characteristics, e.g. specific binding platelets using methods known in the art. Selection can be achieved by art-recognized methods such as phage display, yeast display, or ribosome display.
  • molecules known in the art to bind to platelets may be employed in the constructs of the invention. For example, peptides which bind to GPIba as described in the art (e.g., PS4, 0S1, or 0S2) may be used (Benard et al. 2008 . Biochemistry 47:4674-4682).
  • Clotting factors given for bypass therapy are efficacious when given in the activated form, since exogenous clotting factors are often not activated with sufficient kinetics to be effective. However, they are also rapidly inactivated by endogenous pathways (e.g., by antithrombin III or TFPI), leading to clearance of the active form and a short effective half life.
  • a chimeric clotting factor of the invention is “activatable.” Such activatable constructs circulate as an enhanced zymogen with a longer half life, but can be readily cleaved at the site of clotting when necessary.
  • an activatable construct of the invention comprises a cleavable linker comprising, e.g., a factor XIa, Xa, or thrombin cleavage site (which is cleaved by factor XIa, Xa, or thrombin, respectively) leading to formation of the active form of the clotting factor at the site of a clot.
  • a factor FXIa cleavage sites include, e.g., TQSFNDFTR and SVSQTSKLTR.
  • Exemplary thrombin cleavage sites include, e.g., DFLAEGGGVR, TTKIKPR, and a sequence comprising or consisting of ALRPR (e.g. ALRPRVVGGA)).
  • the cleavable linker may be flanked on one or more sides (upstream, downstream or both) by a spacer moiety.
  • the cleavable linker is interposed between the light chain and heavy chain of the clotting factor. In another embodiment, the cleavable linker is not interposed between the light chain and heavy chain of the clotting factor. In one embodiment, the cleavable linker is located amino terminal to the heavy chain.
  • Some embodiments of the invention comprise a scaffold moiety, which can be selected from, e.g., a protein moiety, cscFc region, a Fc moiety, albumin, XTEN, etc.
  • the scaffold is a protein moiety.
  • a moiety may comprise a complete protein or a portion thereof, or a synthetic molecule.
  • Preferred protein moieties are of a sufficient molecular size that they improve the half life of a chimeric clotting factor of the invention when incorporated into a construct.
  • an artificial protein, XTEN may be included in a construct as a scaffold (Schellenberger et al. 2009. 27:1186).
  • albumin e.g., human serum albumin
  • serum albumin for example, HSA
  • HSA serum albumin
  • the invention provides for polypeptides comprising at least one genetically fused Fc region or portion thereof within a single polypeptide chain (i.e., polypeptides comprising a single-chain Fc (scFc) region) in one embodiment, comprising a cscFc.
  • polypeptides comprising at least one genetically fused Fc region or portion thereof within a single polypeptide chain (i.e., polypeptides comprising a single-chain Fc (scFc) region) in one embodiment, comprising a cscFc.
  • a chimeric clotting factor which comprises a clotting factor selected from the group consisting of FVII, FIX and FX and a targeting moiety which binds to platelets and optionally a spacer moiety between the clotting factor and the targeting moiety.
  • polypeptide comprising FVII which FVII comprises a heterologous enzymatic cleavage site activatable by a component of the clotting cascade.
  • the invention provides unprocessed polypeptides in which at least two Fc moieties or domains (e.g., 2, 3, 4, 5, 6, or more Fc moieties or domains) within the same linear polypeptide chain that are capable of folding (e.g., intramolecularly or intermolecularly folding) to form one functional scFc region which is linked by an Fc polypeptide linker.
  • a polypeptide of the invention is capable of binding, via its scFc region, to at least one Fc receptor (e.g. an FcRn, an Fc ⁇ R receptor (e.g., Fc ⁇ RIII), or a complement protein (e.g. C1q)) in order to improve half life or trigger an immune effector function (e.g., antibody-dependent cytotoxicity (ADCC), phagocytosis, or complement-dependent cytotoxicity (CDCC) and/or to improve manufacturability).
  • ADCC antibody-dependent cytotoxicity
  • phagocytosis phag
  • a polypeptide comprises the moieties:
  • Formula (I) comprises at least an A or B and optionally both.
  • a and B if both present, can be the corresponding heavy and light chains of a clotting factor.
  • Formula (I) comprises at least a P1 or P2 and optionally both.
  • P1 and P2, if both present, can be the same or different.
  • Formula (I) comprises at least a F1 and F2.
  • F1 and F2, if both present, can be the same or different.
  • Exemplary polypeptides according to formula I include: A-F1-P1-L-P2-F2; F1-P1-L-P2-B-F2; A-F1-P1-L-F2; F1-P1-L-B-F2; A-F1-L-P2-F2; and F1-L-P2-B-F2.
  • F1 and F2 each comprise a CH2 and CH3 moiety.
  • a polypeptide of the invention comprises two polypeptide chains where the first polypeptide chain comprises A linked to a first Fc moiety and where the second polypeptide chain comprises B linked to a second Fc moiety, where F1 and F2 dimerize to form an Fc region.
  • a and B are optionally present and are clotting factors or portions thereof.
  • A is the light chain of a clotting factor and B is the heavy chain of a clotting factor.
  • B is the light chain of a clotting factor and A is the heavy chain of a clotting factor.
  • the polypeptide when A and B associate in the polypeptide, the polypeptide then forms a functional clotting factor, e.g., FVII, FIX or FX. In one embodiment, such a polypeptide is enzymatically active upon secretion from a cell.
  • Fc moieties useful as F1 and F2 for producing the polypeptides of the present invention may be obtained from a number of different sources.
  • an Fc moiety of the polypeptide is derived from a human immunoglobulin. It is understood, however, that the Fc moiety may be derived from an immunoglobulin of another mammalian species, including for example, a rodent (e.g. a mouse, rat, rabbit, guinea pig) or non-human primate (e.g. chimpanzee, macaque) species.
  • rodent e.g. a mouse, rat, rabbit, guinea pig
  • non-human primate e.g. chimpanzee, macaque
  • polypeptide Fc domain or portion thereof may be derived from any immunoglobulin class, including IgM, IgG, IgD, IgA and IgE, and any immunoglobulin isotype, including IgG1, IgG2, IgG3 and IgG4.
  • immunoglobulin class including IgM, IgG, IgD, IgA and IgE
  • immunoglobulin isotype including IgG1, IgG2, IgG3 and IgG4.
  • the human isotype IgG1 is used.
  • Fc moiety gene sequences e.g. human constant region gene sequences
  • Constant region domains comprising an Fc moiety sequence can be selected having a particular effector function (or lacking a particular effector function) or with a particular modification to reduce immunogenicity.
  • Many sequences of antibodies and antibody-encoding genes have been published and suitable Fc moiety sequences (e.g. hinge, CH2, and/or CH3 sequences, or portions thereof) can be derived from these sequences using art recognized techniques.
  • the genetic material obtained using any of the foregoing methods may then be altered or synthesized to obtain polypeptides of the present invention. It will further be appreciated that the scope of this invention encompasses alleles, variants and mutations of constant region DNA sequences.
  • Fc moiety sequences can be cloned, e.g., using the polymerase chain reaction and primers which are selected to amplify the domain of interest.
  • mRNA can be isolated from hybridoma, spleen, or lymph cells, reverse transcribed into DNA, and antibody genes amplified by PCR.
  • PCR amplification methods are described in detail in U.S. Pat. Nos. 4,683,195; 4,683,202; 4,800,159; 4,965,188; and in, e.g., “PCR Protocols: A Guide to Methods and Applications” Innis et al. eds., Academic Press, San Diego, Calif. (1990); Ho et al. 1989.
  • PCR may be initiated by consensus constant region primers or by more specific primers based on the published heavy and light chain DNA and amino acid sequences. As discussed above, PCR also may be used to isolate DNA clones encoding the antibody light and heavy chains. In this case the libraries may be screened by consensus primers or larger homologous probes, such as mouse constant region probes. Numerous primer sets suitable for amplification of antibody genes are known in the art (e.g., 5′ primers based on the N-terminal sequence of purified antibodies (Benhar and Pastan. 1994. Protein Engineering 7:1509); rapid amplification of cDNA ends (Ruberti, F. et al.
  • the polypeptides of the invention may comprise two or more Fc moieties (e.g., 2, 3, 4, 5, 6, 7, 8, 9, 10, or more Fc moieties). These two or more Fc moieties can form a Fc region. In one embodiment, the Fc moieties may be of different types. In one embodiment, at least one Fc moiety present in the polypeptide comprises a hinge domain or portion thereof. In another embodiment, the polypeptide of the invention comprises at least one Fc moiety which comprises at least one CH2 domain or portion thereof. In another embodiment, the polypeptide of the invention comprises at least one Fc moiety which comprises at least one CH3 domain or portion thereof.
  • polypeptide of the invention comprises at least one Fc moiety which comprises at least one CH4 domain or portion thereof. In another embodiment, the polypeptide of the invention comprises at least one Fc moiety which comprises at least one hinge domain or portion thereof and at least one CH2 domain or portion thereof (e.g, in the hinge-CH2 orientation). In another embodiment, the polypeptide of the invention comprises at least one Fc moiety which comprises at least one CH2 domain or portion thereof and at least one CH3 domain or portion thereof (e.g, in the CH2-CH3 orientation).
  • polypeptide of the invention comprises at least one Fc moiety comprising at least one hinge domain or portion thereof, at least one CH2 domain or portion thereof, and least one CH3 domain or portion thereof, for example in the orientation hinge-CH2-CH3, hinge-CH3-CH2, or CH2-CH3-hinge.
  • the polypeptide comprises at least one complete Fc region derived from one or more immunoglobulin heavy chains (e.g., an Fc domain including hinge, CH2, and CH3 domains, although these need not be derived from the same antibody). In other embodiments, the polypeptide comprises at least two complete Fc regions derived from one or more immunoglobulin heavy chains. In preferred embodiments, the complete Fc moiety is derived from a human IgG immunoglobulin heavy chain (e.g., human IgG1).
  • a polypeptide of the invention comprises at least one Fc moiety comprising a complete CH3 domain (about amino acids 341-438 of an antibody Fc region according to EU numbering). In another embodiment, a polypeptide of the invention comprises at least one Fc moiety comprising a complete CH2 domain (about amino acids 231-340 of an antibody Fc region according to EU numbering). In another embodiment, a polypeptide of the invention comprises at least one Fc moiety comprising at least a CH3 domain, and at least one of a hinge region (about amino acids 216-230 of an antibody Fc region according to EU numbering), and a CH2 domain. In one embodiment, a polypeptide of the invention comprises at least one Fc moiety comprising a hinge and a CH3 domain.
  • a polypeptide of the invention comprises at least one Fc moiety comprising a hinge, a CH 2 , and a CH 3 domain.
  • the Fc moiety is derived from a human IgG immunoglobulin heavy chain (e.g., human IgG1).
  • an Fc moiety comprises or consists of amino acids corresponding to EU numbers 221 to 447.
  • a polypeptide of the invention comprises at least one Fc moiety comprising an FcRn binding partner.
  • An FcRn binding partner is a molecule or portion thereof that can be specifically bound by the FcRn receptor with consequent active transport by the FcRn receptor of the FcRn binding partner.
  • Specifically bound refers to two molecules forming a complex that is relatively stable under physiologic conditions. Specific binding is characterized by a high affinity and a low to moderate capacity as distinguished from nonspecific binding which usually has a low affinity with a moderate to high capacity. Typically, binding is considered specific when the affinity constant KA is higher than 10 6 M ⁇ 1 , or more preferably higher than 10 8 M ⁇ 1 .
  • non-specific binding can be reduced without substantially affecting specific binding by varying the binding conditions.
  • the appropriate binding conditions such as concentration of the molecules, ionic strength of the solution, temperature, time allowed for binding, concentration of a blocking agent (e.g. serum albumin, milk casein), etc., may be optimized by a skilled artisan using routine techniques.
  • the FcRn receptor has been isolated from several mammalian species including humans. The sequences of the human FcRn, monkey FcRn rat FcRn, and mouse FcRn are known (Story et al. 1994, J. Exp. Med. 180:2377).
  • the FcRn receptor binds IgG (but not other immunoglobulin classes such as IgA, IgM, IgD, and IgE) at relatively low pH, actively transports the IgG transcellularly in a luminal to serosal direction, and then releases the IgG at relatively higher pH found in the interstitial fluids. It is expressed in adult epithelial tissue (U.S. Pat. Nos.
  • FcRn binding partners of the present invention encompass molecules that can be specifically bound by the FcRn receptor including whole IgG, the Fc fragment of IgG, and other fragments that include the complete binding region of the FcRn receptor.
  • the region of the Fc portion of IgG that binds to the FcRn receptor has been described based on X-ray crystallography (Burmeister et al. 1994, Nature 372:379).
  • the major contact area of the Fc with the FcRn is near the junction of the CH2 and CH3 domains. Fc-FcRn contacts are all within a single Ig heavy chain.
  • the FcRn binding partners include whole IgG, the Fc fragment of IgG, and other fragments of IgG that include the complete binding region of FcRn.
  • the major contact sites include amino acid residues 248, 250-257, 272, 285, 288, 290-291, 308-311, and 314 of the CH2 domain and amino acid residues 385-387, 428, and 433-436 of the CH3 domain.
  • References made to amino acid numbering of immunoglobulins or immunoglobulin fragments, or regions, are all based on Kabat et al. 1991, Sequences of Proteins of Immunological Interest, U.S. Department of Public Health, Bethesda, Md.
  • the Fc region of IgG can be modified according to well recognized procedures such as site directed mutagenesis and the like to yield modified IgG or Fc fragments or portions thereof that will be bound by FcRn.
  • modifications include modifications remote from the FcRn contact sites as well as modifications within the contact sites that preserve or even enhance binding to the FcRn.
  • Fc yl the following single amino acid residues in human IgG1 Fc (Fc yl) can be substituted without significant loss of Fc binding affinity for FcRn: P238A, S239A, K246A, K248A, D249A, M252A, T256A, E258A, T260A, D265A, S267A, H268A, E269A, D270A, E272A, L274A, N276A, Y278A, D280A, V282A, E283A, H285A, N286A, T289A, K290A, R292A, E293A, E294A, Q295A, Y296F, N297A, S298A, Y300F, R301A, V303A, V305A, T307A, L309A, Q311A, D312A, N315A, K317A, E318A,
  • one specific embodiment incorporates the N297A mutation, removing a highly conserved N-glycosylation site.
  • N297A may be used to modify Fc, regardless of the biologically active molecule (e.g., EPO, IFN, Factor VII, Factor IX, T20).
  • one embodiment incorporates N297A, removing a highly conserved N-glycosylation site.
  • the effect of this mutation is to reduce immunogenicity, thereby enhancing circulating half life of the FcRn binding partner, and to render the FcRn binding partner incapable of binding to Fc ⁇ RI, Fc ⁇ RIIA, Fc ⁇ RIIB, and Fc ⁇ RIIIA, without compromising affinity for FcRn (Routledge et al. 1995, Transplantation 60:847; Friend et al. 1999, Transplantation 68:1632; Shields et al. 1995, J. Biol. Chem. 276:6591).
  • affinity for FcRn may be increased beyond that of wild type in some instances. This increased affinity may reflect an increased “on” rate, a decreased “off” rate or both an increased “on” rate and a decreased “off” rate. Mutations believed to impart an increased affinity for FcRn include T256A, T307A, E380A, and N434A (Shields et al. 2001, J. Biol. Chem. 276:6591).
  • At least three human Fc gamma receptors appear to recognize a binding site on IgG within the lower hinge region, generally amino acids 234-237. Therefore, another example of new functionality and potential decreased immunogenicity may arise from mutations of this region, as for example by replacing amino acids 233-236 of human IgG1 “ELLG” to the corresponding sequence from IgG2 “PVA” (with one amino acid deletion). It has been shown that Fc ⁇ RI, Fc ⁇ RII, and Fc ⁇ RIII, which mediate various effector functions will not bind to IgG1 when such mutations have been introduced. Ward and Ghetie 1995, Therapeutic Immunology 2:77 and Armour et al. 1999, Eur. J. Immunol. 29:2613.
  • the FcRn binding partner is a polypeptide including the sequence PKNSSMISNTP (SEQ ID NO: 12) and optionally further including a sequence selected from HQSLGTQ (SEQ ID NO: 13), HQNLSDGK (SEQ ID NO: 14), HQNISDGK (SEQ ID NO: 24), or VISSHLGQ (SEQ ID NO: 25) (U.S. Pat. No. 5,739,277).
  • linking the FcRn binding partner, e.g., an Fc fragment of an IgG, to a biologically active molecule provides a means of delivering the biologically active molecule orally, buccally, sublingually, rectally, vaginally, as an aerosol administered nasally or via a pulmonary route, or via an ocular route.
  • the chimeric protein can be administered invasively, e.g., subcutaneously, intravenously.
  • the constant region domains or portions thereof making up an Fc moiety of a polypeptide of the invention may be derived from different immunoglobulin molecules.
  • a polypeptide of the invention may comprise a CH2 domain or portion thereof derived from an IgG1 molecule and a CH3 region or portion thereof derived from an IgG3 molecule.
  • a polypeptide can comprise an Fc moiety comprising a hinge domain derived, in part, from an IgG1 molecule and, in part, from an IgG3 molecule.
  • an Fc moiety may be altered such that it varies in amino acid sequence from a naturally occurring antibody molecule.
  • a polypeptide of the invention comprises an scFc region comprising one or more truncated Fc moieties that are nonetheless sufficient to confer Fc receptor (FcR) binding properties to the Fc region.
  • the portion of an Fc domain that binds to FcRn comprises from about amino acids 282-438 of IgG1, EU numbering (with the primary contact sites being amino acids 248, 250-257, 272, 285, 288, 290-291, 308-311, and 314 of the CH2 domain and amino acid residues 385-387, 428, and 433-436 of the CH3 domain.
  • an Fc moiety of a polypeptide of the invention may comprise or consist of an FcRn binding portion.
  • FcRn binding portions may be derived from heavy chains of any isotype, including IgG1, IgG2, IgG3 and IgG4.
  • an FcRn binding portion from an antibody of the human isotype IgG1 is used.
  • an FcRn binding portion from an antibody of the human isotype IgG4 is used.
  • a polypeptide of the invention lacks one or more constant region domains of a complete Fc region, i.e., they are partially or entirely deleted.
  • polypeptides of the invention will lack an entire CH2 domain ( ⁇ CH2 constructs). Those skilled in the art will appreciate that such constructs may be preferred due to the regulatory properties of the CH2 domain on the catabolic rate of the antibody.
  • polypeptides of the invention comprise CH2 domain-deleted Fc regions derived from a vector (e.g., from IDEC Pharmaceuticals, San Diego) encoding an IgG 1 human constant region domain (see, e.g., WO 02/060955A2 and WO02/096948A2).
  • This exemplary vector is engineered to delete the CH2 domain and provide a synthetic vector expressing a domain-deleted IgG 1 constant region. It will be noted that these exemplary constructs are preferably engineered to fuse a binding CH3 domain directly to a hinge region of the respective Fc domain.
  • a spacer moiety may be placed between a hinge region and a CH2 domain and/or between a CH2 and a CH3 domains.
  • a spacer moiety may be expressed wherein the CH2 domain has been deleted and the remaining CH3 domain (synthetic or unsynthetic) is joined to the hinge region with a 5-20 amino acid spacer moiety.
  • Such a spacer moiety may be added, for instance, to ensure that the regulatory elements of the constant region domain remain free and accessible or that the hinge region remains flexible.
  • any linker peptide compatible with the instant invention will be relatively non-immunogenic and not prevent proper folding of the scFc region.
  • the polypeptides of the invention may comprise a dimeric Fc region comprising Fc moieties of the same, or substantially the same, sequence composition (herein termed a “homodimeric Fc region”).
  • the polypeptides of the invention may comprise a dimeric Fc region comprising at least two Fc moieties which are of different sequence composition (i.e., herein termed a “heterodimeric Fc region”).
  • the heterodimeric Fc region comprises an amino acid substitution in a first Fc moiety (e.g., an amino acid substitution of Asparagine at EU position 297 ), but not in a second Fc moiety.
  • the Fc region is hemi-glycosylated.
  • the heteromeric scFc region may comprise a first, glycosylated, Fc moiety (e.g., a glycosylated CH2 region) and a second, aglycosylated, Fc moiety (e.g., an aglycosylated CH2 region), wherein a linker is interposed between the glycosylated and aglycosylated Fc moieties.
  • the Fc region is fully glycosylated, i.e., all of the Fc moieties are glycosylated.
  • the Fc region may be aglycosylated, i.e., none of the Fc moieties are glycosylated.
  • an Fc moiety employed in a polypeptide of the invention is altered, e.g., by amino acid mutation (e.g., addition, deletion, or substitution).
  • an Fc moiety has at least one amino acid substitution as compared to the wild-type Fc from which the Fc moiety is derived.
  • a variant comprises at least one amino acid mutation (e.g., substitution) as compared to a wild type amino acid at the corresponding position of the human IgG1 Fc region.
  • the amino acid substitution(s) of an Fc variant may be located at a position within the Fc moiety referred to as corresponding to the position number that that residue would be given in an Fc region in an antibody (as set forth using the EU numbering convention).
  • corresponding to the position number that that residue would be given in an Fc region in an antibody as set forth using the EU numbering convention.
  • One of skill in the art can readily generate alignments to determine what the EU number corresponding to a position in an Fc moiety would be.
  • the Fc variant comprises a substitution at an amino acid position located in a hinge domain or portion thereof. In another embodiment, the Fc variant comprises a substitution at an amino acid position located in a CH2 domain or portion thereof. In another embodiment, the Fc variant comprises a substitution at an amino acid position located in a CH3 domain or portion thereof. In another embodiment, the Fc variant comprises a substitution at an amino acid position located in a CH4 domain or portion thereof.
  • the polypeptides of the invention comprise an Fc variant comprising more than one amino acid substitution.
  • the polypeptides of the invention may comprise, for example, 2, 3, 4, 5, 6, 7, 8, 9, 10 or more amino acid substitutions.
  • the amino acid substitutions are spatially positioned from each other by an interval of at least 1 amino acid position or more, for example, at least 2, 3, 4, 5, 6, 7, 8, 9, or 10 amino acid positions or more.
  • the engineered amino acids are spatially positioned apart from each other by an interval of at least 5, 10, 15, 20, or 25 amino acid positions or more.
  • the Fc variant confers a change in at least one effector function imparted by an Fc region comprising said wild-type Fc domain (e.g., an improvement or reduction in the ability of the Fc region to bind to Fc receptors (e.g. Fc ⁇ RI, Fc ⁇ RII, or Fc ⁇ RIII) or complement proteins (e.g. Clq), or to trigger antibody-dependent cytotoxicity (ADCC), phagocytosis, or complement-dependent cytotoxicity (CDCC)).
  • Fc receptors e.g. Fc ⁇ RI, Fc ⁇ RII, or Fc ⁇ RIII
  • complement proteins e.g. Clq
  • ADCC antibody-dependent cytotoxicity
  • phagocytosis phagocytosis
  • CDC complement-dependent cytotoxicity
  • the Fc variant provides an engineered cysteine residue
  • the polypeptides of the invention may employ art-recognized Fc variants which is known to impart a change (e.g., an enhancement or reduction) in effector function and/or FcR or FcRn binding.
  • a binding molecule of the invention may include, for example, a change (e.g., a substitution) at one or more of the amino acid positions disclosed in International PCT Publications WO88/07089A1, WO96/14339A1, WO98/05787A1, WO98/23289A1, WO99/51642A1, WO99/58572A1, WO00/09560A2, WO00/32767A1, WO00/42072A2, WO02/44215A2, WO02/060919A2, WO03/074569A2, WO04/016750A2, WO04/029207A2, WO04/035752A2, WO04/063351A2, WO04/074455A2, WO04/0992
  • the specific change (e.g., the specific substitution of one or more amino acids disclosed in the art) may be made at one or more of the disclosed amino acid positions.
  • a different change at one or more of the disclosed amino acid positions (e.g., the different substitution of one or more amino acid position disclosed in the art) may be made.
  • a polypeptide of the invention comprises an amino acid substitution to an Fc moiety which alters the antigen-independent effector functions of the antibody, in particular the circulating half-life of the antibody.
  • Such polypeptides exhibit either increased or decreased binding to FcRn when compared to polypeptides lacking these substitutions and, therefore, have an increased or decreased half-life in serum, respectively.
  • Fc variants with improved affinity for FcRn are anticipated to have longer serum half-lives, and such molecules have useful applications in methods of treating mammals where long half-life of the administered polypeptide is desired, e.g., to treat a chronic disease or disorder (see, e.g, U.S. Pat. Nos. 7,348,004, 7,404,956, and 7,862,820).
  • Fc variants with decreased FcRn binding affinity are expected to have shorter half-lives, and such molecules are also useful, for example, for administration to a mammal where a shortened circulation time may be advantageous, e.g. for in vivo diagnostic imaging or in situations where the starting polypeptide has toxic side effects when present in the circulation for prolonged periods.
  • Fc variants with decreased FcRn binding affinity are also less likely to cross the placenta and, thus, are also useful in the treatment of diseases or disorders in pregnant women.
  • other applications in which reduced FcRn binding affinity may be desired include those applications in which localization the brain, kidney, and/or liver is desired.
  • polypeptides of the invention exhibit reduced transport across the epithelium of kidney glomeruli from the vasculature. In another embodiment, the polypeptides of the invention exhibit reduced transport across the blood brain barrier (BBB) from the brain, into the vascular space.
  • a polypeptide with altered FcRn binding comprises at least one Fc moiety (e.g, one or two Fc moieties) having one or more amino acid substitutions within the “FcRn binding loop” of an Fc moiety.
  • the FcRn binding loop is comprised of amino acid residues 280-299 (according to EU numbering) of a wild-type, full-length, Fc moiety.
  • a polypeptide of the invention having altered FcRn binding affinity comprises at least one Fc moiety (e.g, one or two Fc moieties) having one or more amino acid substitutions within the 15 ⁇ FcRn “contact zone.”
  • Fc moiety e.g, one or two Fc moieties
  • 15 ⁇ FcRn “contact zone” includes residues at the following positions of a wild-type, full-length Fc moiety: 243-261, 275-280, 282-293, 302-319, 336-348, 367, 369, 372-389, 391, 393, 408, 424, 425-440 (EU numbering).
  • a polypeptide of the invention having altered FcRn binding affinity comprises at least one Fc moiety (e.g, one or two Fc moieties) having one or more amino acid substitutions at an amino acid position corresponding to any one of the following EU positions: 256, 277-281, 283-288, 303-309, 313, 338, 342, 376, 381, 384, 385, 387, 434 (e.g., N434A or N434K), and 438.
  • Exemplary amino acid substitutions which altered FcRn binding activity are disclosed in International PCT Publication No. WO05/047327 which is incorporated by reference herein.
  • a polypeptide of the invention may also comprise an art recognized amino acid substitution which alters the glycosylation of the polypeptide.
  • the scFc region of the binding polypeptide may comprise an Fc moiety having a mutation leading to reduced glycosylation (e.g., N- or O-linked glycosylation) or may comprise an altered glycoform of the wild-type Fc moiety (e.g., a low fucose or fucose-free glycan).
  • a polypeptide of the invention comprises at least one Fc moiety having engineered cysteine residue or analog thereof which is located at the solvent-exposed surface.
  • the engineered cysteine residue or analog thereof does not interfere with an effector function conferred by the scFc region. More preferably, the alteration does not interfere with the ability of the scFc region to bind to Fc receptors (e.g. Fc ⁇ RI, Fc ⁇ RII, or Fc ⁇ RIII) or complement proteins (e.g. Clq), or to trigger immune effector function (e.g., antibody-dependent cytotoxicity (ADCC), phagocytosis, or complement-dependent cytotoxicity (CDCC)).
  • Fc receptors e.g. Fc ⁇ RI, Fc ⁇ RII, or Fc ⁇ RIII
  • complement proteins e.g. Clq
  • an unprocessed polypeptide of the invention may comprise a genetically fused Fc region (i.e., scFc region) having two or more of its constituent Fc moieties independently selected from the Fc moieties described herein.
  • the Fc moieties of a dimeric Fc region are the same. In another embodiment, at least two of the Fc moieties are different.
  • the Fc moieties of the polypeptides of the invention comprise the same number of amino acid residues or they may differ in length by one or more amino acid residues (e.g., by about 5 amino acid residues (e.g., 1, 2, 3, 4, or 5 amino acid residues), about 10 residues, about 15 residues, about 20 residues, about 30 residues, about 40 residues, or about 50 residues).
  • the Fc moieties of the polypeptides of the invention may differ in sequence at one or more amino acid positions.
  • at least two of the Fc moieties may differ at about 5 amino acid positions (e.g., 1, 2, 3, 4, or 5 amino acid positions), about 10 positions, about 15 positions, about 20 positions, about 30 positions, about 40 positions, or about 50 positions).
  • polypeptide linkers refers to a peptide or polypeptide sequence (e.g., a synthetic peptide or polypeptide sequence) which connects two domains in a linear amino acid sequence of a polypeptide chain.
  • the polypeptides of invention are encoded by nucleic acid molecules that encode polypeptide linkers which either directly or indirectly connect the two Fc moieties which make up the construct. These linkers are referred to herein as “scFc linkers”. If the scFc linker connects two Fc moieties contiguously in the linear polypeptide sequence, it is a “direct” linkage.
  • the scFc linkers may link the first Fc moiety to a binding moiety which is, in turn, linked to the second Fc moiety, thereby forming an indirect linkage.
  • These scFc linkers (L) result in the formation of a single chain genetic construct.
  • the scFc polypeptides also comprise enzymatic cleavage sites which result in the scFc linker being cleavable (an cscFc linker) and, in one embodiment, substantially excised (e.g., during processing by a cell).
  • the processed molecule is a dimeric molecule comprising at least two amino acid chains and substantially lacking extraneous linker amino acid sequences.
  • all or substantially all of the linker is excised, while in some embodiments, a portion of the cleavage site may remain, e.g., four arginines of the RRRR cleavage site.
  • another type of polypeptide linker herein referred to as a “spacer” may be used to connect different moieties, e.g., a clotting factor or a targeting moiety to an Fc moiety.
  • This type of polypeptide linker may provide flexibility to the polypeptide molecule. Spacers are not typically cleaved, however such cleavage may be desirable. Exemplary positions of spacers are shown in the accompanying drawings. Spacers can be located between the clotting factors, targeting moieties, and/or scaffolds, e.g., at the N or C terminus of these moieties. In one embodiment, these linkers are not removed during processing.
  • a third type of linker which may be present in a chimeric clotting factor of the invention is a cleavable linker which comprises a cleavage site (e.g., a factor XIa, Xa, or thrombin cleavage site) and which may include additional spacer linkers on either the N terminal of C terminal or both sides of the cleavage site.
  • cleavable linkers when incorporated into a clotting factor result in a chimeric molecule having a heterologous cleavage site. Exemplary locations for such sites are shown in the accompanying drawings and include, e.g., adjacent to targeting moieties, In another embodiment, such linkers may be adjacent to a clotting factor or portion thereof.
  • a cleavable linker may be fused to the N terminus of the heavy chain of a clotting factor to make an activatable form of the clotting factor.
  • the cleavable linker may include additional spacer linkers at the N terminus of the cleavage site, but require direct fusion at the C-terminus of the cleavage site to the amino terminus of the heavy chain of the clotting factor.
  • an unprocessed polypeptide of the instant invention comprises two or more Fc domains or moieties linked via a cscFc linker to form an Fc region comprised in a single polypeptide chain.
  • the cscFc linker is flanked by at least one enzymatic cleavage site, e.g., a site for processing by an intracellular enzyme. Cleavage of the polypeptide at the at least one enzymatic cleavage site results in a polypeptide which comprises at least two polypeptide chains.
  • an cscFc linker links F1 or F2 to, e.g., a clotting factor, optionally via a cleavage site.
  • polypeptide linkers may optionally be used in a construct of the invention, e.g., to connect a clotting factor or targeting moiety to an Fc moiety.
  • One type of pollypeptide linker is referred to here as spacers.
  • Some exemplary locations of spacers that can be used in connection with the invention include, e.g., polypeptides comprising GlySer amino acids such as those set forth in the accompanying figures and described in more detail below.
  • a spacer may be adjacent to one or more moieties each independently selected from clotting factor, scaffold moiety, e.g., Fc, cleavage site, and a targeting moiety.
  • the polypeptide linker is synthetic, i.e., non-naturally occurring.
  • a polypeptide linker includes peptides (or polypeptides) (which may or may not be naturally occurring) which comprise an amino acid sequence that links or genetically fuses a first linear sequence of amino acids to a second linear sequence of amino acids to which it is not naturally linked or genetically fused in nature.
  • the polypeptide linker may comprise non-naturally occurring polypeptides which are modified forms of naturally occurring polypeptides (e.g., comprising a mutation such as an addition, substitution or deletion).
  • the polypeptide linker may comprise non-naturally occurring amino acids.
  • the polypeptide linker may comprise naturally occurring amino acids occurring in a linear sequence that does not occur in nature.
  • the polypeptide linker may comprise a naturally occurring polypeptide sequence.
  • a polypeptide linker can be used to fuse identical Fc moieties, thereby forming a homomeric scFc region.
  • a polypeptide linker can be used to fuse different Fc moieties (e.g. a wild-type Fc moiety and an Fc moiety variant), thereby forming a heteromeric scFc region.
  • a polypeptide linker comprises or consists of a gly-ser linker.
  • an scFc or cscFc linker comprises at least a portion of an immunoglobulin hinge and a gly-ser linker.
  • gly-ser linker refers to a peptide that consists of glycine and serine residues.
  • An exemplary gly/ser linker comprises an amino acid sequence of the formula (Gly 4 Ser)n (SEQ ID NO: 4), wherein is a positive integer (e.g., 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10).
  • a preferred gly/ser linker is (Gly 4 Ser) 2 (SEQ ID NO:29), (Gly 4 Ser) 4 (SEQ ID NO:6), or (Gly 4 Ser) 6 .
  • Another exemplary gly-ser linker is GGGSSGGGSG (SEQ ID NO: 30).
  • said gly-ser linker may be inserted between two other sequences of the polypeptide linker (e.g., any of the polypeptide linker sequences described herein).
  • a gly-ser linker is attached at one or both ends of another sequence of the polypeptide linker (e.g., any of the polypeptide linker sequences described herein).
  • two or more gly-ser linker are incorporated in series in a polypeptide linker.
  • a polypeptide linker of the invention comprises at least a portion of an upper hinge region (e.g., derived from an IgG1, IgG2, IgG3, or IgG4 molecule), at least a portion of a middle hinge region (e.g., derived from an IgG1, IgG2, IgG3, or IgG4 molecule) and a series of gly/ser amino acid residues (e.g., a gly/ser linker such as (Gly 4 Ser)n) (SEQ ID NO:4)).
  • an upper hinge region e.g., derived from an IgG1, IgG2, IgG3, or IgG4 molecule
  • a middle hinge region e.g., derived from an IgG1, IgG2, IgG3, or IgG4 molecule
  • gly/ser amino acid residues e.g., a gly/ser linker such as (Gly 4 Ser)n
  • Polypeptide linkers of the invention are at least one amino acid in length and can be of varying lengths.
  • a polypeptide linker of the invention is from about 1 to about 50 amino acids in length.
  • the term “about” indicates+/ ⁇ two amino acid residues. Since linker length must be a positive interger, the length of from about 1 to about 50 amino acids in length, means a length of from 1-3 to 48-52 amino acids in length.
  • a polypeptide linker of the invention is from about 10-20 amino acids in length.
  • a polypeptide linker of the invention is from about 15 to about 50 amino acids in length.
  • a polypeptide linker of the invention is from about 20 to about 45 amino acids in length.
  • a polypeptide linker of the invention is from about 15 to about 35 or about 20 to about 30 amino acids in length. In another embodiment, a polypeptide linker of the invention is from about 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 40, 50, or 60 amino acids in length. In one embodiment, a peptide linker of the invention is 20 or 30 amino acids in length.
  • Polypeptide linkers can be introduced into polypeptide sequences using techniques known in the art. Modifications can be confirmed by DNA sequence analysis. Plasmid DNA can be used to transform host cells for stable production of the polypeptides produced.
  • one or more enzymatic cleavage site(s) is linked to e.g., flanks or is adjacent to, a cscFc linker (L) of an unprocessed polypeptide of the invention.
  • Such cleavage sites can be upstream or downstream of the cscFc liner or both.
  • a cleavage site is linked (e.g., directly or indirectly) to one or both ends of a cscFc linker (L).
  • a nucleic acid molecule of the invention specifies a polypeptide represented by the formula:
  • Formula (I) comprises at least an A or B and optionally both.
  • a and B if both present, can be the corresponding heavy and light chains of a clotting factor.
  • Formula (I) comprises at least a P1 or P2 and optionally both.
  • P1 and P2, if both present, can be the same or different.
  • Formula (I) comprises at least a F1 and F2.
  • F1 and F2, if both present, can be the same or different.
  • a Factor XIa or Xa cleavage site may be incorporated into a construct of the invention, e.g., in a cleavable linker.
  • Exemplary FXIa cleavage sites include, e.g, TQSFNDFTR and SVSQTSKLTR.
  • Exemplary thrombin cleavage sites include, e.g, DFLAEGGGVR, TTKIKPR, LVPRG SEQ ID NO:35) and ALRPRVVGGA Other useful cleavage sites are known in the art.
  • some portion of the linker may remain after cleavage at the at least one enzymatic cleavage site.
  • two cleavage sites may be included in a polypeptide of the invention.
  • all or substantially all of the linker is excised, while in some embodiments, a portion of the cleavage site may remain, e.g., four arginines of the RRRR cleavage site.
  • the invention relates to a nucleic acid construct comprising a nucleic acid sequence encoding the chimeric proteins of the invention. It will be understood that because of the degeneracy of the code, a variety of nucleic acid sequences will encode the amino acid sequence of the polypeptide.
  • the desired polynucleotide can be produced by de novo solid-phase DNA synthesis or by PCR mutagenesis of an earlier prepared polynucleotide.
  • Oligonucleotide-mediated mutagenesis is one method for preparing a substitution, in-frame insertion, or alteration (e.g., altered codon) to introduce a codon encoding an amino acid substitution (e.g., into an Fc variant moiety).
  • the starting polypeptide DNA is altered by hybridizing an oligonucleotide encoding the desired mutation to a single-stranded DNA template. After hybridization, a DNA polymerase is used to synthesize an entire second complementary strand of the template that incorporates the oligonucleotide primer.
  • genetic engineering e.g., primer-based PCR mutagenesis, is sufficient to incorporate an alteration, as defined herein, for producing a polynucleotide encoding a polypeptide of the invention.
  • a polynucleotide sequence encoding the chimeric protein is inserted into an appropriate expression vehicle, i. e., a vector which contains the necessary elements for the transcription and translation of the inserted coding sequence, or in the case of an RNA viral vector, the necessary elements for replication and translation.
  • an appropriate expression vehicle i. e., a vector which contains the necessary elements for the transcription and translation of the inserted coding sequence, or in the case of an RNA viral vector, the necessary elements for replication and translation.
  • the nucleic acid encoding the chimeric protein is inserted into the vector in proper reading frame.
  • the expression vector is then transfected into a suitable target cell which will express the polypeptide.
  • Transfection techniques known in the art include, but are not limited to, calcium phosphate precipitation (Wigler et al. 1978, Cell 14: 725) and electroporation (Neumann et al. 1982, EMBO, J. 1: 841).
  • a variety of host-expression vector systems may be utilized to express the chimeric proteins described herein in eukaryotic cells.
  • the eukaryotic cell is an animal cell, including mammalian cells (e. g. 293 cells, PerC6, CHO, BHK, Cos, HeLa cells).
  • the DNA encoding the chimeric protein may also code for a signal sequence that will permit the chimeric protein to be secreted.
  • a signal sequence that will permit the chimeric protein to be secreted.
  • the signal sequence is cleaved by the cell to form the mature chimeric protein.
  • Various signal sequences are known in the art e. g., native factor V11 signal sequence, native factor IX signal sequence and the mouse IgK light chain signal sequence.
  • the chimeric protein can be recovered by lysing the cells.
  • transgenic animals refers to non-human animals that have incorporated a foreign gene into their genome. Because this gene is present in germline tissues, it is passed from parent to offspring. Exogenous genes are introduced into single-celled embryos (Brinster et al. 1985, Proc. Natl. Acad. Sci. USA 82: 4438). Methods of producing transgenic animals are known in the art. including transgenics that produce immunoglobulin molecules (Wagner et al. 1981, Proc. Natl. Acad. Sci. USA 78: 6376; McKnight et al.
  • the expression vectors can encode for tags that permit for easy purification or identification of the recombinantly produced protein.
  • tags include, but are not limited to, vector pUR278 (Ruther et al. 1983, EMBO J. 2: 1791) in which the chimeric protein described herein coding sequence may be ligated into the vector in frame with the lac z coding region so that a hybrid protein is produced;
  • pGEX vectors may be used to express proteins with a glutathione S-transferase (GST) tag. These proteins are usually soluble and can easily be purified from cells by adsorption to glutathione-agarose beads followed by elution in the presence of free glutathione.
  • the vectors include cleavage sites (e. g. PreCission Protease (Pharmacia, Peapack, N.J.)) for easy removal of the tag after purification.
  • expression vector systems may be employed. These expression vectors are typically replicable in the host organisms either as episomes or as an integral part of the host chromosomal DNA.
  • Expression vectors may include expression control sequences including, but not limited to, promoters (e.g., naturally-associated or heterologous promoters), enhancers, signal sequences, splice signals, enhancer elements, and transcription termination sequences.
  • promoters e.g., naturally-associated or heterologous promoters
  • enhancers e.g., signal sequences, splice signals, enhancer elements, and transcription termination sequences.
  • the expression control sequences are eukaryotic promoter systems in vectors capable of transforming or transfecting eukaryotic host cells.
  • Expression vectors may also utilize DNA elements which are derived from animal viruses such as bovine papilloma virus, polyoma virus, adenovirus, vaccinia virus, baculovirus, retroviruses (RSV, MMTV or MOMLV), cytomegalovirus (CMV), or SV40 virus. Others involve the use of polycistronic systems with internal ribosome binding sites.
  • expression vectors contain selection markers (e.g., ampicillin-resistance, hygromycin-resistance, tetracycline resistance or neomycin resistance) to permit detection of those cells transformed with the desired DNA sequences (see, e.g., Itakura et al., U.S. Pat. No. 4,704,362).
  • Cells which have integrated the DNA into their chromosomes may be selected by introducing one or more markers which allow selection of transfected host cells.
  • the marker may provide for prototrophy to an auxotrophic host, biocide resistance (e.g., antibiotics) or resistance to heavy metals such as copper.
  • the selectable marker gene can either be directly linked to the DNA sequences to be expressed, or introduced into the same cell by cotransformation.
  • a preferred expression vector is NEOSPLA (U.S. Pat. No. 6,159,730).
  • This vector contains the cytomegalovirus promoter/enhancer, the mouse beta globin major promoter, the SV40 origin of replication, the bovine growth hormone polyadenylation sequence, neomycin phosphotransferase exon 1 and exon 2, the dihydrofolate reductase gene and leader sequence.
  • This vector has been found to result in very high level expression of antibodies upon incorporation of variable and constant region genes, transfection in cells, followed by selection in G418 containing medium and methotrexate amplification.
  • Vector systems are also taught in U.S. Pat. Nos.
  • polypeptides of the invention of the instant invention may be expressed using polycistronic constructs.
  • multiple gene products of interest such as multiple polypeptides of multimer binding protein may be produced from a single polycistronic construct.
  • IRES internal ribosome entry site
  • Compatible IRES sequences are disclosed in U.S. Pat. No. 6,193,980 which is also incorporated herein. Those skilled in the art will appreciate that such expression systems may be used to effectively produce the full range of polypeptides disclosed in the instant application.
  • the expression vector may be introduced into an appropriate host cell. That is, the host cells may be transformed.
  • Introduction of the plasmid into the host cell can be accomplished by various techniques well known to those of skill in the art. These include, but are not limited to, transfection (including electrophoresis and electroporation), protoplast fusion, calcium phosphate precipitation, cell fusion with enveloped DNA, microinjection, and infection with intact virus. See, Ridgway, A. A. G. “Mammalian Expression Vectors” Chapter 24.2, pp. 470-472 Vectors, Rodriguez and Denhardt, Eds. (Butterworths, Boston, Mass. 1988).
  • plasmid introduction into the host is via electroporation.
  • the transformed cells are grown under conditions appropriate to the production of the light chains and heavy chains, and assayed for heavy and/or light chain protein synthesis.
  • exemplary assay techniques include enzyme-linked immunosorbent assay (ELISA), radioimmunoassay (RIA), or flourescence-activated cell sorter analysis (FACS), immunohistochemistry and the like.
  • transformation shall be used in a broad sense to refer to the introduction of DNA into a recipient host cell that changes the genotype and consequently results in a change in the recipient cell.
  • host cells refers to cells that have been transformed with vectors constructed using recombinant DNA techniques and encoding at least one heterologous gene.
  • the terms “cell” and “cell culture” are used interchangeably to denote the source of polypeptide unless it is clearly specified otherwise.
  • recovery of polypeptide from the “cells” may mean either from spun down whole cells, or from the cell culture containing both the medium and the suspended cells.
  • the host cell line used for protein expression is most preferably of mammalian origin; those skilled in the art are credited with ability to preferentially determine particular host cell lines which are best suited for the desired gene product to be expressed therein.
  • Exemplary host cell lines include, but are not limited to, DG44 and DUXB11 (Chinese Hamster Ovary lines, DHFR minus), HELA (human cervical carcinoma), CVI (monkey kidney line), COS (a derivative of CVI with SV40 T antigen), R1610 (Chinese hamster fibroblast) BALBC/3T3 (mouse fibroblast), HAK (hamster kidney line), SP2/0 (mouse myeloma), P3.times.63-Ag3.653 (mouse myeloma), BFA-1c1BPT (bovine endothelial cells), RAJI (human lymphocyte), PerC6, and 293 (human kidney). Host cell lines are typically available from commercial services, the American Tissue Culture Collection or
  • a host cell endogenously expresses an enzyme (or the enzymes) necessary to cleave an scFc linker (e.g., if such a linker is present and contains intracellular processing site(s)) during processing to form the mature polyptide. During this processing, the scFc linker may be substantially removed to reduce the presence of extraneous amino acids.
  • a host cell is transformed to express one or more enzymes which are exogenous to the cell such that processing of an scFc linker occurs or is improved.
  • an enzyme which may be endogenously or exogenously expressed by a cell is a member of the furin family of enzymes.
  • Complete cDNA and amino acid sequences of human furin i.e., PACE
  • PACE Proliferative Reduction Agent
  • U.S. Pat. No. 5,935,815, issued to van de Ven et al. likewise describes recombinant human furin (i.e., PACE) and the coexpression of furin with a substrate precursor polypeptide of a heterologous protein to improve expression of active, mature heterologous protein.
  • Possible substrate precursors disclosed in this patent include a precursor of Factor IX.
  • Other family members in the mammalian furin/subtilisin/Kex2p-like proprotein convertase (PC) family in addition to PACE are reported to include PC1/PC3, PC2, PC4, PC5/6 (hereinafter referred to simply as PC5), PACE4, and LPC/PC7/PC8/SPC7.
  • proprotein convertases generally include, beginning from the amino terminus, a signal peptide, a propeptide (that may be autocatalytically cleaved), a subtilisin-like catalytic domain characterized by Asp, His, Ser, and Asn/Asp residues, and a Homo B domain that is also essential for catalytic activity and characterized by an Arg-Gly-Asp (RGD) sequence.
  • PACE, PACE4, and PC5 also include a Cys-rich domain, the function of which is unknown.
  • PC5 has isoforms with and without a transmembrane domain; these different isoforms are known as PCSB and PCSA, respectively.
  • Comparison between the amino acid sequence of the catalytic domain of PACE and the amino acid sequences of the catalytic domains of other members of this family of proprotein convertases reveals the following degrees of identity: 70 percent for PC4; 65 percent for PACE4 and PC5; 61 percent for PC1/PC3; 54 percent for PC2; and 51 percent for LPC/PC7/PC8/SPC7. Nakayama K (1997) Biochem J. 327:625-35.
  • PACE and PACE4 have been reported to have partially overlapping but distinct substrates.
  • PACE4 in striking contrast to PACE, has been reported to be incapable of processing the precursor polypeptide of FIX.
  • U.S. Pat. No. 5,840,529 issued to Seidah et al., discloses nucleotide and amino acid sequences for human PC7 and the notable ability of PC7, as compared to other PC family members, to cleave HIV gp160 to gp120 and gp41.
  • Nucleotide and amino acid sequences of rodent PC5 were first described as PC5 by Lusson J et al. (1993) Proc Natl Acad Sci USA 90:6691-5 and as PC6 by Nakagawa T et al. (1993) J Biochem (Tokyo) 113:132-5.
  • U.S. Pat. No. 6,380,171, issued to Day et al. discloses nucleotide and amino acid sequences for human PCSA, the isoform without the transmembrane domain. The sequences of these enzymes and method of cloning them are known in the art.
  • Genes encoding the polypeptides of the invention can also be expressed in non-mammalian cells such as bacteria or yeast or plant cells.
  • non-mammalian microorganisms such as bacteria can also be transformed; i.e., those capable of being grown in cultures or fermentation.
  • Bacteria which are susceptible to transformation, include members of the enterobacteriaceae, such as strains of Escherichia coli or Salmonella ; Bacillaceae, such as Bacillus subtilis ; Pneumococcus; Streptococcus , and Haemophilus influenzae .
  • the polypeptides when expressed in bacteria, the polypeptides typically become part of inclusion bodies. The polypeptides must be isolated, purified and then assembled into functional molecules.
  • eukaryotic microbes may also be used. Saccharomyces cerevisiae , or common baker's yeast, is the most commonly used among eukaryotic microorganisms although a number of other strains are commonly available.
  • Saccharomyces cerevisiae or common baker's yeast
  • the plasmid YRp7 for example, (Stinchcomb et al., Nature, 282:39 (1979); Kingsman et al., Gene, 7:141 (1979); Tschemper et al., Gene, 10:157 (1980)) is commonly used.
  • This plasmid already contains the TRP1 gene which provides a selection marker for a mutant strain of yeast lacking the ability to grow in tryptophan, for example ATCC No. 44076 or PEP4-1 (Jones, Genetics, 85:12 (1977)).
  • the presence of the trpl lesion as a characteristic of the yeast host cell genome then provides an effective environment for detecting transformation by growth in the absence of tryptophan.
  • Other yeast hosts such Pichia may also be employed.
  • Yeast expression vectors having expression control sequences (e.g., promoters), an origin of replication, termination sequences and the like as desired. Typical promoters include 3-phosphoglycerate kinase and other glycolytic enzymes.
  • Inducible yeast promoters include, among others, promoters from alcohol dehydrogenase, isocytochrome C, and enzymes responsible for methanol, maltose, and galactose utilization.
  • polypeptide-coding nucleotide sequences can be incorporated in transgenes for introduction into the genome of a transgenic animal and subsequent expression in the milk of the transgenic animal (see, e.g., Deboer et al., U.S. Pat. No. 5,741,957, Rosen, U.S. Pat. No. 5,304,489, and Meade et al., U.S. Pat. No. 5,849,992).
  • Suitable transgenes include coding sequences for polypeptides in operable linkage with a promoter and enhancer from a mammary gland specific gene, such as casein or beta lactoglobulin.
  • tissue culture conditions include homogeneous suspension culture, e.g. in an airlift reactor or in a continuous stirrer reactor, or immobilized or entrapped cell culture, e.g. in hollow fibers, microcapsules, on agarose microbeads or ceramic cartridges.
  • the solutions of polypeptides can be purified by the customary chromatography methods, for example gel filtration, ion-exchange chromatography, chromatography over DEAE-cellulose or (immuno-) affinity chromatography, e.g., after preferential biosynthesis of a synthetic hinge region polypeptide or prior to or subsequent to the HIC chromatography step described herein.
  • An affinity tag sequence e.g. a His(6) tag
  • a host cell of the invention comprises a genetic construct encoding a polypeptide comprising an scFc scaffold and one or more enzymes that can process a cscFc linker.
  • the construct and the enzyme(s) can be expressed using a single vector or two vectors.
  • the invention pertains to nucleic acid molecules which encode a polypeptide of the invention.
  • the nucleic acid molecule encodes a chimeric clotting factor selected from the group consisting of FVII, FIX and FX and which comprises a targeting moiety which binds to platelets and optionally a spacer moiety between the clotting factor and the targeting moiety.
  • the invention pertains to a nucleic acid molecule encoding a polypeptide comprising FVII, which FVII which comprises a heterologous enzymatic cleavage site activatable by a component of the clotting cascade.
  • the chimeric clotting factor can be purified according to standard procedures of the art, including ammonium sulfate precipitation, affinity column chromatography, HPLC purification, gel electrophoresis and the like (see generally Scopes, Protein Purification (Springer-Verlag, N.Y., (1982)) and see specifically the methods used in the instant Examples. Substantially pure proteins of at least about 90 to 95% homogeneity are preferred, and 98 to 99% or more homogeneity most preferred, for pharmaceutical uses.
  • the invention in another embodiment, relates to a method of treating a subject with a hemostatic disorder comprising administering a therapeutically effective amount of an enhanced clotting factor of the Invention.
  • compositions for administration to a subject include nucleic acid molecules which comprise a nucleotide sequence encoding a chimeric clotting factor of the invention (for gene therapy applications) as well as polypeptide molecules.
  • an enhanced doting factor composition of the invention is administered in combination with at least one other agent that promotes hemostasis.
  • Said other agent that promotes hemostasis Is a therapeutic with demonstrated clotting activity.
  • hemostatic agent can include Factor V, Factor VII, Factor VIII, Factor IX, Factor X, Factor XI, Factor XII, Factor XIII, prothrombin, or fibrinogen or activated forms of any of the preceding.
  • the clotting factor of hemostatic agent can also include anti-fibrinolytic drugs, e.g., epsilon-amino-caproic acid, tranexamic acid.
  • the composition e.g., the polypeptide or nucleic acid molecule encoding the polypeptide
  • the clotting factor is present in active form when administered to a subject.
  • Such an activated molecule may be expressed by a cell in active form or may be activated in vitro prior to administration to a subject.
  • the composition is one in which the clotting factor is present in activatable form and the clotting factor is activated in vivo at the site of clotting after administration to a subject.
  • the chimeric clotting factor of the invention can be administered intravenously, subcutaneously, intramuscularly, or via any mucosal surface, e.g., orally, sublingually, buccally, sublingually, nasally, rectally, vaginally or via pulmonary route.
  • the chimeric protein can be implanted within or linked to a biopolymer solid support that allows for the slow release of the chimeric protein to the desired site.
  • the pharmaceutical composition can take the form of tablets or capsules prepared by conventional means.
  • the composition can also be prepared as a liquid for example a syrup or a suspension.
  • the liquid can include suspending agents (e.g. sorbitol syrup, cellulose derivatives or hydrogenated edible fats), emulsifying agents (lecithin or acacia), non-aqueous vehicles (e.g. almond oil, oily esters, ethyl alcohol, or fractionated vegetable oils), and preservatives (e.g. methyl or propyl-p-hydroxybenzoates or sorbic acid).
  • the preparations can also include flavoring, coloring and sweetening agents.
  • the composition can be presented as a dry product for constitution with water or another suitable vehicle.
  • composition may take the form of tablets, lozenges or fast dissolving films according to conventional protocols.
  • the compounds for use according to the present invention are conveniently delivered in the form of an aerosol spray from a pressurized pack or nebulizer (e.g. in PBS), with a suitable propellant, e.g., dichlorodifluoromethane, trichlorofluoromethane, dichlorotetrafluoromethane, carbon dioxide or other suitable gas.
  • a suitable propellant e.g., dichlorodifluoromethane, trichlorofluoromethane, dichlorotetrafluoromethane, carbon dioxide or other suitable gas.
  • a pressurized aerosol the dosage unit can be determined by providing a valve to deliver a metered amount.
  • Capsules and cartridges of, e.g., gelatin for use in an inhaler or insufflator can be formulated containing a powder mix of the compound and a suitable powder base such as lactose or starch.
  • the route of administration of the polypeptides of the invention is parenteral.
  • parenteral as used herein includes intravenous, intraarterial, intraperitoneal, intramuscular, subcutaneous, rectal or vaginal administration.
  • the intravenous form of parenteral administration is preferred. While all these forms of administration are clearly contemplated as being within the scope of the invention, a form for administration would be a solution for injection, in particular for intravenous or intraarterial injection or drip.
  • a suitable pharmaceutical composition for injection may comprise a buffer (e.g. acetate, phosphate or citrate buffer), a surfactant (e.g. polysorbate), optionally a stabilizer agent (e.g. human albumin), etc.
  • the polypeptides can be delivered directly to the site of the adverse cellular population thereby increasing the exposure of the diseased tissue to the therapeutic agent.
  • Preparations for parenteral administration include sterile aqueous or non-aqueous solutions, suspensions, and emulsions.
  • non-aqueous solvents are propylene glycol, polyethylene glycol, vegetable oils such as olive oil, and injectable organic esters such as ethyl oleate.
  • Aqueous carriers include water, alcoholic/aqueous solutions, emulsions or suspensions, including saline and buffered media.
  • pharmaceutically acceptable carriers include, but are not limited to, 0.01-0.1M and preferably 0.05M phosphate buffer or 0.8% saline.
  • Intravenous vehicles include sodium phosphate solutions, Ringer's dextrose, dextrose and sodium chloride, lactated Ringer's, or fixed oils.
  • Intravenous vehicles include fluid and nutrient replenishers, electrolyte replenishers, such as those based on Ringer's dextrose, and the like. Preservatives and other additives may also be present such as for example, antimicrobials, antioxidants, chelating agents, and inert gases and the like.
  • compositions suitable for injectable use include sterile aqueous solutions (where water soluble) or dispersions and sterile powders for the extemporaneous preparation of sterile injectable solutions or dispersions.
  • the composition must be sterile and should be fluid to the extent that easy syringability exists. It should be stable under the conditions of manufacture and storage and will preferably be preserved against the contaminating action of microorganisms, such as bacteria and fungi.
  • the carrier can be a solvent or dispersion medium containing, for example, water, ethanol, polyol (e.g., glycerol, propylene glycol, and liquid polyethylene glycol, and the like), and suitable mixtures thereof.
  • the proper fluidity can be maintained, for example, by the use of a coating such as lecithin, by the maintenance of the required particle size in the case of dispersion and by the use of surfactants.
  • Prevention of the action of microorganisms can be achieved by various antibacterial and antifungal agents, for example, parabens, chlorobutanol, phenol, ascorbic acid, thimerosal and the like.
  • isotonic agents for example, sugars, polyalcohols, such as mannitol, sorbitol, or sodium chloride in the composition.
  • Prolonged absorption of the injectable compositions can be brought about by including in the composition an agent which delays absorption, for example, aluminum monostearate and gelatin.
  • sterile injectable solutions can be prepared by incorporating an active compound (e.g., a polypeptide by itself or in combination with other active agents) in the required amount in an appropriate solvent with one or a combination of ingredients enumerated herein, as required, followed by filtered sterilization.
  • an active compound e.g., a polypeptide by itself or in combination with other active agents
  • dispersions are prepared by incorporating the active compound into a sterile vehicle, which contains a basic dispersion medium and the required other ingredients from those enumerated above.
  • the preferred methods of preparation are vacuum drying and freeze-drying, which yields a powder of an active ingredient plus any additional desired ingredient from a previously sterile-filtered solution thereof.
  • the preparations for injections are processed, filled into containers such as ampoules, bags, bottles, syringes or vials, and sealed under aseptic conditions according to methods known in the art. Further, the preparations may be packaged and sold in the form of a kit. Such articles of manufacture will preferably have labels or package inserts indicating that the associated compositions are useful for treating a subject suffering from, or predisposed to clotting disorders.
  • the pharmaceutical composition can also be formulated for rectal administration as a suppository or retention enema, e.g., containing conventional suppository bases such as cocoa butter or other glycerides.
  • Effective doses of the compositions of the present invention, for the treatment of conditions vary depending upon many different factors, including means of administration, target site, physiological state of the patient, whether the patient is human or an animal, other medications administered, and whether treatment is prophylactic or therapeutic.
  • the patient is a human but non-human mammals including transgenic mammals can also be treated.
  • Treatment dosages may be titrated using routine methods known to those of skill in the art to optimize safety and efficacy.
  • the dose of a biologically active moiety can range from about 25 to 100 IU/kg, e.g., 0.417 mg/kg to 1.67 mg/kg.
  • the dose of a biologically active moiety e.g., comprising FVIII
  • the dose of a biologically active moiety can range from about 25 to 65 IU/kg, e.g., 0.003125 mg/kg to 0.008125 mg/kg.
  • the dose of a biologically active moiety e.g., comprising FVII
  • Dosages can range from 1000 ug/kg to 0.1 ng/kg body weight. In one embodiment, the dosing range is 1 ug/kg to 100 ug/kg.
  • the protein can be administered continuously or at specific timed intervals.
  • In vitro assays may be employed to determine optimal dose ranges and/or schedules for administration.
  • In vitro assays that measure clotting factor activity are known in the art, e. g., STA-CLOT Vlla-rTF clotting assay.
  • effective doses may be extrapolated from dose-response curves obtained from animal models, e. g., a hemophiliac dog (Mount et al. 2002, Blood 99 (8): 2670).
  • Doses intermediate in the above ranges are also intended to be within the scope of the invention.
  • Subjects can be administered such doses daily, on alternative days, weekly or according to any other schedule determined by empirical analysis.
  • An exemplary treatment entails administration in multiple dosages over a prolonged period, for example, of at least six months.
  • two or more polypeptides may be administered simultaneously, in which case the dosage of each polypeptide administered falls within the ranges indicated.
  • Polypeptides of the invention can be administered on multiple occasions. Intervals between single dosages can be daily, weekly, monthly or yearly. Intervals can also be irregular as indicated by measuring blood levels of modified polypeptide or antigen in the patient. Alternatively, polypeptides can be administered as a sustained release formulation, in which case less frequent administration is required. Dosage and frequency vary depending on the half-life of the polypeptide in the patient.
  • compositions containing the polypeptides of the invention or a cocktail thereof are administered to a patient not already in the disease state to enhance the patient's resistance or minimize effects of disease. Such an amount is defined to be a “prophylactic effective dose.”
  • a relatively low dosage is administered at relatively infrequent intervals over a long period of time. Some patients continue to receive treatment for the rest of their lives.
  • Polypeptides of the invention can optionally be administered in combination with other agents that are effective in treating the disorder or condition in need of treatment (e.g., prophylactic or therapeutic).
  • the administration of polypeptides of the invention in conjunction or combination with an adjunct therapy means the sequential, simultaneous, coextensive, concurrent, concomitant or contemporaneous administration or application of the therapy and the disclosed polypeptides.
  • Those skilled in the art will appreciate that the administration or application of the various components of the combined therapeutic regimen may be timed to enhance the overall effectiveness of the treatment. A skilled artisan (e.g. a physician) would be readily be able to discern effective combined therapeutic regimens without undue experimentation based on the selected adjunct therapy and the teachings of the instant specification.
  • polypeptides of the instant invention may be used in conjunction or combination with an agent or agents (e.g. to provide a combined therapeutic regimen).
  • agents with which a polypeptide of the invention may be combined include agents that represent the current standard of care for a particular disorder being treated. Such agents may be chemical or biologic in nature.
  • biological or “biologic agent” refers to any pharmaceutically active agent made from living organisms and/or their products which is intended for use as a therapeutic.
  • the amount of agent to be used in combination with the polypeptides of the instant invention may vary by subject or may be administered according to what is known in the art. See for example, Bruce A Chabner et al., Antineoplastic Agents , in GOODMAN & GILMAN'S THE PHARMACOLOGICAL BASIS OF THERAPEUTICS 1233-1287 ((Joel G. Hardman et al., eds., 9 th ed. 1996). In another embodiment, an amount of such an agent consistent with the standard of care is administered.
  • the polypeptides of the present invention may be administered in a pharmaceutically effective amount for the in vivo treatment of clotting disorders.
  • the polypeptides of the invention can be formulated to facilitate administration and promote stability of the active agent.
  • pharmaceutical compositions in accordance with the present invention comprise a pharmaceutically acceptable, non-toxic, sterile carrier such as physiological saline, non-toxic buffers, preservatives and the like.
  • the pharmaceutical compositions of the present invention may be administered in single or multiple doses to provide for a pharmaceutically effective amount of the polypeptide.
  • a chimeric clotting factor of the invention can be administered as a nucleic acid molecule.
  • Nucleic acid molecules can be administered using techniques known in the art, including via vector, plasmid, liposome, DNA injection, electroporation, gene gun, intravenously injection or hepatic artery infusion. Vectors for use in gene therapy embodiments are known in the art.
  • the chimeric clotting factors of the invention may be administered to a human or other animal in accordance with the aforementioned methods of treatment in an amount sufficient to produce a therapeutic or prophylactic effect.
  • the chimeric proteins of the invention have many uses as will be recognized by one skilled in the art, including, but not limited to methods of treating a subject with a disease or condition.
  • the disease or condition can include, but is are not limited to, hemostatic disorders.
  • the invention relates to a method of treating a subject having a hemostatic disorder comprising administering a therapeutically effective amount of at least one chimeric clotting factor of the invention.
  • the chimeric clotting factors of the invention treat or prevent a hemostatic disorder by promoting the formation of a fibrin clot.
  • the chimeric clotting factor of the invention can activate any member of a coagulation cascade.
  • the clotting factor can be a participant in the extrinsic pathway, the intrinsic pathway or both.
  • a chimeric clotting factor of the invention can be used to treat hemostatic disorders, e.g., those known to be treatable with the particular clotting factor present in the chimeric clotting factor.
  • hemostatic disorders that may be treated by administration of the chimeric protein of the invention include, but are not limited to, hemophilia A, hemophilia B, von Willebrand's disease, Factor XI deficiency (PTA deficiency), Factor XII deficiency, as well as deficiencies or structural abnormalities in fibrinogen, prothrombin, Factor V, Factor VII, Factor X, or Factor XIII
  • the hemostatic disorder is an inherited disorder.
  • the subject has hemophilia A, and the chimeric protein comprises Factor VII or Factor VIIIa.
  • the subject has hemophilia A and the chimeric clotting factor comprises Factor VII or Factor VIIa.
  • the subject has hemophilia B and the chimeric clotting factor comprises Factor IX or Factor IXa.
  • the subject has hemophilia B and the chimeric protein comprises Factor VII or Factor VIIa.
  • the subject has inhibitory antibodies to Factor VII or Factor VIIIa and the chimeric clotting factor comprises Factor VII or Factor VIIa.
  • the subject has inhibitory antibodies against Factor IX or Factor IXa and the chimeric protein comprises Factor VII or Factor VIIa.
  • the chimeric clotting factor of the invention can be used to prophylactically treat a subject with a hemostatic disorder.
  • the chimeric clotting factor of the invention can be used to treat an acute bleeding episode in a subject with a hemostatic disorder.
  • the hemostatic disorder is the result of a deficiency in a clotting factor, e.g., Factor IX, Factor VIII.
  • a clotting factor e.g., Factor IX, Factor VIII.
  • the hemostatic disorder can be the result of a defective clotting factor.
  • the hemostatic disorder can be an acquired disorder.
  • the acquired disorder can result from an underlying secondary disease or condition.
  • the unrelated condition can be, as an example, but not as a limitation, cancer, an autoimmune disease, or pregnancy.
  • the acquired disorder can result from old age or from medication to treat an underlying secondary disorder (e.g. cancer chemotherapy).
  • the invention also relates to methods of treating a subject that does not have a hemostatic disorder or a secondary disease or condition resulting in acquisition of a hemostatic disorder.
  • the invention thus relates to a method of treating a subject in need of a general hemostatic agent comprising administering a therapeutically effective amount of at least one chimeric clotting factor of the invention.
  • the subject in need of a general hemostatic agent is undergoing, or is about to undergo, surgery.
  • the chimeric clotting factor of the invention can be administered prior to or after surgery as a prophylactic.
  • the chimeric clotting factor of the invention can be administered during or after surgery to control an acute bleeding episode.
  • the surgery can include, but is not limited to, liver transplantation, liver resection, or stem cell transplantation.
  • the chimeric clotting factor of the invention can be used to treat a subject having an acute bleeding episode who does not have a hemostatic disorder.
  • the acute bleeding episode can result from severe trauma, e.g., surgery, an automobile accident, wound, laceration gun shot, or any other traumatic event resulting in uncontrolled bleeding.
  • the practice of the present invention employs, unless otherwise indicated, conventional techniques of chemistry, biophysics, molecular biology, recombinant DNA technology, immunology (especially, e.g., antibody technology), and standard techniques in electrophoresis.
  • conventional techniques of chemistry, biophysics, molecular biology, recombinant DNA technology, immunology (especially, e.g., antibody technology), and standard techniques in electrophoresis See, e.g., Sambrook, Fritsch and Maniatis, Molecular Cloning: Cold Spring Harbor Laboratory Press (1989); Antibody Engineering Protocols (Methods in Molecular Biology), 510, Paul, S., Humana Pr (1996); Antibody Engineering: A Practical Approach (Practical Approach Series, 169), McCafferty, Ed., Irl Pr (1996); Antibodies: A Laboratory Manual, Harlow et al., C S. H. L. Press, Pub. (1999); and Current Protocols in Molecular Biology, eds. Ausubel et al.
  • the FVII-027 construct comprises cscFc for cleavage when processed during manufacture in a cell.
  • the construct comprises a targeting moiety, a scFv moiety that binds to GPIIbIIIa, MB9.
  • Plasmid (pSYN-FVII-027) was generated for the expression FVII-Fc and MB9-Fc heterodimer, where MB9 is a scFv previously shown to bind to receptor GPIIb/IIIa on activated platelets.
  • Protein from pSYN-FVII-027 is expressed in the cell as a single polypeptide where the C-terminus of the FVII-Fc subunit is linked to the N-terminus of the MB9-Fc subunit by a (GGGGS) 6x polypeptide linker.
  • RRRRS and RKRRKR sequences were inserted at the 5′ and 3′ end of the polypeptide linker, respectively, for intracellular cleavage by proprotein convertases following the last Arg at each sequence. Consequently, cells will express a 2 chain FVII-Fc/MB9-Fc heterodimer where the FVII-Fc chain has a RRRRS sequence at the C-terminus, but the remainder of the linker and the RKRRKR sequence have otherwise been removed.
  • HindIII-SalI-BpsEI-Fc-F AGTCAAGCTTGTCGACTCCGGAACTCCTGGGCGGACC BamHI-linker-Fc-R CATCGGATCCCCCGCCACCGGAACCTCCACCGCCTGATCCACCCCCACCT GATCCGCCGCCACCTTTACCCGGAGACAGGGAGAGG BclI-Fc-F CAGTCTTGATCAGACAAAACTCACACATGCCCACC scFc-EcoRI-R ACTGACGAATTCTCATTTACCCGGAGACAGGGAG HindIII-Kozak-FVII-F: CGACAAGCTTGCCGCCACCATGGTCTCCCAGGCCCTCAGG FVII-HC-BspEI-R: AGGAGTTCCGGAGCTGGGCACGGTGGGCATGTGTGAGTTTTGTCGGATCC CCCGCCACCGGAACCTCCACCGCCTGATCCACCCCCACCTGATCCGCCGC CACCGGACCCACCTCCGCCGGAG
  • a 50 ul PCR reaction was carried out with 25 pmol of HindIII-SalI-BpEI-Fc-F and BamHI-linker-Fc-R and template pSYN-Fc-001 using the following cycle: 95° C. 2 minutes; 30 cycles of (95° C. 30 seconds, 54° C. 30 seconds, 72° C. 1 minute).
  • the expected sized band ( ⁇ 700 bp) was gel purified with a Gel Extraction kit (Qiagen, Valencia, Calif.) and cloned into the HindIII and BamHI restriction sites of pBUDCE4 (Invitrogen, Carlsbad, Calif.) to generate intermediate pSYN-FVII-007.
  • Hindlll-SalI-BpEI-Fc-F and BamHI-linker-Fc-R amplify the Fc region starting at amino acid 221 (EU numbering) and add a HindIII and a SalI restriction enzyme site immediately upstream of site Fc region, as well as a DNA fragment encoding a (GGGGS) 4x linker followed by a BamHI site immediately downstream of the Fc coding region.
  • GGGGS DNA fragment encoding a 4x linker followed by a BamHI site immediately downstream of the Fc coding region.
  • a 50 ul reaction was carried out with 25 pmol of Bc1I-Fc-F and scFc-EcoRI-R, and template pSYN-Fc-011 using the same cycles as above.
  • the expected sized band ( ⁇ 700 bp) was gel purified as above, cut with restriction enzymes BamHI and EcoRI, and cloned in the Bc1I/EcoRI restriction sites of pSYN-FVII-007 to generate the intermediate plasmid pSYN-FVII-008.
  • the primer pair Bc1I-Fc-F and scFc-EcoRI-R amplifies the Fc region while adding a Ben and EcoRI restriction sites immediately upstream and downstream of the Fc coding region, respectively.
  • a 50 ul PCR reaction was carried out with 25 pmol of HindIII-Kozak-FVII-F and FVII—HC-BspEI-R and template pSYN-FVII-001 using the following cycle: 95° C. 2 minutes; 30 cycles of (95° C. 30 seconds, 55° C. 30 seconds, 72° C. 90 seconds).
  • the primer pair amplifies the FVII coding region while adding a DNA fragment at the 3′ end of the molecule encoding a (GGGGS) 6x polypeptide linker followed by a fragment of the Fc region ending at amino acid 221 (EU numbering).
  • HindIII-Kozak-FVII-F generates a HindIII restriction site at the 5′ of the molecule followed by a Kozak sequence directly upstream of the FVII coding region.
  • the FVII—HC-BspEI-R primer introduces DNA encoding the polypeptide linker as well as the Fc portion.
  • the expected sized band (1500 bp) was gel purified as above and cloned into the HindIII/BspEI sites of pSYN-FVII-008 to generate pSYN-FVII-011.
  • Genescript-FVII-027-1 consists of a DNA fragment encoding a portion of the Fc region (starting at nucleotide 1306, EU numbering) followed by the sequence RRRRS-(GGGGS) 6x -RKRRKR followed by a portion of the MB9 scFv (residues 1-142).
  • An EcoRI site was introduced in the coding sequence of MB9 using the degeneracy of the genetic code to preserve the proper amino acid sequence and overlaps the last 6 bases of Genescript-FVII-027-1.
  • the first 6 bases at the 5′ include a SapI site found within the Fc region.
  • Genescript-FVII-026-2 consists of a DNA fragment encoding a portion of the MB9 (residues 143-273) followed by a (GGGGS) 6x polypeptide linker followed by the Fc region and an EcoRI site.
  • An EcoRI site was introduced in the coding sequence of MB9 using the degeneracy of the genetic code to preserve the proper amino acid sequence and overlaps the first 6 bases of Genescript-FVII-026-2.
  • Genescript-FVII-027-1 was cloned into the SapI and EcoRI sites of pSYN-FVII-011 to generate pSYN-FVII-036.
  • Genescript-FVII-026-2 was cloned into the EcoRI site of pSYN-FVII-036 to generate pSYN-FVII-027. Correct orientation of the last cloning step was confirmed by restriction enzyme analysis and DNA sequencing.
  • the FVII-037 construct is made using an scFc scaffold which is not cleaved during processing.
  • the targeting moiety again the MB9 scFv which binds to GPIIbIIIa is attached to the c-terminus of the second Fc moiety.
  • Genescript-FVII-037 was outsourced (Genescript) This fragment comprises a portion of the Fc region (residues 434 to 447, EU numbering) followed by a (GGGGS)4x polypeptide linker and the MB9 scFv.
  • a SaI/PEcoRI fragment of Genescript-FVII-037 was subcloned into the SapI/EcoRI of pSYN-FVII-011 (refer to P0830) to generate and intermediate construct.
  • a SapI fragment from pSYN-FVII-011 was subcloned into the SapI sites of the intermediate construct to generate pSYN-FVII-037.
  • the FVII-041 construct was first made as an intermediate. Synthesis of DNA molecule Genescript-FVII-041 was outsourced (Genescript). This fragment was digested with SapI and cloned into SapI sites of pSYN-FVII-011 to generate pSYN-FVII-041. This process introduces a unique SalI site (residues 412-413 EU numbering, GTG GAC to GTC GAC) in the second Fc.
  • the FVII-041 construct was used as the starting material to generate several constructs that comprise targeting moieties which are peptides that bind to GPIb.
  • the PS4 peptide is used in the -044 construct, the OS1 peptide in the -045 construct, ad the OS2 peptide in the -046 construct.
  • an scFc scaffold is used and the peptides are attached via a linker to the C-terminus of the second Fc moiety.
  • Genescript-FVII-044, -045 and -046 was outsourced (Genescript). These DNA fragments were cleaved with SalI/EcoRI and subcloned into the SalI/EcoRI sites of pSYN-FVII-041 to generate pSYN-FVII-044, -045 and -046.
  • the FVII-043 construct was first made as an intermediate. Synthesis of DNA fragment Genescript-FVII-043 was outsourced (Genescript). This fragment comprises a DNA molecule encoding a portion of the Fc region (residues 232 to 447, EU numbering) followed by a (GGGGS)4x polypeptide linker and another portion of the Fc region (residues 221 to 238, EU numbering). This DNA fragment was digested with BspEI and RsrII and subcloned into the BspEI/RsrII sites of pSYN-FVII-042 to generate pSYN-FVII-050.
  • This process introduces a unique SalI site (residues 412-413 EU numbering, GTG GAC to GTC GAC) in the first Fc.
  • a HindIII/EcoRI fragment of pSYNFVII-050 was subcloned into the HindIII/EcoRI sites of pSYN-FVII-011 to generate p SYN-FVII-043.
  • the FVII-043 construct was used as the starting material to generate several constructs that comprise targeting moieties which are peptides that bind to GPIb.
  • the PS4 peptide is used in the -047 construct, the 0S1 peptide in the -048 construct, and the 0S2 peptide in the -049 construct.
  • an scFc scaffold is used and the peptides are interposed between the scFc linker and a linker which is attached to the N-terminus of the second Fc moiety.
  • Genescript-FVII-047, -048 and -049 was outsourced (Genescript).
  • a Sal/RsrII fragment from Genescript-FVII-047, -048 and -049 was subcloned into SalI/RsrII sites of pSYN-FVII-043 to generate pSYN-FVII-047, -048 and 049, respectively.
  • FVII-028 construct was first made as an intermediate. Synthesis of DNA fragment Genescript-FVII-028 was outsourced (Genescript). This fragment was cut with HindIII/XbaI and subcloned into pSYN-FVII-011 to generate p SYN-FVII-028.
  • the FVII-028 construct was used as the starting material to generate a construct that comprises a targeting moiety and employs a clotting factor that lacks a Gla domain.
  • amino acids 1-35 were removed from FVII and an RKRRKR insertion was added after residue R152 (WT FVII numbering) to facilitate intracellular activation.
  • the MB9 scFv served as the targeting moiety.
  • the FVII-024 construct is one in which the heavy and light chains of factor FVII are not contiguous in a single chain molecule.
  • the construct employs cscFc such that the cscFc linker is cleaved by proteases in the trans-Golgi network This cleavage results in linker removal as well as activation of FVII, resulting in the expression of activated FVIIaFc.
  • the coding sequence of FVII was obtained by reverse transcription coupled to polymerase chain reaction from a human liver mRNA library (Ambion, Austin, Tex.) using the following primers:
  • a 50 ⁇ l reaction was carried out with 10 pmol of each primer using the Superscript One-step RT-PCR with Platinum Taq system (Invitrogen, Carlsbad, Calif.) according to the manufacturer's standard protocol in a MJ thermocycler.
  • the cycle used was 50° C. for 30 minutes for the reverse transcription followed by denaturing at 94° C. for 2 minutes and 30 cycles of (94° C. 30 seconds, 53° C. 30 seconds, 72° C. 90 seconds) followed by 10 minutes at 72° C.
  • the expected sized band ( ⁇ 1400 bp) was gel-purified with a Gel Extraction kit (Qiagen, Valencia, Calif.) and cloned in pCR2.1 TOPO using the TOPO TA Cloning kit (Invitrogen, Carlsbad, Calif.) to produce the intermediate plasmid pSYN-FVII-001.
  • the FVII coding sequence was PCR-amplified using the following primers:
  • HindIII-Kozak-FVII-F CGACAAGCTTGCCGCCACCATGGTCTCCCAGGCCCTCAGG
  • BspeI-Fc-FVII-R CGACTCCGGAGCTGGGCACGGTGGGCATGTGTGAGTTTTGTCGGGAAATG GGGCTCGCAGG
  • the forward primer HindIII-Kozak-FVII-F adds a Hindlll restriction site followed by a Kozak sequence immediately upstream of the FVII coding region.
  • the reverse primer BspeI-Fc-FVII-R adds a fragment of the constant region of IgG1 (the Fc region) comprising amino acids 221-233 (EU numbering). This process also incorporates a BspEI restriction site at amino acids 231-233 using the degeneracy of the genetic code to preserve the correct amino acid sequence (EU numbering).
  • a 50 ul reaction was carried out with 15 pmol of each primer and template pSYN-FVII-001 using Platinum Pfx DNA Polymerase system according to manufacturer's protocol in a MJ Thermocycler using the following cycles: 95° C. 2 minutes; 30 cycles of (95° C. 15 seconds, 49° C. 30 seconds, 68° C. 90 seconds); 68° C. 10 minutes.
  • Plasmid pSYN-FIX-027 (pBUD FIXFc/Fc) was digested with Hindlll and BspEI and the expected sized band for the vector (approximately 5800 bp) was purified away from the FIX insert (expected size band approximately 1480 bp) with a Gel Extraction kit (Qiagen, Valencia, Calif.).
  • the PCR-amplified FVII sequence was subcloned into HindIII and EcoRI sites of the vector derived from pSYN-FIX-027 after removing the FIX insert. This generated pSYN-FVII-002 (pBUD FVIIFc/Fc).
  • a (GGGGS) 6x polypeptide linker was added between FVII and the Fc region coding sequences in pSYN-FVII-002 using the following primers:
  • FVII-linker-F CATCCCCAGCACGTACGTCC
  • FVII-Linker-R GGGCATGTGTGAGTTTTGTCTGATCCCCCGCCACCGGAACCTCCACCGCC TGATCCACCCCCACCTGATCCGCCGCCACCGGACCCACCTCCGCCGGAGC CACCGCCACCGGGAAATGGGGCTCGCAGGAGG
  • Fc-linker-F GACAAAACTCACACATGCCCACC
  • Fc-linker-R GCAGAATTCTCATTTACCCGGAG
  • Two 12 ⁇ l PCR reactions were carried out with either 12 pmol of FVII-linker-F and FVII-Linker-R (reaction 1) or Fc-linker-F and Fc-linker-R (reaction 2) using Expand High Fidelity System (Boehringer Mannheim, Indianapolis, Ind.) according to manufacturer's standard protocol in a MJ Thermocycler.
  • the first and second reactions were carried out with 1 ⁇ g of pSYN-FVII-002 as template using the following cycle: 94° C. 2 minutes; 14 cycles of (94° C. 30 seconds, 55° C. 30 seconds, 72° C. 2 minutes); 72° C. 10 minutes.
  • the expected sized bands (532 bp for reaction 1 and 670 bp for reaction 2) were gel purified with a Gel Extraction kit (Qiagen, Valencia, Calif.), then combined in a PCR reaction with 25 pmol of FVII-linker-F and Fc-linker-R as before, but with 30 rounds of amplification.
  • the expected sized band (1200 bp) was gel purified with a Gel Extraction kit (Qiagen, Valencia, Calif.) and digested with restriction enzymes KpnI and EcoRI.
  • the expected sized band (920 bp) was gel purified as before and cloned into the KpnI/EcoRI sites of pSYN-FVII-002 to generate pSYN-FVII-003 (pBUD FVIIFc/6x(GGGGS)/Fc).
  • Plasmid (pSYN-FVII-024) was generated for the expression of a two-chain heterodimer where one chain consists of the FVII light chain (residues 1-152) followed by a (GGGGS) 6x linker followed by the Fc region, while the other chain contains a FVII heavy chain (residues 153 to 406) followed by a (GGGGS) 6x linker followed by the Fc region.
  • the plasmid is designed to express the heterodimer as a single polypeptide where the C-terminus of the FVII heavy chain-linker-Fc chain is connected to the N-terminus of the heavy chain-linker-Fc chain by the following polypeptide sequence: RRRRS-(GGGGS) 6x -RKRRKR, where the RRRRS and RKRRKR sequences are proprotein convertase cleavage sites. Intracellular cleavage by proprotein convertases following the last Arg at each cleavage site can result in removal of the polypeptide linker.
  • a PCR reaction was performed with 25 pmol of primers Hindlll-SalI-BpEI-Fc-F and BamHI-linker(PACE1)-Fc-R and template pSYN-Fc-001 using Expand High Fidelity System (Boehringer Mannheim, Indianapolis, Ind.) according to manufacturer's standard protocol in a MJ Thermocycler. The following cycles were used: 95° C. 2 minutes; 30 cycles of (95° C. 30 seconds, 58° C. 30 seconds, and 72° C. 1 minute); 72° C. 10 minutes.
  • the correct sized band (approximately 730 bp) was gel purified as above and cloned into the HindIII/BamHI sites of pBUDCE4 vector (Invitrogen, Carlsbad, Calif.), generating pSYN-FVII-014.
  • PCR amplification with primers HindIII-SalI-BpEI-Fc-F and BamHI-linker(PACE1)-Fc-R generated a DNA fragment encoding a portion of the Fc region (Amino A X-Y) followed by an RRRRS sequence and (GGGGS) 2x polypeptide linker.
  • Primer HindIII-SalI-BpEI-Fc-F introduces a HindIII and SalI restriction site at the 5′ end of the molecule, while primer BamHI-linker(PACE1)-Fc-R introduces a BamHI at the 3′ end that overlaps the codons encoding the last 2 residues of the GGGGS linker (residues GS with codons GGA TCC).
  • Primers Hindlll-Kozak-FVII-F and BspEI-Fc-linker-FVIILC-R amplified a DNA fragment encoding the FVII light chain followed by a (GGGGS) 6x polypeptide linker and a portion of the Fc region up to amino acid 232 (EU numbering).
  • Primer HindIII-Kozak-FVII-F introduces a HindIII restriction site at the 5′ end of the molecule followed by a Kozak sequence while primer BspEI-Fc-linker-FVIILC-R adds a BspeI site at the 3′ end of the molecule.
  • a PCR reaction was carried out as above with primers BamHI-2 ⁇ link-pace-HC-F and Fc-EcoRI-R and template pSYN-FVII-003 with the following cycles: 95° C. 2 minutes; 30 cycles of (95° C. 30 seconds, 55° C. 30 seconds, and 72° C. 2 minute); 72° C. 7 minutes.
  • This PCR reaction generated a DNA molecule encoding a (GGGGS) 2x polypeptide linker followed by a RKRRKR sequence followed by the FVII heavy chain.
  • Primers BamHI-2 ⁇ link-pace-HC-F and Fc-EcoRI-R introduce a BamHI site and an EcoRI site at the 5′ and 3′ end of the molecule, respectively.
  • the expected sized band (approximately 1600 bp) was cloned into the BamHI and EcoRI sites of pSYN-FVII-023 to generate pSYN-FVII-024.
  • a silent mutation was introduced in the first Fc moiety of FVII-024 by PCR-based site-directed mutagenesis methods, resulting in the generation of a SalI site at DNA region encoding amino acids in position 412 and 413 (EU numbering). This generated the intermediate construct FVII-073.
  • constructs were cloned as described for pSYN-FVII-057 (outsourced synthesis of DNA from SalI to BsiWI and subcloned into pSYN-FVII-073).
  • the synthesis of the DNA sequence comprising nucleotides from the BamHI to BsiWI sites of pSYN-FVII-090 was outsourced. This DNA was subcloned into pSYN-FVII-061 by 3-way ligation (where the outsourced DNA was cut with BamHI/BsiWI and pSYN-FVII-061 with BamHI/BsiWI/NotI) to generate pSYN-FVII-090.
  • a triple point mutation (V158D, E296V and M298Q; mature FVII sequence numbering) was introduced into the FVII coding region of pSYN-FVII-090 by PCR-based site-directed mutagenesis to generate pSYN-FVII-115.
  • a DNA fragment comprising the 170 loop of trypsin was generated by PCR using pSYN-FVII-100 as template. This PCR reaction generated BsiWI and BspEI restriction sites at the 5′ and 3′, respectively. The DNA fragment was subcloned into the BsiWI/BspEI sites of pSYN-FVII-118 to generate pSYN-FVII-127.
  • HindIII/BspEI fragment from pSYN-FIX-030 was subcloned into the HindIII/BspEI sites of pSYN-FVII-011 to generate pSYN-FIX-042.
  • a HindIII/BspEI fragment from pSYN-FIX-030 (plasmid described in full in U.S. Pat. No. 7,566,565) was subcloned into the HindIII/BspEI sites of pSYN-FVII-066 to generate pSYN-FIX-068.
  • a BspEI-EcoRI fragment from pSYN-FIX-067 was subcloned into BspEI-EcoRI sites of pSYN-FIX-053 to generate pSYN-FIX-088.
  • a DNA fragment comprising the FIX coding region from the XbaI site to the C-terminus of the protein followed by a 6x(GGGGGS) linker, the SCE5 coding sequence and an EcoRI site was outsourced for synthesis and subcloned into the XbancoRI sites of pSYN-FIX-053 to generate pSYN-FIX-090.
  • the SCE5 sequence is set forth below:
  • a DNA fragment comprising a sequence encoding a 6x(GGGGS) linker followed by the SCE5 coding sequence was synthesized (outsourced) and cloned into the EcoRV/EcoRI sites of a pSYN-FVII-011 variant that had been previously modified to generate an EcoRV site at the C-terminus of the FVII coding region.
  • a DNA fragment was PCR amplified from pSYN-FVII-088, comprising the AP3 region and part of the linker. This PCR reaction generated BamHI and EcoRI sites at the 5′ and 3′ of the DNA fragment, respectively. This DNA fragment was subcloned into the BamHI/EcoRI sites of pSYN-FVII-011 to generate pSYN-FVII-125.
  • the coding sequence of human recombinant B-domain deleted FVIII was obtained by reverse transcription-polymerase chain reaction (RT-PCR) from human liver poly A RNA (Clontech) using FVIII-specific primers.
  • the FVIII sequence includes the native signal sequence for FVIII.
  • the B-domain deletion starts after serine 743 (S743; 2287 bp) and ends before glutamine 1638 (Q1638; 4969 bp) for a total deletion of 2682 bp (SQ version).
  • the coding sequence for human recombinant Fc was obtained by RT-PCR from a human leukocyte cDNA library (Clontech) using Fc specific primers. Primers were designed such that the B-domain deleted FVIII sequence was fused directly to the N-terminus of the Fc sequence with no intervening linker.
  • the FVIIIFc DNA sequence was cloned into the mammalian dual expression vector pBUDCE4.1 (Invitrogen) under control of the CMV promoter.
  • a second identical Fc sequence including the mouse Igk signal sequence was obtained by RT-PCR and cloned downstream of the second promoter, EF1 ⁇ , in the expression vector pBUDCE4.1. This final construct was designated pSYN-FVIII-013.
  • a second plasmid was created from similar constructs using PCR and standard molecular biology techniques, in order to express rFVIIIBDD-Fc-Fc in which the rFVIIIBDDFc coding sequence was fused to the second Fc sequence with a (GGGGS)4 linker, allowing for production of only the rFVIIIBDD-Fc monomer-dimer hybrid in transient transfection.
  • This construct was designated pSYN-FVIII-041.
  • a SalI/RsrII fragment from pSYN-FVII-066 was subcloned into pSYN-FVIII-049 to generate pSYN-FVIII-108.
  • the FVII-010 construct is one in which the heavy chain of factor VII was expressed in the context of an scFc scaffold and the light chain was expressed separately.
  • the FVII-013 construct is one in which the light chain was expressed in the context of an scFc scaffold and the heavy chain was expressed separately.
  • the heavy chain of FVII was expressed as an Fc fusion protein and the light chain of FVII was separately expressed as a separate Fc fusion protein.
  • the 039 construct was made in the context of an scFc scaffold.
  • the construct included the FVII light chain, the FXIa cleavage site, and the FVII heavy chain with a I153V mutation in linear sequence attached to the N-terminus of the first Fc moiety.
  • the 040 construct was also made in the context of an scFc scaffold.
  • the construct included the FVII light chain with an R152 deletion, the FXIa cleavage site, and the FVII heavy chain with an I153V mutation in linear sequence attached to the N-terminus of the first Fc moiety.
  • the DFTR cleavage sequence is a natural FXIa sequence found in FIX. In FIX, the DFTR sequence is followed by a valine, so an I152V mutation was introduced in pSYN-FVII-039, -040 to increase FXIa cleavage efficiency.
  • Genescript-FVII-039 and -040 was outsourced (Genescript).
  • An XbaI/BsiWI fragment from Genescript-FVII-039 and -040 was subcloned into XbaI/BsiWI sites of pSYN-FVII-011 to generate pSYN-FVII-039 and -040, respectively.
  • HEK-293-F cells were grown in suspension in Freestyle media (Invitrogen) supplemented with vitamin K3 (For FVII and FIX transfections only) (Sigma Aldrich, St. Louis, Mo.) to 2 ⁇ g/liter (growth media) as suspension cells at 37° C./10% CO 2 . Cells we subcultured every three to four days by seeding at cell density of 5 ⁇ 10 5 cell s/ml.
  • transfection media Twenty-four hours prior to transfection cells were seeded at a density of 7 ⁇ 10 5 cells/ml in growth media supplemented with LONGTM R3IGF-1 (Sigma Aldrich, St. Louis, Mo.) to 20 ⁇ g/liter (transfection media). On the day of transfection, a transfection solution was made with a volume equal to 5% of the total volume of the cell culture to be transfected. In the transfection solution DNA was added (final concentration 20 mg/L) to a freshly made solution of PEI (60 mg/L) in transfection media. The solution was swirled for 30 seconds and incubated for five minutes at room temperature before adding directly to the cell culture.
  • LONGTM R3IGF-1 Sigma Aldrich, St. Louis, Mo.
  • OptiCHO Invitrogen
  • OptiCHO Invitrogen
  • LONGTM R3IGF-1 200 mM L-glutamine was added to the cells.
  • the cell culture was allowed to grow as shown above and daily media samples were taken to assess protein expression.
  • the cells were spun down and the media filtered in preparation for protein purification or protein analysis by protein A pulldown/western blot.
  • FVIIFc molecules were purified from conditioned media using the following columns: 1) Anion exchange chromatography with pseudo-affinity elution (e.g. Q sepharose 4FF (GE Healthcare) followed by elution with varying levels of CaCl 2 to selectively elute the most active species), followed by 2) shFcRn (soluble human FcRn) affinity (NHS-coupled shFcRn with sepharose 4FF beads) chromatography, binding Fc-containing proteins at low pH (e.g. pH 6.2) and eluting at neutral pH (e.g. pH 8.0). In some cases, an additional step was included utilizing cation exchange chromatography with NaCl elution. These purification steps utilized standard methods known to those in the art to generate purified proteins of >95% purity by SEC analysis and SDS-PAGE. FIXFc proteins were purified as previously described in U.S. Pat. No. 7,566,565.
  • pseudo-affinity elution e.g. Q se
  • FVII-028 and -053 were purified from conditioned media using the following columns: 1) Hydrophobic interaction chromatography (e.g. Phenyl FF (high sub) (GE Healthcare)), followed by 2) Anion/cation exchange chromatography with salt elution. These purification steps utilized standard methods known to those in the art to generate purified proteins of >95% purity by SEC analysis and SDS-PAGE.
  • FIX-090 was purified through a 2-step chromatography process, first using an immunoaffinity chromatography step with an anti-GLA domain antibody, followed by anion exchange chromatography using pseudoaffinity elution similar to FIXFc proteins described above. These purification steps utilized standard methods known to those in the art to generate purified proteins of >95% purity by SEC analysis and SDS-PAGE.
  • FVIIIFc proteins were purified from clarified and chemically defined harvest media using a two or three column purification process, including a FVIII-specific affinity purification step (McCue 2009) followed by a combination of anion exchange with standard NaCl elution and/or shFcRn (soluble human FcRn) affinity (NHS-coupled shFcRn with sepharose 4FF beads) chromatography, binding Fc-containing proteins at low pH (e.g. pH 6.2) and eluting at neutral pH (e.g. pH 8.0).
  • FVIII-specific affinity purification step McCue 2009
  • shFcRn soluble human FcRn affinity affinity
  • NHS-coupled shFcRn with sepharose 4FF beads binding Fc-containing proteins at low pH (e.g. pH 6.2) and eluting at neutral pH (e.g. pH 8.0).
  • These purification steps utilized standard methods known to those in the art to generate purified proteins of >95% purity by SEC
  • Fractions eluted from the FcRn column containing FVIIFc were pooled, and total protein was concentrated to 4 mg/ml.
  • the CaCl 2 concentration was raised to 5 mM and the sample was incubated at 4° C. for 24 to 48 hours until at least 80% of FVIIFc was activated. The extent of activation was assessed by SDS PAGE ( FIG. 10 ).
  • FVIIaFc variants Specific activity of the FVIIaFc variants was determined by the soluble tissue factor method. Unlike lipidated full length tissue factor, soluble tissue factor (extracellular portion of tissue factor) can't activate FVII into FVIIa, but it acts as an activator of the conversion of factor X into factor Xa by FVIIa. To determine the specific activity of FVIIaFc variants, A STACLOT® FVII-rTF kit (Diagnostica Stago, Asnieres, France) was used following manufacturer's recommendations. Table 1 summarizes the data and shows comparable specific activity for all variants.
  • FVIIaFc variants based on the soluble tissue factor method FVIIaFc IU/nM FVII-011 991 FVII-024 929 FVII-027 790 FVII-037 1131 FVII-044 1300 FVII-045 906 FVII-046 1145 FVII-047 924 FVII-048 973 FVII-049 1130 FVII-053 929
  • ADP Sigma Aldrich, cat #A2754, stock 1 mM, working concentration 10 uM
  • SFLLRN peptide in-house synthesis, stock concentration 5 mg/ml (6.7 mM), working concentration 50 ug/ml (67 uM)
  • FVII antibody-FITC-labeled Affinity Biologicals SAFVII-APFTC
  • Platelet buffer 15 mM HEPES, 138 mM NaCl, 2.7 mM KCl, 1 mM MgCl2, 5 mM CaCl2, 5.5 mM dextrose and mg/ml BSA, pH 7.4
  • Prothrombin HTI, cat #HCP-0010, lot #Z0128, 4.8 mg/ml
  • TFPI American Diagnostica, cat #4900PC, lot #081031, 100 ug/ml
  • Thrombin Calibrator Thrombinoscope, cat #TS20.00
  • Platelet buffer 15 mM Hepes pH 7.4, 138 mM NaCl, 2.7 mM KCl, 1 mM MgCl2, 5.5 mM Dextrose, supplemented with 1 mg/ml BSA before using
  • ADP Sigma Aldrich, cat #A2754, stock 1 mM, working concentration 10 uM
  • SFLLRN peptide in-house synthesis, stock concentration 5 mg/ml (6.7 mM), working concentration 50 ug/ml (67 uM)
  • conditioned media from transfections of pSYN-FVII-010, 011, -013, -018, -003, -019-020 and -024 were subjected to protein A immunoprecipitation. Briefly, cell culture supernatant was mixed with approximately 50 ul of protein A-Sepharose 50% slurry and incubated at 4° C. with rocking for 1 hour, then centrifuged to pellet the protein A beads. Beads were washed twice by resuspending in 1 ml of PBS, spinning and aspirating.
  • the beads were resuspended with sodium dodecylsulfate-polyacrylamide gel electrophoresis (SDS-PAGE) under reducing or nonreducing conditions, heated for 5 minutes at 100° C., spun down and loaded on SDS-PAGE gels and run according to standard protocols. Gels were transferred to nitrocellulose membranes and Western blots were performed to detect the Fc region or the FVII light chain.
  • the antibody used was a goat anti-human IgG (Fc specific)-horseradish peroxidase conjugate (Pierce ImmunoPure antibody, catalog #31413).
  • FVII light chain detection an anti light chain monoclonal antibody was used (Green Mountain, clone 6MA-219).
  • the antibodies were diluted 1:15,000 (for Fc detection) or 1:200 (for light chain detection) in PBST (PBS with 0.1% Tween-20) with 5% nonfat dry milk and incubated with the membrane for 1 hour at room temperature. The membrane was then washed in PBST 3 times for 10 minutes and signal was detected by a chemiluminescent method for Fc detection.
  • FVII light chain detection the membrane was further incubated for one hour in a solution containing HRP-labeled goat anti-mouse antibody (Southern Biotech, #1010-05) diluted 1:5000 in PBST. The membrane was also washed in PBST 3 times for 10 minutes and the signal was detected by a chemiluminescent method. Chemiluminescent detection was performed using ECL Plus Western Blotting Detection System (Amersham Biosciences catalog #RPN2132) according to manufacturer's protocol. Signal was visualized in a Storm 840 Phosphorimager (Molecular Devices).
  • FVII-039 and FVII-040 by FXIa were characterized in vitro.
  • a 1.5 ⁇ M solution of FVII-039, FVII-040 or FVII-011 (non activated) containing 15 nM FXIa in 50 mM Tris-HCl, 100 mM NaCl, 10 mM CaCl 2 , pH 7.4 was incubated for 5 or 20 minutes, and cleavage of FVIIFc was determined by SDS PAGE under reducing conditions, followed by SYPRO Ruby staining (Invitrogen).
  • FXIa failed to cleave FVII-039, FVII-040 and nonactivated FVII-011, as shown in FIG. 28 .
  • FXIa Failure of FXIa to cleave FVII-039 and FVII-040 may have been caused by inaccessibility of the protease to the cleavage site by steric hindrance.
  • the sites will be placed upstream of the heavy chain in a structure where the heavy chain is not preceded by the light chain (Light chain-linker-Fc-scFclinker-FXIa/thrombin cleavage site-heavy chain-linker-Fc).
  • the heavy chain will comprise the I152V mutation.
  • a cscFc will be introduced so that the cell secretes a heterodimeric protein with the following structure: light chain-linker-Fc which is disulfide bonded to a second chain: FXIa/thrombin cleavage site-heavy chain-linker Fc.
  • FIG. 31 In order to improve the level of activation observed with the constructs shown in FIG. 28 , a second generation of activatable variants illustrated in FIG. 31 (similar in structure to those shown in FIG. 6E ) was used to increase accessibility of the cleavage site.
  • FXIa and thrombin cleavage sites were used for these constructs (See FIG. 31 ).
  • Constructs were transiently transfected as previously described. FVIIFc was captured from media with protein A. FVIIFc bound to the beads was put in buffer and FXIa or thrombin was added and incubated. FVIIFc was eluted from beads with SDS PAGE loading buffer at 100 C for 5 minutes.
  • the gel was loaded and western blot performed to detect Fc as previously described and the results are shown in FIG. 32 .
  • both the thrombin and factor XIa cleavage sites could be cleaved to yield FVII heavy and light chain molecules in the presence of the appropriate enzyme. Best cleavage was observed for constructs FVII-060 and FVII-061, while no cleavage was observed for the negative control (FVII-062) in the presence of thrombin.
  • constructs depicted in FIG. 33 were (FVII-090, FVII-089 and FVII-062) were cloned, expressed and purificatied as previously described (these proteins do not require activation). Due to a cloning error a “VVGGA” sequence was inserted after the ALRPR thrombin cleavage sequence of FVII-060 and FVII-061, but while this insertion would be expected to affect the activity, it would not be predicted to affect the assessment of cleavage by thrombin in SDS-PAGE based assays. This sequence was removed in FVII-089 and FVII-090.
  • FVII-090, FVII-089, FVII-062, or plasma-derived FVII (FVII) increasing concentrations of thrombin were added and incubated for 10 minutes at 37° C. The mixture was run on SDS-PAGE gel to determine cleavage by thrombin ( FIG. 33 ).
  • FVII light chain-Fc and FVII heavy chain-Fc were generated for FVII-089 and FVII-090 after incubation with thrombin.
  • the fact that there was no cleavage of plasma-derived FVII or the FVII-062 negative control by thrombin shows specificity. No significant difference in cleavage efficiency was observed for FVII-089 and FVII-090.
  • Thrombin generation assays were used to measure activity of activatable variant FVII-090.
  • a thrombin generation assays in FVIII-deficient platelet-rich plasma was performed as previously described, but replacing clotting factors and platelets with FVIII-deficient platelet-rich plasma.
  • the results depicted in FIG. 34 are from an assay in which thrombin generation was activated with 50 nM of FVIIaFc. As shown in FIG. 34 , thrombin is generated by 50 nM of FVIIaFc.
  • FVII-090 (not FVII-062, the negative control) to 50 nM of FVIIaFc results in a significant increase in thrombin generation, suggesting that FVI-090 becomes activated by thrombin generated by FVIIaFc.
  • FVII-115 An additional high specific activity version of Factor VII, FVII-115, was constructed.
  • the 170 loop is wild type, but there are three point mutations in the heavy chain of FVII, V158D, E296V and M298Q.
  • FVII-100 and FVII-115 are illustrated in FIG. 41 .
  • FVII-011(wild type FVIIaFc) is 10,000 IU/mg.
  • FVII-090 has a specific activity of 0.32 IU/mg,
  • FVII-100 has a specific activity of 0.25 IU/mg, and
  • FVII-115 has a specific activity of 14 IU/mg.
  • each of the activatable forms is essentially inactive in this assay.
  • such high specific activity variants have the potential to be more efficacious, but also to be more susceptible to inhibition by proteins such as antithrombin. This inhibition depends on FVIIa being active; therefore, high specific activity variants which are activatable (dosed as nonactive proteins) should be more resistant to antithrombin inhibition while having the potential to have high specific activity once activated at the site of injury.
  • Thrombin generation assays were used to measure activity of activatable variant FVII-090 and high specific activity variant FVII-100. As set forth previously herein, thrombin generation was tested in a reconstituted system with human platelets, Factor X, Factor V, prothrombin, antithrombin and tissue-factor pathway inhibitor. Activity was measured with or without 5 nM thrombin activation.
  • FIG. 36 activity of FVII-090 is enhanced in the presence of thrombin, suggesting activation of FVII-090 by thrombin.
  • activity is significantly increased in the context of the high specific activity variant FVII-100 with thrombin activation.
  • High activity with longer initiation time for FVII-100 in the absence of thrombin suggests that residual levels of tissue factor, thrombin or contact pathway activation can generate enough thrombin to activate FVII-100 without exogenous addition of thrombin.
  • FIG. 37 shows that similar results were obtained for the other high specific activity variant, FVII-115.
  • chromogenic assays were used to measure FVII activity.
  • One of the assays used measures the amidolytic activity of FVIIaFc by measuring the cleavage of a chromogenic substrate by FVIIa.
  • Another of these measures the FX activation activity by measuring the ability of FVIIa to activate FX, as determined by measuring levels of a chromogenic substrate that is cleaved by activated FX (FXa).
  • the chromogenic substrate Chromozyme t-PA was used. FVIIa cleaves this substrate in a dose dependent manner. The substrate is also cleaved by thrombin, but the cleavage by thrombin can be inhibited by hirudin (data not shown).
  • amidolytic activity of the activatable variants can be measured following thrombin activation and there is increased amidolytic activity for the high specific activity variants as compared to FVII-090.
  • hirudin is added to inhibit thrombin cleavage of the chromogenic substrate. In this manner, the thrombin does not interfere with the ability to detect FVIIa activity.
  • FVIIa The activation of FX by FVIIa is also enhanced in the high specific activity FVII activatable variants.
  • substrate S2765 was used to measure activation of FX by FVIIa. This chromogenic substrate is also recognized by FX.
  • 10 uM of FX was incubated with FVIIaFc for 15 minutes and the reaction was quenched with EDTA.
  • FIG. 39 shows the results of the control experiment which demonstrates that FX activation by FVIIaFc can be detected.
  • the experiment shown in FIG. 40 shows that there is an increase in FX activation activity for the high specific activity activatable variant FVII-100.
  • FVIIFc 100 nM
  • thrombin 100 nM
  • Hirudin was added to inhibit the thrombin.
  • FX (10 uM) was added and incubated for 15 minutes at 37C, followed by EDTA to inhibit the reaction.
  • S2765 substrate was added and FXa generation was detected by monitoring substrate cleavage.
  • Monomeric Fc Molecules can also be Synthesized in Activatable Form
  • FVII-118 an ALRPR cleavage site was inserted between the light chain and heavy chain.
  • FVII-119 the sequence GGGGS-ALRPR was inserted between the light chain and heavy chain.
  • FVII-127 the construct was made like FVII-118, but with the same high specific activity mutation used in FVII-100. The specific activity of the non-activated purified forms of these constructs was tested in a soluble tissue factor assay and compared to FVII-011 (wild type FVIIaFc which had an activity of 10,000 IU/mg).
  • FVII-118 had an activity of 4.5 IU/mg and FVII-127 had an activity of 1.8 IU/mg, demonstrating that these molecules had essentially no activity in their activatable form.
  • the cleavage site in an activatable construct can be cleaved in the context of both the monomer and heterodimer Fc molecules.
  • the decrease in the intensity of the nonactivated FVIIFc band with increasing thrombin concentration is similar for the FVII-118, FVII-119, and FVII-090 constructs.
  • FVII-127 Another activatable monomeric construct, FVII-127, was made and tested.
  • FVII-127 has the backbone of FVII-118, but the same 170 loop substitution used in FVII-100 to confer high specific activity.
  • the activity of FVII-127 is significantly increased as compared to FVII-118 lacking the high specific activity amino acid substitution.
  • High activity with longer initiation time for FVII-127 in the absence of thrombin suggests that residual levels of tissue factor, thrombin or contact pathway activation can generate enough thrombin to activate FVII-127 without exogenous addition of thrombin.
  • FVII-127 activity is accelerated by thrombin.
  • constructs illustrated in FIG. 44A were cloned, transiently expressed, purified and activated as previously described.
  • FVII-066 was cotrasfected with PC5 to fully process the cscFc linker, described in the protein sequence, connecting the first Fc moiety to the platelet targeting moiety.
  • These constructs employed the targeting moiety SCE5, a scFv against the active conformation of GPIIbIIIa.
  • SCE5 has been shown to crossreact with mouse and human receptor.
  • the SCE5 targeting moiety was placed at the N-terminus (FVII-066) or C terminus (FVII-067) of the second Fc moiety of FVIIaFc.
  • FVIIaFc FVII-011
  • NOVOSEVEN® NOVOSEVEN®
  • FIG. 44B these proteins were tested by thrombin generation assays in FVIII-deficient human plasma as previously described. These experiments revealed increased rates of thrombin generation for all the proteins containing the SCE5 targeting moiety relative to the controls. The highest rates of thrombin generation were observed for FVII-066, followed by FVII-094 and FVII-067, suggesting that the placement of the SCE5 targeting moiety can have a significant effect on the activity of the protein.
  • construct FVII-027 illustrated in FIG. 12A was cloned, expressed (with PC5 cotransfection to fully process the cscFc linker, described in the protein sequence, connecting the first Fc moiety to the platelet targeting moiety), purified and activated as previously described.
  • This construct employs the targeting moiety MB9, a scFv that has been shown to bind to the active conformation of GPIIbIlla.
  • FACS assays were performed as previously described to assess binding to activated platelets, and FVII-027 was shown to bind to activated platelets with higher affinity than the FVII-011 control ( FIG. 12B ).
  • FIGS. 13A, 13B and 13C Thrombin generation assays were performed with reconstituted purified human proteins and platelets as previously described ( FIGS. 13A, 13B and 13C ).
  • FVII-027 showed increased rates of thrombin generation relative to the controls.
  • FIG. 13D illustrates that FVII-027 has four times more activity than FVII-011 or NOVOSEVEN®, based on thrombin generation assays.
  • FIGS. 14A and 14B illustrate that the enhanced platelet binding and thrombin generation activity of FVII-027 were abrogated by PAC1, an antibody that competes with MB9 for binding to the activated form of GPIIbIIIa, demonstrating the effects are mediated by the interaction of MB9 with the activated form of GPIIbIlla.
  • the MB9 targeting moiety was also placed at the C-terminus of the second Fc moiety of FVIIaFc to generate FVII-037 illustrated in FIG. 15 .
  • Thombin generation assays in a FVIII-deficient reconstituted system with platelets revealed increased rates of thrombin generation for FVII-037 relative to the NOVOSEVEN® control ( FIGS. 16A, 16B, and 16C ).
  • constructs illustrated in FIG. 45A were cloned, expressed, purified and activated as previously described.
  • FVII-088 was cotransfected with PC5 to fully process the cscFc linker, described in the protein sequence, connecting the first Fc moiety to the platelet targeting moiety.
  • FVII-088 and FVII-125 employed the AP3 targeting moiety, a scFv that binds to both active and nonactive conformations of human GPIIbIIIa. The results in FIG.
  • Rotation Thromboelastometry is another method to evaluate platelet-targeted FVIIa constructs, since it allows for the characterization of several coagulation parameters in whole blood (in the presence of platelets).
  • the ability of FVII-088 and wild type recombinant FVIIaFc (rFVIIaFc) to form firm and stable clots was evaluated by ROTEM with Calcium Chloride as activator (NATEM) following manufacturer's recommendations. Hemophilia A blood from a human donor was spiked with FVIIFc to a final concentration of 100, 30 or 10 nM. The NATEM reaction was initiated by the addition of CaCl 2 .
  • Coagulation parameters including Clotting Time (relates to coagulation initiation time), Clot Formation Time (relates to rates of coagulation) and Alpha Angle (relates to rates of coagulation) were assessed as shown in FIG. 30 .
  • FVII-088 showed a significant reduction in the Clotting Time and Clot Forming Time and an increase in the alpha angle relative to wild type rFVIIaFc, consistent with enhanced coagulation kinetics for FVII-088. These data demonstrate that FVII-088 has enhanced activity relative to wild type FVIIaFc in agreement with the thrombin generation assay data.
  • FIG. 46A The constructs illustrated in FIG. 46A were cloned, expressed, purified and activated as previously described. These proteins were made using peptides that bind to platelet receptor GPIb-alpha (found in both activated and nonactivated platelets), specifically PS4, OS1, and OS2 as platelet targeting moieties. In making these molecules the peptide was attached to either the N or the C terminus of the second Fc moiety of the construct.
  • the FVII-044 construct employed the PS4 peptide attached to the C terminus of the second Fc moiety of the construct;
  • FVII-045 employed the OS1 peptide attached to the C terminus of the second Fc moiety of the construct;
  • the FVII-046 construct employed the 0S2 molecule attached to the C terminus of the second Fc moiety of the construct.
  • the FVII-047 construct employed the PS4 peptide attached to the N terminus of the second Fc moiety of the construct; the FVII-048 molecule employed the 0S1 peptide attached to the N-terminus of the second Fc moiety of the construct; and the FVII-049 molecule employed the OS2 peptide attached to the N-terminus of the second Fc moiety of the construct.
  • Thrombin generation assays were performed using FVIII-deficient platelet rich plasma as previously described. As shown in FIG.
  • FIG. 47A shows that the FVII-045 construct may be marginally better than the FVII-048 construct in this assay, but that again both the N and C terminal fusions are better than the NOVOSEVEN® control.
  • FIG. 47B shows that the FVII-045 construct may be marginally better than the FVII-048 construct in this assay, but that again both the N and C terminal fusions are better than the NOVOSEVEN® control.
  • FIG. 48 shows the increase in the activity associated with that peptide when recombinantly fused to FVIIaFc.
  • FIG. 48 shows the binding of FVII-049, FVII-048 and wild type FVIIaFc (FVII-011 control) to activated platelets as determined by FACS as well as the affinity for the targeting peptides reported in Bernard et al. Biochemistry 2008. 47:4674-4682.
  • FACS data revealed increased affinity of FVII-045 and FVII-048 for platelets relative to the FVII-011 control
  • FVIII-041 is wild type FVIIIFc
  • FVIII-108 has a SCE5 platelet targeting moiety at the N-terminus of the second Fc moiety.
  • FVIII-108 was cotransfected with PC5 to fully process the cscFc linker, described in the protein sequence, connecting the first Fc moiety to the platelet targeting moiety.
  • These proteins were tested in thrombin generation assays using FVIII deficient platelet rich plasma as previously described, but in addition the thrombin generation assay was also activated with tissue factor As shown in FIG. 49B , no significant improvement was seen using the targeted version of FVIIIFc. It is noteworthy that the thrombin generation assays described herein measure thrombin generation on the surface of platelets and, therefore, are an accurate measure of activity.
  • FVIIaFc illustrated in FIG. 21 was generated.
  • This protein has the MB9 scFv at the N-terminus and a deletion that removes the Gla domain.
  • FVII-053 contains an RKRRKR sequence inserted between the light and heavy chain for intracellular activation.
  • FVII-053 was transiently expressed (cotransfected with PC5 for processing of the RKRRKR sequence which results in activation of the protein) and purified as previously described.
  • Thrombin generation assays with purified components and platelets reveal that FVII-053 has some activity ( FIGS. 22A, 22B, 22C, and 22D ), even though this activity is compromised relative to the FVII-011 control ( FIG. 22D ).
  • FIGS. 23A and 23B show how the PAC1 antibody, which competes with MB9 for GPIIbIIIa binding, inhibits thrombin generation activity associated with FVII-053, suggesting that platelet targeting is important for activity.
  • Another construct identical to FVII-053, but without the RKRRKR insertion was generated (FVII-028) and tested in a Pk study in the nonactivated together with nonactivated FVII-011.
  • the terminal half-life of the targeted, Gla-less FVII-028 molecule was nearly three times longer (20.3 hours) than that of the FVII-011 control (7.1 hours), suggesting that removing the Gla domain increases the terminal half-life of FVIIFc.
  • FIX-068 was cotransfected with PC5 to fully process the cscFc linker, described in the protein sequence, connecting the first Fc moiety to the platelet targeting moiety.
  • FIX-068 has the SCE5 platelet targeting moiety at the N-terminus of the second Fc moiety, while FIX-088 has SCE5 at the C-terminus of the second Fc moiety.
  • FIX-090 is a FIX construct without an Fc domain and has the SCE5 moiety attached at the C-terminus of the FIX protein.
  • FIX-042 is a FIXFc as a single chain Fc without a targeting moiety and was made as a control.
  • BENEFIX® (Pfizer) was also used as a control. To remove trace amounts of activated FIX (FIXa) from the BENEFIX® sample that cause misleading results in thrombin generation assays, the BENEFIX® sample was treated with the irreversible active site inhibitor glutamyl-glycyl-arginyl-chloromethylketone (Hematologic Technologies). BENEFIX® was incubated with an excess amount of the inhibitor for 180 minutes at room temperature. The sample was then dialyzed to remove unbound inhibitor. The treated BENEFIX® is hereafter referred to as BENEFIX®.
  • 51C illustrates that both FIX-068 and FIX-088 have at least 4 times more activity than FIX-042 as measured by thrombin generation. Since the specific activity of FIX-042 is higher than FIX-068 and FIX-088, the increased activity observed in the thrombin generation assays may be underestimated, and therefore the increased activity by platelet targeting may be greater than 4-fold.
  • FIG. 52A shows increased activity relative to BENEFIX®, suggesting that targeting FIX to platelets in the absence of Fc also increases activity.
  • FIG. 52B shows that the activity of FIX-090 is at least 4 times that of BENEFIX®. Since both FIX-090 and BENEFIX® have similar specific activities, the 4-fold increase in activity in thrombin generations assays must be caused by the platelet targeting effect.
  • the FIX-089 construct illustrated in FIG. 53A was cloned, transiently expressed and purified as previously described.
  • the molecule comprises the 0S1 peptide, which binds to GPIb-alpha receptor, attached to the N-terminus of the second Fc moiety of the construct.
  • the specific activity of the FIX-089 construct was 2.4 IU/nmol as compared to 6 IU/nmol for the control FIX-042 molecule.
  • FIG. 53B the FIX-089 molecule is more active than the FIX-042 control in thrombin generation assays with FIX-platelet rich plasma; this is particularly evident at limiting concentrations of FIX.
  • FIG. 53C demonstrates that FIX-089 is roughly 4-times stronger than FIX-042 as measured by thrombin generation, while having a lower specific activity. This further suggests that targeting to GPIb increases the activity of FIXFc.
  • FVII-027 amino acid sequence Signal sequence is shown in dotted underline, propeptide is double underlined, linker region connecting FVII or MB9 to Fc region is underlined, and linker with proprotein convertase processing sites is shown in bold
  • FVII-037 amino acid sequence Signal sequence is shown in dotted underline, propeptide is double underlined, linker region connecting FVII or MB9 to Fc region is underlined, and linker connecting both Fcs sites is shown in bold
  • FVII-053 amino acid sequence Signal sequence is shown in dotted underline, linker region connecting FVII to Fc region is underlined, linker connecting both Fcs sites is shown in bold, and MB9 is italicized
  • APGQGLEWMG WINPNSGGTN YAQKFQGWVT MTRDTSISTA YMELSRLRSD DTAVYYCARG RALYNRNDRS PNWFDPWGQG TLVTVSSGSA SAPTLKLEEG EFSEARVQAV LTQPPSVSVA PGQTARITCG GNNIGSKSVQ WYQQKPGQAP VLVVYDDSDR PSGIPERFSG SNSGNMATLT ISRVEAGDEA DYYCQVWDSS SDHVVFGGGT KLTVLGQPKA APSVTLFPPS AAARTKLFWI SYSDGDQCAS SPCQNGGSCK DQLQSYICFC LPAFEGRNCE THKDDQLICV NENGGCEQYC SDHTGTKRSC RCHEGYSLLA DGVSCTPTVE YPCGKIPILE KRNASKPQGR RKRRKRIVGG KVCPKGECPW QVLLLVNGAQ LCGGTLINTI WVVSAAHCFD KIK
  • FVII-044 amino acid sequence Signal sequence is shown in dotted underline, propeptide is double underlined, linker region connecting FVII or PS4 to Fc region is underlined, linker connecting both Fcs sites is shown in bold, and PS4 peptide is italicized
  • FVII-045 amino acid sequence Signal sequence is shown in dotted underline, propeptide is double underlined, linker region connecting FVII or OS1 to Fc region is underlined, linker connecting both Fcs sites is shown in bold, and OS1 peptide is italicized
  • FVII-046 amino acid sequence Signal sequence is shown in dotted underline, propeptide is double underlined, linker region connecting FVII or OS2 to Fc region is underlined, linker connecting both Fcs sites is shown in bold, and OS2 peptide is italicized
  • FVII-047 amino acid sequence Signal sequence is shown in dotted underline, propeptide is double underlined, linker region connecting FVII or PS4 to Fc regions is underlined, and PS4 peptide is italicized
  • FVII-048 amino acid sequence Signal sequence is shown in dotted underline, propeptide is double underlined, linker region connecting FVII or OS1 to Fc regions is underlined, and OS1 peptide is italicized
  • FVII-049 amino acid sequence Signal sequence is shown in dotted underline, propeptide is double underlined, linker region connecting FVII or OS2 to Fc regions is underlined, and OS2 peptide is italicized
  • FVII-011 amino acid sequence Signal sequence is shown in dotted underline, propeptide is double underlined, Gla domain is italicized, linker region connecting FVII to Fc region is underlined, and linker connecting both Fcs sites is shown in bold
  • B domain deleted FVIII amino acid sequence Signal peptide underlined; 14 amino acid linker (containing the remaining B domain) between the HC and LC sequence is double underlined, with the 5743/Q1638 fusion site indicated in bold.
  • ERECMEEKCS FEEAREVFEN TERTTEFWKQ YVDGDQCESN PCLNGGSCKD DINSYECWCT FGFEGKNCEL DVTCNIKNGR CEQFCKNSAD NKVVCSCTEG YRLAENQKSC EPAVPFPCGR VSVSQTSKLT RAETVFPDVD YVNSTEAETI LDNITQSTQS FNDFTRVVGG EDAKPGQFPW QVVLNGKVDA FCGGSIVNEK WIVTAAHCVE TGVKITVVAG EHNIEETEHT EQKRNVIRII PHHNYNAAIN KYNHDIALLE LDEPLVLNSY VTPICIADKE YTNIFLKFGS GYVSGWGRVF HKGRSALVLQ YLRVPLVDRA TCLRSTKFTI YNNMFCAGFH EGGRDSCQGD SGGPHVTEVE GTSFLTGIIS WGEECAMKGK YGIYTKVSRY VNWIKEKTKL
  • FVII-066 amino acid sequence Signal sequence is shown in dotted underline, propeptide is double underlined, linker region connecting FVII or SCE5 to Fc region is underlined, and linker with proprotein convertase processing sites is shown in bold
  • FVII-057 amino acid sequence Signal sequence is shown in dotted underline, propeptide is double underlined, linker region connecting FVII light chain or heavy chain to Fc region is underlined, linker region connecting the Fc and the Factor XIa cleavage site is shown in bold, and the Factor XIa cleavage site is shown in dashed underline
  • FVII-058 amino acid sequence Signal sequence is shown in dotted underline, propeptide is double underlined, linker region connecting FVII light chain or heavy chain to Fc region is underlined, linker region connecting the Fc and the thrombin cleavage site is shown in bold, and the thrombin cleavage site is shown in dashed underline
  • FVII-059 amino acid sequence Signal sequence is shown in dotted underline, propeptide is double underlined, linker region connecting FVII light chain or heavy chain to Fc region is underlined, linker region connecting the Fc and the thrombin cleavage site is shown in bold, and the thrombin cleavage site is shown in dashed underline
  • FVII-060 amino acid sequence Signal sequence is shown in dotted underline, propeptide is double underlined, linker region connecting FVII light chain or heavy chain to Fc region is underlined, linker region connecting the Fc and the thrombin cleavage site is shown in bold, and the thrombin cleavage site is shown in dashed underline
  • FVII-061 amino acid sequence Signal sequence is shown in dotted underline, propeptide is double underlined, linker region connecting FVII light chain or heavy chain to Fc region is underlined, linker region connecting the Fc and the thrombin cleavage site is shown in bold, and the thrombin cleavage site is shown in dashed underline
  • FVII-062 amino acid sequence Signal sequence is shown in dotted underline, propeptide is double underlined, linker region connecting FVIIa light chain or heavy chain to Fc region is underlined, and linker region connecting the Fc and the FVIIa heavy chain is shown in bold
  • FVII-090 amino acid sequence Signal sequence is shown in dotted underline, propeptide is double underlined, linker region connecting FVII light chain or heavy chain to Fc region is underlined, linker region connecting the Fc and the thrombin cleavage site is shown in bold, and the thrombin cleavage site is shown in dashed underline
  • FVII-100 amino acid sequence Signal sequence is shown in dotted underline, propeptide is double underlined, linker region connecting FVII light chain or heavy chain to Fc region is underlined, linker region connecting the Fc and the thrombin cleavage site is shown in bold, the thrombin cleavage site is shown in dashed underline, and the trypsin 170 loop region is wave underlined
  • FVII-115 amino acid sequence Signal sequence is shown in dotted underline, propeptide is double underlined, linker region connecting FVII light chain or heavy chain to Fc region is underlined, linker region connecting the Fc and the thrombin cleavage site is shown in bold, the thrombin cleavage site is shown in dashed underline, and the three point mutations in FVIIa (V158D, E296V and M298Q) are in bold and underlined
  • FVII-118 amino acid sequence Signal sequence is shown in dotted underline, propeptide is double underlined, the thrombin cleavage site is shown in dashed underline, the linker region connecting FVII heavy chain to Fc region is underlined, and the linker region connecting the Fc regions is shown in bold
  • FVII-119 amino acid sequence Signal sequence is shown in dotted underline, propeptide is double underlined, the thrombin cleavage site with GGGS linker is shown in dashed underline, the linker region connecting FVII heavy chain to Fc region is underlined, and the linker region connecting the Fc regions is shown in bold
  • FVII-127 amino acid sequence Signal sequence is shown in dotted underline, propeptide is double underlined, the thrombin cleavage site is shown in dashed underline, the trypsin 170 loop region is wave underlined, the linker region connecting FVII heavy chain to Fc region is underlined, and the linker region connecting the Fc regions is shown in bold
  • FVII-125 amino acid sequence Signal sequence is shown in dotted underline, propeptide is double underlined, and linker region connecting FVII to AP3 is bold, and AP3 scFv is italicized
  • FVII-067 amino acid sequence Signal sequence is shown in dotted underline, propeptide is double underlined, linker region connecting FVIIa to Fc region is underlined, linker connecting both Fc regions is dashed underlined and linker connecting the Fc region to SCE5 is in bold
  • FVII-094 amino acid sequence Signal sequence is shown in dotted underline, propeptide is double underlined, and linker region connecting FVII to SCE5 is underlined
  • FVII-028 amino acid sequence Signal sequence is shown in dotted underline, linker region connecting FVII to Fc region is underlined, linker connecting both Fcs sites is shown in bold, and MB9 is italicized
  • FVII-039 amino acid sequence Signal sequence is shown in dotted underline, propeptide is double underlined, the FXIa cleavage site is shown in dashed underline, the linker region connecting FVII heavy chain to Fc region is underlined, and the linker region connecting the Fc regions is shown in bold
  • FVII-040 amino acid sequence Signal sequence is shown in dotted underline, propeptide is double underlined, the FXIa cleavage site is shown in dashed underline, the linker region connecting FVII heavy chain to Fc region is underlined, and the linker region connecting the Fc regions is shown in bold
  • FIX-042 amino acid sequence Signal sequence is shown in dotted underline, propeptide is double underlined, and linker region connecting the Fc regions is underlined
  • ERECMEEKCS FEEAREVFEN TERTTEFWKQ YVDGDQCESN PCLNGGSCKD DINSYECWCP 121 FGFEGKNCEL DVTCNIKNGR CEQFCKNSAD NKVVCSCTEG YRLAENQKSC EPAVPFPCGR 181 VSVSQTSKLT RAETVFPDVD YVNSTEAETI LDNITQSTQS FNDFTRVVGG EDAKPGQFPW 241 QVVLNGKVDA FCGGSIVNEK WIVTAAHCVE TGVKITVVAG EHNIEETEHT EQKRNVIRII 301 PHHNYNAAIN KYNHDIALLE LDEPLVLNSY VTPICIADKE YTNIFLKFGS GYVSGWGRVF 361 HKGRSALVLQ YLRVPLVDRA TCLRSTKFTI YNNMFCAGFH EGGRDSCQGD SGGPHVTEVE 421 GTSFLTGIIS WGEECAMKGK
  • FIX-068 amino acid sequence Signal sequence is shown in dotted underline, propeptide is double underlined, linker region connecting SCE5 to Fc region is underlined, and linker with proprotein convertase processing sites is shown in bold
  • ERECMEEKCS FEEAREVFEN TERTTEFWKQ YVDGDQCESN PCLNGGSCKD DINSYECWCP 121 FGFEGKNCEL DVTCNIKNGR CEQFCKNSAD NKVVCSCTEG YRLAENQKSC EPAVPFPCGR 181 VSVSQTSKLT RAETVFPDVD YVNSTEAETI LDNITQSTQS FNDFTRVVGG EDAKPGQFPW 241 QVVLNGKVDA FCGGSIVNEK WIVTAAHCVE TGVKITVVAG EHNIEETEHT EQKRNVIRII 301 PHHNYNAAIN KYNHDIALLE LDEPLVLNSY VTPICIADKE YTNIFLKFGS GYVSGWGRVF 361 HKGRSALVLQ YLRVPLVDRA TCLRSTKFTI YNNMFCAGFH EGGRDSCQGD SGGPHVTEVE 421 GTSFLTGIIS WGEECAMKGK
  • FIX-088 amino acid sequence Signal sequence is shown in dotted underline, propeptide is double underlined, linker connecting both Fc regions is underlined and linker connecting the Fc region to SCE5 is in bold
  • ERECMEEKCS FEEAREVFEN TERTTEFWKQ YVDGDQCESN PCLNGGSCKD DINSYECWCP 121 FGFEGKNCEL DVTCNIKNGR CEQFCKNSAD NKVVCSCTEG YRLAENQKSC EPAVPFPCGR 161 VSVSQTSKLT RAETVFPDVD YVNSTEAETI LDNITQSTQS FNDFTRVVGG EDAKPGQFPW 241 QVVLNGKVDA FCGGSIVNEK WIVTAAHCVE TGVKITVVAG EHNIEETEHT EQKRNVIRII 301 PHHNYNAAIN KYNHDIALLE LDEPLVLNSY VTPICIADKE YTNIFLKFGS GYVSGWGRVF 361 HKGRSALVLQ YLRVPLVDRA TCLRSTKFTI YNNMFCAGFH EGGRDSCQGD SGGPHVTEVE 421 GTSFLTGIIS WGEECAMKGK
  • FIX-089 amino acid sequence Signal sequence is shown in dotted underline, propeptide is double underlined, linker regions connecting OS1 to Fc regions are underlined, and OS1 peptide is italicized
  • ERECMEEKCS FEEAREVFEN TERTTEFWKQ YVDGDQCESN PCLNGGSCKD DINSYECWCP 121 FGFEGKNCEL DVTCNIKNGR CEQFCKNSAD NKVVCSCTEG YRLAENQKSC EPAVPFPCGR 181 VSVSQTSKLT RAETVFPDVD YVNSTEAETI LDNITQSTQS FNDFTRVVGG EDAKPGQFPW 241 QVVLNGKVDA FCGGSIVNEK WIVTAAHCVE TGVKITVVAG EHNIEETEHT EQKRNVIRII 301 PHHNYNAAIN KYNHDIALLE LDEPLVLNSY VTPICIADKE YTNIFLKFGS GYVSGWGRVF 361 HKGRSALVLQ YLRVPLVDRA TCLRSTKFTI YNNMFCAGFH EGGRDSCQGD SGGPHVTEVE 421 GTSFLTGIIS WGEECAMKGK
  • FIX-90 amino acid sequence Signal sequence is shown in dotted underline, propeptide is double underlined, and linker regions connecting FIX to SCE5 is underlined
  • FVII-088 amino acid sequence Signal sequence is shown in dotted underline, propeptide is double underlined, linker region connecting FVII or AP3 to Fc region is underlined, the AP3 scFv italicized, and linker with proprotein convertase processing sites is shown in bold
  • FVIII-041 amino acid sequence Signal sequence is shown in dotted underline, and linker region connecting the Fc regions is underlined
  • FVIII-108 amino acid sequence Signal sequence is shown in dotted underline, linker region connecting SCE5 to Fc region is underlined, and linker with proprotein convertase processing sites is shown in bold
  • FVIII-049 amino acid sequence Signal sequence is shown in dotted underline, and linker with proprotein convertase processing sites is shown in bold

Abstract

Chimeric clotting factors which localize the therapeutic to sites of coagulation (e.g., by being targeted to platelets or being activatable at sites of coagulation), have reduced clearance rates, have improved manufacturability, have reduced thrombogenicity, have enhanced activity, or have more than one of these characteristics are described as are methods for making chimeric clotting factors and methods for improving hemostasis using these clotting factors.

Description

    REFERENCE TO EARLIER FILED APPLICATIONS
  • This application is a continuation of U.S. application Ser. No. 13/809,289, which is the national phase application of International Application No. PCT/US2011/043597, filed Jul. 11, 2011 and published as WO 2012/006633, which claims the benefit of U.S. Provisional Application Nos. 61/363,183, filed Jul. 9, 2010; 61/363,186, filed Jul. 9, 2010; 61/442,055, filed Feb. 11, 2011; 61/442,150, filed Feb. 11, 2011; 61/442,029, filed Feb. 11, 2011; 61/467,880, filed Mar. 25, 2011; and 61/491,762, filed May 31, 2011, all of which are incorporated herein by reference in their entireties.
  • REFERENCE TO SEQUENCE LISTING SUBMITTED ELECTRONICALLY VIA EFS-WEB
  • The content of the electronically submitted sequence listing (Name: 2159_3750008_SEQUENCE_LISTING.txt, Size: 603,490 bytes; and Date of Creation: Jul. 27, 2016) was originally submitted in the International Application No. PCT/US2011/043597 and is incorporated herein by reference in its entirety.
  • BACKGROUND OF THE INVENTION
  • Initiation of the extrinsic clotting pathway is mediated by the formation of a complex between tissue factor, which is exposed as a result of injury to a vessel wall, and Factor VIIa. This complex then converts Factors IX and X to their active forms. Factor Xa converts limited amounts of prothrombin to thrombin on the tissue factor-bearing cell. This resulting thrombin is then able to diffuse away from the tissue-factor bearing cell and activate platelets, and Factors V and VIII, making Factors Va and VIIIa. During the propagation phase of coagulation, Factor Xa is generated by Factor IXa (in complex with factor VIIIa) on the surface of activated platelets. Factor Xa, in complex with the cofactor Factor Va, activates prothrombin into thrombin, generating a thrombin burst. The cascade culminates in the conversion of fibrinogen to fibrin by thrombin, which results in the formation of a fibrin clot. Factor VII and tissue factor are key players in the initiation of blood coagulation.
  • Factor VII is a plasma glycoprotein that circulates in blood as a single-chain zymogen. The zymogen is catalytically inactive. Although single-chain Factor VII may be converted to two-chain Factor VIIa by a variety of factors in vitro, Factor Xa is an important physiological activator of Factor VII. The conversion of zymogen Factor VII into the activated two-chain molecule occurs by cleavage of the peptide bond linking the Arginine residue at amino acid position 152 and the Ile residue at amino acid position 153. In the presence of tissue factor, phospholipids and calcium ions, the two-chain Factor VIIa activates Factor X or Factor IX. Factor VIIa is thought to be the physiologic initiator of the clotting cascade by acting at the surface of a TF-bearing cell, typically a damaged endothelial cell, and generating the initial amount of thrombin that then diffuses to platelets to activate them and prime them for the propagation phase of thrombin generation. Therapeutically, recombinant FVIIa acts by activating Factor X on the surface of activated platelets, bypassing the need for FIXa or FVIIIa to generate a thrombin burst during the propagation phase of coagulation. Since FVIIa has relatively low affinity for platelets, recombinant FVIIa is dosed at supra-physiological levels. This process is thought be tissue factor-independent.
  • Human factor IX circulates as a single-chain glycoprotein (mol wt 57,000). It is present in plasma as a zymogen and is converted to a serine protease, Factor IXaβ (more commonly referred to as FIXa), by Factor XIa (activated plasma thromboplastin antecedent) in the presence of calcium ions. In the activation reaction, two internal peptide bonds are hydrolyzed in Factor IX. These cleavages occur at a specific arginyl-alanine peptide bond and a specific arginyl-valine peptide bond. This results in the release of an activation peptide (mol wt approximately equal to 11,000) from the internal region of the precursor molecule and the generation of Factor IXaβ (mol wt approximately equal to 46,000). Factor IXalβ is composed of a light chain (mol wt approximately equal to 18,000) and a heavy chain (mol wt approximately equal to 28,000), and these chains are held together by a disulfide bond.
  • Factor X is also synthesized as a single-chain polypeptide containing the light and heavy chains connected by an Arg-Lys-Arg tripeptide. The single-chain molecule is then converted to the light and heavy chains by cleavage of two (or more) internal peptide bonds.
  • In plasma, these two chains are linked together by a disulfide bond, forming Factor X. Activated Factor X, Factor Xa, participates in the final common pathway whereby prothrombin is converted to thrombin, which in turn converts fibrinogen to fibrin.
  • Clotting factors have been administered to patients to improve hemostasis for some time. The advent of recombinant DNA technology has significantly improved treatment for patients with clotting disorders, allowing for the development of safe and consistent protein therapeutics. For example, recombinant activated factor VII has become widely used for the treatment of major bleeding, such as that which occurs in patients having haemophilia A or B, deficiency of coagulation Factors XI or VII, defective platelet function, thrombocytopenia, or von Willebrand's disease. Recombinant factor IX is therapeutically useful as well.
  • Although such recombinant molecules are effective, there is a need for improved versions which localize the therapeutic to sites of coagulation, have improved pharmacokinetic properties, have reduced clearance rates, have improved manufacturability, have reduced thrombogenicity, or have enhanced activity, or more than one of these characteristics.
  • SUMMARY OF THE INVENTION
  • The instant invention relates to chimeric clotting factors which have enhanced activity. The present invention features inter alia methods for making chimeric clotting factors, the chimeric clotting factors made using these methods, and methods for improving hemostasis using these clotting factors. The chimeric clotting factors of the invention possess enhanced pharmacokinetic properties, have reduced clearance rates, have improved manufacturability, have reduced thrombogenicity, have enhanced activity, or more than one of these characteristics. In one embodiment, improved clotting factors of the invention have increased activity where needed, e.g., by targeting the clotting factor to platelets or by being present in a subject in an activatable form (a non-naturally occurring activatable form) that is activated at the site of clot formation.
  • In one aspect, the invention pertains to a chimeric clotting factor which comprises a clotting factor selected from the group consisting of FVII, FIX and FX and a targeting moiety which binds to platelets and optionally a spacer moiety between the clotting factor and the targeting moiety.
  • In one embodiment, the clotting factor comprises a structure represented by the formula A B C, wherein A is the clotting factor; wherein B is a spacer moiety; and wherein C is at least one targeting moiety which binds to platelets.
  • In one embodiment, the clotting factor comprises a structure from amino terminus to carboxy terminus represented by a formula selected from the group consisting of: A B C; C B A
  • In one embodiment, the clotting factor exhibits increased generation of thrombin in the presence of platelets as compared to an appropriate control lacking the at least one targeting moiety.
  • In one embodiment, the clotting factor comprises a scaffold moiety and, optionally, a second spacer moiety.
  • In one embodiment, the clotting factor further comprises D and E, wherein D is a spacer moiety; and E is a scaffold moiety and wherein the chimeric clotting factor comprises a structure from amino terminus to carboxy terminus represented by a formula selected from the group consisting of: A B C D E; A D E B C; E D A B C; C B A D E; E D C B A; and C B E D A.
  • In one embodiment, E is a dimeric Fc region comprising a first Fc moiety, F1 and a second Fc moiety, F2.
  • In one embodiment, the clotting factor is expressed as a polypeptide comprising a cleavable scFc (cscFc) linker interposed between two Fc moieties, wherein the cscFc linker is adjacent to at least one enzymatic cleavage site which results in cleavage of the cscFc polypeptide linker.
  • In one embodiment, the cscFc linker is adjacent to at least one enzymatic cleavage site which results in cleavage of the cscFc linker.
  • In one embodiment, the chimeric clotting factor of claim 9, wherein the at least one enzymatic cleavage site is an intracellular processing site.
  • In one embodiment, wherein the polypeptide linker is flanked by two enzymatic cleavage sites which are recognized by the same or by different enzymes.
  • In one embodiment, the polypeptide linker has a length of about 10 to about 50 amino acids.
  • In one embodiment, the polypeptide linker has a length of about 20 to about 30 amino acids.
  • In one embodiment, the polypeptide linker comprises a gly/ser peptide.
  • In one embodiment, the gly/ser peptide is of the formula (Gly4Ser)n, or Ser(Gly4Ser)n wherein n is a positive integer selected from the group consisting of 1, 2, 3, 4, 5, 6, 7, 8, 9 and 10. In one embodiment, the (Gly4 Ser)n linker is selected from the group consisting of (Gly4 Ser)6, Ser(Gly4 Ser)6, (Gly4 Ser)4 and Ser(Gly4 Ser)4.
  • In one embodiment, the clotting factor comprises two polypeptide chains.
  • In one embodiment, the chimeric clotting factor has a structure selected from the group consisting of: A linked to F1 via a spacer moiety and C linked to F2; A linked to F1 via a spacer moiety and C linked to F2 via a spacer moiety; A linked to F1 and C is linked to F2 via a spacer moiety; A linked to F1 via a spacer moiety and C is linked to F2 via a spacer moiety.
  • In one embodiment, a chimeric clotting factor comprises two polypeptides wherein the first polypeptide comprises the moieties A B F1; A B F1; A B F1; or A B F1 D C and the second polypeptide comprises the moieties C F2; C D F2; F2 D C; or F2 D C, wherein the two polypeptide chains form an Fc region.
  • In one embodiment, the targeting moiety is fused to at least one of the polypeptide chains of the Fc region. In one embodiment, the targeting moiety is fused to at least one of F1 and F2 directly. In one embodiment, the targeting moiety is fused to at least one of F1 and F2 via a spacer moiety. In one embodiment, the targeting moiety is fused to at least one of F1 and F2 via a cleavable linker. In one embodiment, the targeting moiety is selected from the group consisting of: an antibody molecule, an antigen binding fragment of an antibody molecule, an scFv molecule, a receptor binding portion of a receptor, a peptide. In one embodiment, wherein the targeting moiety binds to resting platelets. In one embodiment, the targeting moiety selectively binds to activated platelets. In one embodiment, the targeting moiety selectively binds to a target selected from the group consisting of: GPIba, GPVI, and the nonactive form of GPIIb/IIIa. In one embodiment, the targeting moiety selectively binds to a target selected from the group consisting of: the active form of GPIIb/IIIa, P selectin, GMP-33, LAMP-1, LAMP-2, CD40L, and LOX-1. In one embodiment, the targeting moiety binds to the GPIb complex In one embodiment, the targeting moiety is a peptide selected from the group consisting of: PS4, OS1, and OS2. In one embodiment, the targeting moiety comprises an antibody variable regions from an antibody selected from the group consisting of: SCE5, MB9, and AP3.
  • In one embodiment, wherein the clotting factor is Factor VII.
  • In one embodiment, the clotting factor is a high specific activity variant of Factor VII. In one embodiment, the clotting factor is Factor IX. In one embodiment, the clotting factor is a high specific activity variant of Factor IX. In one embodiment, the clotting factor is Factor X. In one embodiment, clotting factor is a high specific activity variant of Factor X.
  • In one embodiment, the clotting factor is secreted by a cell in active form. In one embodiment, the clotting factor is activated in vivo.
  • In one embodiment, the chimeric clotting factor comprises a heterologous enzymatic cleavage site not naturally present in the clotting factor.
  • In one embodiment, the enzymatic cleavage site is genetically fused to the amino terminus of the heavy chain moiety of the clotting factor.
  • In one embodiment, the clotting factor comprises a scaffold moiety is a protein molecule which increases the hydrodynamic radius of the chimeric clotting factor. In one embodiment, the scaffold moiety, if present, is selected from the group consisting of albumin and XTEN®
  • In another aspect, the invention pertains to a polypeptide comprising FVII, which
  • FVII comprises a heterologous enzymatic cleavage site activatable by a component of the clotting cascade.
  • In one embodiment, the polypeptide comprises a scaffold moiety and, optionally, a spacer moiety.
  • In one embodiment, the scaffold moiety is a dimeric Fc region comprising a first Fc moiety, F1 and a second Fc moiety, F2.
  • In one embodiment, the clotting factor comprises two polypeptide chains.
  • In one embodiment, the chimeric clotting factor has a structure selected from the group consisting of: the clotting factor linked to the first Fc moiety via a spacer moiety; the clotting factor linked to the second Fc moiety via a spacer moiety; the clotting factor is directly linked to F1; and the clotting factor is directly linked to F2.
  • In one embodiment, the chimeric clotting factor further comprises a targeting moiety.
  • In one embodiment, the chimeric clotting factor is synthesized as a single polypeptide chain comprising a cscFc linker. In one embodiment, the cscFc linker is linked to (e.g., directly linked or adjacent to) at least one enzymatic cleavage site which results in cleavage of the linker.
  • In one embodiment, the at least one enzymatic cleavage site is an intracellular processing site. In one embodiment, the cscFc linker is flanked by two enzymatic cleavage sites which are recognized by the same or by different enzymes. In one embodiment, the cscFc linker has a length of about 10 to about 50 amino acids. In one embodiment, the cscFc linker has a length of about 20 to about 30 amino acids.
  • In one embodiment, the cscFc linker comprises a gly/ser peptide.
  • In one embodiment, wherein the gly/ser peptide is of the formula (Gly4Ser)n, or Ser(Gly4Ser)n wherein n is a positive integer selected from the group consisting of 1, 2, 3, 4, 5, 6, 7, 8, 9 and 10. In one embodiment, the (Gly4 Ser)n linker is selected from the group consisting of (Gly4 Ser)6, Ser(Gly4 Ser)6, (Gly4 Ser)4 and Ser(Gly4 Ser)4.
  • In one embodiment, the clotting factor is a high specific activity variant of Factor VII. In one embodiment, the heterologous enzymatic cleavage site present in the chimeric clotting factor is cleaved at the site of clot formation. In one embodiment, the cleavage site is selected from the group consisting of: a factor XIa cleavage site, a factor Xa cleavage site, and a thrombin cleavage site. In one embodiment, the enzymatic cleavage site is genetically fused to the amino terminus of the heavy chain moiety of the clotting factor.
  • In one embodiment, the targeting moiety binds to resting platelets. In one embodiment, the targeting moiety selectively binds to activated platelets.
  • In one embodiment, wherein the targeting moiety selectively binds to a target selected from the group consisting of: GPIba, GPVI, and the nonactive form of GPIIb/IIIa. In one embodiment, the targeting moiety selectively binds to a target selected from the group consisting of: the active form of GPIIb/IIIa, P selectin, GMP-33, LAMP-1, LAMP-2, CD40L, and LOX-1.
  • In one embodiment, the scaffold moiety is a protein molecule which increases the hydrodynamic radius of the chimeric clotting factor. In one embodiment, the scaffold moiety, if present, is selected from the group consisting of albumin and XTEN®
  • In one aspect the invention pertains to a linear sequence of moieties from amino terminus to carboxy terminus selected from the group consisting of: A B C; C B A; A B C D E; A D E B C, E D A B C, C B A D E, E D C B A, C B E D A, wherein A an activatable clotting factor, B is absent or is a linker, C is a targeting moiety, D is absent or is a linker, and E is a scaffold moiety.
  • In one embodiment, the clotting factor comprises a light and heavy chain of a clotting factor and each of the light and heavy chains are expressed as separate polypeptide chains.
  • In one embodiment, the invention pertains to a nucleic acid molecule encoding a chimeric clotting factor of the invention. In one embodiment, the nucleic acid molecule is present in a vector. In one embodiment, the vector further comprises a nucleotide sequence encoding an enzyme which cleaves at least one of the enzymatic cleavage sites.
  • In one embodiment, the invention pertains to a host cell comprising the expression vector of the invention. In one embodiment, the host cell expresses an enzyme capable of intracellular processing. In one embodiment, the enzyme is endogenous to the cell. In one embodiment, the enzyme is heterologous to the cell.
  • In another embodiment, the invention pertains to a method for producing a chimeric clotting factor comprising culturing the host cell in culture and recovering the chimeric clotting factor from the medium.
  • In another embodiment, the invention pertains to a processed, heterodimeric polypeptide comprising two polypeptide chains, wherein said processed, heterodimeric polypeptide is made by expressing the vector in a cell cultured in cell culture medium and isolating the mature, heterodimeric polypeptide from the culture medium.
  • In one embodiment, the invention pertains to a composition comprising a chimeric clotting factor and a pharmaceutically acceptable carrier.
  • In another embodiment, the invention pertains to a composition comprising the nucleic acid molecule of the invention and a pharmaceutically acceptable carrier.
  • In another embodiment, the invention pertains to a method for improving hemostasis in a subject, comprising administering the composition of the invention.
  • in one aspect, the invention pertains to an chimeric clotting factor which comprises a light chain moiety and a heavy chain moiety of a clotting factor, and at least one targeting moiety, wherein said targeting moiety (i) specifically binds to platelets, (ii) is not interposed between the light and heavy chains of the clotting factor, and wherein said chimeric clotting factor exhibits increased generation of thrombin in the presence of platelets as compared to an appropriate control lacking the at least one targeting moiety.
  • In another aspect, the invention pertains to an chimeric clotting factor, which comprises the moieties A-B-C-D-E in linear sequence wherein A is a clotting factor, an activatable clotting factor, or an activated clotting factor; B is absent or is a linker; C is a targeting moiety; D is absent or is a linker; and E is absent or is a scaffold moiety.
  • In still another aspect, the invention pertains to an chimeric clotting factor, which comprises a linear sequence of moieties from amino terminus to carboxy terminus selected from the group consisting of: ABC; ABCDE; ADEBC, EDABC, CBADE, EDCBA, CBEDA, wherein A is a clotting factor, an activatable clotting factor or an activated clotting factor, B is absent or is a linker, C is a targeting moiety, D is absent or is a linker, and E is a scaffold moiety.
  • In yet another aspect, the invention pertains to an chimeric clotting factor, which comprises a linear sequence of moieties from amino terminus to carboxy terminus selected from the group consisting of: ABF1:F2; ABF1:CDF2; ABF1:F2DC, ABF1DC:F2DC, wherein A is a clotting factor, an activatable clotting factor or an activated clotting factor, B is absent or is a linker, C is a targeting moiety, D is absent or is a linker, and F1 and F2 are each an Fc moiety, and: represents dimerization mediated by the F1 and F2 chains of two polypeptide chains.
  • In still another aspect, the invention pertains to an chimeric clotting factor which comprises a light chain moiety and a heavy chain moiety of a clotting factor, and at least one targeting moiety, wherein said targeting moiety specifically binds to platelets, wherein the chimeric clotting factor comprises a disulfide linked Fc region which comprises two polypeptide chains.
  • BRIEF DESCRIPTION OF THE DRAWINGS
  • FIG. 1 illustrates exemplary chimeric clotting factor constructs comprising a targeting domain. These exemplary constructs comprise an Fc region.
  • FIG. 2 illustrates exemplary chimeric clotting factor constructs comprising a targeting domain. These exemplary constructs comprise a cleavable single chain Fc (cscFc) in which the scFc linker is processed by a cell in which it is expressed to form a two chain Fc region.
  • FIG. 3 illustrates exemplary chimeric clotting factor constructs which comprise a targeting domain and wherein the clotting factor moiety lacks a Gla domain. These exemplary constructs comprise an Fc region.
  • FIG. 4 illustrates exemplary chimeric clotting factor constructs which comprise a targeting domain and wherein the clotting factor moiety lacks a Gla domain. These exemplary constructs comprise a cleavable single chain Fc (cscFc) in which the scFc linker is processed by a cell in which it is expressed to form a two chain Fc region.
  • FIG. 5 illustrates exemplary chimeric clotting factor constructs which are activated (e.g., after activation in vitro or by separate expression of the light and heavy chains of the clotting factor) or which are activatable, i.e., comprise a moiety which is cleavable in vivo at the site of a clot (see panels D and E). These exemplary constructs comprise an Fc region. Constructs A, B, and C did not express well in early experiments.
  • FIG. 6 illustrates exemplary chimeric clotting factor constructs which are activated (e.g., after activation in vitro or by separate expression of the light and heavy chains of the clotting factor) or which are activatable, i.e., comprise a moiety which is cleavable in vivo at the site of a clot. These exemplary constructs comprise a cleavable single chain Fc (cscFc) in which the scFc linker is processed by a cell in which it is expressed to form a two chain Fc region.
  • FIG. 7 illustrates exemplary chimeric clotting factor constructs comprising a targeting domain.
  • FIG. 8 illustrates exemplary chimeric clotting factor constructs which comprise a targeting domain and wherein the clotting factor moiety lacks a Gla domain.
  • FIG. 9 illustrates exemplary chimeric clotting factor constructs which are activated (e.g., after activation in vitro or by separate expression of the light and heavy chains of the clotting factor) or which are activatable, i.e., comprise a moiety which is cleavable in vivo at the site of a clot.
  • FIG. 10 shows SDS PAGE for purification and activation of FVII-011.
  • FIG. 11 shows SDS PAGE for purification of active FVII-053.
  • FIG. 12A shows schematics of FVII-011 and FVII-102, and FIG. 12B shows binding of FVIII-011 and FVII-027 to activated platelets determined by FACS.
  • FIGS. 13A, 13B, 13C, and 13D show thrombin generation assays to measure activity of FVII-027, FVII-011 and NOVOSEVEN® in the presence of activated platelets.
  • FIG. 14A shows that PAC-1 eliminates increased binding to platelets associated with FVII-027, and FIG. 14B shows that PAC-1 eliminates increased rates of thrombin generation associated with FVII-027.
  • FIG. 15 shows constructs used in a thrombin generation assay to measure activity of FVII-037 and NOVOSEVEN® in the presence of activated platelets.
  • FIGS. 16A, 16B, and 16C show thrombin generation assays to measure activity of FVII-037 and NOVOSEVEN® in the presence of activated platelets.
  • FIG. 17 shows the constructs used in the thrombin generation assay to measure activity of FVII-044, FVII-045, FVII-046, FVII-011 and NOVOSEVEN® in the presence of activated platelets shown in FIGS. 18A, 18B, 18C, and 18D.
  • FIGS. 18A, 18B, 18C, and 18D show thrombin generation assays to measure activity of FVII-044, FVII-045, FVII-046, FVII-011 and NOVOSEVEN® in the presence of activated platelets.
  • FIG. 19 shows the constructs used in the thrombin generation assay to measure activity of FVII-047, FVII-048, FVII-049, FVII-011 and NOVOSEVEN® in the presence of activated platelets shown in FIGS. 20A, 20B, 20C, and 20D.
  • FIGS. 20A, 20B, 20C, and 20D show thrombin generation assays to measure activity of FVII-047, FVII-048, FVII-049, FVII-011 and NOVOSEVEN® in the presence of activated platelets.
  • FIG. 21 shows the construct used in the thrombin generation assay to measure activity of FVII-053 and FVII-011 in the presence of activated platelets shown in FIGS. 22A, 22B, 22C, and 22D.
  • FIGS. 22A, 22B, 22C, and 22D show thrombin generation assays to measure activity of FVII-053 and FVII-011 in the presence of activated platelets.
  • FIGS. 23A and 23B show that PAC-1 eliminates increased rate of thrombin generation associated with FVII-053.
  • FIG. 24 shows the constructs used in the Western blot analysis of FVIIFc species following transient transfection of HEK 293 cells and protein A pulldown shown in FIG. 25.
  • FIG. 25 shows Western blot analysis of FVIIFc species following transient transfection of HEK 293 cells and protein A pulldown.
  • FIG. 26 shows Western blot of protein A immunoprecipitation following transient transfection of pSYN-FVII-024 with or without pSYN-PC5-003. Lane 1, pSYN-FVII-024, non reducing; lane 2, pSYN-FVII-024, non reducing; lane 3, pSYN-FVII-024, reducing; lane 4, pSYN-FVII-024, reducing.
  • FIG. 27 shows Western blot analysis (Fc western) of FVIIFc species following transient transfection of HEK 293 cells and protein A pulldown.
  • FIG. 28 shows FVII-039 and FVII-040 treatment by FXIa.
  • FIG. 29 shows that an FVIIaFc variant targeted to active form of GPIIbIlla shows an increased rate of thrombin generation.
  • FIG. 30 shows a Rotation Thromoboelastometry (ROTEM) assay to measure the activity of FVII-088 and wild type recombinant FVIIaFc in hemophilia A human blood. Clotting Time, Clot Forming Time and Alpha Angle parameters are shown.
  • FIG. 31 shows exemplary cleavage sites and illustrative positions of such cleavage sites in activatable clotting factor constructs. In this Figure FVII is used as an example.
  • FIG. 32 shows cleavage of the constructs illustrated in FIG. 31.
  • FIG. 33 shows additional activatable constructs and a Western blot illustrating their cleavage.
  • FIG. 34 shows the results of a thrombin generation assay using the FVII-062 and -090 constructs. FVII-062 is a negative control which lacks a thrombin cleavage site, so the construct cannot be activated. FVII-090 contains the ALRPR cleavage site and so is activatable by thrombin.
  • FIG. 35 illustrates the cleavage of high specific activity FVII variants. FVII heavy chain-Fc and light chain Fc collapse in 1 band because the heavy chain loses a glycosylation site after insertion of the trypsin 170 loop and becomes smaller.
  • FIG. 36 illustrates the results of a thrombin generation assay using FVII-090 and
  • FVII-100.
  • FIG. 37 illustrates the results of a thrombin generation assay using FVII-090 and
  • FVII-115.
  • FIG. 38 illustrates amidolytic activity of activatable FVIIFC activated with thrombin.
  • Amidolytic activity of the activatable variants can be measured following thrombin activation and there is increased amidolytic activity for the high specific activity variants as compared to FVII-090. In these assays, after activation of the activatable molecule by thrombin, hirudin is added to inhibit thrombin cleavage of the chromogenic substrate. In this manner, the thrombin does not interfere with the ability to detect FVIIa activity.
  • FIG. 39 illustrates the results of an assay measuring activation of FX by FVIIa using substrate S2765, which is not cleaved by FVIIa. In this assay, 10 uM of FX was incubated with FVIIaFc for 15 minutes at 37° C. The reaction was quenched with EDTA and substrate was added. FIG. 39 shows the results of the control experiment which demonstrates that FX activation by FVIIaFc can be detected.
  • FIG. 40 shows FXa generation activity by “activatable FVIIFc.” The experiment shown in FIG. 40 shows that there is an increase in FX activation activity for the high specific activity variants. In this experiment, FVIIFc (100 nM) was activated with thrombin (100 nM) Hirudin was added to inhibit the thrombin. FX (10 uM) was added, followed by EDTA to inhibit the reaction. The activity of FX was measured by detecting the FXa substrate.
  • FIG. 41 illustrates exemplary activatable construct formats, including an activatable monomer structure used in FVII-118, FVII-119, and FVII-127.
  • FIG. 42 illustrates the efficiency of thrombin cleavage of activatable constructs, specifically monomeric (FVII-118 and -119) as compared to the heterodimeric (FVII-090).
  • FIG. 43 illustrates the results of a thrombin generation assay to compare wild type activatable FVIIFc (FVII-118) to the high specific activity variant (FVII-127).
  • FIG. 44A illustrates several targeted constructs. In this instance, an SCE5 scFv which binds to the active conformation of GPIIbIIIa was included at various sites in the construct.
  • FIG. 44B illustrates the results of thrombin generation assays in platelet-rich FVIII-deficient plasma using these constructs. N7 is the NOVOSEVEN® control. FIG. 44C illustrates the binding of recombinant FVIIaFc variants to platelets by FACs.
  • FIG. 45A illustrates several targeted FVIIa constructs which include AP3, an scFv against GPIIbIIIa present on resting and activated platelets. FIG. 45B shows the results of thrombin generation assays in platelet-rich FVIII-deficient plasma. FIG. 45C shows the results of binding of rFVIIaFc variants to platelets by FACS.
  • FIG. 46A shows several targeted FVIIa constructs that target GPIb-alpha using peptides that bind to that molecule, specifically, the PS4, OS1, and OS2 peptides. FIG. 46B shows the results of thrombin generation assays in platelet-rich FVIII-deficient plasma using the C terminal peptide constructs shown in FIG. 46A.
  • FIG. 47A shows the results of thrombin generation assays in platelet-rich FVIII-deficient plasma using the N terminal peptide constructs shown in FIG. 46A. FIG. 47B shows a direct comparison of FVII-045 and FVII-048.
  • FIG. 48 shows the binding of FVII-045 and FVII-048 and wild type FVIIaFc to platelets as determined by FACS. The figure also shows the affinity of the targeting peptides as reported in Bernard et al. Biochemistry 2008, 47:4674-4682.
  • FIG. 49A shows an exemplary targeted FVIII construct. FIG. 49B shows the results of a thrombin generation assay in FVIII deficient platelet-rich plasma. In this experiment, the assay was activated with tissue factor (top panel) or by platelet activation (bottom panel).
  • FIG. 50 shows results of an experiment measuring half life of a targeted FVII construct comprising a g1a domain (FVII-011) and lacking a g1a domain (FVII-028).
  • FIG. 51A shows several FIX construct comprising targeting moieties, in this case SCE5 scFv. FIG. 51B shows the results of thrombin generation assays in platelet-rich FIX-deficient plasma using the constructs of FIG. 51A. FIG. 51C illustrates that both FIX-068 and FIX-088 have at least 4 times more activity than FIX-042 as measured by Thrombin generation.
  • FIG. 52A shows the results of a thrombin generation assay comparing FIX-090 and BENEFIX®. FIG. 52B shows that the activity of FIX-090 is almost 4 times that of BENEFIX®.
  • FIG. 53A shows a targeted FIX construct comprising a peptide that binds to GPIb, present on resting and activated platelets. FIG. 53B shows the results of thrombin generation assays in platelet-rich FIX deficient plasma. FIG. 53C demonstrates that FIX-089 is roughly 4-times stronger than FIX-042 as measured by thrombin generation, while having a lower specific activity.
  • DETAILED DESCRIPTION OF THE INVENTION
  • The present invention relates to chimeric clotting factors. The present invention is based, at least in part, on the development of novel ways to enhance the efficacy, pharmacokinetic properties, and/or manufacturability of clotting factors. In one embodiment, improved clotting factors of the invention have increased activity where needed, e.g., by targeting the clotting factor to platelets or by being present in a subject in an activatable form (a non-naturally occurring activatable form) that is activated at the site of clot formation. This can be accomplished, e.g., by targeting the clotting factors or by making them in an activatable form.
  • In one embodiment, the subject clotting factors are targeted to the site of coagulation. By incorporating a targeting moiety which targets the clotting factor to resting or activated platelets, the activity of a clotting factor can be enhanced. For example, in the case of factor VII, unlike endogenous FVII that is likely activated by tissue factor (TF) at endothelial cell surfaces to generate activated factor X (FXa), exogenous FVIIa likely generates FXa/FIXa in a TF independent manner, most effective at the surface of activated platelets where other clotting factors are localized. However, physiologically FVIIa acts at the surface of a TF-bearing cell, such as an endothelial cell, and has low affinity for platelets. It has been hypothesized that therapeutic recombinant FVIIa acts by converting Factor X into Factor Xa on the surface of activated platelets. To overcome low platelet affinity and be effective at treating bleeds, recombinant FVIIa is dosed at supra-physiological levels. Therefore, in the case of FVIIa, targeting to platelet surfaces could significantly increase the efficacy of this molecule. Although other clotting factors (e.g. FIX, FVIII, FX) have higher affinity to platelets, these too may exhibit enhanced activity by incorporating platelet targeting moieties. In addition, FVIIa has a relatively short half-life (˜2.3 hours) in humans. This short half-life likely contributes to the need to dose recombinant FVIIa multiple times to control a bleed. Thus, targeting clotting factors, and in particular FVIIa, to platelets improves efficiency.
  • The targeting moiety can be positioned at a number of places in a chimeric doting factor. Exemplary structures of targeted chimeric clotting factors are set forth, e.g., in FIGS. 1-4, 7, 8, 17, 19, 21, 44, 46, 49, 51, and 53.
  • In another embodiment, a chimeric clotting factor of the invention is made in a form that is activatable at the cite of coagulation. For use in bypass therapy exogenous clotting factors are only efficacious when given in the activated form. However, such activated clotting factors are rapidly inactivated by endogenous pathways (e.g. antithrombin III, TFPI), leading to clearance of the active form and a short effective half life. Giving higher doses does not solve this problem as it can result in thrombogenic effects. Thus, in one embodiment, the invention pertains to an “activatable” chimeric clotting factor constructs which comprise a heterologous enzymatic cleavage site not normally present in the clotting factor. These molecules circulate as enhanced zymogens and have a longer half life due to the lack of inactivation upon dosing, but can readily be activated at the site of clotting by cleavage by an enzyme. In one embodiment, such a heterologous enzymatic cleavage site is one for an enzyme produced during the clotting cascade. For example, in one embodiment, the heterologous cleavage site of an activatable construct comprises a Factor XIa, Xa, or thrombin cleavage site. Exemplary FXIa cleavage sites include, e.g.: TQSFNDFTR and SVSQTSKLTR. Exemplary thrombin cleavage sites include, e.g.: DFLAEGGGVR, TTKIKPR, and ALRPR. In one embodiment, a heterologous cleavage site is interposed between the light and heavy chains of the clotting factor. In another embodiment, a heterologous cleavage site is not interposed between the two chains of the clotting factor. In one embodiment, the heterologous cleavage site is amino terminal to the heavy chain of the clotting factor.
  • The heterologous cleavage site is present in a cleavable linker can be positioned at a number of places in a chimeric doting factor. Exemplary structures of activatable chimeric clotting factors are set forth, e.g., in FIGS. 5, 6, 9, 29, 27, 31, and 41. Exemplary such constructs are activated in the presence of clot formation and are described in more detail below.
  • In one embodiment, a chimeric clotting factor of the invention comprises a scaffold, e.g., to enhance the hydrodynamic radius of the molecule. For example, a chimeric clotting factor of the invention may be a fusion protein. Exemplary scaffolds include, e.g., FcRn binding moieties (e.g., complete Fc regions or portions thereof which bind to FcRn), single chain Fc regions (ScFc regions, e.g., as described in US 2008/0260738, WO 2008/012543, or WO 2008/1439545), cleaveable scFc regions (comprising a cscFc regions as described herein), less complicated proteins or portions thereof, e.g., XTen polypeptides®, or albumin.
  • In one embodiment, a chimeric clotting factor of the invention employs an Fc region or an FcRn binding portion thereof as a scaffold moiety. In one embodiment, the Fc moiety to which the chimeric clotting factor is fused is a naturally occurring (or wild type (WT)) Fc moiety. In another embodiment, the Fc moiety comprises one or more variations in sequence.
  • In another embodiment, the Fc moiety is a scFc moiety (e.g., comprising a non-cleavable or a cscFc linker). In a construct comprising a cscFc linker an unprocessed molecule comprises a cleavable single chain Fc region in which the component Fc moieties are genetically-fused in a single polypeptide chain forming a functional, single chain, dimeric Fc region. The cscFc linker can link the Fc moieties that will comprise the dimeric Fc region of the polypeptide in tandem or may link one Fc moiety to a non-Fc moiety of the construct, e.g., a clotting factor or targeting moiety, which is, in turn, linked to a second Fc moiety. The cscFc linker is interposed between the Fc moieties that comprise the scFc region and is flanked by at least one enzymatic cleavage site, e.g., an intracellular enzymatic processing sites. In one embodiment, the scFc linker is flanked by two enzymatic cleavage sites resulting in the excision of the linker (e.g., all or substantially all of the linker) when the protein encoded by the nucleic acid molecule is processed in a cell, In another embodiment, the scFc linker is adjacent to at least one enzymatic cleaveage site that allows for excision of the linker in vitro after the polypeptide has been secreted by a cell or comprises at least one enzymatic cleaveage site that allows for cleavage of the linker in vivo after the construct is administered to a subject. Thus, in one embodiment, although the such a polypeptide comprises scFc region(s) encoded in a single open reading frame (ORF) as part of one contiguous nucleotide sequence in unprocessed form, the cscFc linker is enzymatically cleaved (e.g., prior to administration or in vivo after administration), resulting in a polypeptide which is a heterodimeric molecule comprising an Fc region which is not fused in a single amino acid chain, i.e., the resulting processed construct has a Fc region which comprises two polypeptide chains. In such embodiments, all or substantially all of the linker is excised, while in some embodiments, a portion of the cleavage site may remain, e.g., four arginines of the RRRR cleavage site.
  • In one embodiment, the scFc linker is flanked by two processing sites for cleavage.
  • The two processing sites can be the same or different. In one embodiment, at least one processing site is a cluster of basic amino acid residues as recognized by arginine kex2/furin enzymes. Such enzymes cleave immediately C-terminal to an arginine residue. In another embodiment, at least one cleavage site is one that may be cleaved in vivo, for example a cleavage site recognized by thrombin.
  • In one embodiment, a chimeric clotting factor of the invention is manufactured in an activated form in the context of an scFc molecule comprising a csFc linker. For example, Factor VII, is generally produced recombinantly as a zymogen, and requires activation during manufacturing to produce the active form for administration. In one embodiment, a chimeric clotting factor of the invention is secreted from the cell in which it is expressed in active form to improve manufacturability. As is set forth in more detail below, such clotting factors can be produced by incorporating a single chain Fc region into the molecule. Single chain Fc regions are formed by dimerization of Fc moieties which are present in a single polypeptide chain. In one embodiment, such a construct comprises an scFc polypeptide linker linking the two Fc moieties of the scFc which is adjacent to at least one intracellular processing site. Cleavage of such a construct is delayed until late in the secretory pathway, e.g., when the protein colocalizes with active processing enzymes in the trans-Golgi apparatus.
  • In one embodiment, a cell expressing a construct encoding a polypeptide of the invention endogenously expresses an enzyme which cleaves the scFc linker at one or more processing sites resulting in a dimeric molecule comprising two polypeptide chains. In another embodiment, a cell expressing a construct encoding a polypeptide of the invention exogenously expresses an enzyme which cleaves the scFc linker at one or more processing sites.
  • In one embodiment, a chimeric clotting factor of the invention can combine two or more of these features to create an optimized construct e.g. targeting an activatable fusion protein construct to resting platelets, such that it can be activated efficiently as well as at a higher local concentration at the site of active coagulation. Exemplary such combination constructs include chimeric clotting factors that are both targeted and comprise an scFc linker for enhanced processing. In another embodiment, a construct of the invention is targeted and activatable.
  • Exemplary constructs of the invention are illustrated in the accompanying Figures and sequence listing. In one embodiment, the invention pertains to a polypeptide having the structure as set forth in the Figures. In another embodiment, the invention pertains to a polypeptide having the sequence set forth in the accompanying sequence listing or the the nucleic acid molecule encoding such polypeptides. In one embodiment, the invention pertains to a mature form of a polypeptide having the sequence set forth in the accompanying sequence listing. It will be understood that these constructs and nucleic acid molecules encoding them can be used to improve hemostasis in a subject.
  • In order to provide a clear understanding of the specification and claims, the following definitions are provided below.
  • I. Definitions
  • As used herein, the term “protein” or “polypeptide” refers to a polymer of two or more of the natural amino acids or non-natural amino acids.
  • The term “amino acid” includes alanine (Ala or A); arginine (Arg or R); asparagine (Asn or N); aspartic acid (Asp or D); cysteine (Cys or C); glutamine (Gln or Q); glutamic acid (Glu or E); glycine (Gly or G); histidine (His or H); isoleucine (Ile or I): leucine (Leu or L); lysine (Lys or K); methionine (Met or M); phenylalanine (Phe or F); proline (Pro or P); serine (Ser or S); threonine (Thr or T); tryptophan (Trp or W); tyrosine (Tyr or Y); and valine (Val or V). Non-traditional amino acids are also within the scope of the invention and include norleucine, omithine, norvaline, homoserine, and other amino acid residue analogues such as those described in Ellman et al. Meth. Enzym. 202:301-336 (1991). To generate such non-naturally occurring amino acid residues, the procedures of Noren et al. Science 244:182 (1989) and Ellman et al., supra, can be used. Briefly, these procedures involve chemically activating a suppressor tRNA with a non-naturally occurring amino acid residue followed by in vitro transcription and translation of the RNA. Introduction of the non-traditional amino acid can also be achieved using peptide chemistries known in the art. As used herein, the term “polar amino acid” includes amino acids that have net zero charge, but have non-zero partial charges in different portions of their side chains (e.g. M, F, W, S, Y, N, Q, C). These amino acids can participate in hydrophobic interactions and electrostatic interactions. As used herein, the term “charged amino acid” include amino acids that can have non-zero net charge on their side chains (e.g. R, K, H, E, D). These amino acids can participate in hydrophobic interactions and electrostatic interactions.
  • An “amino acid substitution” refers to the replacement of at least one existing amino acid residue in a predetermined amino acid sequence (an amino acid sequence of a starting polypeptide) with a second, different “replacement” amino acid residue. An “amino acid insertion” refers to the incorporation of at least one additional amino acid into a predetermined amino acid sequence. While the insertion will usually consist of the insertion of one or two amino acid residues, the present larger “peptide insertions”, can be made, e.g. insertion of about three to about five or even up to about ten, fifteen, or twenty amino acid residues. The inserted residue(s) may be naturally occurring or non-naturally occurring as disclosed above. An “amino acid deletion” refers to the removal of at least one amino acid residue from a predetermined amino acid sequence.
  • Polypeptides may be either monomers or multimers. For example, in one embodiment, a protein of the invention is a dimer. A dimeric polypeptide of the invention may comprise two polypeptide chains or may consist of one polypeptide chain (e.g., in the case of an scFc molecule). In one embodiment, the dimers of the invention are homodimers, comprising two identical monomeric subunits or polypeptides (e.g., two identical Fc moieties or two identical biologically active moieties). In another embodiment, the dimers of the invention are heterodimers, comprising two non-identical monomeric subunits or polypeptides (e.g., comprising two different clotting factors or portions thereof or one clotting factor only). See, e.g., U.S. Pat. No. 7,404,956, incorporated herein by reference.
  • As used herein, the term “polypeptide linkers” refers to a peptide or polypeptide sequence (e.g., a synthetic peptide or polypeptide sequence) which connects two domains in a linear amino acid sequence of a polypeptide chain. In one embodiment, the polypeptides of invention are encoded by nucleic acid molecules that encode polypeptide linkers which either directly or indirectly connect the two Fc moieties which make up the construct. These linkers are referred to herein as “scFc linkers” and the scFc linker is interposed between the two Fc moieties of a polypeptide which comprises it. If the scFc linker connects two Fc moieties contiguously in the linear polypeptide sequence, it is a “direct” linkage. In contract, the scFc linkers may link the first Fc moiety to a binding moiety which is, in turn, linked to the second Fc moiety, thereby forming an indirect linkage. These scFc linkers permit the formation of a single chain genetic construct. In one embodiment, the polypeptides also comprise enzymatic cleavage sites which result in the scFc linker being cleavable (a cscFc linker) and, in one embodiment, substantially excised (e.g., during processing by a cell). Thus, the resulting processed polypeptide is a dimeric molecule comprising at least two amino acid chains and substantially lacking extraneous linker amino acid sequences. In some embodiments, all or substantially all of the linker is excised, while in some embodiments, a portion of the cleavage site may remain, e.g., four arginines of the RRRR cleavage site.
  • In another embodiment, another type of polypeptide linker, herein referred to as a “spacer” may be used to connect different moieties, e.g., a clotting factor or targeting moiety to an Fc moiety on the polypeptide. This type of linker may provide flexibility to the polypeptide molecule. Spacers are not typically cleaved; however in certain embodiments, such cleavage may be desirable. Exemplary positions of spacers are shown in the accompanying drawings. Spacers can be located between the clotting factors, targeting moieties, and/or scaffolds, e.g., at the N or C terminus of these moieties. In one embodiment, these linkers are not removed during processing.
  • A third type of linker which may be present in a chimeric clotting factor of the invention is herein referred to as a “cleavable linker” which comprises a heterologous cleavage site (e.g., a factor XIa, Xa, or thrombin cleavage site) and which may include additional spacer linkers on either the N terminal of C terminal or both sides of the cleavage site. Exemplary locations for such sites are shown in the accompanying drawings and include, e.g., placement adjacent to targeting moieties. In another embodiment, such linkers may be adjacent to a clotting factor or portion thereof. For example, in one embodiment, a cleavable linker may be fused to the N terminus of the heavy chain of a clotting factor to make an activatable form of the clotting factor. In such cases, the cleavable linker may include additional spacer linkers at the N terminus of the cleavage site, but requires direct fusion at the C-terminus of the cleavage site to the amino terminus of the heavy chain of the clotting factor.
  • As used herein, the term “gly-ser polypeptide linker” refers to a peptide that consists of glycine and serine residues. An exemplary gly/ser polypeptide linker comprises the amino acid sequence (Gly4 Ser)n. (SEQ ID NO:4) Another exemplary gly/ser polypeptide linker comprises the amino acid sequence S(Gly4 Ser)n.
  • In one embodiment, n=1. In one embodiment, n=2. In another embodiment, n=3, i.e., (Gly4 Ser)3. In another embodiment, n=4, i.e., (Gly4 Ser)4 (SEQ ID NO:6). In another embodiment, n=5. In yet another embodiment, n=6. In another embodiment, n=7. In yet another embodiment, n=8. In another embodiment, n=9. In yet another embodiment, n=10. Another exemplary gly/ser polypeptide linker comprises the amino acid sequence Ser(Gly4Ser)n (SEQ ID NO:26). In one embodiment, n=1. In one embodiment, n=2. In a preferred embodiment, n=3. In another embodiment, n=4. In another embodiment, n=5. In yet another embodiment, n=6.
  • A polypeptide or amino acid sequence “derived from” a designated polypeptide or protein refers to the origin of the polypeptide. Preferably, the polypeptide or amino acid sequence which is derived from a particular sequence has an amino acid sequence that is essentially identical to that sequence or a portion thereof, wherein the portion consists of at least 10-20 amino acids, preferably at least 20-30 amino acids, more preferably at least 30-50 amino acids, or which is otherwise identifiable to one of ordinary skill in the art as having its origin in the sequence.
  • Polypeptides derived from another peptide may have one or more mutations relative to the starting polypeptide, e.g., one or more amino acid residues which have been substituted with another amino acid residue or which has one or more amino acid residue insertions or deletions. Preferably, the polypeptide comprises an amino acid sequence which is not naturally occurring. Such variants necessarily have less than 100% sequence identity or similarity with the starting antibody. In a preferred embodiment, the variant will have an amino acid sequence from about 75% to less than 100% amino acid sequence identity or similarity with the amino acid sequence of the starting polypeptide, more preferably from about 80% to less than 100%, more preferably from about 85% to less than 100%, more preferably from about 90% to less than 100% (e.g., 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%) and most preferably from about 95% to less than 100%, e.g., over the length of the variant molecule. In one embodiment, there is one amino acid difference between a starting polypeptide sequence and the sequence derived therefrom. Identity or similarity with respect to this sequence is defined herein as the percentage of amino acid residues in the candidate sequence that are identical (i.e. same residue) with the starting amino acid residues, after aligning the sequences and introducing gaps, if necessary, to achieve the maximum percent sequence identity.
  • Preferred polypeptides of the invention comprise an amino acid sequence (e.g., at least one clotting factor or Fc moiety or domain) derived from a human protein sequence. However, polypeptides may comprise one or more amino acids from another mammalian species. For example, a clotting factor, Fc domain, or targeting moiety may be derived from a non-human species and included in the subject polypeptides. Alternatively, one or more amino acids may be present in a polypeptide which are derived from a non-human species. Preferred polypeptides of the invention are not immunogenic.
  • It will also be understood by one of ordinary skill in the art that the polypeptides of the invention may be altered such that they vary in amino acid sequence from the naturally occurring or native polypeptides from which they were derived, while retaining the desirable activity of the native polypeptides. For example, nucleotide or amino acid substitutions leading to conservative substitutions or changes at “non-essential” amino acid residues may be made. An isolated nucleic acid molecule encoding a non-natural variant of a polypeptide derived from an immunoglobulin (e.g., an Fc domain, moiety, or antigen binding site) can be created by introducing one or more nucleotide substitutions, additions or deletions into the nucleotide sequence of the immunoglobulin such that one or more amino acid substitutions, additions or deletions are introduced into the encoded protein. Mutations may be introduced by standard techniques, such as site-directed mutagenesis and PCR-mediated mutagenesis.
  • The polypeptides of the invention may comprise conservative amino acid substitutions at one or more amino acid residues, e.g., at essential or non-essential amino acid residues. A “conservative amino acid substitution” is one in which the amino acid residue is replaced with an amino acid residue having a similar side chain. Families of amino acid residues having similar side chains have been defined in the art, including basic side chains (e.g., lysine, arginine, histidine), acidic side chains (e.g., aspartic acid, glutamic acid), uncharged polar side chains (e.g., glycine, asparagine, glutamine, serine, threonine, tyrosine, cysteine), nonpolar side chains (e.g., alanine, valine, leucine, isoleucine, proline, phenylalanine, methionine, tryptophan), beta-branched side chains (e.g., threonine, valine, isoleucine) and aromatic side chains (e.g., tyrosine, phenylalanine, tryptophan, histidine). Thus, a nonessential amino acid residue in a polypeptide may be replaced with another amino acid residue from the same side chain family. In another embodiment, a string of amino acids can be replaced with a structurally similar string that differs in order and/or composition of side chain family members. Alternatively, in another embodiment, mutations may be introduced randomly along all or part of a coding sequence, such as by saturation mutagenesis, and the resultant mutants can be incorporated into polypeptides of the invention and screened for their ability to bind to the desired target.
  • In the context of polypeptides, a “linear sequence” or a “sequence” is the order of amino acids in a polypeptide in an amino to carboxyl terminal direction in which residues that neighbor each other in the sequence are contiguous in the primary structure of the polypeptide.
  • As used herein, the terms “linked,” “fused”, or “fusion” refer to linkage via a peptide bonds (e.g., genetic fusion), chemical conjugation or other means. For example, one way in which molecules or moieties can be linked employs polypeptide linkers which link the molecules or moieties via peptide bonds. The terms “genetically fused,” “genetically linked” or “genetic fusion” are used interchangeably and refer to the co-linear, covalent linkage or attachment of two or more proteins, polypeptides, or fragments thereof via their individual peptide backbones, through genetic expression of a single polynucleotide molecule encoding those proteins, polypeptides, or fragments. Such genetic fusion results in the expression of a single contiguous genetic sequence. Preferred genetic fusions are in frame, i.e., two or more open reading frames (ORFs) are fused to form a continuous longer ORF, in a manner that maintains the correct reading frame of the original ORFs. Thus, the resulting recombinant fusion protein is a single polypeptide containing two or more protein segments that correspond to polypeptides encoded by the original ORFs (which segments are not normally so joined in nature). In this case, the single polypeptide is cleaved during processing to yield dimeric molecules comprising two polypeptide chains.
  • As used herein, the term “Fc region” is defined as the portion of a polypeptide which corresponds to the Fc region of native immunoglobulin, i.e., as formed by the dimeric association of the respective Fc domains of its two heavy chains. A native Fc region is homodimeric and comprises two polypeptide chains. In contrast, the term “genetically-fused Fc region” or “single-chain Fc region” (scFc region), as used herein, refers to a synthetic dimeric Fc region comprised of Fc domains genetically linked within a single polypeptide chain (i.e., encoded in a single contiguous genetic sequence).
  • As used herein, the term “Fc domain” refers to the portion of a single immunoglobulin heavy chain beginning in the hinge region just upstream of the papain cleavage site (i.e. residue 216 in IgG, taking the first residue of heavy chain constant region to be 114) and ending at the C-terminus of the antibody. Accordingly, a complete Fc domain comprises at least a hinge domain, a CH2 domain, and a CH3 domain.
  • As used herein, the term “Fc domain portion” or “Fc moiety” includes an amino acid sequence of an Fc domain or derived from an Fc domain. In certain embodiments, an Fc moiety comprises at least one of: a hinge (e.g., upper, middle, and/or lower hinge region) domain, a CH2 domain, a CH3 domain, a CH4 domain, or a variant, portion, or fragment thereof. In other embodiments, an Fc moiety comprises a complete Fc domain (i.e., a hinge domain, a CH2 domain, and a CH3 domain). In one embodiment, a Fc moiety comprises a hinge domain (or portion thereof) fused to a CH3 domain (or portion thereof). In another embodiment, an Fc moiety comprises a CH2 domain (or portion thereof) fused to a CH3 domain (or portion thereof). In another embodiment, an Fc moiety consists of a CH3 domain or portion thereof. In another embodiment, an Fc moiety consists of a hinge domain (or portion thereof) and a CH3 domain (or portion thereof). In another embodiment, a Fc moiety consists of a CH2 domain (or portion thereof) and a CH3 domain. In another embodiment, a Fc moiety consists of a hinge domain (or portion thereof) and a CH2 domain (or portion thereof). In one embodiment, an Fc moiety lacks at least a portion of a CH2 domain (e.g., all or part of a CH2 domain).
  • As used herein, the term “half-life” refers to a biological half-life of a particular polypeptide in vivo. Half-life may be represented by the time required for half the quantity administered to a subject to be cleared from the circulation and/or other tissues in the animal. When a clearance curve of a given polypeptide is constructed as a function of time, the curve is usually biphasic with a rapid α-phase and longer β-phase. The α-phase typically represents an equilibration of the administered Fc polypeptide between the intra- and extra-vascular space and is, in part, determined by the size of the polypeptide. The β-phase typically represents the catabolism of the polypeptide in the intravascular space. Therefore, in a preferred embodiment, the term half-life as used herein refers to the half-life of the polypeptide in the β-phase. The typical β phase half-life of a human antibody in humans is 21 days.
  • As used herein the term “moiety” refers to a component part or constituent of a chimeric polypeptide.
  • As used herein, the term “targeting moiety” refers to a molecule, fragment thereof or a component of a polypeptide which localizes or directs the polypeptides of the invention to a desired site or cell. In one embodiment, a construct of the invention comprises a “targeting moiety” which enhances the activity of the polypeptide, e.g., by localizing the molecule to a desired site. Such a moiety may be, e.g., an antibody or variant thereof (e.g., and scFv) or a peptide. In another embodiment, such a targeting moiety may be a polypeptide, a receptor binding portion of a ligand, or a ligand binding portion of a receptor which is linked to a polypeptide of the invention and binds to the desired target, e.g., on a cell or tissue. The targeting moiety may be genetically fused to a construct, chemically conjugated to the construct or linked to the construct via a spacer. For example, targeting moieties may be attached to a construct of the invention by formation of a bond between the targeting moiety and an Fc moiety of a construct, where the targeting moiety comprises a first functional group and the Fc moiety comprises a second functional group, and where the first and second functional groups are capable of reacting with each other to form a chemical bond (see, e.g., U.S. Pat. No. 7,381,408). In one embodiment, a targeting moiety binds to platelets. Exemplary targeting moieties are described in more detail below.
  • In one embodiment a targeting moiety for use in a construct of the invention comprises an antibody variant. The term “antibody variant” or “modified antibody” includes an antibody which does not occur in nature and which has an amino acid sequence or amino acid side chain chemistry which differs from that of a naturally-derived antibody by at least one amino acid or amino acid modification as described herein. As used herein, the term “antibody variant” includes synthetic forms of antibodies which are altered such that they are not naturally occurring, e.g., antibodies that comprise at least two heavy chain portions but not two complete heavy chains (such as, domain deleted antibodies or minibodies); multispecific forms of antibodies (e.g., bispecific, trispecific, etc.) altered to bind to two or more different antigens or to different epitopes on a single antigen); heavy chain molecules joined to scFv molecules; single-chain antibodies; diabodies; triabodies; and antibodies with altered effector function and the like.
  • As used herein the term “scFv molecule” includes binding molecules which consist of one light chain variable domain (VL) or portion thereof, and one heavy chain variable domain (VH) or portion thereof, wherein each variable domain (or portion thereof) is derived from the same or different antibodies. scFv molecules preferably comprise an scFv linker interposed between the VH domain and the VL domain. ScFv molecules are known in the art and are described, e.g., in U.S. Pat. No. 5,892,019, Ho et al. 1989. Gene 77:51; Bird et al. 1988 Science 242:423; Pantoliano et al. 1991. Biochemistry 30:10117; Milenic et al. 1991. Cancer Research 51:6363; Takkinen et al. 1991. Protein Engineering 4:837.
  • A “scFv linker” as used herein refers to a moiety interposed between the VL and VH domains of the scFv. scFv linkers preferably maintain the scFv molecule in a antigen binding conformation. In one embodiment, a scFv linker comprises or consists of an scFv linker peptide. In certain embodiments, a scFv linker peptide comprises or consists of a glyser polypeptide linker. In other embodiments, a scFv linker comprises a disulfide bond.
  • The term “glycosylation” refers to the covalent linking of one or more carbohydrates to a polypeptide. Typically, glycosylation is a posttranslational event which can occur within the intracellular milieu of a cell or extract therefrom. The term glycosylation includes, for example, N-linked glycosylation (where one or more sugars are linked to an asparagine residue) and/or O-linked glycosylation (where one or more sugars are linked to an amino acid residue having a hydroxyl group (e.g., serine or threonine). In one embodiment, a molecule of the invention is glycosylated. In another embodiment, a molecule of the invention is glycosylated. In yet another embodiment, a molecule of the invention has reduced glycosylation as compared to that in a wild type Fc region.
  • As used herein the term “disulfide bond” includes the covalent bond formed between two sulfur atoms. The amino acid cysteine comprises a thiol group that can form a disulfide bond or bridge with a second thiol group. In most naturally occurring IgG molecules, the CH1 and CL regions are linked by native disulfide bonds and the two heavy chains are linked by two native disulfide bonds at positions corresponding to 239 and 242 using the Kabat numbering system (position 226 or 229, EU numbering system).
  • The term “vector” or “expression vector” is used herein to mean vectors used in accordance with the present invention as a vehicle for introducing into and expressing a desired polynucleotide in a cell. As known to those skilled in the art, such vectors may easily be selected from the group consisting of plasmids, phages, viruses and retroviruses. In general, vectors compatible with the instant invention will comprise a selection marker, appropriate restriction sites to facilitate cloning of the desired gene and the ability to enter and/or replicate in eukaryotic or prokaryotic cells.
  • Numerous expression vector systems may be employed to produce the chimeric clotting factors of the invention. For example, one class of vector utilizes DNA elements which are derived from animal viruses such as bovine papilloma virus, polyoma virus, adenovirus, vaccinia virus, baculovirus, retroviruses (RSV, MMTV or MOMLV) or SV40 virus. Additionally, cells which have integrated the DNA into their chromosomes may be selected by introducing one or more markers which allow selection of transfected host cells. The marker may provide for prototrophy to an auxotrophic host, biocide resistance (e.g., antibiotics) or resistance to heavy metals such as copper. The selectable marker gene can either be directly linked to the DNA sequences to be expressed, or introduced into the same cell by cotransformation. In one embodiment, an inducible expression system can be employed. Additional elements may also be needed for optimal synthesis of mRNA. These elements may include signal sequences, splice signals, as well as transcriptional promoters, enhancers, and termination signals. In one embodiment, a secretion signal, e.g., any one of several well characterized bacterial leader peptides (e.g., pelB, phoA, or ompA), can be fused in-frame to the N terminus of a polypeptide of the invention to obtain optimal secretion of the polypeptide. (Lei et al. (1988), Nature, 331:543; Better et al. (1988) Science, 240:1041; Mullinax et al., (1990). PNAS, 87:8095).
  • The term “host cell” refers to a cell that has been transformed with a vector constructed using recombinant DNA techniques and encoding at least one heterologous gene. In descriptions of processes for isolation of proteins from recombinant hosts, the terms “cell” and “cell culture” are used interchangeably to denote the source of protein unless it is clearly specified otherwise. In other words, recovery of protein from the “cells” may mean either from spun down whole cells, or from the cell culture containing both the medium and the suspended cells. The host cell line used for protein expression is most preferably of mammalian origin; those skilled in the art are credited with ability to preferentially determine particular host cell lines which are best suited for the desired gene product to be expressed therein. Exemplary host cell lines include, but are not limited to, DG44 and DUXB11 (Chinese Hamster Ovary lines, DHFR minus), HELA (human cervical carcinoma), CVI (monkey kidney line), COS (a derivative of CVI with SV40 T antigen), R1610 (Chinese hamster fibroblast) BALBC/3T3 (mouse fibroblast), PerC6 cells), HAK (hamster kidney line), SP2/0 (mouse myeloma), P3x63-Ag3.653 (mouse myeloma), BFA-1c1BPT (bovine endothelial cells), RAJI (human lymphocyte) and 293 (human kidney). Host cell lines are typically available from commercial services, the American Tissue Culture Collection or from published literature. The polypeptides of the invention can also be expressed in non-mammalian cells such as bacteria or yeast or plant cells. In this regard it will be appreciated that various unicellular non-mammalian microorganisms such as bacteria can also be transformed; i.e. those capable of being grown in cultures or fermentation. Bacteria, which are susceptible to transformation, include members of the enterobacteriaceae, such as strains of Escherichia coli or Salmonella; Bacillaceae, such as Bacillus subtilis; Pneumococcus; Streptococcus, and Haemophilus influenzae. It will further be appreciated that, when expressed in bacteria, the polypeptides typically become part of inclusion bodies. The polypeptides must be isolated, purified and then assembled into functional molecules.
  • In addition to prokaryotes, eukaryotic microbes may also be used. Saccharomyces cerevisiae, or common baker's yeast, is the most commonly used among eukaryotic microorganisms although a number of other strains are commonly available including Pichia pastoris. For expression in Saccharomyces, the plasmid YRp7, for example, (Stinchcomb et al., (1979), Nature, 282:39; Kingsman et al., (1979), Gene, 7:141; Tschemper et al., (1980), Gene, 10:157) is commonly used. This plasmid already contains the TRP1 gene which provides a selection marker for a mutant strain of yeast lacking the ability to grow in tryptophan, for example ATCC No. 44076 or PEP4-1 (Jones, (1977), Genetics, 85:12). The presence of the trpl lesion as a characteristic of the yeast host cell genome then provides an effective environment for detecting transformation by growth in the absence of tryptophan.
  • As used herein the term “endogenous” refers to molecules (e.g. nucleic acid and/or protein molecules) that are naturally present in a cell. In contrast, the term “exogenous” or “heterologous” refers to such molecules that are not normally found in a given context, e.g., in a cell or in a polypeptide. For example, an exogenous or heterologous molecule may be introduced into a cell and are only present after manipulation of the cell, e.g., by transfection or other forms of genetic engineering or a heterologous amino acid sequence may be present in a protein in which it is not naturally found.
  • As used herein, the term “cleavage site” or “enzymatic cleavage site” refers to a site recognized by an enzyme. Certain enzymatic cleavage sites comprise an intracellular processing site. In one embodiment, a polypeptide has an enzymatic cleavage site cleaved by an enzyme that is activated during the clotting cascade, such that cleavage of such sites occurs at the site of clot formation. Exemplary such sites include e.g., those recognized by thrombin, Factor XIa or Factor Xa. Exemplary FXIa cleavage sites include, e.g, TQSFNDFTR and SVSQTSKLTR. Exemplary thrombin cleavage sites include, e.g, DFLAEGGGVR, TTKIKPR, LVPRG SEQ ID NO:35) and ALRPR. Other enzymatic cleavage sites are known in the art.
  • As used herein, the term “processing site” or “intracellular processing site” refers to a type of enzymatic cleavage site in a polypeptide which is the target for enzymes that function after translation of the polypeptide. In one embodiment, such enzymes function during transport from the Golgi lumen to the trans-Golgi compartment. Intracellular processing enzymes cleave polypeptides prior to secretion of the protein from the cell. Examples of such processing sites include, e.g., those targeted by the PACE/furin (where PACE is an acronym for Paired basic Amino acid Cleaving Enzyme) family of endopeptidases. These enzymes are localized to the Golgi membrane and cleave proteins on the carboxyterminal side of the sequence motif Arg-[any residue]-(Lys or Arg)-Arg. As used herein the “furin” family of enzymes includes, e.g., furin, PC2, PC1/Pc3, PC4, PACE4, PC5/PC6, and LPC/PC7/PC8/SPC7. Other processing sites are known in the art.
  • In constructs that include more than one processing or cleavage site, it will be understood that such sites may be the same or different.
  • In vitro production allows scale-up to give large amounts of the desired altered polypeptides of the invention. Techniques for mammalian cell cultivation under tissue culture conditions are known in the art and include homogeneous suspension culture, e.g. in an airlift reactor or in a continuous stirrer reactor, or immobilized or entrapped cell culture, e.g. in hollow fibers, microcapsules, on agarose microbeads or ceramic cartridges. If necessary and/or desired, the solutions of polypeptides can be purified by the customary chromatography methods, for example gel filtration, ion-exchange chromatography, hydrophobic interaction chromatography (HIC, chromatography over DEAE-cellulose or affinity chromatography.
  • As used herein, the phrase “subject that would benefit from administration of a polypeptide” includes subjects, such as mammalian subjects, that would benefit from administration of polypeptides of the invention, e.g., to improve hemostasis.
  • A “chimeric protein” or “fusion protein”, as used herein, refers to any protein comprised of a first amino acid sequence derived from a first source, bonded, covalently or non-covalently, to a second amino acid sequence derived from a second source, wherein the first and second source are not the same. A first source and a second source that are not the same can include two different biological entities, or two different proteins from the same biological entity, or a biological entity and a non-biological entity. A chimeric protein can include for example, a protein derived from at least 2 different biological sources. A biological source can include any non-synthetically produced nucleic acid or amino acid sequence (e.g. a genomic or cDNA sequence, a plasmid or viral vector, a native virion or a mutant or analog, as further described herein, of any of the above). A synthetic source can include a protein or nucleic acid sequence produced chemically and not by a biological system (e.g. solid phase synthesis of amino acid sequences). A chimeric protein can also include a protein derived from at least 2 different synthetic sources or a protein derived from at least one biological source and at least one synthetic source. A chimeric protein may also comprise a first amino acid sequence derived from a first source, covalently or non-covalently linked to a nucleic acid, derived from any source or a small organic or inorganic molecule derived from any source. The chimeric protein may comprise a linker molecule between the first and second amino acid sequence or between the first amino acid sequence and the nucleic acid, or between the first amino acid sequence and the small organic or inorganic molecule.
  • As used herein, the term “clotting factor,” refers to molecules, or analogs thereof, naturally occurring or recombinantly produced which prevent or decrease the duration of a bleeding episode in a subject. In other words, it means molecules having pro-clotting activity, i.e., are responsible for the conversion of fibrinogen into a mesh of insoluble fibrin causing the blood to coagulate or clot.
  • Clotting activity, as used herein, means the ability to participate in a cascade of biochemical reactions that culminates in the formation of a fibrin clot and/or reduces the severity, duration or frequency of hemorrhage or bleeding episode.
  • Hemostasis, as used herein, means the stopping or slowing of bleeding or hemorrhage; or the stopping or slowing of blood flow through a blood vessel or body part.
  • Hemostatic disorder, as used herein, means a genetically inherited or acquired condition characterized by a tendency to hemorrhage, either spontaneously or as a result of trauma, due to an impaired ability or inability to form a fibrin clot. Examples of such disorders include the hemophilias. The three main forms are hemophilia A (factor VIII deficiency), hemophilia B (factor IX deficiency or “Christmas disease”) and hemophilia C (factor XI deficiency, mild bleeding tendency), Von Willebrand disease, factor Xi deficiency (PTA deficiency), Factor XII deficiency, deficiencies or structural abnormalities in fibrinogen, prothrombin, Factor V, Factor VII, Factor X or factor XIII, Bernard-Soulier syndrome is a defect or deficiency in GPIb. GPIb, the receptor for vWF, can be defective and lead to lack of primary clot formation (primary hemostasis) and increased bleeding tendency), and thrombasthenia of Glanzman and Naegeli (Glanzmann thrombasthenia). In liver failure (acute and chronic forms), there is insufficient production of coagulation factors by the liver; this may increase bleeding risk.
  • The chimeric molecules of the invention can be used prophylacticly. As used herein the term “prophylactic treatment” refers to the administration of a molecule prior to a bleeding episode. In one embodiment, the subject in need of a general hemostatic agent is undergoing, or is about to undergo, surgery. The chimeric protein of the invention can be administered prior to or after surgery as a prophylactic. The chimeric protein of the invention can be administered during or after surgery to control an acute bleeding episode. The surgery can include, but is not limited to, liver transplantation, liver resection, or stem cell transplantation
  • On-demand treatment includes treatment for a bleeding episode, hemarthrosis, muscle bleed, oral bleed, hemorrhage, hemorrhage into muscles, oral hemorrhage, trauma, trauma capitis (head trauma), gastrointestinal bleeding, intracranial hemorrhage, intra-abdominal hemorrhage, intrathoracic hemorrhage, bone fracture, central nervous system bleeding, bleeding in the retropharyngeal space, bleeding in the retroperitoneal space, or bleeding in the illiopsoas sheath. The subject may be in need of surgical prophylaxis, peri-operative management, or treatment for surgery. Such surgeries include, e.g., minor surgery, major surgery, tooth extraction, tonsillectomy, inguinal herniotomy, synovectomy, total knee replacement, craniotomy, osteosynthesis, trauma surgery, intracranial surgery, intra-abdominal surgery, intrathoracic surgery, or joint replacement surgery.
  • As used herein the term “acute bleeding” refers to a bleeding episode regardless of the underlying cause. For example, a subject may have trauma, uremia, a hereditary bleeding disorder (e.g., factor VII deficiency) a platelet disorder, or resistance owing to the development of antibodies to clotting factors.
  • Treat, treatment, treating, as used herein refers to, e.g., the reduction in severity of a disease or condition; the reduction in the duration of a disease course; the amelioration of one or more symptoms associated with a disease or condition; the provision of beneficial effects to a subject with a disease or condition, without necessarily curing the disease or condition, the prophylaxis of one or more symptoms associated with a disease or condition.
  • II. Clotting Factors
  • In particular, the invention pertains to improved versions of factors VII, IX, and X. These factors are all structurally related in that in each the amino terminal end of the light chain is not amenable to the incorporation of additional moieties. Similarly, the amino terminal end of the heavy chain of these three clotting factors is not amenable to the incorporation of additional moieties, with the exception of cleaveable moieties, i.e., moieties linked via a cleavage site or moieties which consist of a cleaveage site. The chimeric clotting factor constructs of the invention were designed based on these shared properties and it will be understood that although factor VII is often shown to illustrate exemplary embodiments of the invention, the subject constructs may be made using factor VII, IX, or X. For example, one of skill in the art would understand that the FVII portion of a construct of the invention could be substituted with a FVIII, FIX or FX portion to make an enhanced version of one of these clotting factors.
  • Exemplary chimeric clotting factor constructs of the invention are set forth in the accompanying Figures. Although the Figures generally illustrate the clotting Factor as a single chain (in its zymogen form) it will be understood that the clotting factor may also be present in its active form in a construct of the invention, e.g. as a two chain, disulfide bonded form.
  • In one embodiment, a chimeric clotting factor of the invention is expressed by a cell in active form. In another embodiment, a chimeric clotting factor is expressed in inactive form and is subsequently activated under appropriate conditions in vitro such that the active form of the clotting factor is present in the construct. In another embodiment, a chimeric clotting factor of the invention comprises a clotting factor in inactive form and the clotting factor is activated in vivo after administration.
  • In one embodiment, an scFc scaffold can be used to produce an active form of a molecule. Certain clotting factors are produced recombinantly as zymogens and, therefore, require activation during manufacturing. Active forms of Factors VII, IX, and X are comprised of dimeric molecules in which the heavy and light chain are linked only by a disulfide bond.
  • In one embodiment, a chimeric clotting factor is activated prior to administration to a subject to improve hemostasis. Methods for activating clotting factors are known in the art. For example, in one embodiment, a chimeric clotting factor of the invention is contacted with media containing CaCl2 at a concentration of approximately 5 mM.
  • In another embodiment, a chimeric clotting factor of the invention is secreted in active form by a cell in which it is expressed. In one embodiment, an active chimeric clotting factor is made by expressing the heavy and light chain of a clotting factor as separate polypeptides.
  • In another embodiment, the N-terminus of the heavy chain of the clotting factor is modified to comprise an intracellular processing site which delays the activation of the clotting factor during synthesis until later in the secretory pathway, (i.e. until protein colocalizes with active processing enzymes in the trans-Golgi network), leading to greater productivity. Exemplary such intracellular processing sites include those recognized by furin. Exemplary cleavage sites for this family of enzymes include an amino acid sequence comprising the motif Arg-Xaa-Lys/Arg-Arg.
  • In a preferred embodiment, an active construct of the invention is made in the context of an Fc fusion protein, e.g., using an scFc linker (e.g., a cscfc linker).
  • Exemplary constructs are shown in the accompanying figures.
  • In one embodiment, the invention pertains to processed (e.g., mature) polypeptides in which the at least one cleavage site adjacent to an scFc polypeptide linker has been cleaved such that the molecule is no longer a single polypeptide chain such that the polypeptide is comprised of at least two polypeptide chains (owing to cleavage at the enzymatic cleavage site(s) P1 and/or P2).
  • In one embodiment, such processed polypeptides comprise a clotting factor or portion thereof linked to the second Fc moiety (i.e., the second Fc moiety when counting from the amino terminus to the carboxy terminus prior to cleavage of the polypeptide linker) which has a free amino terminus after cleavage of the polypeptide linker.
  • In one embodiment, a clotting factor attached to the N-terminus of the second Fc moiety is catalytically active, e.g., has enzymatic activity. In another embodiment, a clotting factor attached to the N-terminus of the second Fc moiety is secreted by a cell as a zymogen requiring further enzymatic processing of the clotting factor in order to be fully activated.
  • In one embodiment, the invention pertains to clotting factors which are secreted from cells in active or activated form without the need for further activation during processing. For example, Factor VII is generally produced recombinantly as a zymogen and requires activation during manufacturing to produce the active form for administration. In one embodiment, a polypeptide of the invention is secreted from the cell in which it is expressed in active form to improve manufacturability. As is set forth in more detail below, such clotting factors can be produced by expressing the light chain of a clotting factor and the heavy chain of a clotting factor separately in the context of an scFc molecule comprising a cscFc linker. Activation of such a construct is delayed until late in the secretory pathway during processing, e.g., when the protein colocalizes with active processing enzymes in the trans-Golgi apparatus.
  • In one embodiment, a clotting factor of the invention is a mature form of Factor VII or a variant thereof. Factor VII (FVII, F7; also referred to as Factor 7, coagulation factor VII, serum factor VII, serum prothrombin conversion accelerator, SPCA, proconvertin and eptacog alpha) is a serine protease that is part of the coagulation cascade. FVII includes a Gla domain, two EGF domains (EGF-1 and EGF-2), and a serine protease domain (or peptidase S1 domain) that is highly conserved among all members of the peptidase S1 family of serine proteases, such as for example with chymotrypsin. FVII occurs as a single chain zymogen, an activated zymogen-like two-chain polypeptide and a fully activated two-chain form. As used herein, a “zymogen-like” protein or polypeptide refers to a protein that has been activated by proteolytic cleavage, but still exhibits properties that are associated with a zymogen, such as, for example, low or no activity, or a conformation that resembles the conformation of the zymogen form of the protein. For example, when it is not bound to tissue factor, the two-chain activated form of FVII is a zymogen-like protein; it retains a conformation similar to the uncleaved FVII zymogen, and, thus, exhibits very low activity. Upon binding to tissue factor, the two-chain activated form of FVII undergoes conformational change and acquires its full activity as a coagulation factor.
  • Exemplary FVII variants include those with increased specific activity, e.g., mutations that increase the activity of FVII by increasing its enzymatic activity (Kcat or Km). Such variants have been described in the art and include, e.g., mutant forms of the molecule as described for example in Persson et al. 2001. PNAS 98:13583; Petrovan and Ruf. 2001. J. Biol. Chem. 276:6616; Persson et al. 2001 J. Biol. Chem. 276:29195; Soejima et al. 2001. J. Biol. Chem. 276:17229; Soejima et al. 2002. J. Biol. Chem. 247:49027. In one embodiment, a variant form of FVII includes the mutations Exemplary mutations include V158D-E296V-M298Q. In another embodiment, a variant form of FVII includes a replacement of amino acids 608-619 (LQQSRKVGDSPN, corresponding to the 170-loop) from the FVII mature sequence with amino acids EASYPGK from the 170-loop of trypsin. High specific activity variants of FIX are also known in the art. Fir example, Simioni et al. (2009 N. E. Journal of Medicine 361:1671) describe an R338L mutation. Chang et al. (1988 JBC 273:12089) and Pierri et al. (2009 Human Gene Therapy 20:479) describe an R338A mutation. Other mutations are known in the art and include those described, e.g., in Zogg and Brandstetter. 2009 Structure 17:1669; Sichler et al. 2003. J. Biol. Chem. 278:4121; and Sturzebecher et al. 1997. FEBS Lett 412:295. The contents of these references are incorporated herein by reference.
  • Full activation, which occurs upon conformational change from a zymogen-like form, occurs upon binding to is co-factor tissue factor. Also, mutations can be introduced that result in the conformation change in the absence of tissue factor. Hence, reference to FVIIa includes both two-chain forms thereof, the zymogen-like form and the fully activated two-chain form.
  • In one embodiment, a clotting factor of the invention is a mature form of Factor VIII or a variant thereof. FVIII functions in the intrinsic pathway of blood coagulation as a cofactor to accelerate the activation of factor X by factor IXa, a reaction that occurs on a negatively charged phospholipid surface in the presence of calcium ions. FVIII is synthesized as a 2351 amino acid single-chain polypeptide having the domain structure A1-A2-B-A3-C1-C2. Wehar, G. A. et al., Nature 312:337-342 (1984) and Toole, J. J. et al., Nature 312:342-347 (1984). The domain structure of FVIII is identical to that of the homologous coagulation factor, factor V (FV). Kane, W. H. et al., PNAS (USA) 83:6800-6804 (1986) and Jenny, R. J. et al., PNAS (USA) 84:4846-4850 (1987). The FVIII A-domains are 330 amino acids and have 40% amino acid identity with each other and to the A-domain of FV and the plasma copper-binding protein ceruloplasmin. Takahashi, N. et al., PNAS (USA) 81:390-394 (1984). Each C-domain is 150 amino acids and exhibits 40% identity to the C-domains of FV, and to proteins that bind glycoconjugates and negatively charged phospholipids. Stubbs, J. D. et al., PNAS (USA) 87:8417-8421 (1990). The FVIII B-domain is encoded by a single exon and exhibits little homology to any known protein including FV B-domain. Gitschier, J. et al., Nature 312:326-330 (1984) and Cripe, L. D. et al., Biochemistry 31:3777-3785 (1992).
  • FVIII is secreted into plasma as a heterodimer of a heavy chain (domains A1-A2-B) and a light chain (domains A3-C1-C2) associated through a noncovalent divalent metal ion linkage between the A1- and A3-domains. In plasma, FVIII is stabilized by binding to von Willebrand factor. More specifically, the FVIII light chain is bound by noncovalent interactions to a primary binding site in the amino terminus of von Willebrand factor. Upon proteolytic activation by thrombin, FVIII is activated to a heterotrimer of 2 heavy chain fragments (A1, a 50 kDa fragment, and A2, a 43 kDa fragment) and the light chain (A3-C1-C2, a 73 kDa chain). The active form of FVIII (FVIIIa) thus consists of an A1-subunit associated through the divalent metal ion linkage to a thrombin-cleaved A3-C1-C2 light chain and a free A2 subunit associated with the A1 domain through an ion association. Eaton, D. et al., Biochemistry 25: 505 (1986); Lollar, P. et al., J. Biol. Chem. 266: 12481 (1991); and Fay, P. J. et al., J. Biol. Chem. 266: 8957 (1991). This FVIIIa heterotrimer is unstable and subject to rapid inactivation through dissociation of the A2 subunit under physiological conditions.
  • In one embodiment, a clotting factor comprises a B-domain deleted version of factor VIII. “B-domain” of Factor VIII, as used herein, is the same as the B-domain known in the art that is defined by internal amino acid sequence identity and sites of proteolytic cleavage, e.g., residues Ser741-Arg1648 of full-length human Factor VIII. The other human Factor VIII domains are defined by the following amino acid residues: A1, residues Ala1-Arg372; A2, residues Ser373-Arg740; A3, residues Ser1690-Asn2019; C1, residues Lys2020-Asn2172; C2, residues Ser2173-Tyr2332. The A3-C1-C2 sequence includes residues Ser1690-Tyr2332. The remaining sequence, residues Glu1649-Arg1689, is usually referred to as the a3 acidic region. The locations of the boundaries for all of the domains, including the B-domains, for porcine, mouse and canine Factor VIII are also known in the art. In one embodiment, the B domain of Factor VIII is deleted (“B-domain-deleted factor VIII” or “BDD FVIII”). An example of a BDD FVIII is REFACTO® (recombinant BDD FVIII with 5743/Q1638 fusion), which is known in the art.
  • A “B-domain-deleted Factor VIII” may have the full or partial deletions disclosed in U.S. Pat. Nos. 6,316,226, 6,346,513, 7,041,635, 5,789,203, 6,060,447, 5,595,886, 6,228,620, 5,972,885, 6,048,720, 5,543,502, 5,610,278, 5,171,844, 5,112,950, 4,868,112, and 6,458,563, each of which is incorporated herein by reference in its entirety. In some embodiments, a B-domain-deleted Factor VIII sequence of the present invention comprises any one of the deletions disclosed at col. 4, line 4 to col. 5, line 28 and examples 1-5 of U.S. Pat. No. 6,316,226 (also in U.S. Pat. No. 6,346,513). In another embodiment, a B-domain deleted Factor VIII is the 5743/Q1638 B-domain deleted Factor VIII (SQ version Factor VIII) (e.g., Factor VIII having a deletion from amino acid 744 to amino acid 1637, e.g., Factor VIII having amino acids 1-743 and amino acids 1638-2332 of SEQ ID NO: 6, i.e., SEQ ID NO: 2). In some embodiments, a B-domain-deleted Factor VIII of the present invention has a deletion disclosed at col. 2, lines 26-51 and examples 5-8 of U.S. Pat. No. 5,789,203 (also U.S. Pat. Nos. 6,060,447, 5,595,886, and 6,228,620). In some embodiments, a B-domain-deleted Factor VIII has a deletion described in col. 1, lines 25 to col. 2, line 40 of U.S. Pat. No. 5,972,885; col. 6, lines 1-22 and example 1 of U.S. Pat. No. 6,048,720; col. 2, lines 17-46 of U.S. Pat. No. 5,543,502; col. 4, line 22 to col. 5, line 36 of U.S. Pat. No. 5,171,844; col. 2, lines 55-68, FIG. 2, and example 1 of U.S. Pat. No. 5,112,950; col. 2, line 2 to col. 19, line 21 and table 2 of U.S. Pat. No. 4,868,112; col. 2, line 1 to col. 3, line 19, col. 3, line 40 to col. 4, line 67, col. 7, line 43 to col. 8, line 26, and col. 11, line 5 to col. 13, line 39 of U.S. Pat. No. 7,041,635; or col. 4, lines 25-53, of U.S. Pat. No. 6,458,563. In some embodiments, a B-domain-deleted Factor VIII has a deletion of most of the B domain, but still contains amino-terminal sequences of the B domain that are essential for in vivo proteolytic processing of the primary translation product into two polypeptide chain, as disclosed in WO 91/09122, which is incorporated herein by reference in its entirety. In some embodiments, a B-domain-deleted Factor VIII is constructed with a deletion of amino acids 747-1638, i.e., virtually a complete deletion of the B domain. Hoeben R. C., et al. J. Biol. Chem. 265 (13): 7318-7323 (1990), incorporated herein by reference in its entirety. A B-domain-deleted Factor VIII may also contain a deletion of amino acids 771-1666 or amino acids 868-1562 of Factor VIII. Meulien P., et al. Protein Eng. 2(4): 301-6 (1988), incorporated herein by reference in its entirety. Additional B domain deletions that are part of the invention include: deletion of amino acids 982 through 1562 or 760 through 1639 (Toole et al., Proc. Natl. Acad. Sci. U.S.A. (1986) 83, 5939-5942)), 797 through 1562 (Eaton, et al. Biochemistry (1986) 25:8343-8347)), 741 through 1646 (Kaufman (PCT published application No. WO 87/04187)), 747-1560 (Sarver, et al., DNA (1987) 6:553-564)), 741 though 1648 (Pasek (PCT application No. 88/00831)), or 816 through 1598 or 741 through 1648 (Lagner (Behring Inst. Mitt. (1988) No 82:16-25, EP 295597)), each of which is incorporated herein by reference in its entirety. Each of the foregoing deletions may be made in any Factor VIII sequence. In one embodiment, the invention pertains to a targeted version of FVIII, wherein the targeting (i) specifically binds to platelets, (ii) is not interposed between the light and heavy chains of the clotting factor, and wherein said chimeric clotting factor exhibits increased generation of thrombin in the presence of platelets as compared to an appropriate control lacking the at least one targeting moiety.
  • In one embodiment, a clotting factor of the invention is a mature form of Factor IX or a variant thereof. Factor IX circulates as a 415 amino acid, single chain plasma zymogen (A. Vysotchin et al., J. Biol. Chem. 268, 8436 (1993)). The zymogen of FIX is activated by FXIa or by the tissue factor/FVIIa complex. Specific cleavages between arginine-alanine 145-146 and arginine-valine 180-181 result in a light chain and a heavy chain linked by a single disulfide bond between cysteine 132 and cysteine 289 (S. Bajaj et al., Biochemistry 22, 4047 (1983)). The structural organization of FIX is similar to that of the vitamin K-dependent blood clotting proteins FVII, FX and protein C (B. Furie and B. Furie, supra). The approximately 45 amino acids of the amino terminus comprise the gamma-carboxyglutamic acid, or gla, domain. This is followed by two epidermal growth factor homology domains (EGF), an activation peptide and the catalytic “heavy chain” which is a member of the serine protease family (A. Vysotchin et al., J. Biol. Chem. 268, 8436 (1993); S. Spitzer et al., Biochemical Journal 265, 219 (1990); H. Brandstetter et al., Proc. Natl. Acad Sci. USA 92, 9796 (1995)).
  • In one embodiment, a clotting factor of the invention is a mature form of Factor X. Factor X is a vitamin-K dependent glycoprotein of a molecular weight of 58.5 kDa, which is secreted from liver cells into the plasma as a zymogen. Initially factor X is produced as a prepropeptide with a signal peptide consisting in total of 488 amino acids. The signal peptide is cleaved off by signal peptidase during export into the endoplasmatic reticulum, the propeptide sequence is cleaved off after gamma carboxylation took place at the first 11 glutamic acid residues at the N-terminus of the mature N-terminal chain. A further processing step occurs by cleavage between Arg182 and Ser183. This processing step also leads concomitantly to the deletion of the tripeptide Arg180-Lys181-Arg182. The resulting secreted factor X zymogen consists of an N-terminal light chain of 139 amino acids (M, 16,200) and a C-terminal heavy chain of 306 amino acids (M, 42,000) which are covalently linked via a disulfide bridge between Cys172 and Cys342. Further posttranslational processing steps include the .beta.-hydroxylation of Asp103 as well as N- and O-type glycosylation.
  • It will be understood that in addition to wild type (WT) versions of these clotting factors or biologically active portions thereof, the present invention may also employ precursor truncated forms thereof that have activity, allelic variants and species variants, variants encoded by splice variants, and other variants, including polypeptides that have at least 40%, 45%, 50%, 55%, 65%, 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99% or more sequence identity to the mature form of the clotting factor and which retain the ability to promote clot formation. For example, modified FVII polypeptides and variants thereof which retain at least one activity of a FVII, such as TF binding, factor X binding, phospholipid binding, and/or coagulant activity of a FVII may be employed. By retaining activity, the activity can be altered, such as reduced or increased, as compared to a wild-type clotting factor so long as the level of activity retained is sufficient to yield a detectable effect. Exemplary sequences of clotting factors that can be used in the constructs of the invention are found in the accompanying sequence listing.
  • Exemplary modified polypeptides include, but are not limited to, tissue-specific isoforms and allelic variants thereof, synthetic molecules prepared by translation of nucleic acids, proteins generated by chemical synthesis, such as syntheses that include ligation of shorter polypeptides, through recombinant methods, proteins isolated from human and non-human tissue and cells, chimeric polypeptides and modified forms thereof. The instant clotting factors may also consist of fragments or portions of WT molecules that are of sufficient length or include appropriate regions to retain at least one activity (upon activation if needed) of a full-length mature polypeptide. Exemplary clotting factor variants are known in the art.
  • As used herein, the term “Gla domain” refers to the conserved membrane binding motif which is present In vitamin K-dependent proteins, such as prothrombin, coagulation factors VII, IX and X, proteins C, S, and Z. These proteins require vitamin K for the posttranslational synthesis of g-carboxyglutamic acid, an amino acid clustered in the N-terminal Gla domain of these proteins. All glutamic residues present in the domain are potential carboxylation sites and many of them are therefore modified by carboxylation. In the presence of calcium ions, the Gla domain interacts with phospholipid membranes that include phosphatidylserine. The Gla domain also plays a role in binding to the FVIIa cofactor, tissue factor (TF). Complexed with TF, the Gla domain of FVIIa is loaded with seven Ca2+ ions, projects three hydrophobic side chains in the direction of the cell membrane for interaction with phospholipids on the cell surface, and has significant contact with the C-terminal domain of TF.
  • The Gla domain of factor VII comprises the uncommon amino acid—carboxyglutamic acid (Gla), which plays a vital role in the binding of clotting factors to negatively charged phospholipid surfaces.
  • The GLA domain is responsible for the high-affinity binding of calcium ions. It starts at the N-terminal extremity of the mature form of proteins and ends with a conserved aromatic residue. A conserved Gla-x(3)-Gla-x-Cys motif is found in the middle of the domain which seems to be important for substrate recognition by the carboxylase.
  • Using stopped-flow fluorescence kinetic measurements in combination with surface plasmon resonance analysis, the Gla domain has been found to be important in the sequence of events whereby the protease domain of FVIIa initiates contact with sTF (Biochemical and Biophysical Research Communications. 2005. 337:1276). In addition, clearance of clotting factors may be significantly mediated through Gla interactions, e.g., on liver cells and clearance receptors, e.g., EPCR.
  • In one embodiment, targeted clotting factors are modified to lack a Gla domain. The Gla domain is responsible for mediating clearance of clotting factors via multiple pathways, such as binding to liver cells, clearance receptors such as EPCR, etc. Thus, eliminating the Gla domain has beneficial effects on half life of clotting factors. Though Gla domain is also generally required for activity by localizing clotting factors to sites of coagulation, the inclusion of a platelet targeting domain moiety targets the Gla deleted clotting factor to platelets. In one embodiment, a clotting factor of the invention comprises a targeting moiety and lacks a Gla domain. For example, in the case of Factor VII, the Gla domain is present at the amino terminus of the light chain and consists of amino acids 1-35. The Gla domains of exemplary clotting factors are indicated in the accompanying sequence listing. This domain can be removed using standard molecular biology techniques, replaced with a targeting domain, and the modified light chain incorporated into a construct of the invention. In one embodiment, a cleavage site may be introduced into constructs lacking a Gla domain to facilitate activation of the molecule. For example, in one embodiment, such a cleavage site may be introduced between the amino acids that are cleaved when the clotting factor is activated (e.g., between amino acids 152 and 153 in the case of Factor VII). Exemplary clotting factors lacking a Gla domain are shown in the accompanying figures
  • In one embodiment, a cleavage site may be introduced into constructs lacking a Gla domain to facilitate activation of the molecule. For example, in one embodiment, such a cleavage site may be introduced between the amino acids that are cleaved when the clotting factor is activated (e.g., between amino acids 152 and 153 in the case of Factor VII). Exemplary clotting factors lacking a Gla domain are shown in the accompanying figures.
  • Exemplary clotting factors are those of mammalian, e.g., human, origin. The sequences of exemplary clotting factors are presented in the accompanying sequence listing, e.g., alone or in the context of a chimeric clotting factor construct.
  • III. Targeting Moieties
  • In one embodiment, a clotting factor of the invention is targeted to platelets to enhance its efficacy by localizing the clotting factor to the site of coagulation using a “targeting moiety” which binds to a target molecule expressed on platelets. Preferably the targeted molecules are not expressed on cells or tissues other than platelets, i.e., the targeting moieties specifically bind to platelets.
  • In one embodiment, receptors/conformations found on resting platelets are targeted. By doing so, sites for coagulation could be primed for enhanced efficacy. Targeting such molecule may also extend half life of the clotting factor and/or prevent clearance. Examples of such targets include GpIb of the GpIb/V/IX complex, and GpVI and nonactive form of GPIIb/IIIa.
  • In one embodiment, receptors/conformations only found on activated platelets are targeted in order to localize the clotting factor to site of active coagulation. Examples of such targets include, e.g., the active form of GpIIb/IIIa as well as CD62P.
  • In one embodiment, a polypeptide of the invention comprises a “targeting moiety” which has affinity for and binds to platelets. For example, in one embodiment, a targeting moiety binds to the GPIb complex, e.g, GPIb-alpha. Examples of such targeting moieties include the peptides PS4, OS1, and OS2 which bind to both active and nonactive platelets (Benard et al. 2008 Biochemistry 47:4674); In another embodiment, a targeting moiety binds to the active conformation of GPIIbIIIa. Examples of such targeting moieties inlcude SCE5 and MB9 variable regions which bind active platelets only (Schwarz et al. 2004 FASEB Journal express article 10.1096/fj.04-1513fje; Schwarz et al. 2006 Circulation Research. 99:25-33; U.S. Patent publication 20070218067). In another embodiment, a targeting moiety binds to both the active/nonactive conformation of GPIIbIIIa. An example of such a targeting moiety is the variable region of the AP3 antibody (Peterson et al. 2003. Hemostasis, Thrombosis, and Vascular Biology 101:937; WO 2010115866). Other targets and targeting moieties are known in the art. Another version of factor IX (the triple mutant V86A/E277A/R338A) with augmented clotting activities has been described by Lin et al. 2010. Journal of Thrombosis and Hemostasis 8: 1773). The contents of these references are incorporated herein by this reference.
  • The chimeric clotting factors of the invention can comprise one or more than one targeting moiety. Exemplary configurations are set forth in the accompanying Figures. Additionally, two or more targeting moieties may be linked to each other (e.g., via a spacer) in series, and the tandem array operably linked to a construct of the invention. When two or more targeting moieties are present in a chimeric clotting factor of the invention, the moieties may be the same or different.
  • In one embodiment, a targeting moiety is fused to a chimeric clotting factor of the invention by a cleaveable linker which may be cleaved to remove the targeting moiety at the site of a clot. In another embodiment, a targeting moiety is not attached via a cleaveable linker and, therefore, is not cleaved at the site of a clot.
  • In one embodiment, the targeting moiety is located on the N- or C-terminus of factor VIII. In another embodiment, a targeting moiety is located on the C-terminus of FVII, FIX, FX, or the C-terminus of either or both chains of FVIIa, FIXa, of FXa. In embodiments in which an Fc region or portion thereof is employed, the targeting moiety may be positioned at the N or C terminus of the second Fc chain, or the C-terminus of either or both Fc chains.
  • In one embodiment, a targeting moiety is not genetically fused directly to a construct, but rather is linked via a spacer or a chemical bond to the construct. For example, targeting moieties may be attached to a construct of the invention by formation of a bond between the targeting moiety and an Fc moiety of a construct, where the targeting moiety comprises a first functional group and the Fc moiety comprises a second functional group, and where the first and second functional groups are capable of reacting with each other to form a chemical bond (see, e.g., U.S. Pat. No. 7,381,408).
  • In one embodiment, a polypeptide of the invention comprises at least one of an antigen binding site (e.g., an antigen binding site of an antibody, antibody variant, or antibody fragment), a polypeptide, a receptor binding portion of ligand, or a ligand binding portion of a receptor which specifically binds to platelets, e.g., resting or activated platelets. Exemplary targeting moieties include scFv molecules or peptides which bind to molecules to be targeted. Examples of targeting moieties are found in the instant examples and Figures. Other molecules useful as targeting moieties can readily be selected by one of skill in the art based upon the teaching herein.
  • A. Antigen Binding Sites Which Bind to Platelets
  • In certain embodiments, a polypeptide of the invention comprises at least one antigen binding portion (e.g., binding site) of an antibody. In one embodiment, the antigen binding portion targets the polypeptide to platelets
  • In other embodiments, a polypeptide of the invention may comprise an antigen binding portion. The term “antigen-binding portion” refers to a polypeptide fragment of an immunoglobulin, antibody, or antibody variant which binds antigen or competes with intact antibody (i.e., with the intact antibody from which they were derived) for antigen binding (i.e., specific binding). For example, said antigen binding portions can be derived from any of the antibodies or antibody variants described supra. Antigen binding portions can be produced by recombinant or biochemical methods that are well known in the art. Exemplary antigen-binding portions include Fv, Fab, Fab′, and (Fab′)2 as well as scFv molecules.
  • In other embodiments, a chimeric clotting factor of the invention may comprise a binding site from single chain binding molecule (e.g., a single chain variable region or scFv). Techniques described for the production of single chain antibodies (U.S. Pat. No. 4,694,778; Bird, Science 242:423-442 (1988); Huston et al., Proc. Natl. Acad. Sci. USA 85:5879-5883 (1988); and Ward et al., Nature 334:544-554 (1989)) can be adapted to produce single chain binding molecules. Single chain antibodies are formed by linking the heavy and light chain fragments of the Fv region via an amino acid bridge, resulting in a single chain antibody. Techniques for the assembly of functional Fv fragments in E coli may also be used (Skerra et al., Science 242:1038-1041 (1988)).
  • In certain embodiments, a polypeptide of the invention comprises one or more binding sites or regions comprising or consisting of a single chain variable region sequence (scFv). Single chain variable region sequences comprise a single polypeptide having one or more antigen binding sites, e.g., a VL domain linked by a flexible linker to a VH domain. The VL and/or VH domains may be derived from any of the antibodies or antibody variants described supra. ScFv molecules can be constructed in a VH-linker-VL orientation or VL-linker-VH orientation. The flexible linker that links the VL and VH domains that make up the antigen binding site preferably comprises from about 10 to about 50 amino acid residues. In one embodiment, the polypeptide linker is a gly-ser polypeptide linker. An exemplary gly/ser polypeptide linker is of the formula (Gly4Ser)n, wherein n is a positive integer (e.g., 1, 2, 3, 4, 5, or 6). Other polypeptide linkers are known in the art. Antibodies having single chain variable region sequences (e.g. single chain Fv antibodies) and methods of making said single chain antibodies are well-known in the art (see e.g., Ho et al. 1989. Gene 77:51; Bird et al. 1988 Science 242:423; Pantoliano et al. 1991. Biochemistry 30:10117; Milenic et al. 1991. Cancer Research 51:6363; Takkinen et al. 1991. Protein Engineering 4:837).
  • In certain embodiments, a scFv molecule employed in a polypeptide of the invention is a stabilized scFv molecule. In one embodiment, the stabilized cFv molecule may comprise a scFv linker interposed between a VH domain and a VL domain, wherein the VH and VL domains are linked by a disulfide bond between an amino acid in the VH and an amino acid in the VL domain. In other embodiments, the stabilized scFv molecule may comprise a scFv linker having an optimized length or composition. In yet other embodiments, the stabilized scFv molecule may comprise a VH or VL domain having at least one stabilizing amino acid substitution(s). In yet another embodiment, a stabilized scFv molecule may have at least two of the above listed stabilizing features.
  • Stabilized scFv molecules have improved protein stability or impart improved protein stability to the polypeptide to which it is operably linked. Preferred scFv linkers of the invention improve the thermal stability of a polypeptide of the invention by at least about 2° C. or 3° C. as compared to a conventional polypeptide Comparisons can be made, for example, between the scFv molecules of the invention. In certain preferred embodiments, the stabilized scFv molecule comprises a (Gly4Ser)4 scFv linker and a disulfide bond which links VH amino acid 44 and VL amino acid 100. Other exemplary stabilized scFv molecules which may be employed in the polypeptides of the invention are described in U.S. Provisional Patent Application No. 60/873,996, filed on Dec. 8, 2006 or U.S. patent application Ser. No. 11/725,970, filed on Mar. 19, 2007, each of which is incorporated herein by reference in its entirety.
  • Polypeptides of the invention may comprise a variable region or portion thereof (e.g. a VL and/or VH domain) derived from an antibody using art recognized protocols. For example, the variable domain may be derived from antibody produced in a non-human mammal, e.g., murine, guinea pig, primate, rabbit or rat, by immunizing the mammal with the antigen or a fragment thereof. See Harlow & Lane, supra, incorporated by reference for all purposes. The immunoglobulin may be generated by multiple subcutaneous or intraperitoneal injections of the relevant antigen (e.g., purified tumor associated antigens or cells or cellular extracts comprising such antigens) and an adjuvant. This immunization typically elicits an immune response that comprises production of antigen-reactive antibodies from activated splenocytes or lymphocytes.
  • While the variable region may be derived from polyclonal antibodies harvested from the serum of an immunized mammal, it is often desirable to isolate individual lymphocytes from the spleen, lymph nodes or peripheral blood to provide homogenous preparations of monoclonal antibodies (MAbs) from which the desired variable region is derived. Rabbits or guinea pigs are typically used for making polyclonal antibodies. Mice are typically used for making monoclonal antibodies. Monoclonal antibodies can be prepared against a fragment by injecting an antigen fragment into a mouse, preparing “hybridomas” and screening the hybridomas for an antibody that specifically binds to the antigen. In this well known process (Kohler et al., (1975), Nature, 256:495) the relatively short-lived, or mortal, lymphocytes from the mouse which has been injected with the antigen are fused with an immortal tumor cell line (e.g. a myeloma cell line), thus, producing hybrid cells or “hybridomas” which are both immortal and capable of producing the antibody genetically encoded by the B cell. The resulting hybrids are segregated into single genetic strains by selection, dilution, and regrowth with each individual strain comprising specific genes for the formation of a single antibody. They produce antibodies which are homogeneous against a desired antigen and, in reference to their pure genetic parentage, are termed “monoclonal”.
  • Hybridoma cells thus prepared are seeded and grown in a suitable culture medium that preferably contains one or more substances that inhibit the growth or survival of the unfused, parental myeloma cells. Those skilled in the art will appreciate that reagents, cell lines and media for the formation, selection and growth of hybridomas are commercially available from a number of sources and standardized protocols are well established. Generally, culture medium in which the hybridoma cells are growing is assayed for production of monoclonal antibodies against the desired antigen. Preferably, the binding specificity of the monoclonal antibodies produced by hybridoma cells is determined by immunoprecipitation or by an in vitro assay, such as a radioimmunoassay (RIA) or enzyme-linked immunosorbent assay (ELISA). After hybridoma cells are identified that produce antibodies of the desired specificity, affinity and/or activity, the clones may be subcloned by limiting dilution procedures and grown by standard methods (Goding, Monoclonal Antibodies: Principles and Practice, pp 59-103 (Academic Press, 1986)). It will further be appreciated that the monoclonal antibodies secreted by the subclones may be separated from culture medium, ascites fluid or serum by conventional purification procedures such as, for example, affinity chromatography (e.g., protein-A, protein-G, or protein-L affinity chromatography), hydroxylapatite chromatography, gel electrophoresis, or dialysis.
  • Optionally, antibodies may be screened for binding to platelets of a specific activation state or to a specific region or desired fragment of the antigen without binding to other nonoverlapping fragments of the antigen. The latter screening can be accomplished by determining binding of an antibody to a collection of deletion mutants of the antigen and determining which deletion mutants bind to the antibody. Binding can be assessed, for example, by Western blot or ELISA. The smallest fragment to show specific binding to the antibody defines the epitope of the antibody. Alternatively, epitope specificity can be determined by a competition assay is which a test and reference antibody compete for binding to the antigen. If the test and reference antibodies compete, then they bind to the same epitope or epitopes sufficiently proximal such that binding of one antibody interferes with binding of the other.
  • DNA encoding the desired monoclonal antibody or binding site thereof may be readily isolated and sequenced using any of the conventional procedures described supra for the isolation of constant region domain sequences (e.g., by using oligonucleotide probes that are capable of binding specifically to genes encoding the heavy and light chains of murine antibodies). The isolated and subcloned hybridoma cells serve as a preferred source of such DNA. More particularly, the isolated DNA (which may be synthetic as described herein) may be used to clone the desired variable region sequences for incorporation in the polypeptides of the invention.
  • In other embodiments, the binding site is derived from a fully human antibody. Human or substantially human antibodies may be generated in transgenic animals (e.g., mice) that are incapable of endogenous immunoglobulin production (see e.g., U.S. Pat. Nos. 6,075,181, 5,939,598, 5,591,669 and 5,589,369, each of which is incorporated herein by reference). For example, it has been described that the homozygous deletion of the antibody heavy-chain joining region in chimeric and germ-line mutant mice results in complete inhibition of endogenous antibody production. Transfer of a human immunoglobulin gene array to such germ line mutant mice will result in the production of human antibodies upon antigen challenge. Another preferred means of generating human antibodies using SCID mice is disclosed in U.S. Pat. No. 5,811,524 which is incorporated herein by reference. It will be appreciated that the genetic material associated with these human antibodies may also be isolated and manipulated as described herein.
  • In other aspects, the polypeptides of the invention may comprise antigen binding sites, or portions thereof, derived from modified forms of antibodies. Exemplary such forms include, e.g., minibodies, diabodies, triabodies, nanobodies, camelids, Dabs, tetravalent antibodies, intradiabodies (e.g., Jendreyko et al. 2003. J. Biol. Chem. 278:47813), fusion proteins (e.g., antibody cytokine fusion proteins, proteins fused to at least a portion of an Fc receptor), and bispecific antibodies. Other modified antibodies are described, for example in U.S. Pat. No. 4,745,055; EP 256,654; Faulkner et al., Nature 298:286 (1982); EP 120,694; EP 125,023; Morrison, J. Immun. 123:793 (1979); Kohler et al., Proc. Natl. Acad. Sci. USA 77:2197 (1980); Raso et al., Cancer Res. 41:2073 (1981); Morrison et al., Ann. Rev. Immunol. 2:239 (1984); Morrison, Science 229:1202 (1985); Morrison et al., Proc. Natl. Acad. Sci. USA 81:6851 (1984); EP 255,694; EP 266,663; and WO 88/03559. Reassorted immunoglobulin chains also are known. See, for example, U.S. Pat. No. 4,444,878; WO 88/03565; and EP 68,763 and references cited therein.
  • In another embodiment, a chimeric clotting factor of the invention comprises an antigen binding site or region which is a diabody or an antigen binding site derived therefrom. Diabodies are dimeric, tetravalent molecules each having a polypeptide similar to scFv molecules, but usually having a short (e.g., less than 10 and preferably 1-5) amino acid residue linker connecting both variable domains, such that the VL and VH domains on the same polypeptide chain cannot interact. Instead, the VL and VH domain of one polypeptide chain interact with the VH and VL domain (respectively) on a second polypeptide chain (see, for example, WO 02/02781). In one embodiment, a polypeptide of the invention comprises a diabody which is operably linked to the N-terminus and/or C-terminus of at least one genetically-fused Fc region (i.e., scFc region).
  • In certain embodiments, a polypeptide of the invention comprises a single domain binding molecule (e.g. a single domain antibody) as a targeting moiety. Exemplary single domain molecules include an isolated heavy chain variable domain (VH) of an antibody, i.e., a heavy chain variable domain, without a light chain variable domain, and an isolated light chain variable domain (VL) of an antibody, i.e., a light chain variable domain, without a heavy chain variable domain. Exemplary single-domain antibodies employed in the binding molecules of the invention include, for example, the Camelid heavy chain variable domain (about 118 to 136 amino acid residues) as described in Hamers-Casterman, et al., Nature 363:446-448 (1993), and Dumoulin, et al., Protein Science 11:500-515 (2002). Other exemplary single domain antibodies include single VH or VL domains, also known as Dabs® (Domantis Ltd., Cambridge, UK). Yet other single domain antibodies include shark antibodies (e.g., shark Ig-NARs). Shark Ig-NARs comprise a homodimer of one variable domain (V-NAR) and five C-like constant domains (C-NAR), wherein diversity is concentrated in an elongated CDR3 region varying from 5 to 23 residues in length. In camelid species (e.g., llamas), the heavy chain variable region, referred to as VHH, forms the entire antigen-binding domain. The main differences between camelid VHH variable regions and those derived from conventional antibodies (VH) include (a) more hydrophobic amino acids in the light chain contact surface of VH as compared to the corresponding region in VHH, (b) a longer CDR3 in VHH, and (c) the frequent occurrence of a disulfide bond between CDR1 and CDR3 in VHH. Methods for making single domain binding molecules are described in U.S. Pat. Nos. 6,005,079 and 6,765,087, both of which are incorporated herein by reference. Exemplary single domain antibodies comprising VHH domains include Nanobodies® (Ablynx NV, Ghent, Belgium).
  • Exemplary antibodies from which binding sites can be derived for use in the binding molecules of the invention are known in the art. Examples of such targeting moieties inlcude SCE5 and MB9 variable regions which bind active platelets only (Schwarz et al. 2004 FASEB Journal express article 10.1096/fj.04-1513fje; Schwarz et al. 2006 Circulation Research. 99:25-33; U.S. Patent publication 20070218067). In another embodiment, a targeting moiety binds to both the active/nonactive conformation of GPIIbIIIa. An example of such a targeting moiety is the variable region of the AP3 antibody (Peterson et al. 2003. Hemostasis, Thrombosis, and Vascular Biology 101:937; WO 2010115866).
  • B. Non-Immunoglobulin Platelet Binding Molecules
  • In certain other embodiments, the polypeptides of the invention comprise one or more platelet binding sites derived from a non-immunoglobulin binding molecule. As used herein, the term “non-immunoglobulin binding molecules” are binding molecules whose binding sites comprise a portion (e.g., a scaffold or framework) which is derived from a polypeptide other than an immunoglobulin, but which may be engineered (e.g., mutagenized) to confer a desired binding specificity to a platelet target Other examples of binding molecules comprising binding sites not derived from antibody molecules include receptor binding sites and ligand binding sites which bind to platelets.
  • Non-immunoglobulin binding molecules may be identified by selection or isolation of a target-binding variant from a library of binding molecules having artificially diversified binding sites. Diversified libraries can be generated using completely random approaches (e.g., error-prone PCR, exon shuffling, or directed evolution) or aided by art-recognized design strategies. For example, amino acid positions that are usually involved when the binding site interacts with its cognate target molecule can be randomized by insertion of degenerate codons, trinucleotides, random peptides, or entire loops at corresponding positions within the nucleic acid which encodes the binding site (see e.g., U.S. Pub. No. 20040132028). The location of the amino acid positions can be identified by investigation of the crystal structure of the binding site in complex with the target molecule. Candidate positions for randomization include loops, flat surfaces, helices, and binding cavities of the binding site. In certain embodiments, amino acids within the binding site that are likely candidates for diversification can be identified using techniques known in the art. Following randomization, the diversified library may then be subjected to a selection or screening procedure to obtain binding molecules with the desired binding characteristics, e.g. specific binding platelets using methods known in the art. Selection can be achieved by art-recognized methods such as phage display, yeast display, or ribosome display. In one embodiment, molecules known in the art to bind to platelets may be employed in the constructs of the invention. For example, peptides which bind to GPIba as described in the art (e.g., PS4, 0S1, or 0S2) may be used (Benard et al. 2008. Biochemistry 47:4674-4682).
  • IV. Activatable Clotting Factors
  • Clotting factors given for bypass therapy are efficacious when given in the activated form, since exogenous clotting factors are often not activated with sufficient kinetics to be effective. However, they are also rapidly inactivated by endogenous pathways (e.g., by antithrombin III or TFPI), leading to clearance of the active form and a short effective half life. In one embodiment, a chimeric clotting factor of the invention is “activatable.” Such activatable constructs circulate as an enhanced zymogen with a longer half life, but can be readily cleaved at the site of clotting when necessary.
  • In one embodiment, an activatable construct of the invention comprises a cleavable linker comprising, e.g., a factor XIa, Xa, or thrombin cleavage site (which is cleaved by factor XIa, Xa, or thrombin, respectively) leading to formation of the active form of the clotting factor at the site of a clot. Exemplary factor FXIa cleavage sites include, e.g., TQSFNDFTR and SVSQTSKLTR. Exemplary thrombin cleavage sites include, e.g., DFLAEGGGVR, TTKIKPR, and a sequence comprising or consisting of ALRPR (e.g. ALRPRVVGGA)).
  • In one embodiment, the cleavable linker may be flanked on one or more sides (upstream, downstream or both) by a spacer moiety.
  • In one embodiment, the cleavable linker is interposed between the light chain and heavy chain of the clotting factor. In another embodiment, the cleavable linker is not interposed between the light chain and heavy chain of the clotting factor. In one embodiment, the cleavable linker is located amino terminal to the heavy chain.
  • Exemplary activatable constructs are shown in the accompanying Figures and following Examples.
  • V. Scaffold Moieties
  • Some embodiments of the invention comprise a scaffold moiety, which can be selected from, e.g., a protein moiety, cscFc region, a Fc moiety, albumin, XTEN, etc.
  • A. Protein Moieties
  • In one embodiment, the scaffold is a protein moiety. Such a moiety may comprise a complete protein or a portion thereof, or a synthetic molecule. Preferred protein moieties are of a sufficient molecular size that they improve the half life of a chimeric clotting factor of the invention when incorporated into a construct. For example, in one embodiment, an artificial protein, XTEN, may be included in a construct as a scaffold (Schellenberger et al. 2009. 27:1186). In another embodiment, albumin (e.g., human serum albumin) may be included in a construct of the invention. For example, as known in the art, serum albumin (for example, HSA) can be used as a protein scaffold. In particular various domains and sub-domains of HSA, have a structure that is quite amenable to mutation or randomization for the generation of serum albumin scaffold-based protein libraries. Examples of albumin, e.g., fragments thereof, that may be used in the present invention are known. e.g., U.S. Pat. Nos. 7,592,010; 6,686,179; and Schulte, Thrombosis Res. 124 Suppl. 2:S6-S8 (2009), each of which is incorporated herein by reference in its entirety.
  • B. scFc Regions
  • In one embodiment, the invention provides for polypeptides comprising at least one genetically fused Fc region or portion thereof within a single polypeptide chain (i.e., polypeptides comprising a single-chain Fc (scFc) region) in one embodiment, comprising a cscFc.
  • In one embodiment, a chimeric clotting factor which comprises a clotting factor selected from the group consisting of FVII, FIX and FX and a targeting moiety which binds to platelets and optionally a spacer moiety between the clotting factor and the targeting moiety. In another embodiment, polypeptide comprising FVII, which FVII comprises a heterologous enzymatic cleavage site activatable by a component of the clotting cascade.
  • In one embodiment, the invention provides unprocessed polypeptides in which at least two Fc moieties or domains (e.g., 2, 3, 4, 5, 6, or more Fc moieties or domains) within the same linear polypeptide chain that are capable of folding (e.g., intramolecularly or intermolecularly folding) to form one functional scFc region which is linked by an Fc polypeptide linker. For example, in one preferred embodiment, a polypeptide of the invention is capable of binding, via its scFc region, to at least one Fc receptor (e.g. an FcRn, an FcγR receptor (e.g., FcγRIII), or a complement protein (e.g. C1q)) in order to improve half life or trigger an immune effector function (e.g., antibody-dependent cytotoxicity (ADCC), phagocytosis, or complement-dependent cytotoxicity (CDCC) and/or to improve manufacturability).
  • A variety of polypeptides of alternative designs are within the scope of the invention.
  • For example, in one embodiment, a polypeptide comprises the moieties:

  • A-F1-P1-L-P2-B-F2  (I)
  • in linear sequence from the amino to carboxy terminus wherein A, if present, is a clotting factor or portion thereof, F1 is a first Fc moiety or domain, P1 is an enzymatic cleavage site, L is an ScFc linker, P2 is an enzymatic cleavage site B, if present, is a clotting factor or portion thereof, F2 is a second Fc moiety or domain and “-” represents a peptide bond. Formula (I) comprises at least an A or B and optionally both. A and B, if both present, can be the corresponding heavy and light chains of a clotting factor. Formula (I) comprises at least a P1 or P2 and optionally both. P1 and P2, if both present, can be the same or different. Formula (I) comprises at least a F1 and F2. F1 and F2, if both present, can be the same or different.
  • Exemplary polypeptides according to formula I include: A-F1-P1-L-P2-F2; F1-P1-L-P2-B-F2; A-F1-P1-L-F2; F1-P1-L-B-F2; A-F1-L-P2-F2; and F1-L-P2-B-F2.
  • In one embodiment, F1 and F2 each comprise a CH2 and CH3 moiety.
  • In one embodiment, after cleavage and substantial excision of the cscFc linker (L), a polypeptide of the invention comprises two polypeptide chains where the first polypeptide chain comprises A linked to a first Fc moiety and where the second polypeptide chain comprises B linked to a second Fc moiety, where F1 and F2 dimerize to form an Fc region. In one embodiment, A and B are optionally present and are clotting factors or portions thereof.
  • In one embodiment, A is the light chain of a clotting factor and B is the heavy chain of a clotting factor. In one embodiment, B is the light chain of a clotting factor and A is the heavy chain of a clotting factor. In one embodiment, when A and B associate in the polypeptide, the polypeptide then forms a functional clotting factor, e.g., FVII, FIX or FX. In one embodiment, such a polypeptide is enzymatically active upon secretion from a cell.
  • i) Fc Moieties or Domains
  • Fc moieties useful as F1 and F2 for producing the polypeptides of the present invention may be obtained from a number of different sources. In preferred embodiments, an Fc moiety of the polypeptide is derived from a human immunoglobulin. It is understood, however, that the Fc moiety may be derived from an immunoglobulin of another mammalian species, including for example, a rodent (e.g. a mouse, rat, rabbit, guinea pig) or non-human primate (e.g. chimpanzee, macaque) species. Moreover, the polypeptide Fc domain or portion thereof may be derived from any immunoglobulin class, including IgM, IgG, IgD, IgA and IgE, and any immunoglobulin isotype, including IgG1, IgG2, IgG3 and IgG4. In a preferred embodiment, the human isotype IgG1 is used.
  • A variety of Fc moiety gene sequences (e.g. human constant region gene sequences) are available in the form of publicly accessible deposits. Constant region domains comprising an Fc moiety sequence can be selected having a particular effector function (or lacking a particular effector function) or with a particular modification to reduce immunogenicity. Many sequences of antibodies and antibody-encoding genes have been published and suitable Fc moiety sequences (e.g. hinge, CH2, and/or CH3 sequences, or portions thereof) can be derived from these sequences using art recognized techniques. The genetic material obtained using any of the foregoing methods may then be altered or synthesized to obtain polypeptides of the present invention. It will further be appreciated that the scope of this invention encompasses alleles, variants and mutations of constant region DNA sequences.
  • Fc moiety sequences can be cloned, e.g., using the polymerase chain reaction and primers which are selected to amplify the domain of interest. To clone an Fc moiety sequence from an antibody, mRNA can be isolated from hybridoma, spleen, or lymph cells, reverse transcribed into DNA, and antibody genes amplified by PCR. PCR amplification methods are described in detail in U.S. Pat. Nos. 4,683,195; 4,683,202; 4,800,159; 4,965,188; and in, e.g., “PCR Protocols: A Guide to Methods and Applications” Innis et al. eds., Academic Press, San Diego, Calif. (1990); Ho et al. 1989. Gene 77:51; Horton et al. 1993. Methods Enzymol. 217:270). PCR may be initiated by consensus constant region primers or by more specific primers based on the published heavy and light chain DNA and amino acid sequences. As discussed above, PCR also may be used to isolate DNA clones encoding the antibody light and heavy chains. In this case the libraries may be screened by consensus primers or larger homologous probes, such as mouse constant region probes. Numerous primer sets suitable for amplification of antibody genes are known in the art (e.g., 5′ primers based on the N-terminal sequence of purified antibodies (Benhar and Pastan. 1994. Protein Engineering 7:1509); rapid amplification of cDNA ends (Ruberti, F. et al. 1994. J. Immunol. Methods 173:33); antibody leader sequences (Larrick et al. 1989 Biochem. Biophys. Res. Commun. 160:1250). The cloning of antibody sequences is further described in Newman et al., U.S. Pat. No. 5,658,570, filed Jan. 25, 1995, which is incorporated by reference herein.
  • The polypeptides of the invention may comprise two or more Fc moieties (e.g., 2, 3, 4, 5, 6, 7, 8, 9, 10, or more Fc moieties). These two or more Fc moieties can form a Fc region. In one embodiment, the Fc moieties may be of different types. In one embodiment, at least one Fc moiety present in the polypeptide comprises a hinge domain or portion thereof. In another embodiment, the polypeptide of the invention comprises at least one Fc moiety which comprises at least one CH2 domain or portion thereof. In another embodiment, the polypeptide of the invention comprises at least one Fc moiety which comprises at least one CH3 domain or portion thereof. In another embodiment, the polypeptide of the invention comprises at least one Fc moiety which comprises at least one CH4 domain or portion thereof. In another embodiment, the polypeptide of the invention comprises at least one Fc moiety which comprises at least one hinge domain or portion thereof and at least one CH2 domain or portion thereof (e.g, in the hinge-CH2 orientation). In another embodiment, the polypeptide of the invention comprises at least one Fc moiety which comprises at least one CH2 domain or portion thereof and at least one CH3 domain or portion thereof (e.g, in the CH2-CH3 orientation). In another embodiment, the polypeptide of the invention comprises at least one Fc moiety comprising at least one hinge domain or portion thereof, at least one CH2 domain or portion thereof, and least one CH3 domain or portion thereof, for example in the orientation hinge-CH2-CH3, hinge-CH3-CH2, or CH2-CH3-hinge.
  • In certain embodiments, the polypeptide comprises at least one complete Fc region derived from one or more immunoglobulin heavy chains (e.g., an Fc domain including hinge, CH2, and CH3 domains, although these need not be derived from the same antibody). In other embodiments, the polypeptide comprises at least two complete Fc regions derived from one or more immunoglobulin heavy chains. In preferred embodiments, the complete Fc moiety is derived from a human IgG immunoglobulin heavy chain (e.g., human IgG1).
  • In another embodiment, a polypeptide of the invention comprises at least one Fc moiety comprising a complete CH3 domain (about amino acids 341-438 of an antibody Fc region according to EU numbering). In another embodiment, a polypeptide of the invention comprises at least one Fc moiety comprising a complete CH2 domain (about amino acids 231-340 of an antibody Fc region according to EU numbering). In another embodiment, a polypeptide of the invention comprises at least one Fc moiety comprising at least a CH3 domain, and at least one of a hinge region (about amino acids 216-230 of an antibody Fc region according to EU numbering), and a CH2 domain. In one embodiment, a polypeptide of the invention comprises at least one Fc moiety comprising a hinge and a CH3 domain. In another embodiment, a polypeptide of the invention comprises at least one Fc moiety comprising a hinge, a CH2, and a CH3 domain. In preferred embodiments, the Fc moiety is derived from a human IgG immunoglobulin heavy chain (e.g., human IgG1). In one embodiment, an Fc moiety comprises or consists of amino acids corresponding to EU numbers 221 to 447.
  • In another embodiment, a polypeptide of the invention comprises at least one Fc moiety comprising an FcRn binding partner. An FcRn binding partner is a molecule or portion thereof that can be specifically bound by the FcRn receptor with consequent active transport by the FcRn receptor of the FcRn binding partner. Specifically bound refers to two molecules forming a complex that is relatively stable under physiologic conditions. Specific binding is characterized by a high affinity and a low to moderate capacity as distinguished from nonspecific binding which usually has a low affinity with a moderate to high capacity. Typically, binding is considered specific when the affinity constant KA is higher than 106 M−1, or more preferably higher than 108 M−1. If necessary, non-specific binding can be reduced without substantially affecting specific binding by varying the binding conditions. The appropriate binding conditions such as concentration of the molecules, ionic strength of the solution, temperature, time allowed for binding, concentration of a blocking agent (e.g. serum albumin, milk casein), etc., may be optimized by a skilled artisan using routine techniques.
  • The FcRn receptor has been isolated from several mammalian species including humans. The sequences of the human FcRn, monkey FcRn rat FcRn, and mouse FcRn are known (Story et al. 1994, J. Exp. Med. 180:2377). The FcRn receptor binds IgG (but not other immunoglobulin classes such as IgA, IgM, IgD, and IgE) at relatively low pH, actively transports the IgG transcellularly in a luminal to serosal direction, and then releases the IgG at relatively higher pH found in the interstitial fluids. It is expressed in adult epithelial tissue (U.S. Pat. Nos. 6,485,726, 6,030,613, 6,086,875; WO 03/077834; U52003-0235536A1) including lung and intestinal epithelium (Israel et al. 1997, Immunology 92:69) renal proximal tubular epithelium (Kobayashi et al. 2002, Am. J. Physiol. Renal Physiol. 282:F358) as well as nasal epithelium, vaginal surfaces, and biliary tree surfaces.
  • FcRn binding partners of the present invention encompass molecules that can be specifically bound by the FcRn receptor including whole IgG, the Fc fragment of IgG, and other fragments that include the complete binding region of the FcRn receptor. The region of the Fc portion of IgG that binds to the FcRn receptor has been described based on X-ray crystallography (Burmeister et al. 1994, Nature 372:379). The major contact area of the Fc with the FcRn is near the junction of the CH2 and CH3 domains. Fc-FcRn contacts are all within a single Ig heavy chain. The FcRn binding partners include whole IgG, the Fc fragment of IgG, and other fragments of IgG that include the complete binding region of FcRn. The major contact sites include amino acid residues 248, 250-257, 272, 285, 288, 290-291, 308-311, and 314 of the CH2 domain and amino acid residues 385-387, 428, and 433-436 of the CH3 domain. References made to amino acid numbering of immunoglobulins or immunoglobulin fragments, or regions, are all based on Kabat et al. 1991, Sequences of Proteins of Immunological Interest, U.S. Department of Public Health, Bethesda, Md.
  • The Fc region of IgG can be modified according to well recognized procedures such as site directed mutagenesis and the like to yield modified IgG or Fc fragments or portions thereof that will be bound by FcRn. Such modifications include modifications remote from the FcRn contact sites as well as modifications within the contact sites that preserve or even enhance binding to the FcRn. For example, the following single amino acid residues in human IgG1 Fc (Fc yl) can be substituted without significant loss of Fc binding affinity for FcRn: P238A, S239A, K246A, K248A, D249A, M252A, T256A, E258A, T260A, D265A, S267A, H268A, E269A, D270A, E272A, L274A, N276A, Y278A, D280A, V282A, E283A, H285A, N286A, T289A, K290A, R292A, E293A, E294A, Q295A, Y296F, N297A, S298A, Y300F, R301A, V303A, V305A, T307A, L309A, Q311A, D312A, N315A, K317A, E318A, K320A, K322A, S324A, K326A, A327Q, P329A, A330Q, P331A, E333A, K334A, T335A, S337A, K338A, K340A, Q342A, R344A, E345A, Q347A, R355A, E356A, M358A, T359A, K360A, N361A, Q362A, Y373A, S375A, D376A, A378Q, E380A, E382A, S383A, N384A, Q386A, E388A, N389A, N390A, Y391F, K392A, L398A, S400A, D401A, D413A, K414A, R416A, Q418A, Q419A, N421A, V422A, S424A, E430A, N434A, T437A, Q438A, K439A, S440A, S444A, and K447A, where for example P238A represents wildtype proline substituted by alanine at position number 238. As an example, one specific embodiment, incorporates the N297A mutation, removing a highly conserved N-glycosylation site. In addition to alanine other amino acids may be substituted for the wildtype amino acids at the positions specified above. Mutations may be introduced singly into Fc giving rise to more than one hundred FcRn binding partners distinct from native Fc. Additionally, combinations of two, three, or more of these individual mutations may be introduced together, giving rise to hundreds more FcRn binding partners. Moreover, one of the FcRn binding partners of a construct of the invention may be mutated and the other FcRn binding partner not mutated at all, or they both may be mutated but with different mutations. Any of the mutations described herein, including N297A, may be used to modify Fc, regardless of the biologically active molecule (e.g., EPO, IFN, Factor VII, Factor IX, T20).
  • Certain of the above mutations may confer new functionality upon the FcRn binding partner. For example, one embodiment incorporates N297A, removing a highly conserved N-glycosylation site. The effect of this mutation is to reduce immunogenicity, thereby enhancing circulating half life of the FcRn binding partner, and to render the FcRn binding partner incapable of binding to FcγRI, FcγRIIA, FcγRIIB, and FcγRIIIA, without compromising affinity for FcRn (Routledge et al. 1995, Transplantation 60:847; Friend et al. 1999, Transplantation 68:1632; Shields et al. 1995, J. Biol. Chem. 276:6591). As a further example of new functionality arising from mutations described above affinity for FcRn may be increased beyond that of wild type in some instances. This increased affinity may reflect an increased “on” rate, a decreased “off” rate or both an increased “on” rate and a decreased “off” rate. Mutations believed to impart an increased affinity for FcRn include T256A, T307A, E380A, and N434A (Shields et al. 2001, J. Biol. Chem. 276:6591).
  • Additionally, at least three human Fc gamma receptors appear to recognize a binding site on IgG within the lower hinge region, generally amino acids 234-237. Therefore, another example of new functionality and potential decreased immunogenicity may arise from mutations of this region, as for example by replacing amino acids 233-236 of human IgG1 “ELLG” to the corresponding sequence from IgG2 “PVA” (with one amino acid deletion). It has been shown that FcγRI, FcγRII, and FcγRIII, which mediate various effector functions will not bind to IgG1 when such mutations have been introduced. Ward and Ghetie 1995, Therapeutic Immunology 2:77 and Armour et al. 1999, Eur. J. Immunol. 29:2613.
  • In one embodiment, the FcRn binding partner is a polypeptide including the sequence PKNSSMISNTP (SEQ ID NO: 12) and optionally further including a sequence selected from HQSLGTQ (SEQ ID NO: 13), HQNLSDGK (SEQ ID NO: 14), HQNISDGK (SEQ ID NO: 24), or VISSHLGQ (SEQ ID NO: 25) (U.S. Pat. No. 5,739,277).
  • Two FcRn receptors can bind a single Fc molecule. Crystallographic data suggest that each FcRn molecule binds a single polypeptide of the Fc homodimer. In one embodiment, linking the FcRn binding partner, e.g., an Fc fragment of an IgG, to a biologically active molecule provides a means of delivering the biologically active molecule orally, buccally, sublingually, rectally, vaginally, as an aerosol administered nasally or via a pulmonary route, or via an ocular route. In another embodiment, the chimeric protein can be administered invasively, e.g., subcutaneously, intravenously.
  • The constant region domains or portions thereof making up an Fc moiety of a polypeptide of the invention may be derived from different immunoglobulin molecules. For example, a polypeptide of the invention may comprise a CH2 domain or portion thereof derived from an IgG1 molecule and a CH3 region or portion thereof derived from an IgG3 molecule. In another example, a polypeptide can comprise an Fc moiety comprising a hinge domain derived, in part, from an IgG1 molecule and, in part, from an IgG3 molecule. As set forth herein, it will be understood by one of ordinary skill in the art that an Fc moiety may be altered such that it varies in amino acid sequence from a naturally occurring antibody molecule.
  • In another embodiment, a polypeptide of the invention comprises an scFc region comprising one or more truncated Fc moieties that are nonetheless sufficient to confer Fc receptor (FcR) binding properties to the Fc region. For example, the portion of an Fc domain that binds to FcRn (i.e., the FcRn binding portion) comprises from about amino acids 282-438 of IgG1, EU numbering (with the primary contact sites being amino acids 248, 250-257, 272, 285, 288, 290-291, 308-311, and 314 of the CH2 domain and amino acid residues 385-387, 428, and 433-436 of the CH3 domain. Thus, an Fc moiety of a polypeptide of the invention may comprise or consist of an FcRn binding portion. FcRn binding portions may be derived from heavy chains of any isotype, including IgG1, IgG2, IgG3 and IgG4. In one embodiment, an FcRn binding portion from an antibody of the human isotype IgG1 is used. In another embodiment, an FcRn binding portion from an antibody of the human isotype IgG4 is used.
  • In one embodiment, a polypeptide of the invention lacks one or more constant region domains of a complete Fc region, i.e., they are partially or entirely deleted. In a certain embodiments polypeptides of the invention will lack an entire CH2 domain (ΔCH2 constructs). Those skilled in the art will appreciate that such constructs may be preferred due to the regulatory properties of the CH2 domain on the catabolic rate of the antibody. In certain embodiments, polypeptides of the invention comprise CH2 domain-deleted Fc regions derived from a vector (e.g., from IDEC Pharmaceuticals, San Diego) encoding an IgG1 human constant region domain (see, e.g., WO 02/060955A2 and WO02/096948A2). This exemplary vector is engineered to delete the CH2 domain and provide a synthetic vector expressing a domain-deleted IgG1 constant region. It will be noted that these exemplary constructs are preferably engineered to fuse a binding CH3 domain directly to a hinge region of the respective Fc domain.
  • In other constructs it may be desirable to provide a spacer moiety between one or more constituent Fc moieties. For example, a spacer moiety may be placed between a hinge region and a CH2 domain and/or between a CH2 and a CH3 domains. For example, compatible constructs could be expressed wherein the CH2 domain has been deleted and the remaining CH3 domain (synthetic or unsynthetic) is joined to the hinge region with a 5-20 amino acid spacer moiety. Such a spacer moiety may be added, for instance, to ensure that the regulatory elements of the constant region domain remain free and accessible or that the hinge region remains flexible. Preferably, any linker peptide compatible with the instant invention will be relatively non-immunogenic and not prevent proper folding of the scFc region.
  • In certain embodiments, the polypeptides of the invention may comprise a dimeric Fc region comprising Fc moieties of the same, or substantially the same, sequence composition (herein termed a “homodimeric Fc region”). In other embodiments, the polypeptides of the invention may comprise a dimeric Fc region comprising at least two Fc moieties which are of different sequence composition (i.e., herein termed a “heterodimeric Fc region”). In one exemplary embodiment, the heterodimeric Fc region comprises an amino acid substitution in a first Fc moiety (e.g., an amino acid substitution of Asparagine at EU position 297), but not in a second Fc moiety.
  • In certain embodiments, the Fc region is hemi-glycosylated. For example, the heteromeric scFc region may comprise a first, glycosylated, Fc moiety (e.g., a glycosylated CH2 region) and a second, aglycosylated, Fc moiety (e.g., an aglycosylated CH2 region), wherein a linker is interposed between the glycosylated and aglycosylated Fc moieties. In other embodiments, the Fc region is fully glycosylated, i.e., all of the Fc moieties are glycosylated. In still further embodiments, the Fc region may be aglycosylated, i.e., none of the Fc moieties are glycosylated.
  • In certain embodiments, an Fc moiety employed in a polypeptide of the invention is altered, e.g., by amino acid mutation (e.g., addition, deletion, or substitution). For example, in one embodiment, an Fc moiety has at least one amino acid substitution as compared to the wild-type Fc from which the Fc moiety is derived. For example, wherein the Fc moiety is derived from a human IgG1 antibody, a variant comprises at least one amino acid mutation (e.g., substitution) as compared to a wild type amino acid at the corresponding position of the human IgG1 Fc region.
  • The amino acid substitution(s) of an Fc variant may be located at a position within the Fc moiety referred to as corresponding to the position number that that residue would be given in an Fc region in an antibody (as set forth using the EU numbering convention). One of skill in the art can readily generate alignments to determine what the EU number corresponding to a position in an Fc moiety would be.
  • In one embodiment, the Fc variant comprises a substitution at an amino acid position located in a hinge domain or portion thereof. In another embodiment, the Fc variant comprises a substitution at an amino acid position located in a CH2 domain or portion thereof. In another embodiment, the Fc variant comprises a substitution at an amino acid position located in a CH3 domain or portion thereof. In another embodiment, the Fc variant comprises a substitution at an amino acid position located in a CH4 domain or portion thereof.
  • In certain embodiments, the polypeptides of the invention comprise an Fc variant comprising more than one amino acid substitution. The polypeptides of the invention may comprise, for example, 2, 3, 4, 5, 6, 7, 8, 9, 10 or more amino acid substitutions. Preferably, the amino acid substitutions are spatially positioned from each other by an interval of at least 1 amino acid position or more, for example, at least 2, 3, 4, 5, 6, 7, 8, 9, or 10 amino acid positions or more. More preferably, the engineered amino acids are spatially positioned apart from each other by an interval of at least 5, 10, 15, 20, or 25 amino acid positions or more.
  • In certain embodiments, the Fc variant confers a change in at least one effector function imparted by an Fc region comprising said wild-type Fc domain (e.g., an improvement or reduction in the ability of the Fc region to bind to Fc receptors (e.g. FcγRI, FcγRII, or FcγRIII) or complement proteins (e.g. Clq), or to trigger antibody-dependent cytotoxicity (ADCC), phagocytosis, or complement-dependent cytotoxicity (CDCC)). In other embodiments, the Fc variant provides an engineered cysteine residue
  • The polypeptides of the invention may employ art-recognized Fc variants which is known to impart a change (e.g., an enhancement or reduction) in effector function and/or FcR or FcRn binding. Specifically, a binding molecule of the invention may include, for example, a change (e.g., a substitution) at one or more of the amino acid positions disclosed in International PCT Publications WO88/07089A1, WO96/14339A1, WO98/05787A1, WO98/23289A1, WO99/51642A1, WO99/58572A1, WO00/09560A2, WO00/32767A1, WO00/42072A2, WO02/44215A2, WO02/060919A2, WO03/074569A2, WO04/016750A2, WO04/029207A2, WO04/035752A2, WO04/063351A2, WO04/074455A2, WO04/099249A2, WO05/040217A2, WO04/044859, WO05/070963A1, WO05/077981A2, WO05/092925A2, WO05/123780A2, WO06/019447A1, WO06/047350A2, and WO06/085967A2; US Patent Publication Nos. US2007/0231329, US2007/0231329, US2007/0237765, US2007/0237766, US2007/0237767, US2007/0243188, US20070248603, US20070286859, US20080057056; or U.S. Pat. Nos. 5,648,260; 5,739,277; 5,834,250; 5,869,046; 6,096,871; 6,121,022; 6,194,551; 6,242,195; 6,277,375; 6,528,624; 6,538,124; 6,737,056; 6,821,505; 6,998,253; 7,083,784; and 7,317,091, each of which is incorporated by reference herein. In one embodiment, the specific change (e.g., the specific substitution of one or more amino acids disclosed in the art) may be made at one or more of the disclosed amino acid positions. In another embodiment, a different change at one or more of the disclosed amino acid positions (e.g., the different substitution of one or more amino acid position disclosed in the art) may be made.
  • In certain embodiments, a polypeptide of the invention comprises an amino acid substitution to an Fc moiety which alters the antigen-independent effector functions of the antibody, in particular the circulating half-life of the antibody.
  • Such polypeptides exhibit either increased or decreased binding to FcRn when compared to polypeptides lacking these substitutions and, therefore, have an increased or decreased half-life in serum, respectively. Fc variants with improved affinity for FcRn are anticipated to have longer serum half-lives, and such molecules have useful applications in methods of treating mammals where long half-life of the administered polypeptide is desired, e.g., to treat a chronic disease or disorder (see, e.g, U.S. Pat. Nos. 7,348,004, 7,404,956, and 7,862,820). In contrast, Fc variants with decreased FcRn binding affinity are expected to have shorter half-lives, and such molecules are also useful, for example, for administration to a mammal where a shortened circulation time may be advantageous, e.g. for in vivo diagnostic imaging or in situations where the starting polypeptide has toxic side effects when present in the circulation for prolonged periods. Fc variants with decreased FcRn binding affinity are also less likely to cross the placenta and, thus, are also useful in the treatment of diseases or disorders in pregnant women. In addition, other applications in which reduced FcRn binding affinity may be desired include those applications in which localization the brain, kidney, and/or liver is desired. In one exemplary embodiment, the polypeptides of the invention exhibit reduced transport across the epithelium of kidney glomeruli from the vasculature. In another embodiment, the polypeptides of the invention exhibit reduced transport across the blood brain barrier (BBB) from the brain, into the vascular space. In one embodiment, a polypeptide with altered FcRn binding comprises at least one Fc moiety (e.g, one or two Fc moieties) having one or more amino acid substitutions within the “FcRn binding loop” of an Fc moiety. The FcRn binding loop is comprised of amino acid residues 280-299 (according to EU numbering) of a wild-type, full-length, Fc moiety. In other embodiments, a polypeptide of the invention having altered FcRn binding affinity comprises at least one Fc moiety (e.g, one or two Fc moieties) having one or more amino acid substitutions within the 15 Å FcRn “contact zone.” As used herein, the term 15 Å FcRn “contact zone” includes residues at the following positions of a wild-type, full-length Fc moiety: 243-261, 275-280, 282-293, 302-319, 336-348, 367, 369, 372-389, 391, 393, 408, 424, 425-440 (EU numbering). In preferred embodiments, a polypeptide of the invention having altered FcRn binding affinity comprises at least one Fc moiety (e.g, one or two Fc moieties) having one or more amino acid substitutions at an amino acid position corresponding to any one of the following EU positions: 256, 277-281, 283-288, 303-309, 313, 338, 342, 376, 381, 384, 385, 387, 434 (e.g., N434A or N434K), and 438. Exemplary amino acid substitutions which altered FcRn binding activity are disclosed in International PCT Publication No. WO05/047327 which is incorporated by reference herein.
  • A polypeptide of the invention may also comprise an art recognized amino acid substitution which alters the glycosylation of the polypeptide. For example, the scFc region of the binding polypeptide may comprise an Fc moiety having a mutation leading to reduced glycosylation (e.g., N- or O-linked glycosylation) or may comprise an altered glycoform of the wild-type Fc moiety (e.g., a low fucose or fucose-free glycan).
  • In other embodiments, a polypeptide of the invention comprises at least one Fc moiety having engineered cysteine residue or analog thereof which is located at the solvent-exposed surface. Preferably the engineered cysteine residue or analog thereof does not interfere with an effector function conferred by the scFc region. More preferably, the alteration does not interfere with the ability of the scFc region to bind to Fc receptors (e.g. FcγRI, FcγRII, or FcγRIII) or complement proteins (e.g. Clq), or to trigger immune effector function (e.g., antibody-dependent cytotoxicity (ADCC), phagocytosis, or complement-dependent cytotoxicity (CDCC)).
  • In one embodiment, an unprocessed polypeptide of the invention may comprise a genetically fused Fc region (i.e., scFc region) having two or more of its constituent Fc moieties independently selected from the Fc moieties described herein. In one embodiment, the Fc moieties of a dimeric Fc region are the same. In another embodiment, at least two of the Fc moieties are different. For example, the Fc moieties of the polypeptides of the invention comprise the same number of amino acid residues or they may differ in length by one or more amino acid residues (e.g., by about 5 amino acid residues (e.g., 1, 2, 3, 4, or 5 amino acid residues), about 10 residues, about 15 residues, about 20 residues, about 30 residues, about 40 residues, or about 50 residues). In yet other embodiments, the Fc moieties of the polypeptides of the invention may differ in sequence at one or more amino acid positions. For example, at least two of the Fc moieties may differ at about 5 amino acid positions (e.g., 1, 2, 3, 4, or 5 amino acid positions), about 10 positions, about 15 positions, about 20 positions, about 30 positions, about 40 positions, or about 50 positions).
  • VI. Polypeptide Linkers
  • As used herein, the term “polypeptide linkers” refers to a peptide or polypeptide sequence (e.g., a synthetic peptide or polypeptide sequence) which connects two domains in a linear amino acid sequence of a polypeptide chain. The polypeptides of invention are encoded by nucleic acid molecules that encode polypeptide linkers which either directly or indirectly connect the two Fc moieties which make up the construct. These linkers are referred to herein as “scFc linkers”. If the scFc linker connects two Fc moieties contiguously in the linear polypeptide sequence, it is a “direct” linkage. In contract, the scFc linkers may link the first Fc moiety to a binding moiety which is, in turn, linked to the second Fc moiety, thereby forming an indirect linkage. These scFc linkers (L) result in the formation of a single chain genetic construct. However, in one embodiment, the scFc polypeptides also comprise enzymatic cleavage sites which result in the scFc linker being cleavable (an cscFc linker) and, in one embodiment, substantially excised (e.g., during processing by a cell). Thus, the processed molecule is a dimeric molecule comprising at least two amino acid chains and substantially lacking extraneous linker amino acid sequences. In some embodiments, all or substantially all of the linker is excised, while in some embodiments, a portion of the cleavage site may remain, e.g., four arginines of the RRRR cleavage site.
  • In another embodiment, another type of polypeptide linker, herein referred to as a “spacer” may be used to connect different moieties, e.g., a clotting factor or a targeting moiety to an Fc moiety. This type of polypeptide linker may provide flexibility to the polypeptide molecule. Spacers are not typically cleaved, however such cleavage may be desirable. Exemplary positions of spacers are shown in the accompanying drawings. Spacers can be located between the clotting factors, targeting moieties, and/or scaffolds, e.g., at the N or C terminus of these moieties. In one embodiment, these linkers are not removed during processing.
  • A third type of linker which may be present in a chimeric clotting factor of the invention is a cleavable linker which comprises a cleavage site (e.g., a factor XIa, Xa, or thrombin cleavage site) and which may include additional spacer linkers on either the N terminal of C terminal or both sides of the cleavage site. These cleavable linkers when incorporated into a clotting factor result in a chimeric molecule having a heterologous cleavage site. Exemplary locations for such sites are shown in the accompanying drawings and include, e.g., adjacent to targeting moieties, In another embodiment, such linkers may be adjacent to a clotting factor or portion thereof. For example, in one embodiment, a cleavable linker may be fused to the N terminus of the heavy chain of a clotting factor to make an activatable form of the clotting factor. In such cases, the cleavable linker may include additional spacer linkers at the N terminus of the cleavage site, but require direct fusion at the C-terminus of the cleavage site to the amino terminus of the heavy chain of the clotting factor.
  • In one embodiment, an unprocessed polypeptide of the instant invention comprises two or more Fc domains or moieties linked via a cscFc linker to form an Fc region comprised in a single polypeptide chain. The cscFc linker is flanked by at least one enzymatic cleavage site, e.g., a site for processing by an intracellular enzyme. Cleavage of the polypeptide at the at least one enzymatic cleavage site results in a polypeptide which comprises at least two polypeptide chains. In one embodiment, an cscFc linker links F1 or F2 to, e.g., a clotting factor, optionally via a cleavage site.
  • As is set forth above, other polypeptide linkers may optionally be used in a construct of the invention, e.g., to connect a clotting factor or targeting moiety to an Fc moiety. One type of pollypeptide linker is referred to here as spacers. Some exemplary locations of spacers that can be used in connection with the invention include, e.g., polypeptides comprising GlySer amino acids such as those set forth in the accompanying figures and described in more detail below. In one embodiment, a spacer may be adjacent to one or more moieties each independently selected from clotting factor, scaffold moiety, e.g., Fc, cleavage site, and a targeting moiety.
  • In one embodiment, the polypeptide linker is synthetic, i.e., non-naturally occurring. In one embodiment, a polypeptide linker includes peptides (or polypeptides) (which may or may not be naturally occurring) which comprise an amino acid sequence that links or genetically fuses a first linear sequence of amino acids to a second linear sequence of amino acids to which it is not naturally linked or genetically fused in nature. For example, in one embodiment the polypeptide linker may comprise non-naturally occurring polypeptides which are modified forms of naturally occurring polypeptides (e.g., comprising a mutation such as an addition, substitution or deletion). In another embodiment, the polypeptide linker may comprise non-naturally occurring amino acids. In another embodiment, the polypeptide linker may comprise naturally occurring amino acids occurring in a linear sequence that does not occur in nature. In still another embodiment, the polypeptide linker may comprise a naturally occurring polypeptide sequence.
  • For example, in certain embodiments, a polypeptide linker can be used to fuse identical Fc moieties, thereby forming a homomeric scFc region. In other embodiments, a polypeptide linker can be used to fuse different Fc moieties (e.g. a wild-type Fc moiety and an Fc moiety variant), thereby forming a heteromeric scFc region.
  • In another embodiment, a polypeptide linker comprises or consists of a gly-ser linker.
  • In one embodiment, an scFc or cscFc linker comprises at least a portion of an immunoglobulin hinge and a gly-ser linker. As used herein, the term “gly-ser linker” refers to a peptide that consists of glycine and serine residues. An exemplary gly/ser linker comprises an amino acid sequence of the formula (Gly4Ser)n (SEQ ID NO: 4), wherein is a positive integer (e.g., 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10). A preferred gly/ser linker is (Gly4Ser)2 (SEQ ID NO:29), (Gly4Ser)4 (SEQ ID NO:6), or (Gly4Ser)6. (SEQ ID NO: 5) Another exemplary gly-ser linker is GGGSSGGGSG (SEQ ID NO: 30). In certain embodiments, said gly-ser linker may be inserted between two other sequences of the polypeptide linker (e.g., any of the polypeptide linker sequences described herein). In other embodiments, a gly-ser linker is attached at one or both ends of another sequence of the polypeptide linker (e.g., any of the polypeptide linker sequences described herein). In yet other embodiments, two or more gly-ser linker are incorporated in series in a polypeptide linker. In one embodiment, a polypeptide linker of the invention comprises at least a portion of an upper hinge region (e.g., derived from an IgG1, IgG2, IgG3, or IgG4 molecule), at least a portion of a middle hinge region (e.g., derived from an IgG1, IgG2, IgG3, or IgG4 molecule) and a series of gly/ser amino acid residues (e.g., a gly/ser linker such as (Gly4Ser)n) (SEQ ID NO:4)).
  • Polypeptide linkers of the invention are at least one amino acid in length and can be of varying lengths. In one embodiment, a polypeptide linker of the invention is from about 1 to about 50 amino acids in length. As used in this context, the term “about” indicates+/−two amino acid residues. Since linker length must be a positive interger, the length of from about 1 to about 50 amino acids in length, means a length of from 1-3 to 48-52 amino acids in length. In another embodiment, a polypeptide linker of the invention is from about 10-20 amino acids in length. In another embodiment, a polypeptide linker of the invention is from about 15 to about 50 amino acids in length. In another embodiment, a polypeptide linker of the invention is from about 20 to about 45 amino acids in length. In another embodiment, a polypeptide linker of the invention is from about 15 to about 35 or about 20 to about 30 amino acids in length. In another embodiment, a polypeptide linker of the invention is from about 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 40, 50, or 60 amino acids in length. In one embodiment, a peptide linker of the invention is 20 or 30 amino acids in length.
  • Polypeptide linkers can be introduced into polypeptide sequences using techniques known in the art. Modifications can be confirmed by DNA sequence analysis. Plasmid DNA can be used to transform host cells for stable production of the polypeptides produced.
  • VIII. Enzymatic Cleavage Sites
  • In one embodiment, one or more enzymatic cleavage site(s) is linked to e.g., flanks or is adjacent to, a cscFc linker (L) of an unprocessed polypeptide of the invention. Such cleavage sites can be upstream or downstream of the cscFc liner or both. For example, in one embodiment of a construct encoding a polypeptide of the invention, a cleavage site is linked (e.g., directly or indirectly) to one or both ends of a cscFc linker (L).
  • For example, in one embodiment, a nucleic acid molecule of the invention specifies a polypeptide represented by the formula:

  • A-F1-P1-L-P2-B-F2  (I)
  • in linear sequence from the amino to carboxy terminus wherein A, if present, is a clotting factor or portion thereof, F1 is a first Fc moiety or domain, P1 is an enzymatic cleavage site, L is a cscFc linker, P2 is an enzymatic cleavage site B, if present, is a clotting factor or portion thereof, F2 is a second Fc moiety or domain and “-” represents a peptide bond. Formula (I) comprises at least an A or B and optionally both. A and B, if both present, can be the corresponding heavy and light chains of a clotting factor. Formula (I) comprises at least a P1 or P2 and optionally both. P1 and P2, if both present, can be the same or different. Formula (I) comprises at least a F1 and F2. F1 and F2, if both present, can be the same or different.
  • In another embodiment, a Factor XIa or Xa cleavage site may be incorporated into a construct of the invention, e.g., in a cleavable linker. Exemplary FXIa cleavage sites include, e.g, TQSFNDFTR and SVSQTSKLTR. Exemplary thrombin cleavage sites include, e.g, DFLAEGGGVR, TTKIKPR, LVPRG SEQ ID NO:35) and ALRPRVVGGA Other useful cleavage sites are known in the art.
  • In one embodiment, some portion of the linker may remain after cleavage at the at least one enzymatic cleavage site. In order to minimize the presence of extraneous amino acid sequences, two cleavage sites may be included in a polypeptide of the invention. In some embodiments, all or substantially all of the linker is excised, while in some embodiments, a portion of the cleavage site may remain, e.g., four arginines of the RRRR cleavage site.
  • Preparation of Polypeptides
  • A variety of methods are available for recombinantly producing a chimeric clotting factor of the invention. In one embodiment, the invention relates to a nucleic acid construct comprising a nucleic acid sequence encoding the chimeric proteins of the invention. It will be understood that because of the degeneracy of the code, a variety of nucleic acid sequences will encode the amino acid sequence of the polypeptide. The desired polynucleotide can be produced by de novo solid-phase DNA synthesis or by PCR mutagenesis of an earlier prepared polynucleotide.
  • Oligonucleotide-mediated mutagenesis is one method for preparing a substitution, in-frame insertion, or alteration (e.g., altered codon) to introduce a codon encoding an amino acid substitution (e.g., into an Fc variant moiety). For example, the starting polypeptide DNA is altered by hybridizing an oligonucleotide encoding the desired mutation to a single-stranded DNA template. After hybridization, a DNA polymerase is used to synthesize an entire second complementary strand of the template that incorporates the oligonucleotide primer. In one embodiment, genetic engineering, e.g., primer-based PCR mutagenesis, is sufficient to incorporate an alteration, as defined herein, for producing a polynucleotide encoding a polypeptide of the invention.
  • For recombinant production, a polynucleotide sequence encoding the chimeric protein is inserted into an appropriate expression vehicle, i. e., a vector which contains the necessary elements for the transcription and translation of the inserted coding sequence, or in the case of an RNA viral vector, the necessary elements for replication and translation.
  • The nucleic acid encoding the chimeric protein is inserted into the vector in proper reading frame. The expression vector is then transfected into a suitable target cell which will express the polypeptide. Transfection techniques known in the art include, but are not limited to, calcium phosphate precipitation (Wigler et al. 1978, Cell 14: 725) and electroporation (Neumann et al. 1982, EMBO, J. 1: 841). A variety of host-expression vector systems may be utilized to express the chimeric proteins described herein in eukaryotic cells. In one embodiment, the eukaryotic cell is an animal cell, including mammalian cells (e. g. 293 cells, PerC6, CHO, BHK, Cos, HeLa cells). When the chimeric protein is expressed in a eukaryotic cell the DNA encoding the chimeric protein may also code for a signal sequence that will permit the chimeric protein to be secreted. One skilled in the art will understand that while the protein is translated the signal sequence is cleaved by the cell to form the mature chimeric protein. Various signal sequences are known in the art e. g., native factor V11 signal sequence, native factor IX signal sequence and the mouse IgK light chain signal sequence. Alternatively, where a signal sequence is not included the chimeric protein can be recovered by lysing the cells.
  • The chimeric protein of the invention can be synthesized in a transgenic animal, such as a rodent, goat, sheep, pig, or cow. The term “transgenic animals” refers to non-human animals that have incorporated a foreign gene into their genome. Because this gene is present in germline tissues, it is passed from parent to offspring. Exogenous genes are introduced into single-celled embryos (Brinster et al. 1985, Proc. Natl. Acad. Sci. USA 82: 4438). Methods of producing transgenic animals are known in the art. including transgenics that produce immunoglobulin molecules (Wagner et al. 1981, Proc. Natl. Acad. Sci. USA 78: 6376; McKnight et al. 1983, Cell 34: 335; Brinster et al. 1983, Nature 306: 332; Ritchie et al. 1984, Nature 312: 517; Baldassarre et al. 2003, Theriogenology 59: 831; Robl et al. 2003, Theriogenology 59: 107; Malassagne et al. 2003, Xenotransplantation 10 (3): 267).
  • The expression vectors can encode for tags that permit for easy purification or identification of the recombinantly produced protein. Examples include, but are not limited to, vector pUR278 (Ruther et al. 1983, EMBO J. 2: 1791) in which the chimeric protein described herein coding sequence may be ligated into the vector in frame with the lac z coding region so that a hybrid protein is produced; pGEX vectors may be used to express proteins with a glutathione S-transferase (GST) tag. These proteins are usually soluble and can easily be purified from cells by adsorption to glutathione-agarose beads followed by elution in the presence of free glutathione. The vectors include cleavage sites (e. g. PreCission Protease (Pharmacia, Peapack, N.J.)) for easy removal of the tag after purification.
  • For the purposes of this invention, numerous expression vector systems may be employed. These expression vectors are typically replicable in the host organisms either as episomes or as an integral part of the host chromosomal DNA. Expression vectors may include expression control sequences including, but not limited to, promoters (e.g., naturally-associated or heterologous promoters), enhancers, signal sequences, splice signals, enhancer elements, and transcription termination sequences. Preferably, the expression control sequences are eukaryotic promoter systems in vectors capable of transforming or transfecting eukaryotic host cells. Expression vectors may also utilize DNA elements which are derived from animal viruses such as bovine papilloma virus, polyoma virus, adenovirus, vaccinia virus, baculovirus, retroviruses (RSV, MMTV or MOMLV), cytomegalovirus (CMV), or SV40 virus. Others involve the use of polycistronic systems with internal ribosome binding sites.
  • Commonly, expression vectors contain selection markers (e.g., ampicillin-resistance, hygromycin-resistance, tetracycline resistance or neomycin resistance) to permit detection of those cells transformed with the desired DNA sequences (see, e.g., Itakura et al., U.S. Pat. No. 4,704,362). Cells which have integrated the DNA into their chromosomes may be selected by introducing one or more markers which allow selection of transfected host cells. The marker may provide for prototrophy to an auxotrophic host, biocide resistance (e.g., antibiotics) or resistance to heavy metals such as copper. The selectable marker gene can either be directly linked to the DNA sequences to be expressed, or introduced into the same cell by cotransformation.
  • A preferred expression vector is NEOSPLA (U.S. Pat. No. 6,159,730). This vector contains the cytomegalovirus promoter/enhancer, the mouse beta globin major promoter, the SV40 origin of replication, the bovine growth hormone polyadenylation sequence, neomycin phosphotransferase exon 1 and exon 2, the dihydrofolate reductase gene and leader sequence. This vector has been found to result in very high level expression of antibodies upon incorporation of variable and constant region genes, transfection in cells, followed by selection in G418 containing medium and methotrexate amplification. Vector systems are also taught in U.S. Pat. Nos. 5,736,137 and 5,658,570, each of which is incorporated by reference in its entirety herein. This system provides for high expression levels, e.g., >30 pg/cell/day. Other exemplary vector systems are disclosed e.g., in U.S. Pat. No. 6,413,777.
  • In other embodiments the polypeptides of the invention of the instant invention may be expressed using polycistronic constructs. In these expression systems, multiple gene products of interest such as multiple polypeptides of multimer binding protein may be produced from a single polycistronic construct. These systems advantageously use an internal ribosome entry site (IRES) to provide relatively high levels of polypeptides of the invention in eukaryotic host cells. Compatible IRES sequences are disclosed in U.S. Pat. No. 6,193,980 which is also incorporated herein. Those skilled in the art will appreciate that such expression systems may be used to effectively produce the full range of polypeptides disclosed in the instant application.
  • More generally, once the vector or DNA sequence encoding a polypeptide has been prepared, the expression vector may be introduced into an appropriate host cell. That is, the host cells may be transformed. Introduction of the plasmid into the host cell can be accomplished by various techniques well known to those of skill in the art. These include, but are not limited to, transfection (including electrophoresis and electroporation), protoplast fusion, calcium phosphate precipitation, cell fusion with enveloped DNA, microinjection, and infection with intact virus. See, Ridgway, A. A. G. “Mammalian Expression Vectors” Chapter 24.2, pp. 470-472 Vectors, Rodriguez and Denhardt, Eds. (Butterworths, Boston, Mass. 1988). Most preferably, plasmid introduction into the host is via electroporation. The transformed cells are grown under conditions appropriate to the production of the light chains and heavy chains, and assayed for heavy and/or light chain protein synthesis. Exemplary assay techniques include enzyme-linked immunosorbent assay (ELISA), radioimmunoassay (RIA), or flourescence-activated cell sorter analysis (FACS), immunohistochemistry and the like.
  • As used herein, the term “transformation” shall be used in a broad sense to refer to the introduction of DNA into a recipient host cell that changes the genotype and consequently results in a change in the recipient cell.
  • Along those same lines, “host cells” refers to cells that have been transformed with vectors constructed using recombinant DNA techniques and encoding at least one heterologous gene. In descriptions of processes for isolation of polypeptides from recombinant hosts, the terms “cell” and “cell culture” are used interchangeably to denote the source of polypeptide unless it is clearly specified otherwise. In other words, recovery of polypeptide from the “cells” may mean either from spun down whole cells, or from the cell culture containing both the medium and the suspended cells.
  • The host cell line used for protein expression is most preferably of mammalian origin; those skilled in the art are credited with ability to preferentially determine particular host cell lines which are best suited for the desired gene product to be expressed therein. Exemplary host cell lines include, but are not limited to, DG44 and DUXB11 (Chinese Hamster Ovary lines, DHFR minus), HELA (human cervical carcinoma), CVI (monkey kidney line), COS (a derivative of CVI with SV40 T antigen), R1610 (Chinese hamster fibroblast) BALBC/3T3 (mouse fibroblast), HAK (hamster kidney line), SP2/0 (mouse myeloma), P3.times.63-Ag3.653 (mouse myeloma), BFA-1c1BPT (bovine endothelial cells), RAJI (human lymphocyte), PerC6, and 293 (human kidney). Host cell lines are typically available from commercial services, the American Tissue Culture Collection or from published literature.
  • In one embodiment, a host cell endogenously expresses an enzyme (or the enzymes) necessary to cleave an scFc linker (e.g., if such a linker is present and contains intracellular processing site(s)) during processing to form the mature polyptide. During this processing, the scFc linker may be substantially removed to reduce the presence of extraneous amino acids. In another embodiment of the invention, a host cell is transformed to express one or more enzymes which are exogenous to the cell such that processing of an scFc linker occurs or is improved.
  • In one embodiment an enzyme which may be endogenously or exogenously expressed by a cell is a member of the furin family of enzymes. Complete cDNA and amino acid sequences of human furin (i.e., PACE) were published in 1990. Van den Ouweland A M et al. (1990) Nucleic Acids Res. 18:664; Erratum in: Nucleic Acids Res. 18:1332 (1990).
  • U.S. Pat. No. 5,460,950, issued to Barr et al., describes recombinant PACE and the coexpression of PACE with a substrate precursor polypeptide of a heterologous protein to improve expression of active, mature heterologous protein.
  • U.S. Pat. No. 5,935,815, issued to van de Ven et al., likewise describes recombinant human furin (i.e., PACE) and the coexpression of furin with a substrate precursor polypeptide of a heterologous protein to improve expression of active, mature heterologous protein. Possible substrate precursors disclosed in this patent include a precursor of Factor IX. Other family members in the mammalian furin/subtilisin/Kex2p-like proprotein convertase (PC) family in addition to PACE are reported to include PC1/PC3, PC2, PC4, PC5/6 (hereinafter referred to simply as PC5), PACE4, and LPC/PC7/PC8/SPC7. While these various members share certain conserved overall structural features, they differ in their tissue distribution, subcellular localization, cleavage specificities, and preferred substrates. For a review, see Nakayama K (1997) Biochem J. 327:625-35. Similar to PACE, these proprotein convertases generally include, beginning from the amino terminus, a signal peptide, a propeptide (that may be autocatalytically cleaved), a subtilisin-like catalytic domain characterized by Asp, His, Ser, and Asn/Asp residues, and a Homo B domain that is also essential for catalytic activity and characterized by an Arg-Gly-Asp (RGD) sequence. PACE, PACE4, and PC5 also include a Cys-rich domain, the function of which is unknown. In addition, PC5 has isoforms with and without a transmembrane domain; these different isoforms are known as PCSB and PCSA, respectively. Comparison between the amino acid sequence of the catalytic domain of PACE and the amino acid sequences of the catalytic domains of other members of this family of proprotein convertases reveals the following degrees of identity: 70 percent for PC4; 65 percent for PACE4 and PC5; 61 percent for PC1/PC3; 54 percent for PC2; and 51 percent for LPC/PC7/PC8/SPC7. Nakayama K (1997) Biochem J. 327:625-35.
  • PACE and PACE4 have been reported to have partially overlapping but distinct substrates. In particular, PACE4, in striking contrast to PACE, has been reported to be incapable of processing the precursor polypeptide of FIX. Wasley L C et al. (1993) J Biol Chem. 268:8458-65; Rehemtulla A et al. (1993) Biochemistry. 32:11586-90.
  • U.S. Pat. No. 5,840,529, issued to Seidah et al., discloses nucleotide and amino acid sequences for human PC7 and the notable ability of PC7, as compared to other PC family members, to cleave HIV gp160 to gp120 and gp41.
  • Nucleotide and amino acid sequences of rodent PC5 were first described as PC5 by Lusson J et al. (1993) Proc Natl Acad Sci USA 90:6691-5 and as PC6 by Nakagawa T et al. (1993) J Biochem (Tokyo) 113:132-5. U.S. Pat. No. 6,380,171, issued to Day et al., discloses nucleotide and amino acid sequences for human PCSA, the isoform without the transmembrane domain. The sequences of these enzymes and method of cloning them are known in the art.
  • Genes encoding the polypeptides of the invention can also be expressed in non-mammalian cells such as bacteria or yeast or plant cells. In this regard it will be appreciated that various unicellular non-mammalian microorganisms such as bacteria can also be transformed; i.e., those capable of being grown in cultures or fermentation. Bacteria, which are susceptible to transformation, include members of the enterobacteriaceae, such as strains of Escherichia coli or Salmonella; Bacillaceae, such as Bacillus subtilis; Pneumococcus; Streptococcus, and Haemophilus influenzae. It will further be appreciated that, when expressed in bacteria, the polypeptides typically become part of inclusion bodies. The polypeptides must be isolated, purified and then assembled into functional molecules.
  • In addition to prokaryates, eukaryotic microbes may also be used. Saccharomyces cerevisiae, or common baker's yeast, is the most commonly used among eukaryotic microorganisms although a number of other strains are commonly available. For expression in Saccharomyces, the plasmid YRp7, for example, (Stinchcomb et al., Nature, 282:39 (1979); Kingsman et al., Gene, 7:141 (1979); Tschemper et al., Gene, 10:157 (1980)) is commonly used. This plasmid already contains the TRP1 gene which provides a selection marker for a mutant strain of yeast lacking the ability to grow in tryptophan, for example ATCC No. 44076 or PEP4-1 (Jones, Genetics, 85:12 (1977)). The presence of the trpl lesion as a characteristic of the yeast host cell genome then provides an effective environment for detecting transformation by growth in the absence of tryptophan. Other yeast hosts such Pichia may also be employed. Yeast expression vectors having expression control sequences (e.g., promoters), an origin of replication, termination sequences and the like as desired. Typical promoters include 3-phosphoglycerate kinase and other glycolytic enzymes. Inducible yeast promoters include, among others, promoters from alcohol dehydrogenase, isocytochrome C, and enzymes responsible for methanol, maltose, and galactose utilization.
  • Alternatively, polypeptide-coding nucleotide sequences can be incorporated in transgenes for introduction into the genome of a transgenic animal and subsequent expression in the milk of the transgenic animal (see, e.g., Deboer et al., U.S. Pat. No. 5,741,957, Rosen, U.S. Pat. No. 5,304,489, and Meade et al., U.S. Pat. No. 5,849,992). Suitable transgenes include coding sequences for polypeptides in operable linkage with a promoter and enhancer from a mammary gland specific gene, such as casein or beta lactoglobulin.
  • In vitro production allows scale-up to give large amounts of the desired polypeptides. Techniques for mammalian cell cultivation under tissue culture conditions are known in the art and include homogeneous suspension culture, e.g. in an airlift reactor or in a continuous stirrer reactor, or immobilized or entrapped cell culture, e.g. in hollow fibers, microcapsules, on agarose microbeads or ceramic cartridges. If necessary and/or desired, the solutions of polypeptides can be purified by the customary chromatography methods, for example gel filtration, ion-exchange chromatography, chromatography over DEAE-cellulose or (immuno-) affinity chromatography, e.g., after preferential biosynthesis of a synthetic hinge region polypeptide or prior to or subsequent to the HIC chromatography step described herein. An affinity tag sequence (e.g. a His(6) tag) may optionally be attached or included within the polypeptide sequence to facilitate downstream purification.
  • In one embodiment, a host cell of the invention comprises a genetic construct encoding a polypeptide comprising an scFc scaffold and one or more enzymes that can process a cscFc linker. The construct and the enzyme(s) can be expressed using a single vector or two vectors.
  • In one embodiment, the invention pertains to nucleic acid molecules which encode a polypeptide of the invention. In one embodiment, the nucleic acid molecule encodes a chimeric clotting factor selected from the group consisting of FVII, FIX and FX and which comprises a targeting moiety which binds to platelets and optionally a spacer moiety between the clotting factor and the targeting moiety.
  • In another embodiment, the invention pertains to a nucleic acid molecule encoding a polypeptide comprising FVII, which FVII which comprises a heterologous enzymatic cleavage site activatable by a component of the clotting cascade.
  • Once expressed, the chimeric clotting factor can be purified according to standard procedures of the art, including ammonium sulfate precipitation, affinity column chromatography, HPLC purification, gel electrophoresis and the like (see generally Scopes, Protein Purification (Springer-Verlag, N.Y., (1982)) and see specifically the methods used in the instant Examples. Substantially pure proteins of at least about 90 to 95% homogeneity are preferred, and 98 to 99% or more homogeneity most preferred, for pharmaceutical uses.
  • IX. Methods of Administering Polypeptides of the Invention
  • In another embodiment, the invention relates to a method of treating a subject with a hemostatic disorder comprising administering a therapeutically effective amount of an enhanced clotting factor of the Invention.
  • Compositions for administration to a subject include nucleic acid molecules which comprise a nucleotide sequence encoding a chimeric clotting factor of the invention (for gene therapy applications) as well as polypeptide molecules.
  • In one embodiment, an enhanced doting factor composition of the invention is administered in combination with at least one other agent that promotes hemostasis. Said other agent that promotes hemostasis Is a therapeutic with demonstrated clotting activity. As an example, but not as a limitation, hemostatic agent can include Factor V, Factor VII, Factor VIII, Factor IX, Factor X, Factor XI, Factor XII, Factor XIII, prothrombin, or fibrinogen or activated forms of any of the preceding. The clotting factor of hemostatic agent can also include anti-fibrinolytic drugs, e.g., epsilon-amino-caproic acid, tranexamic acid.
  • In one embodiment of the invention, the composition (e.g., the polypeptide or nucleic acid molecule encoding the polypeptide) is one in which the clotting factor is present in active form when administered to a subject. Such an activated molecule may be expressed by a cell in active form or may be activated in vitro prior to administration to a subject. In another embodiment, the composition is one in which the clotting factor is present in activatable form and the clotting factor is activated in vivo at the site of clotting after administration to a subject.
  • The chimeric clotting factor of the invention can be administered intravenously, subcutaneously, intramuscularly, or via any mucosal surface, e.g., orally, sublingually, buccally, sublingually, nasally, rectally, vaginally or via pulmonary route. The chimeric protein can be implanted within or linked to a biopolymer solid support that allows for the slow release of the chimeric protein to the desired site.
  • For oral administration, the pharmaceutical composition can take the form of tablets or capsules prepared by conventional means. The composition can also be prepared as a liquid for example a syrup or a suspension. The liquid can include suspending agents (e.g. sorbitol syrup, cellulose derivatives or hydrogenated edible fats), emulsifying agents (lecithin or acacia), non-aqueous vehicles (e.g. almond oil, oily esters, ethyl alcohol, or fractionated vegetable oils), and preservatives (e.g. methyl or propyl-p-hydroxybenzoates or sorbic acid). The preparations can also include flavoring, coloring and sweetening agents. Alternatively, the composition can be presented as a dry product for constitution with water or another suitable vehicle.
  • For buccal and sublingual administration the composition may take the form of tablets, lozenges or fast dissolving films according to conventional protocols.
  • For administration by inhalation, the compounds for use according to the present invention are conveniently delivered in the form of an aerosol spray from a pressurized pack or nebulizer (e.g. in PBS), with a suitable propellant, e.g., dichlorodifluoromethane, trichlorofluoromethane, dichlorotetrafluoromethane, carbon dioxide or other suitable gas. In the case of a pressurized aerosol the dosage unit can be determined by providing a valve to deliver a metered amount. Capsules and cartridges of, e.g., gelatin for use in an inhaler or insufflator can be formulated containing a powder mix of the compound and a suitable powder base such as lactose or starch.
  • In one embodiment, the route of administration of the polypeptides of the invention is parenteral. The term parenteral as used herein includes intravenous, intraarterial, intraperitoneal, intramuscular, subcutaneous, rectal or vaginal administration. The intravenous form of parenteral administration is preferred. While all these forms of administration are clearly contemplated as being within the scope of the invention, a form for administration would be a solution for injection, in particular for intravenous or intraarterial injection or drip. Usually, a suitable pharmaceutical composition for injection may comprise a buffer (e.g. acetate, phosphate or citrate buffer), a surfactant (e.g. polysorbate), optionally a stabilizer agent (e.g. human albumin), etc. However, in other methods compatible with the teachings herein, the polypeptides can be delivered directly to the site of the adverse cellular population thereby increasing the exposure of the diseased tissue to the therapeutic agent.
  • Preparations for parenteral administration include sterile aqueous or non-aqueous solutions, suspensions, and emulsions. Examples of non-aqueous solvents are propylene glycol, polyethylene glycol, vegetable oils such as olive oil, and injectable organic esters such as ethyl oleate. Aqueous carriers include water, alcoholic/aqueous solutions, emulsions or suspensions, including saline and buffered media. In the subject invention, pharmaceutically acceptable carriers include, but are not limited to, 0.01-0.1M and preferably 0.05M phosphate buffer or 0.8% saline. Other common parenteral vehicles include sodium phosphate solutions, Ringer's dextrose, dextrose and sodium chloride, lactated Ringer's, or fixed oils. Intravenous vehicles include fluid and nutrient replenishers, electrolyte replenishers, such as those based on Ringer's dextrose, and the like. Preservatives and other additives may also be present such as for example, antimicrobials, antioxidants, chelating agents, and inert gases and the like.
  • More particularly, pharmaceutical compositions suitable for injectable use include sterile aqueous solutions (where water soluble) or dispersions and sterile powders for the extemporaneous preparation of sterile injectable solutions or dispersions. In such cases, the composition must be sterile and should be fluid to the extent that easy syringability exists. It should be stable under the conditions of manufacture and storage and will preferably be preserved against the contaminating action of microorganisms, such as bacteria and fungi. The carrier can be a solvent or dispersion medium containing, for example, water, ethanol, polyol (e.g., glycerol, propylene glycol, and liquid polyethylene glycol, and the like), and suitable mixtures thereof. The proper fluidity can be maintained, for example, by the use of a coating such as lecithin, by the maintenance of the required particle size in the case of dispersion and by the use of surfactants.
  • Prevention of the action of microorganisms can be achieved by various antibacterial and antifungal agents, for example, parabens, chlorobutanol, phenol, ascorbic acid, thimerosal and the like. In many cases, it will be preferable to include isotonic agents, for example, sugars, polyalcohols, such as mannitol, sorbitol, or sodium chloride in the composition. Prolonged absorption of the injectable compositions can be brought about by including in the composition an agent which delays absorption, for example, aluminum monostearate and gelatin.
  • In any case, sterile injectable solutions can be prepared by incorporating an active compound (e.g., a polypeptide by itself or in combination with other active agents) in the required amount in an appropriate solvent with one or a combination of ingredients enumerated herein, as required, followed by filtered sterilization. Generally, dispersions are prepared by incorporating the active compound into a sterile vehicle, which contains a basic dispersion medium and the required other ingredients from those enumerated above. In the case of sterile powders for the preparation of sterile injectable solutions, the preferred methods of preparation are vacuum drying and freeze-drying, which yields a powder of an active ingredient plus any additional desired ingredient from a previously sterile-filtered solution thereof. The preparations for injections are processed, filled into containers such as ampoules, bags, bottles, syringes or vials, and sealed under aseptic conditions according to methods known in the art. Further, the preparations may be packaged and sold in the form of a kit. Such articles of manufacture will preferably have labels or package inserts indicating that the associated compositions are useful for treating a subject suffering from, or predisposed to clotting disorders.
  • The pharmaceutical composition can also be formulated for rectal administration as a suppository or retention enema, e.g., containing conventional suppository bases such as cocoa butter or other glycerides.
  • Effective doses of the compositions of the present invention, for the treatment of conditions vary depending upon many different factors, including means of administration, target site, physiological state of the patient, whether the patient is human or an animal, other medications administered, and whether treatment is prophylactic or therapeutic. Usually, the patient is a human but non-human mammals including transgenic mammals can also be treated. Treatment dosages may be titrated using routine methods known to those of skill in the art to optimize safety and efficacy.
  • In one embodiment, the dose of a biologically active moiety (e.g., comprising FIX) can range from about 25 to 100 IU/kg, e.g., 0.417 mg/kg to 1.67 mg/kg. In another embodiment, the dose of a biologically active moiety (e.g., comprising FVIII) can range from about 25 to 65 IU/kg, e.g., 0.003125 mg/kg to 0.008125 mg/kg. In another embodiment, the dose of a biologically active moiety (e.g., comprising FVII), can range from about 90 to 270 ug/kg or 0.090 to 0.270 mg/kg.
  • Dosages can range from 1000 ug/kg to 0.1 ng/kg body weight. In one embodiment, the dosing range is 1 ug/kg to 100 ug/kg. The protein can be administered continuously or at specific timed intervals. In vitro assays may be employed to determine optimal dose ranges and/or schedules for administration. In vitro assays that measure clotting factor activity are known in the art, e. g., STA-CLOT Vlla-rTF clotting assay. Additionally, effective doses may be extrapolated from dose-response curves obtained from animal models, e. g., a hemophiliac dog (Mount et al. 2002, Blood 99 (8): 2670).
  • Doses intermediate in the above ranges are also intended to be within the scope of the invention. Subjects can be administered such doses daily, on alternative days, weekly or according to any other schedule determined by empirical analysis. An exemplary treatment entails administration in multiple dosages over a prolonged period, for example, of at least six months. In some methods, two or more polypeptides may be administered simultaneously, in which case the dosage of each polypeptide administered falls within the ranges indicated.
  • Polypeptides of the invention can be administered on multiple occasions. Intervals between single dosages can be daily, weekly, monthly or yearly. Intervals can also be irregular as indicated by measuring blood levels of modified polypeptide or antigen in the patient. Alternatively, polypeptides can be administered as a sustained release formulation, in which case less frequent administration is required. Dosage and frequency vary depending on the half-life of the polypeptide in the patient.
  • The dosage and frequency of administration can vary depending on whether the treatment is prophylactic or therapeutic. In prophylactic applications, compositions containing the polypeptides of the invention or a cocktail thereof are administered to a patient not already in the disease state to enhance the patient's resistance or minimize effects of disease. Such an amount is defined to be a “prophylactic effective dose.” A relatively low dosage is administered at relatively infrequent intervals over a long period of time. Some patients continue to receive treatment for the rest of their lives.
  • Polypeptides of the invention can optionally be administered in combination with other agents that are effective in treating the disorder or condition in need of treatment (e.g., prophylactic or therapeutic).
  • As used herein, the administration of polypeptides of the invention in conjunction or combination with an adjunct therapy means the sequential, simultaneous, coextensive, concurrent, concomitant or contemporaneous administration or application of the therapy and the disclosed polypeptides. Those skilled in the art will appreciate that the administration or application of the various components of the combined therapeutic regimen may be timed to enhance the overall effectiveness of the treatment. A skilled artisan (e.g. a physician) would be readily be able to discern effective combined therapeutic regimens without undue experimentation based on the selected adjunct therapy and the teachings of the instant specification.
  • It will further be appreciated that the polypeptides of the instant invention may be used in conjunction or combination with an agent or agents (e.g. to provide a combined therapeutic regimen). Exemplary agents with which a polypeptide of the invention may be combined include agents that represent the current standard of care for a particular disorder being treated. Such agents may be chemical or biologic in nature. The term “biologic” or “biologic agent” refers to any pharmaceutically active agent made from living organisms and/or their products which is intended for use as a therapeutic.
  • The amount of agent to be used in combination with the polypeptides of the instant invention may vary by subject or may be administered according to what is known in the art. See for example, Bruce A Chabner et al., Antineoplastic Agents, in GOODMAN & GILMAN'S THE PHARMACOLOGICAL BASIS OF THERAPEUTICS 1233-1287 ((Joel G. Hardman et al., eds., 9th ed. 1996). In another embodiment, an amount of such an agent consistent with the standard of care is administered.
  • As previously discussed, the polypeptides of the present invention, may be administered in a pharmaceutically effective amount for the in vivo treatment of clotting disorders. In this regard, it will be appreciated that the polypeptides of the invention can be formulated to facilitate administration and promote stability of the active agent. Preferably, pharmaceutical compositions in accordance with the present invention comprise a pharmaceutically acceptable, non-toxic, sterile carrier such as physiological saline, non-toxic buffers, preservatives and the like. Of course, the pharmaceutical compositions of the present invention may be administered in single or multiple doses to provide for a pharmaceutically effective amount of the polypeptide.
  • In one embodiment, a chimeric clotting factor of the invention can be administered as a nucleic acid molecule. Nucleic acid molecules can be administered using techniques known in the art, including via vector, plasmid, liposome, DNA injection, electroporation, gene gun, intravenously injection or hepatic artery infusion. Vectors for use in gene therapy embodiments are known in the art.
  • In keeping with the scope of the present disclosure, the chimeric clotting factors of the invention may be administered to a human or other animal in accordance with the aforementioned methods of treatment in an amount sufficient to produce a therapeutic or prophylactic effect.
  • The chimeric proteins of the invention have many uses as will be recognized by one skilled in the art, including, but not limited to methods of treating a subject with a disease or condition. The disease or condition can include, but is are not limited to, hemostatic disorders.
  • In one embodiment, the invention relates to a method of treating a subject having a hemostatic disorder comprising administering a therapeutically effective amount of at least one chimeric clotting factor of the invention.
  • The chimeric clotting factors of the invention treat or prevent a hemostatic disorder by promoting the formation of a fibrin clot. The chimeric clotting factor of the invention can activate any member of a coagulation cascade. The clotting factor can be a participant in the extrinsic pathway, the intrinsic pathway or both.
  • A chimeric clotting factor of the invention can be used to treat hemostatic disorders, e.g., those known to be treatable with the particular clotting factor present in the chimeric clotting factor. The hemostatic disorders that may be treated by administration of the chimeric protein of the invention include, but are not limited to, hemophilia A, hemophilia B, von Willebrand's disease, Factor XI deficiency (PTA deficiency), Factor XII deficiency, as well as deficiencies or structural abnormalities in fibrinogen, prothrombin, Factor V, Factor VII, Factor X, or Factor XIII
  • In one embodiment, the hemostatic disorder is an inherited disorder. In one embodiment, the subject has hemophilia A, and the chimeric protein comprises Factor VII or Factor VIIIa. In another embodiment, the subject has hemophilia A and the chimeric clotting factor comprises Factor VII or Factor VIIa. In another embodiment, the subject has hemophilia B and the chimeric clotting factor comprises Factor IX or Factor IXa. In another embodiment, the subject has hemophilia B and the chimeric protein comprises Factor VII or Factor VIIa. In another embodiment, the subject has inhibitory antibodies to Factor VII or Factor VIIIa and the chimeric clotting factor comprises Factor VII or Factor VIIa. In yet another embodiment, the subject has inhibitory antibodies against Factor IX or Factor IXa and the chimeric protein comprises Factor VII or Factor VIIa.
  • The chimeric clotting factor of the invention can be used to prophylactically treat a subject with a hemostatic disorder. The chimeric clotting factor of the invention can be used to treat an acute bleeding episode in a subject with a hemostatic disorder.
  • In one embodiment, the hemostatic disorder is the result of a deficiency in a clotting factor, e.g., Factor IX, Factor VIII. In another embodiment, the hemostatic disorder can be the result of a defective clotting factor.
  • In another embodiment, the hemostatic disorder can be an acquired disorder. The acquired disorder can result from an underlying secondary disease or condition. The unrelated condition can be, as an example, but not as a limitation, cancer, an autoimmune disease, or pregnancy. The acquired disorder can result from old age or from medication to treat an underlying secondary disorder (e.g. cancer chemotherapy).
  • The invention also relates to methods of treating a subject that does not have a hemostatic disorder or a secondary disease or condition resulting in acquisition of a hemostatic disorder. The invention thus relates to a method of treating a subject in need of a general hemostatic agent comprising administering a therapeutically effective amount of at least one chimeric clotting factor of the invention. For example, in one embodiment, the subject in need of a general hemostatic agent is undergoing, or is about to undergo, surgery. The chimeric clotting factor of the invention can be administered prior to or after surgery as a prophylactic. The chimeric clotting factor of the invention can be administered during or after surgery to control an acute bleeding episode. The surgery can include, but is not limited to, liver transplantation, liver resection, or stem cell transplantation.
  • In another embodiment, the chimeric clotting factor of the invention can be used to treat a subject having an acute bleeding episode who does not have a hemostatic disorder. The acute bleeding episode can result from severe trauma, e.g., surgery, an automobile accident, wound, laceration gun shot, or any other traumatic event resulting in uncontrolled bleeding.
  • This invention is further illustrated by the following examples which should not be construed as limiting. The contents of all references, patents and published patent applications cited throughout this application are incorporated herein by reference.
  • EXAMPLES
  • Throughout the examples, the following materials and methods were used unless otherwise stated.
  • General Materials and Methods
  • In general, the practice of the present invention employs, unless otherwise indicated, conventional techniques of chemistry, biophysics, molecular biology, recombinant DNA technology, immunology (especially, e.g., antibody technology), and standard techniques in electrophoresis. See, e.g., Sambrook, Fritsch and Maniatis, Molecular Cloning: Cold Spring Harbor Laboratory Press (1989); Antibody Engineering Protocols (Methods in Molecular Biology), 510, Paul, S., Humana Pr (1996); Antibody Engineering: A Practical Approach (Practical Approach Series, 169), McCafferty, Ed., Irl Pr (1996); Antibodies: A Laboratory Manual, Harlow et al., C S. H. L. Press, Pub. (1999); and Current Protocols in Molecular Biology, eds. Ausubel et al., John Wiley & Sons (1992).
  • Example 1
  • Heterodimeric Constructs Comprising FVII-Fc and MB9-Fc at the Amino Terminus of the Second Fc Chain
  • Cloning of pSYN-FVII-027
  • The FVII-027 construct comprises cscFc for cleavage when processed during manufacture in a cell. The construct comprises a targeting moiety, a scFv moiety that binds to GPIIbIIIa, MB9.
  • Plasmid (pSYN-FVII-027) was generated for the expression FVII-Fc and MB9-Fc heterodimer, where MB9 is a scFv previously shown to bind to receptor GPIIb/IIIa on activated platelets. Protein from pSYN-FVII-027 is expressed in the cell as a single polypeptide where the C-terminus of the FVII-Fc subunit is linked to the N-terminus of the MB9-Fc subunit by a (GGGGS)6x polypeptide linker. Furthermore, RRRRS and RKRRKR sequences were inserted at the 5′ and 3′ end of the polypeptide linker, respectively, for intracellular cleavage by proprotein convertases following the last Arg at each sequence. Consequently, cells will express a 2 chain FVII-Fc/MB9-Fc heterodimer where the FVII-Fc chain has a RRRRS sequence at the C-terminus, but the remainder of the linker and the RKRRKR sequence have otherwise been removed.
  • As a first step a series of intermediate plasmid were generated using the following primers:
  • HindIII-SalI-BpsEI-Fc-F
    AGTCAAGCTTGTCGACTCCGGAACTCCTGGGCGGACC
    BamHI-linker-Fc-R
    CATCGGATCCCCCGCCACCGGAACCTCCACCGCCTGATCCACCCCCACCT
    GATCCGCCGCCACCTTTACCCGGAGACAGGGAGAGG
    BclI-Fc-F
    CAGTCTTGATCAGACAAAACTCACACATGCCCACC
    scFc-EcoRI-R
    ACTGACGAATTCTCATTTACCCGGAGACAGGGAG
    HindIII-Kozak-FVII-F:
    CGACAAGCTTGCCGCCACCATGGTCTCCCAGGCCCTCAGG
    FVII-HC-BspEI-R:
    AGGAGTTCCGGAGCTGGGCACGGTGGGCATGTGTGAGTTTTGTCGGATCC
    CCCGCCACCGGAACCTCCACCGCCTGATCCACCCCCACCTGATCCGCCGC
    CACCGGACCCACCTCCGCCGGAGCCACCGCCACCGGGAAATGGGGCTCGC
    AGGAGG
  • A 50 ul PCR reaction was carried out with 25 pmol of HindIII-SalI-BpEI-Fc-F and BamHI-linker-Fc-R and template pSYN-Fc-001 using the following cycle: 95° C. 2 minutes; 30 cycles of (95° C. 30 seconds, 54° C. 30 seconds, 72° C. 1 minute). The expected sized band (˜700 bp) was gel purified with a Gel Extraction kit (Qiagen, Valencia, Calif.) and cloned into the HindIII and BamHI restriction sites of pBUDCE4 (Invitrogen, Carlsbad, Calif.) to generate intermediate pSYN-FVII-007. Primers Hindlll-SalI-BpEI-Fc-F and BamHI-linker-Fc-R amplify the Fc region starting at amino acid 221 (EU numbering) and add a HindIII and a SalI restriction enzyme site immediately upstream of site Fc region, as well as a DNA fragment encoding a (GGGGS)4x linker followed by a BamHI site immediately downstream of the Fc coding region. Next, a 50 ul reaction was carried out with 25 pmol of Bc1I-Fc-F and scFc-EcoRI-R, and template pSYN-Fc-011 using the same cycles as above. The expected sized band (˜700 bp) was gel purified as above, cut with restriction enzymes BamHI and EcoRI, and cloned in the Bc1I/EcoRI restriction sites of pSYN-FVII-007 to generate the intermediate plasmid pSYN-FVII-008. The primer pair Bc1I-Fc-F and scFc-EcoRI-R amplifies the Fc region while adding a Ben and EcoRI restriction sites immediately upstream and downstream of the Fc coding region, respectively. To generate the last intermediate plasmid, a 50 ul PCR reaction was carried out with 25 pmol of HindIII-Kozak-FVII-F and FVII—HC-BspEI-R and template pSYN-FVII-001 using the following cycle: 95° C. 2 minutes; 30 cycles of (95° C. 30 seconds, 55° C. 30 seconds, 72° C. 90 seconds). The primer pair amplifies the FVII coding region while adding a DNA fragment at the 3′ end of the molecule encoding a (GGGGS)6x polypeptide linker followed by a fragment of the Fc region ending at amino acid 221 (EU numbering). Primer HindIII-Kozak-FVII-F generates a HindIII restriction site at the 5′ of the molecule followed by a Kozak sequence directly upstream of the FVII coding region. The FVII—HC-BspEI-R primer introduces DNA encoding the polypeptide linker as well as the Fc portion. The expected sized band (1500 bp) was gel purified as above and cloned into the HindIII/BspEI sites of pSYN-FVII-008 to generate pSYN-FVII-011.
  • Next, 2 DNA fragments were synthesized: Genescript-FVII-027-1 and Genescript-FVII-026-2. Genescript-FVII-027-1 consists of a DNA fragment encoding a portion of the Fc region (starting at nucleotide 1306, EU numbering) followed by the sequence RRRRS-(GGGGS)6x-RKRRKR followed by a portion of the MB9 scFv (residues 1-142). An EcoRI site was introduced in the coding sequence of MB9 using the degeneracy of the genetic code to preserve the proper amino acid sequence and overlaps the last 6 bases of Genescript-FVII-027-1. In addition, the first 6 bases at the 5′ include a SapI site found within the Fc region. Genescript-FVII-026-2 consists of a DNA fragment encoding a portion of the MB9 (residues 143-273) followed by a (GGGGS)6x polypeptide linker followed by the Fc region and an EcoRI site. An EcoRI site was introduced in the coding sequence of MB9 using the degeneracy of the genetic code to preserve the proper amino acid sequence and overlaps the first 6 bases of Genescript-FVII-026-2.
  • Genescript-FVII-027-1 was cloned into the SapI and EcoRI sites of pSYN-FVII-011 to generate pSYN-FVII-036. Next, Genescript-FVII-026-2 was cloned into the EcoRI site of pSYN-FVII-036 to generate pSYN-FVII-027. Correct orientation of the last cloning step was confirmed by restriction enzyme analysis and DNA sequencing.
  • Example 2
  • Heterodimeric Constructs Comprising FVII-Fc and MB9-Fc, MB9 at the Carboxy Terminus of the Second Fc Chain
  • Cloning of FVII-037
  • The FVII-037 construct is made using an scFc scaffold which is not cleaved during processing. In this construct the targeting moiety, again the MB9 scFv which binds to GPIIbIIIa is attached to the c-terminus of the second Fc moiety.
  • Synthesis of DNA fragment Genescript-FVII-037 was outsourced (Genescript) This fragment comprises a portion of the Fc region (residues 434 to 447, EU numbering) followed by a (GGGGS)4x polypeptide linker and the MB9 scFv. A SaI/PEcoRI fragment of Genescript-FVII-037 was subcloned into the SapI/EcoRI of pSYN-FVII-011 (refer to P0830) to generate and intermediate construct. A SapI fragment from pSYN-FVII-011 was subcloned into the SapI sites of the intermediate construct to generate pSYN-FVII-037.
  • Example 3
  • Heterodimeric Constructs Comprising FVII-Fc and a Peptide Against GPIb at the Carboxy Terminus of the Second Fc Chain
  • Cloning of THE pSYN-FVII-041 intermediate construct.
  • In order to make this construct, the FVII-041 construct was first made as an intermediate. Synthesis of DNA molecule Genescript-FVII-041 was outsourced (Genescript). This fragment was digested with SapI and cloned into SapI sites of pSYN-FVII-011 to generate pSYN-FVII-041. This process introduces a unique SalI site (residues 412-413 EU numbering, GTG GAC to GTC GAC) in the second Fc.
  • Cloning of pSYN-FVII-044-, -045 and -046.
  • The FVII-041 construct was used as the starting material to generate several constructs that comprise targeting moieties which are peptides that bind to GPIb. The PS4 peptide is used in the -044 construct, the OS1 peptide in the -045 construct, ad the OS2 peptide in the -046 construct. In these constructs an scFc scaffold is used and the peptides are attached via a linker to the C-terminus of the second Fc moiety.
  • Synthesis of Genescript-FVII-044, -045 and -046 was outsourced (Genescript). These DNA fragments were cleaved with SalI/EcoRI and subcloned into the SalI/EcoRI sites of pSYN-FVII-041 to generate pSYN-FVII-044, -045 and -046.
  • Example 4
  • Heterodimeric Constructs Comprising FVII-Fc and a Peptide Against GPIb at the Amino Terminus of the Second Fc Chain
  • Cloning of the pSYN-FVII-043 intermediate.
  • In order to make this construct, the FVII-043 construct was first made as an intermediate. Synthesis of DNA fragment Genescript-FVII-043 was outsourced (Genescript). This fragment comprises a DNA molecule encoding a portion of the Fc region (residues 232 to 447, EU numbering) followed by a (GGGGS)4x polypeptide linker and another portion of the Fc region (residues 221 to 238, EU numbering). This DNA fragment was digested with BspEI and RsrII and subcloned into the BspEI/RsrII sites of pSYN-FVII-042 to generate pSYN-FVII-050. This process introduces a unique SalI site (residues 412-413 EU numbering, GTG GAC to GTC GAC) in the first Fc. A HindIII/EcoRI fragment of pSYNFVII-050 was subcloned into the HindIII/EcoRI sites of pSYN-FVII-011 to generate p SYN-FVII-043.
  • Cloning of pSYN-FVII-047, -048 and -049.
  • The FVII-043 construct was used as the starting material to generate several constructs that comprise targeting moieties which are peptides that bind to GPIb. The PS4 peptide is used in the -047 construct, the 0S1 peptide in the -048 construct, and the 0S2 peptide in the -049 construct. In these constructs an scFc scaffold is used and the peptides are interposed between the scFc linker and a linker which is attached to the N-terminus of the second Fc moiety.
  • Synthesis of DNA molecules Genescript-FVII-047, -048 and -049 was outsourced (Genescript). A Sal/RsrII fragment from Genescript-FVII-047, -048 and -049 was subcloned into SalI/RsrII sites of pSYN-FVII-043 to generate pSYN-FVII-047, -048 and 049, respectively.
  • Example 5
  • Heterodimeric Constructs Comprising a Gla-Deleted FVII-Fc and a Targeting Molecule
  • Cloning of the FVII-028 intermediate
  • In order to make this construct, the FVII-028 construct was first made as an intermediate. Synthesis of DNA fragment Genescript-FVII-028 was outsourced (Genescript). This fragment was cut with HindIII/XbaI and subcloned into pSYN-FVII-011 to generate p SYN-FVII-028.
  • Cloning of FVII-053
  • The FVII-028 construct was used as the starting material to generate a construct that comprises a targeting moiety and employs a clotting factor that lacks a Gla domain. For this construct, amino acids 1-35 were removed from FVII and an RKRRKR insertion was added after residue R152 (WT FVII numbering) to facilitate intracellular activation. The MB9 scFv served as the targeting moiety.
  • DNA molecule Genescript-FVII-025 was outsourced and an XbaI/BsiWI fragment from this molecule was subcloned into XbaI/BsiWI sites of pSYN-FVII-028 to generate p SYN-FVII-053.
  • Example 6
  • Heterodimeric Constructs Comprising a Factor VII Heavy and Light Chains as Two Separate Polypeptides.
  • Cloning of pSYN-FVII-024 intermediate construct
  • The FVII-024 construct is one in which the heavy and light chains of factor FVII are not contiguous in a single chain molecule. The construct employs cscFc such that the cscFc linker is cleaved by proteases in the trans-Golgi network This cleavage results in linker removal as well as activation of FVII, resulting in the expression of activated FVIIaFc.
  • The coding sequence of FVII was obtained by reverse transcription coupled to polymerase chain reaction from a human liver mRNA library (Ambion, Austin, Tex.) using the following primers:
  • FVII-F1
    GGGAATGTCAACAGGCAGGG
    FVII-R1
    CTTGGCTTTCTCTCCACAGGC
  • A 50 μl reaction was carried out with 10 pmol of each primer using the Superscript One-step RT-PCR with Platinum Taq system (Invitrogen, Carlsbad, Calif.) according to the manufacturer's standard protocol in a MJ thermocycler. The cycle used was 50° C. for 30 minutes for the reverse transcription followed by denaturing at 94° C. for 2 minutes and 30 cycles of (94° C. 30 seconds, 53° C. 30 seconds, 72° C. 90 seconds) followed by 10 minutes at 72° C. The expected sized band (˜1400 bp) was gel-purified with a Gel Extraction kit (Qiagen, Valencia, Calif.) and cloned in pCR2.1 TOPO using the TOPO TA Cloning kit (Invitrogen, Carlsbad, Calif.) to produce the intermediate plasmid pSYN-FVII-001. To construct a plasmid for the expression of a two-chain FVII-Fc and Fc heterodimer, the FVII coding sequence was PCR-amplified using the following primers:
  • HindIII-Kozak-FVII-F
    CGACAAGCTTGCCGCCACCATGGTCTCCCAGGCCCTCAGG
    BspeI-Fc-FVII-R
    CGACTCCGGAGCTGGGCACGGTGGGCATGTGTGAGTTTTGTCGGGAAATG
    GGGCTCGCAGG
  • The forward primer HindIII-Kozak-FVII-F adds a Hindlll restriction site followed by a Kozak sequence immediately upstream of the FVII coding region. The reverse primer BspeI-Fc-FVII-R adds a fragment of the constant region of IgG1 (the Fc region) comprising amino acids 221-233 (EU numbering). This process also incorporates a BspEI restriction site at amino acids 231-233 using the degeneracy of the genetic code to preserve the correct amino acid sequence (EU numbering). A 50 ul reaction was carried out with 15 pmol of each primer and template pSYN-FVII-001 using Platinum Pfx DNA Polymerase system according to manufacturer's protocol in a MJ Thermocycler using the following cycles: 95° C. 2 minutes; 30 cycles of (95° C. 15 seconds, 49° C. 30 seconds, 68° C. 90 seconds); 68° C. 10 minutes. Plasmid pSYN-FIX-027 (pBUD FIXFc/Fc) was digested with Hindlll and BspEI and the expected sized band for the vector (approximately 5800 bp) was purified away from the FIX insert (expected size band approximately 1480 bp) with a Gel Extraction kit (Qiagen, Valencia, Calif.). Next, the PCR-amplified FVII sequence was subcloned into HindIII and EcoRI sites of the vector derived from pSYN-FIX-027 after removing the FIX insert. This generated pSYN-FVII-002 (pBUD FVIIFc/Fc). Next, A (GGGGS)6x polypeptide linker was added between FVII and the Fc region coding sequences in pSYN-FVII-002 using the following primers:
  • FVII-linker-F:
    CATCCCCAGCACGTACGTCC
    FVII-Linker-R:
    GGGCATGTGTGAGTTTTGTCTGATCCCCCGCCACCGGAACCTCCACCGCC
    TGATCCACCCCCACCTGATCCGCCGCCACCGGACCCACCTCCGCCGGAGC
    CACCGCCACCGGGAAATGGGGCTCGCAGGAGG
    Fc-linker-F:
    GACAAAACTCACACATGCCCACC
    Fc-linker-R:
    GCAGAATTCTCATTTACCCGGAG
  • Two 12 μl PCR reactions were carried out with either 12 pmol of FVII-linker-F and FVII-Linker-R (reaction 1) or Fc-linker-F and Fc-linker-R (reaction 2) using Expand High Fidelity System (Boehringer Mannheim, Indianapolis, Ind.) according to manufacturer's standard protocol in a MJ Thermocycler. The first and second reactions were carried out with 1 μg of pSYN-FVII-002 as template using the following cycle: 94° C. 2 minutes; 14 cycles of (94° C. 30 seconds, 55° C. 30 seconds, 72° C. 2 minutes); 72° C. 10 minutes. The expected sized bands (532 bp for reaction 1 and 670 bp for reaction 2) were gel purified with a Gel Extraction kit (Qiagen, Valencia, Calif.), then combined in a PCR reaction with 25 pmol of FVII-linker-F and Fc-linker-R as before, but with 30 rounds of amplification. The expected sized band (1200 bp) was gel purified with a Gel Extraction kit (Qiagen, Valencia, Calif.) and digested with restriction enzymes KpnI and EcoRI. The expected sized band (920 bp) was gel purified as before and cloned into the KpnI/EcoRI sites of pSYN-FVII-002 to generate pSYN-FVII-003 (pBUD FVIIFc/6x(GGGGS)/Fc).
  • Cloning of pSYN-FVII-024 to express a two-chain heterodimer
  • Plasmid (pSYN-FVII-024) was generated for the expression of a two-chain heterodimer where one chain consists of the FVII light chain (residues 1-152) followed by a (GGGGS)6x linker followed by the Fc region, while the other chain contains a FVII heavy chain (residues 153 to 406) followed by a (GGGGS)6x linker followed by the Fc region. The plasmid is designed to express the heterodimer as a single polypeptide where the C-terminus of the FVII heavy chain-linker-Fc chain is connected to the N-terminus of the heavy chain-linker-Fc chain by the following polypeptide sequence: RRRRS-(GGGGS)6x-RKRRKR, where the RRRRS and RKRRKR sequences are proprotein convertase cleavage sites. Intracellular cleavage by proprotein convertases following the last Arg at each cleavage site can result in removal of the polypeptide linker. Consequently, cells will express a 2 chain heterodimer where the FVII light chain-linker-Fc chain has a RRRRS sequence at the C-terminus, but the remainder of the linker and the RKRRKR sequence have otherwise been removed. Construction of the pSYN-FVII-024 and several intermediate plasmids required the use of the following primers:
  • HindIII-SalI-BpEI-Fc-F
    AGTCAAGCTTGTCGACTCCGGAACTCCTGGGCGGACC
    BamHI-linker(PACE1)-Fc-R
    CATCGGATCCCCCGCCACCGGAACCTCCACCGCCTGATCCACCCCCACCT
    GATCCGCCGCCACCGCTCCGGCGGCGCCGTTTACCCGGAGACAGGGAGAG
    G
    HindIII-Kozak-FVII-F
    CGACAAGCTTGCCGCCACCATGGTCTCCCAGGCCCTCAGG
    BspEI-Fc-linker-FVIILC-R
    GAGTTCCGGAGCTGGGCACGGTGGGCATGTGTGAGTTTTGTCTGATCCCC
    CGCCACCGGAACCTCCACCGCCTGATCCACCCCCACCTGATCCGCCGCCA
    CCGGACCCACCTCCGCCGGAGCCACCGCCACCTCGGCCTTGGGGTTTGCT
    GG
    BamHI-2xlink-pace-HC-F
    CAGTCTGGATCCGGCGGTGGAGGTTCCGGTGGGGGTGGATCAAGGAAGAG
    GAGGAAGAGGATTGTGGGGGGCAAGGTGTGCC
    Fc-EcoRI-R
    ATGTCTGAATTCTCATTTACCCGGAGACAGGGAGAGG
  • To generate the first intermediate plasmid, a PCR reaction was performed with 25 pmol of primers Hindlll-SalI-BpEI-Fc-F and BamHI-linker(PACE1)-Fc-R and template pSYN-Fc-001 using Expand High Fidelity System (Boehringer Mannheim, Indianapolis, Ind.) according to manufacturer's standard protocol in a MJ Thermocycler. The following cycles were used: 95° C. 2 minutes; 30 cycles of (95° C. 30 seconds, 58° C. 30 seconds, and 72° C. 1 minute); 72° C. 10 minutes. The correct sized band (approximately 730 bp) was gel purified as above and cloned into the HindIII/BamHI sites of pBUDCE4 vector (Invitrogen, Carlsbad, Calif.), generating pSYN-FVII-014. PCR amplification with primers HindIII-SalI-BpEI-Fc-F and BamHI-linker(PACE1)-Fc-R generated a DNA fragment encoding a portion of the Fc region (Amino A X-Y) followed by an RRRRS sequence and (GGGGS)2xpolypeptide linker. Primer HindIII-SalI-BpEI-Fc-F introduces a HindIII and SalI restriction site at the 5′ end of the molecule, while primer BamHI-linker(PACE1)-Fc-R introduces a BamHI at the 3′ end that overlaps the codons encoding the last 2 residues of the GGGGS linker (residues GS with codons GGA TCC). Next, another PCR reaction was performed as above with primers HindIII-Kozak-FVII-F and BspEI-Fc-linker-FVIILC-R and template pSYN-FVII-002 using the same conditions described for cloning of pSYN-FVII-014, but with an annealing temperature of 57° C. The expected sized band (approximately 700 bp) was gel purified and cloned into the Hindlll and BspEI sites of pSYN-FVII-014 to generate pSYN-FVII-023. Primers Hindlll-Kozak-FVII-F and BspEI-Fc-linker-FVIILC-R amplified a DNA fragment encoding the FVII light chain followed by a (GGGGS)6x polypeptide linker and a portion of the Fc region up to amino acid 232 (EU numbering). Primer HindIII-Kozak-FVII-F introduces a HindIII restriction site at the 5′ end of the molecule followed by a Kozak sequence while primer BspEI-Fc-linker-FVIILC-R adds a BspeI site at the 3′ end of the molecule.
  • In the final step a PCR reaction was carried out as above with primers BamHI-2×link-pace-HC-F and Fc-EcoRI-R and template pSYN-FVII-003 with the following cycles: 95° C. 2 minutes; 30 cycles of (95° C. 30 seconds, 55° C. 30 seconds, and 72° C. 2 minute); 72° C. 7 minutes. This PCR reaction generated a DNA molecule encoding a (GGGGS)2x polypeptide linker followed by a RKRRKR sequence followed by the FVII heavy chain. Primers BamHI-2×link-pace-HC-F and Fc-EcoRI-R introduce a BamHI site and an EcoRI site at the 5′ and 3′ end of the molecule, respectively. The expected sized band (approximately 1600 bp) was cloned into the BamHI and EcoRI sites of pSYN-FVII-023 to generate pSYN-FVII-024.
  • Cloning of intermediate pSYN-FVII-073
  • A silent mutation was introduced in the first Fc moiety of FVII-024 by PCR-based site-directed mutagenesis methods, resulting in the generation of a SalI site at DNA region encoding amino acids in position 412 and 413 (EU numbering). This generated the intermediate construct FVII-073.
  • Cloning of pSYN-FVII-057
  • The synthesis of the DNA sequence comprising nucleotides from the SalI to BsiWI sites of pSYN-FVII-057 was outsourced. This DNA was subcloned into the SalI/BsiWI sites of pSYN-FVII-073 to generate pSYN-FVII-057.
  • Cloning of pSYN-FVII-058, pSYN-FVII-059, pSYN-FVII-060, pSYN-FVII-061 and pSYN-FVII-062
  • These constructs were cloned as described for pSYN-FVII-057 (outsourced synthesis of DNA from SalI to BsiWI and subcloned into pSYN-FVII-073).
  • Cloning of pSYN-FVII-066
  • The synthesis of the DNA sequence comprising nucleotides from the SalI to RsrII sites of pSYN-FVII-066 was outsourced. This DNA was subcloned into the SalI/RsrII sites of pSYN-FVII-043 to generate pSYN-FVII-066.
  • Cloning of pSYN-FVII-067
  • The synthesis of the DNA sequence comprising nucleotides from the SalI to EcoRI sites of pSYN-FVII-067 was outsourced. This DNA was subcloned into the SalI/EcoRI sites of pSYN-FVII-041 to generate pSYN-FVII-067.
  • Cloning of pSYN-FVII-090
  • The synthesis of the DNA sequence comprising nucleotides from the BamHI to BsiWI sites of pSYN-FVII-090 was outsourced. This DNA was subcloned into pSYN-FVII-061 by 3-way ligation (where the outsourced DNA was cut with BamHI/BsiWI and pSYN-FVII-061 with BamHI/BsiWI/NotI) to generate pSYN-FVII-090.
  • Cloning of pSYN-FVII-100
  • A portion (amino acids 311 to 322 of the FVII mature sequence) of the 170 loop of FVII was replaced with the 170 loop of trypsin (amino acids EASYPGK). This mutation was introduced by standard overlapping PCR methods using the pSYN-FVII-090 as template and backbone structure to generate pSYN-FVII-100.
  • Cloning of pSYN-FVII-115
  • A triple point mutation (V158D, E296V and M298Q; mature FVII sequence numbering) was introduced into the FVII coding region of pSYN-FVII-090 by PCR-based site-directed mutagenesis to generate pSYN-FVII-115.
  • Cloning of pSYN-FVII-118
  • The synthesis of the DNA sequence comprising nucleotides from the XbaI to BsiWI sites of pSYN-FVII-118 was outsourced. This DNA was subcloned into the XbaI/BsiWI sites of pSYN-FVII-011 to generate pSYN-FVII-118.
  • Cloning of pSYN-FVII-119
  • The synthesis of the DNA sequence comprising nucleotides from the XbaI to BsiWI sites of pSYN-FVII-119 was outsourced. This DNA was subcloned into the XbaI/BsiWI sites of pSYN-FVII-011 to generate pSYN-FVII-119.
  • Cloning of pSYN-FVII-127
  • A DNA fragment comprising the 170 loop of trypsin was generated by PCR using pSYN-FVII-100 as template. This PCR reaction generated BsiWI and BspEI restriction sites at the 5′ and 3′, respectively. The DNA fragment was subcloned into the BsiWI/BspEI sites of pSYN-FVII-118 to generate pSYN-FVII-127.
  • Cloning of pSYN-FIX-042
  • A HindIII/BspEI fragment from pSYN-FIX-030 (as described in U.S. Pat. No. 7,566,565) was subcloned into the HindIII/BspEI sites of pSYN-FVII-011 to generate pSYN-FIX-042.
  • Cloning of pSYN-FIX-068
  • A HindIII/BspEI fragment from pSYN-FIX-030 (plasmid described in full in U.S. Pat. No. 7,566,565) was subcloned into the HindIII/BspEI sites of pSYN-FVII-066 to generate pSYN-FIX-068.
  • Cloning of pSYN-FIX-088
  • A BspEI-EcoRI fragment from pSYN-FIX-067 was subcloned into BspEI-EcoRI sites of pSYN-FIX-053 to generate pSYN-FIX-088.
  • Cloning of pSYN-FIX-089
  • A BspEI-EcoRI fragment from pSYN-FIX-048 was subcloned into BspEI-EcoRI sites of pSYN-FIX-053 to generate pSYN-FIX-089
  • Cloning of pSYN-FIX-090
  • A DNA fragment comprising the FIX coding region from the XbaI site to the C-terminus of the protein followed by a 6x(GGGGGS) linker, the SCE5 coding sequence and an EcoRI site was outsourced for synthesis and subcloned into the XbancoRI sites of pSYN-FIX-053 to generate pSYN-FIX-090. The SCE5 sequence is set forth below:
  • AQVQLQESGGGLVQPGGSLRLSCAASGEMESRYAMSWVRQAPGKGPEW
    VSGISGSGGSTYYADSVKGRFTVSRDNSKNTLYLQMNSLRAEDTAVYY
    CARGATYTSRSDVPDQTSFDYWGQGTLVTVSSGSASAPKLEEGEFSEA
    RVSELTQDPAVSVALGQTVRITCQGDSLRNFYASWYQQKPGQAPTLVI
    YGLSKRPSGIPDRFSASSSGNTASLTITGAQAEDEADYYCLLYYGGGQ
    QGVFGGGTKLTVLRQPKAAPSVTLFPPSSAA
  • Cloning of pSYN-FVII-094
  • A DNA fragment comprising a sequence encoding a 6x(GGGGS) linker followed by the SCE5 coding sequence was synthesized (outsourced) and cloned into the EcoRV/EcoRI sites of a pSYN-FVII-011 variant that had been previously modified to generate an EcoRV site at the C-terminus of the FVII coding region.
  • Cloning of pSYN-FVII-088
  • The synthesis of the DNA sequence comprising nucleotides from the SalI to RsrII sites of pSYN-FVII-088 was outsourced. This DNA was subcloned into the SalI/RsrII sites of pSYN-FVII-066 to generate pSYN-FVII-088.
  • Cloning of pSYN-FVII-125
  • A DNA fragment was PCR amplified from pSYN-FVII-088, comprising the AP3 region and part of the linker. This PCR reaction generated BamHI and EcoRI sites at the 5′ and 3′ of the DNA fragment, respectively. This DNA fragment was subcloned into the BamHI/EcoRI sites of pSYN-FVII-011 to generate pSYN-FVII-125.
  • Cloning of pSYN-FVIII-041
  • The coding sequence of human recombinant B-domain deleted FVIII was obtained by reverse transcription-polymerase chain reaction (RT-PCR) from human liver poly A RNA (Clontech) using FVIII-specific primers. The FVIII sequence includes the native signal sequence for FVIII. The B-domain deletion starts after serine 743 (S743; 2287 bp) and ends before glutamine 1638 (Q1638; 4969 bp) for a total deletion of 2682 bp (SQ version).
  • The coding sequence for human recombinant Fc was obtained by RT-PCR from a human leukocyte cDNA library (Clontech) using Fc specific primers. Primers were designed such that the B-domain deleted FVIII sequence was fused directly to the N-terminus of the Fc sequence with no intervening linker. The FVIIIFc DNA sequence was cloned into the mammalian dual expression vector pBUDCE4.1 (Invitrogen) under control of the CMV promoter.
  • A second identical Fc sequence including the mouse Igk signal sequence was obtained by RT-PCR and cloned downstream of the second promoter, EF1α, in the expression vector pBUDCE4.1. This final construct was designated pSYN-FVIII-013.
  • A second plasmid was created from similar constructs using PCR and standard molecular biology techniques, in order to express rFVIIIBDD-Fc-Fc in which the rFVIIIBDDFc coding sequence was fused to the second Fc sequence with a (GGGGS)4 linker, allowing for production of only the rFVIIIBDD-Fc monomer-dimer hybrid in transient transfection. This construct was designated pSYN-FVIII-041.
  • Cloning of pSYN-FVIII-049
  • Generated intermediate pSYN-FVIII-048 by cloning NheI/XhoI fragment from pBUD-CE4.1 into pSYN-FVIII-013. The synthesis of a DNA fragment comprising the region from RsrII to XbaI sites of pSYN-FVIII-049 was outsourced. This fragment was subcloned into the RsrII/XbaI sites of pSYN-FVIII-048 to generate p SYN-FVIII-049.
  • Cloning of pSYN-FVIII-108
  • A SalI/RsrII fragment from pSYN-FVII-066 was subcloned into pSYN-FVIII-049 to generate pSYN-FVIII-108.
  • Example 7
  • Additional Attempts at Expression of Activated Constructs
  • Several other constructs were made with the goal of expressing activated FVII.
  • However, these constructs did not successfully express activated molecules. By Western blot it was demonstrated that that the FVII heavy chain cannot be expressed with a free N terminus using a common method of fusing a heterologous signal peptide to the N-terminus of the heavy chain.
  • Cloning of pSYN-FVII-010
  • The FVII-010 construct is one in which the heavy chain of factor VII was expressed in the context of an scFc scaffold and the light chain was expressed separately.
  • PCR-amplify with primer pairs FVII-HC-Hind3-IggKss-F/FVII—HC-BspEI-R, using pSYN-FVII-001 (see supra.). Clone in BspEI/HindIII sites of pSYN-FVII-008 (see supra), generating pSYN-FVII-009.
  • PCR amplify FVII light chain from pSYN-FVII-003 (refer to P0830) with primers FVII-LC-NotI-F/FVII-LC-XhoI-R and clone in pSYN-FVII-009 to generate pSYN-FVII-010.
  • Primers
    FVII-HC-BspEI-R
    AGGAGTTCCGGAGCTGGGCACGGTGGGCATGTGTGAGTTTTGTCGGAT
    CCCCCGCCACCGGAACCTCCACCGCCTGATCCACCCCCACCTGATCCG
    CCGCCACCGGACCCACCTCCGCCGGAGCCACCGCCACCGGGAAATGGG
    GCTCGCAGGAGG
    FVII-HC-Hind3-IggKss-f
    ACTGACAAGCTTGCCGCCACCATGGAGACAGACACACTCCTGCTATGG
    GTACTGCTGCTCTGGGTTCCAGGTTCCACTGGTATTGTGGGGGGCAAG
    GTGTGC
    FVII-LC-NotI-F
    ACTGACGCGGCCGCGCCGCCACCATGGTCTCCCAGG
    FVII-LC-XhoI-R
    ACTGACCTCGAGTTATCGGCCTTGGGGTTTGCTGG
  • Cloning of pSYN-FVII-013
  • The FVII-013 construct is one in which the light chain was expressed in the context of an scFc scaffold and the heavy chain was expressed separately.
  • PCR-amplify with primer pair FVII-LC-linker-BamHI-R/HindIII-Kozak-FVII-F from pSYN-FVII-001 (refer to P0830) and clone in BamHI/HindIII sites of pSYN-FVII-011, generating pSYN-FVII-012. PCR-amplify FVII-HC from pSYN-FVII-009 using primer pair FVII-HC-NotI-F/FVII-HC-XhoI-R ad subclone in pSYN-FVII-012 to generate pSYN-FVII-013.
  • Primers
    FVII-LC-6xlinker-BamHI
    RACTGACGGATCCCCCGCCACCGGAACCTCCACCGCCTGATCCACCCC
    CACCTGATCCGCCGCCACCGGACCCACCTCCGCCGGAGCCACCGCCAC
    CTCGGCCTTGGGGTTTGCTGGC
    HindIII-Kozak-FVII-F
    CGACAAGCTTGCCGCCACCATGGTCTCCCAGGCCCTCAGG
    FVII-HC-NotI-F
    ACTGACGCGGCCGCGCCGCCACCATGGAGACAGAC
    FVII-HC-XhoI-R
    ACTGACCTCGAGTTAGGGAAATGGGGCTCGCAGGAG
  • Cloning of pSYN-FVII-018
  • For the FVII-018 construct, the heavy chain of FVII was expressed as an Fc fusion protein and the light chain of FVII was separately expressed as a separate Fc fusion protein.
  • Primers FVII-HC-Hind3-IggKss-F/scFc-EcoRI-R were used to PCR amplify HCFVII-linker-Fc, using pSYN-FVII-010 as template. Subclone in HindIII/EcoRI sites of pBUDCE4. This makes pSYN-FVII-017. Next, PCR-amplify from pSYN-FVII-013 with primers FVII-LC-NotI-F/FC-XHOI-R and subclone in XhoI/NotI sites of FVII-017. This makes PSYN-FVII-018.
  • Primers
    scFc-EcoRI-R
    ACTGACGAATTCTCATTTACCCGGAGACAGGGAG
    Fc-XhoI-R
    AGCTCTCGAGTCATTTACCCGGAGACAGGG
  • Example 8
  • Attempts at Expression of Activatable Constructs
  • Cloning of FVII-039, -040
  • Several constructs were made in an attempt to generate constructs in which Factor VII can be activated in vivo at the site of clotting using an appropriate cleavage site, in this case the DFTR Factor XIa cleavage site.
  • The 039 construct was made in the context of an scFc scaffold. The construct included the FVII light chain, the FXIa cleavage site, and the FVII heavy chain with a I153V mutation in linear sequence attached to the N-terminus of the first Fc moiety.
  • The 040 construct was also made in the context of an scFc scaffold. The construct included the FVII light chain with an R152 deletion, the FXIa cleavage site, and the FVII heavy chain with an I153V mutation in linear sequence attached to the N-terminus of the first Fc moiety. The DFTR cleavage sequence is a natural FXIa sequence found in FIX. In FIX, the DFTR sequence is followed by a valine, so an I152V mutation was introduced in pSYN-FVII-039, -040 to increase FXIa cleavage efficiency.
  • Synthesis of DNA molecule Genescript-FVII-039 and -040 was outsourced (Genescript). An XbaI/BsiWI fragment from Genescript-FVII-039 and -040 was subcloned into XbaI/BsiWI sites of pSYN-FVII-011 to generate pSYN-FVII-039 and -040, respectively.
  • Example 9
  • Transient Transfection of Constructs
  • For expression of constructs, HEK-293-F cells were grown in suspension in Freestyle media (Invitrogen) supplemented with vitamin K3 (For FVII and FIX transfections only) (Sigma Aldrich, St. Louis, Mo.) to 2 μg/liter (growth media) as suspension cells at 37° C./10% CO2. Cells we subcultured every three to four days by seeding at cell density of 5×105 cell s/ml.
  • Twenty-four hours prior to transfection cells were seeded at a density of 7×105 cells/ml in growth media supplemented with LONG™ R3IGF-1 (Sigma Aldrich, St. Louis, Mo.) to 20 μg/liter (transfection media). On the day of transfection, a transfection solution was made with a volume equal to 5% of the total volume of the cell culture to be transfected. In the transfection solution DNA was added (final concentration 20 mg/L) to a freshly made solution of PEI (60 mg/L) in transfection media. The solution was swirled for 30 seconds and incubated for five minutes at room temperature before adding directly to the cell culture. Four hours later a volume equal to the cell culture volume of OptiCHO (Invitrogen) supplemented with vitamin K3, LONG™ R3IGF-1 and 200 mM L-glutamine was added to the cells. The cell culture was allowed to grow as shown above and daily media samples were taken to assess protein expression. On the day of harvest, the cells were spun down and the media filtered in preparation for protein purification or protein analysis by protein A pulldown/western blot.
  • Example 10
  • Protein Purification of FVIIFc Molecules (except FVII-028 and FVII-053) and FIXFc Molecules
  • FVIIFc molecules were purified from conditioned media using the following columns: 1) Anion exchange chromatography with pseudo-affinity elution (e.g. Q sepharose 4FF (GE Healthcare) followed by elution with varying levels of CaCl2 to selectively elute the most active species), followed by 2) shFcRn (soluble human FcRn) affinity (NHS-coupled shFcRn with sepharose 4FF beads) chromatography, binding Fc-containing proteins at low pH (e.g. pH 6.2) and eluting at neutral pH (e.g. pH 8.0). In some cases, an additional step was included utilizing cation exchange chromatography with NaCl elution. These purification steps utilized standard methods known to those in the art to generate purified proteins of >95% purity by SEC analysis and SDS-PAGE. FIXFc proteins were purified as previously described in U.S. Pat. No. 7,566,565.
  • Example 11
  • Protein Purification of FVII-028 and FVII-053
  • FVII-028 and -053 were purified from conditioned media using the following columns: 1) Hydrophobic interaction chromatography (e.g. Phenyl FF (high sub) (GE Healthcare)), followed by 2) Anion/cation exchange chromatography with salt elution. These purification steps utilized standard methods known to those in the art to generate purified proteins of >95% purity by SEC analysis and SDS-PAGE.
  • Example 12
  • Purification of FIX-090
  • FIX-090 was purified through a 2-step chromatography process, first using an immunoaffinity chromatography step with an anti-GLA domain antibody, followed by anion exchange chromatography using pseudoaffinity elution similar to FIXFc proteins described above. These purification steps utilized standard methods known to those in the art to generate purified proteins of >95% purity by SEC analysis and SDS-PAGE.
  • Example 13
  • Purification of FVIIIFc proteins
  • FVIIIFc proteins were purified from clarified and chemically defined harvest media using a two or three column purification process, including a FVIII-specific affinity purification step (McCue 2009) followed by a combination of anion exchange with standard NaCl elution and/or shFcRn (soluble human FcRn) affinity (NHS-coupled shFcRn with sepharose 4FF beads) chromatography, binding Fc-containing proteins at low pH (e.g. pH 6.2) and eluting at neutral pH (e.g. pH 8.0). These purification steps utilized standard methods known to those in the art to generate purified proteins of >95% purity by SEC analysis and SDS-PAGE.
  • Example 14
  • Activation of FVII Constructs
  • Fractions eluted from the FcRn column containing FVIIFc were pooled, and total protein was concentrated to 4 mg/ml. The CaCl2 concentration was raised to 5 mM and the sample was incubated at 4° C. for 24 to 48 hours until at least 80% of FVIIFc was activated. The extent of activation was assessed by SDS PAGE (FIG. 10).
  • Example 15
  • FVIIa Activity Assays, Soluble Tissue Factor Method
  • Specific activity of the FVIIaFc variants was determined by the soluble tissue factor method. Unlike lipidated full length tissue factor, soluble tissue factor (extracellular portion of tissue factor) can't activate FVII into FVIIa, but it acts as an activator of the conversion of factor X into factor Xa by FVIIa. To determine the specific activity of FVIIaFc variants, A STACLOT® FVII-rTF kit (Diagnostica Stago, Asnieres, France) was used following manufacturer's recommendations. Table 1 summarizes the data and shows comparable specific activity for all variants.
  • TABLE 1
    Specific activity of FVIIaFc variants based
    on the soluble tissue factor method
    FVIIaFc IU/nM
    FVII-011 991
    FVII-024 929
    FVII-027 790
    FVII-037 1131
    FVII-044 1300
    FVII-045 906
    FVII-046 1145
    FVII-047 924
    FVII-048 973
    FVII-049 1130
    FVII-053 929
  • Example 16
  • FACs Assays to Study Binding of FVIIaFc and Platelets
  • In this example, the following reagents and methods were used:
  • Reagents
  • ADP: Sigma Aldrich, cat #A2754, stock 1 mM, working concentration 10 uM
  • SFLLRN peptide: in-house synthesis, stock concentration 5 mg/ml (6.7 mM), working concentration 50 ug/ml (67 uM)
  • FVII antibody-FITC-labeled: Affinity Biologicals SAFVII-APFTC
  • Platelet buffer: 15 mM HEPES, 138 mM NaCl, 2.7 mM KCl, 1 mM MgCl2, 5 mM CaCl2, 5.5 mM dextrose and mg/ml BSA, pH 7.4
  • Method
  • Count platelets
  • Add 20 ul of ˜2-4×108 cells/ml gel-purified platelets to 1 ml of platelet buffer
  • Make 100 ul aliquot for each sample
  • Add agonist and FVIIaFc (to desired concentration) as needed Incubate at 37C for 15 minutes
  • Add equal volume of HBS/5 mM CaCl2/1.5% formaldehyde, incubate 20′ at RT
  • Spin 15′ at 3000 g
  • Wash in HBS/5 mM CaCl2/1 mg/ml BSA, spin again and resuspend in 100 ul of platelet buffer.
  • Add 2.5 ul of FVII antibody-FITC-labeled and incubate for 30 at room temperature.
  • Analyze by FACs
  • Example 17
  • Thrombin Generation Assay
  • In this example, the following reagents and methods were used:
  • Reagents
  • FV: HTI, cat #HCV-0100, lot #Z0413, 5.1 mg/ml
  • Prothrombin: HTI, cat #HCP-0010, lot #Z0128, 4.8 mg/ml
  • FX: HTI, cat #HCX-0050, lot #X0401, 5.4 mg/ml
  • ATIII: HTI, cat #HCATIII-0120, lot #Y0401, 8.2 mg/ml
  • TFPI: American Diagnostica, cat #4900PC, lot #081031, 100 ug/ml
  • Reader: Fluorskan, Thermo Electron Fluorometer
  • Thrombin Calibrator: Thrombinoscope, cat #TS20.00
  • Fluca: Thrombinoscope, cat #TS50.00
  • Platelet buffer: 15 mM Hepes pH 7.4, 138 mM NaCl, 2.7 mM KCl, 1 mM MgCl2, 5.5 mM Dextrose, supplemented with 1 mg/ml BSA before using
  • ADP: Sigma Aldrich, cat #A2754, stock 1 mM, working concentration 10 uM
  • SFLLRN peptide: in-house synthesis, stock concentration 5 mg/ml (6.7 mM), working concentration 50 ug/ml (67 uM)
  • Primary stock Working solution [final]
    (mg/ml) (ug/ml) ug/ml
    FV 5.1 105.6 4.4
    FII 4.8 1200 54
    FX 5.4 120 5
    ATIII 8.2 1800 75
    TFPI 0.1 1.44 0.06
    Platelet 2-10E8 1.74E8 0.6E8
    FVIIaFc
    1 mg/ml (10 uM) 1200 nM  200 nM
    FVIIaFc
    1 mg/ml (10 uM)  200 nM 62.5 nM
    FVIIaFc
    1 mg/ml (10 uM)  62.5 nM 12.5 nM
  • Method
      • Set up software according to manufacturer's recommendations
      • Prewarm water and Fluca buffer
      • Make clotting factor mix. Dilute stock concentration of FV, FII, FX, ATIII and TFPI to make working solution. Need 5 ul/well, so for a 30 well assay prepare 180 ul of each Mix all the clotting factor solutions in a single bulk solution
      • Premake FVIIaFc dilutions. Make 1200 nM solution (12 ul into 88 ul of buffer) in 100 ul and dilute 4-fold twice (25 ul into 75 ul of buffer) to obtain 200 nM and 62.5 nM solutions
      • Make calibrator solution (1 ml of warm water in calibrator vial)
      • Add 20 ul of buffer or calibrator to the wells
      • Add 25 ul of clotting factor mix to the wells (or 25 ul of buffer to calibrator wells)
      • Add 20 ul of FVIIaFc to the wells (or buffer to calibrator wells)
      • Add 35 ul of platelets (previously add ADP and SFLLRN). Add platelets to calibrator well
      • Put plate in instrument, prepare Fluca buffer and start reaction (add 20 ul Fluca/well) 5 minutes after putting plate into instrument.
    Example 18
  • Analysis of Protein Generated from Transient Transfections
  • For analysis of protein from transient transfections, conditioned media from transfections of pSYN-FVII-010, 011, -013, -018, -003, -019-020 and -024 were subjected to protein A immunoprecipitation. Briefly, cell culture supernatant was mixed with approximately 50 ul of protein A-Sepharose 50% slurry and incubated at 4° C. with rocking for 1 hour, then centrifuged to pellet the protein A beads. Beads were washed twice by resuspending in 1 ml of PBS, spinning and aspirating. The beads were resuspended with sodium dodecylsulfate-polyacrylamide gel electrophoresis (SDS-PAGE) under reducing or nonreducing conditions, heated for 5 minutes at 100° C., spun down and loaded on SDS-PAGE gels and run according to standard protocols. Gels were transferred to nitrocellulose membranes and Western blots were performed to detect the Fc region or the FVII light chain. For Fc detection, the antibody used was a goat anti-human IgG (Fc specific)-horseradish peroxidase conjugate (Pierce ImmunoPure antibody, catalog #31413). For FVII light chain detection an anti light chain monoclonal antibody was used (Green Mountain, clone 6MA-219). The antibodies were diluted 1:15,000 (for Fc detection) or 1:200 (for light chain detection) in PBST (PBS with 0.1% Tween-20) with 5% nonfat dry milk and incubated with the membrane for 1 hour at room temperature. The membrane was then washed in PBST 3 times for 10 minutes and signal was detected by a chemiluminescent method for Fc detection. For FVII light chain detection, the membrane was further incubated for one hour in a solution containing HRP-labeled goat anti-mouse antibody (Southern Biotech, #1010-05) diluted 1:5000 in PBST. The membrane was also washed in PBST 3 times for 10 minutes and the signal was detected by a chemiluminescent method. Chemiluminescent detection was performed using ECL Plus Western Blotting Detection System (Amersham Biosciences catalog #RPN2132) according to manufacturer's protocol. Signal was visualized in a Storm 840 Phosphorimager (Molecular Devices).
  • The effect of PC5 on the processing of the proprotein convertase cleavage sites in the FVII-024 linker was tested as shown in FIG. 26. Under nonreducing conditions the effect of PC5 on cleavage site processing can not be detected because the FVII light chain-Fc and FVII heavy chain-Fc subunits remain linked via 2 disulfide bonds in the Fc region (lanes 2 and 3). Under reducing conditions we observed partial processing of FVII-024 generated from cells not cotransfected with PC5 (lane 4), but full processing when the cells were cotransfected with PC5 (lane 5). Full processing of the linker results in secretion of activated FVII (FVIIa), since a free N-terminus of the heavy chain is required and sufficient to activate the protein
  • Example 19
  • Cleavage of FVII-039 and FVII-040 by FXIa
  • The activation FVII-039 and FVII-040 by FXIa, as a result of the FXIa cleavage site inserted immediately upstream of the FVII light chain in these proteins, was characterized in vitro. A 1.5 μM solution of FVII-039, FVII-040 or FVII-011 (non activated) containing 15 nM FXIa in 50 mM Tris-HCl, 100 mM NaCl, 10 mM CaCl2, pH 7.4 was incubated for 5 or 20 minutes, and cleavage of FVIIFc was determined by SDS PAGE under reducing conditions, followed by SYPRO Ruby staining (Invitrogen). FXIa failed to cleave FVII-039, FVII-040 and nonactivated FVII-011, as shown in FIG. 28.
  • Example 20
  • Alternative Activatable FVIIFc Constructs
  • Failure of FXIa to cleave FVII-039 and FVII-040 may have been caused by inaccessibility of the protease to the cleavage site by steric hindrance. To improve FXIa or thrombin cleavage site accessibility, the sites will be placed upstream of the heavy chain in a structure where the heavy chain is not preceded by the light chain (Light chain-linker-Fc-scFclinker-FXIa/thrombin cleavage site-heavy chain-linker-Fc). In some embodiment, the heavy chain will comprise the I152V mutation. Once the best cleavage site is determined, a cscFc will be introduced so that the cell secretes a heterodimeric protein with the following structure: light chain-linker-Fc which is disulfide bonded to a second chain: FXIa/thrombin cleavage site-heavy chain-linker Fc.
  • In order to improve the level of activation observed with the constructs shown in FIG. 28, a second generation of activatable variants illustrated in FIG. 31 (similar in structure to those shown in FIG. 6E) was used to increase accessibility of the cleavage site. In this example, FXIa and thrombin cleavage sites were used for these constructs (See FIG. 31). Constructs were transiently transfected as previously described. FVIIFc was captured from media with protein A. FVIIFc bound to the beads was put in buffer and FXIa or thrombin was added and incubated. FVIIFc was eluted from beads with SDS PAGE loading buffer at 100 C for 5 minutes. The gel was loaded and western blot performed to detect Fc as previously described and the results are shown in FIG. 32. As shown in FIG. 32, both the thrombin and factor XIa cleavage sites could be cleaved to yield FVII heavy and light chain molecules in the presence of the appropriate enzyme. Best cleavage was observed for constructs FVII-060 and FVII-061, while no cleavage was observed for the negative control (FVII-062) in the presence of thrombin.
  • Example 21
  • A Factor VII Activatable Construct
  • The constructs depicted in FIG. 33 were (FVII-090, FVII-089 and FVII-062) were cloned, expressed and purificatied as previously described (these proteins do not require activation). Due to a cloning error a “VVGGA” sequence was inserted after the ALRPR thrombin cleavage sequence of FVII-060 and FVII-061, but while this insertion would be expected to affect the activity, it would not be predicted to affect the assessment of cleavage by thrombin in SDS-PAGE based assays. This sequence was removed in FVII-089 and FVII-090. To 125 nM of FVII-090, FVII-089, FVII-062, or plasma-derived FVII (FVII) increasing concentrations of thrombin were added and incubated for 10 minutes at 37° C. The mixture was run on SDS-PAGE gel to determine cleavage by thrombin (FIG. 33).
  • Generation of FVII light chain-Fc and FVII heavy chain-Fc was observed for FVII-089 and FVII-090 after incubation with thrombin. The fact that there was no cleavage of plasma-derived FVII or the FVII-062 negative control by thrombin shows specificity. No significant difference in cleavage efficiency was observed for FVII-089 and FVII-090.
  • Thrombin generation assays were used to measure activity of activatable variant FVII-090. A thrombin generation assays in FVIII-deficient platelet-rich plasma was performed as previously described, but replacing clotting factors and platelets with FVIII-deficient platelet-rich plasma. The results depicted in FIG. 34 are from an assay in which thrombin generation was activated with 50 nM of FVIIaFc. As shown in FIG. 34, thrombin is generated by 50 nM of FVIIaFc. The addition of 200 nM FVII-090 (not FVII-062, the negative control) to 50 nM of FVIIaFc results in a significant increase in thrombin generation, suggesting that FVI-090 becomes activated by thrombin generated by FVIIaFc. FVII-090 in the absence of any FVIIaFc activation also shows increased thrombin generation relative to FVII-062 in the absence of activation. This could be caused by activation of FVII-090 from small amounts of thrombin generated by residual levels of tissue factor or contact pathway activation.
  • Example 22
  • A High Specific Activity Factor VII Activatable Construct
  • To make the high specific activity version of Factor VII, FVII-100, amino acids 311 to 322 of the FVII mature sequence (LQQSRKVGDSPN, corresponding to the 170-loop) from FVII-090, were replaced with amino acids EASYPGK from the 170-loop of trypsin. This substitution has been shown to confer high specific activity.
  • An additional high specific activity version of Factor VII, FVII-115, was constructed. In this version, the 170 loop is wild type, but there are three point mutations in the heavy chain of FVII, V158D, E296V and M298Q. FVII-100 and FVII-115 are illustrated in FIG. 41.
  • In a soluble tissue factor assay, the specific activity of FVII-011(wild type FVIIaFc) is 10,000 IU/mg. FVII-090 has a specific activity of 0.32 IU/mg, FVII-100 has a specific activity of 0.25 IU/mg, and FVII-115 has a specific activity of 14 IU/mg. Thus, each of the activatable forms (prior to activation by the appropriate enzyme) is essentially inactive in this assay.
  • In the context of activated FVII, such high specific activity variants have the potential to be more efficacious, but also to be more susceptible to inhibition by proteins such as antithrombin. This inhibition depends on FVIIa being active; therefore, high specific activity variants which are activatable (dosed as nonactive proteins) should be more resistant to antithrombin inhibition while having the potential to have high specific activity once activated at the site of injury.
  • The cleavage of purified FVII-090 and FVII-100 and 115 (high specific activity variants) by thrombin was tested as previously described. The results are shown in FIG. 35. SDS PAGE analysis showed how the 3 proteins were cleaved by thrombin with comparable efficiency. For FVII-100, FVII heavy chain-Fc and light chain Fc collapse in 1 band because a glycosylation site is removed from the heavy chain after insertion of the trypsin 170 loop, reducing the mass of the FVII HC-Fc band which therefore migrates faster on the gel and comigrates with the FVII LC-Fc band. Thrombin generation assays were used to measure activity of activatable variant FVII-090 and high specific activity variant FVII-100. As set forth previously herein, thrombin generation was tested in a reconstituted system with human platelets, Factor X, Factor V, prothrombin, antithrombin and tissue-factor pathway inhibitor. Activity was measured with or without 5 nM thrombin activation.
  • As shown in FIG. 36, activity of FVII-090 is enhanced in the presence of thrombin, suggesting activation of FVII-090 by thrombin. However, activity is significantly increased in the context of the high specific activity variant FVII-100 with thrombin activation. High activity with longer initiation time for FVII-100 in the absence of thrombin, suggests that residual levels of tissue factor, thrombin or contact pathway activation can generate enough thrombin to activate FVII-100 without exogenous addition of thrombin. FIG. 37 shows that similar results were obtained for the other high specific activity variant, FVII-115.
  • Example 23
  • Confirmation of Activity of Activatable Variants Using Various Assays
  • In this example, chromogenic assays were used to measure FVII activity. One of the assays used measures the amidolytic activity of FVIIaFc by measuring the cleavage of a chromogenic substrate by FVIIa. Another of these measures the FX activation activity by measuring the ability of FVIIa to activate FX, as determined by measuring levels of a chromogenic substrate that is cleaved by activated FX (FXa).
  • In amidolytic assays, the chromogenic substrate Chromozyme t-PA was used. FVIIa cleaves this substrate in a dose dependent manner. The substrate is also cleaved by thrombin, but the cleavage by thrombin can be inhibited by hirudin (data not shown).
  • As shown in FIG. 38, amidolytic activity of the activatable variants can be measured following thrombin activation and there is increased amidolytic activity for the high specific activity variants as compared to FVII-090. In these assays, after activation of the activatable molecule by thrombin, hirudin is added to inhibit thrombin cleavage of the chromogenic substrate. In this manner, the thrombin does not interfere with the ability to detect FVIIa activity.
  • The activation of FX by FVIIa is also enhanced in the high specific activity FVII activatable variants. To measure activation of FX by FVIIa, substrate S2765 was used. This chromogenic substrate is also recognized by FX. In the assay, 10 uM of FX was incubated with FVIIaFc for 15 minutes and the reaction was quenched with EDTA. FIG. 39 shows the results of the control experiment which demonstrates that FX activation by FVIIaFc can be detected.
  • The experiment shown in FIG. 40 shows that there is an increase in FX activation activity for the high specific activity activatable variant FVII-100. In this experiment, FVIIFc (100 nM) was activated with thrombin (100 nM) for 20 minutes at 37C. Hirudin was added to inhibit the thrombin. FX (10 uM) was added and incubated for 15 minutes at 37C, followed by EDTA to inhibit the reaction. S2765 substrate was added and FXa generation was detected by monitoring substrate cleavage.
  • Example 24
  • Monomeric Fc Molecules can Also be Synthesized in Activatable Form
  • Three monomeric constructs were made as shown in FIG. 41. In FVII-118, an ALRPR cleavage site was inserted between the light chain and heavy chain. In FVII-119, the sequence GGGGS-ALRPR was inserted between the light chain and heavy chain. For FVII-127, the construct was made like FVII-118, but with the same high specific activity mutation used in FVII-100. The specific activity of the non-activated purified forms of these constructs was tested in a soluble tissue factor assay and compared to FVII-011 (wild type FVIIaFc which had an activity of 10,000 IU/mg). FVII-118 had an activity of 4.5 IU/mg and FVII-127 had an activity of 1.8 IU/mg, demonstrating that these molecules had essentially no activity in their activatable form.
  • Thrombin cleavage reactions of FVII-118, FVII-119 and FVII-090 followed by SDS
  • PAGE analysis were performed as previously described. As shown in FIG. 42, the cleavage site in an activatable construct can be cleaved in the context of both the monomer and heterodimer Fc molecules. In the figure, the decrease in the intensity of the nonactivated FVIIFc band with increasing thrombin concentration is similar for the FVII-118, FVII-119, and FVII-090 constructs.
  • Another activatable monomeric construct, FVII-127, was made and tested. FVII-127 has the backbone of FVII-118, but the same 170 loop substitution used in FVII-100 to confer high specific activity. As shown in FIG. 43, the activity of FVII-127 is significantly increased as compared to FVII-118 lacking the high specific activity amino acid substitution. High activity with longer initiation time for FVII-127 in the absence of thrombin, suggests that residual levels of tissue factor, thrombin or contact pathway activation can generate enough thrombin to activate FVII-127 without exogenous addition of thrombin. FVII-127 activity is accelerated by thrombin.
  • Example 25
  • FVIIaFc Variants Targeted to the Active Form of GPIIbIIIa
  • In this example the constructs illustrated in FIG. 44A were cloned, transiently expressed, purified and activated as previously described. FVII-066 was cotrasfected with PC5 to fully process the cscFc linker, described in the protein sequence, connecting the first Fc moiety to the platelet targeting moiety. These constructs employed the targeting moiety SCE5, a scFv against the active conformation of GPIIbIIIa. SCE5 has been shown to crossreact with mouse and human receptor. The SCE5 targeting moiety was placed at the N-terminus (FVII-066) or C terminus (FVII-067) of the second Fc moiety of FVIIaFc. In addition, the SCE5 was placed at the C-terminus of FVIIa (FVII-094). FVIIaFc (FVII-011) and NOVOSEVEN® were used as controls. As shown in FIG. 44B, these proteins were tested by thrombin generation assays in FVIII-deficient human plasma as previously described. These experiments revealed increased rates of thrombin generation for all the proteins containing the SCE5 targeting moiety relative to the controls. The highest rates of thrombin generation were observed for FVII-066, followed by FVII-094 and FVII-067, suggesting that the placement of the SCE5 targeting moiety can have a significant effect on the activity of the protein. Binding of these proteins to activated human platelets was determined by FACS assays as previously described (FIG. 44C). All the FVIIa proteins containing the SCE5 targeting moiety showed increased binding to platelets relative to the FVIIaFc control. This shows that attaching the SCE5 targeting moiety to FVIIa can increase its affininity from platelets. Since the SCE5 targeting moiety has been shown to interact with the mouse GPIIbIIIa receptor, FVII-066 was tested in thrombin generation assays using mouse FVIII-deficient platelet rich pasma, as well as in a reconstituted system using human purified components and platelets, as previously described (FIG. 29). We observed increased rates of thrombin generation for FVII-066 relative to the controls in both systems.
  • Example 26
  • Additional FVIIaFc Variants Targeted to the Active Form of GPIIbIIIa
  • In this example, construct FVII-027 illustrated in FIG. 12A was cloned, expressed (with PC5 cotransfection to fully process the cscFc linker, described in the protein sequence, connecting the first Fc moiety to the platelet targeting moiety), purified and activated as previously described. This construct employs the targeting moiety MB9, a scFv that has been shown to bind to the active conformation of GPIIbIlla. FACS assays were performed as previously described to assess binding to activated platelets, and FVII-027 was shown to bind to activated platelets with higher affinity than the FVII-011 control (FIG. 12B). Thrombin generation assays were performed with reconstituted purified human proteins and platelets as previously described (FIGS. 13A, 13B and 13C). FVII-027 showed increased rates of thrombin generation relative to the controls. FIG. 13D illustrates that FVII-027 has four times more activity than FVII-011 or NOVOSEVEN®, based on thrombin generation assays. FIGS. 14A and 14B illustrate that the enhanced platelet binding and thrombin generation activity of FVII-027 were abrogated by PAC1, an antibody that competes with MB9 for binding to the activated form of GPIIbIIIa, demonstrating the effects are mediated by the interaction of MB9 with the activated form of GPIIbIlla. The MB9 targeting moiety was also placed at the C-terminus of the second Fc moiety of FVIIaFc to generate FVII-037 illustrated in FIG. 15. Thombin generation assays in a FVIII-deficient reconstituted system with platelets revealed increased rates of thrombin generation for FVII-037 relative to the NOVOSEVEN® control (FIGS. 16A, 16B, and 16C).
  • Example 27
  • Factor VII constructs targeted to both activated and nonactivated platelets
  • In this example, the constructs illustrated in FIG. 45A were cloned, expressed, purified and activated as previously described. FVII-088 was cotransfected with PC5 to fully process the cscFc linker, described in the protein sequence, connecting the first Fc moiety to the platelet targeting moiety. FVII-088 and FVII-125 employed the AP3 targeting moiety, a scFv that binds to both active and nonactive conformations of human GPIIbIIIa. The results in FIG. 45B show thrombin generation assays in FVIII-deficient platelet-rich plasma, and both FVII-088 and FVII-125 showed increased rates of thrombin generation relative to the controls, demonstrating that targeting FVIIaFc or FVIIa to the active and nonactive conformation of GPIIbIlla results in increased activity. Binding of FVII-088 and FVIIaFc to activated human platelets was tested by FACS (FIG. 45C). These data reveal that FVII-088 binds to platelets with higher affinity than FVIIaFc (FVII-011), showing that the AP3 targeting moiety can increase the affinity of FVIIaFc for platelets.
  • Rotation Thromboelastometry (ROTEM®, Pentapharm GmbH, Munich, Germany) is another method to evaluate platelet-targeted FVIIa constructs, since it allows for the characterization of several coagulation parameters in whole blood (in the presence of platelets). The ability of FVII-088 and wild type recombinant FVIIaFc (rFVIIaFc) to form firm and stable clots was evaluated by ROTEM with Calcium Chloride as activator (NATEM) following manufacturer's recommendations. Hemophilia A blood from a human donor was spiked with FVIIFc to a final concentration of 100, 30 or 10 nM. The NATEM reaction was initiated by the addition of CaCl2. Coagulation parameters, including Clotting Time (relates to coagulation initiation time), Clot Formation Time (relates to rates of coagulation) and Alpha Angle (relates to rates of coagulation) were assessed as shown in FIG. 30. FVII-088 showed a significant reduction in the Clotting Time and Clot Forming Time and an increase in the alpha angle relative to wild type rFVIIaFc, consistent with enhanced coagulation kinetics for FVII-088. These data demonstrate that FVII-088 has enhanced activity relative to wild type FVIIaFc in agreement with the thrombin generation assay data.
  • Example 28
  • Use of Peptides for Targeting FVIIa to Platelets
  • The constructs illustrated in FIG. 46A were cloned, expressed, purified and activated as previously described. These proteins were made using peptides that bind to platelet receptor GPIb-alpha (found in both activated and nonactivated platelets), specifically PS4, OS1, and OS2 as platelet targeting moieties. In making these molecules the peptide was attached to either the N or the C terminus of the second Fc moiety of the construct. The FVII-044 construct employed the PS4 peptide attached to the C terminus of the second Fc moiety of the construct; FVII-045 employed the OS1 peptide attached to the C terminus of the second Fc moiety of the construct; and the FVII-046 construct employed the 0S2 molecule attached to the C terminus of the second Fc moiety of the construct. In contrast, the FVII-047 construct employed the PS4 peptide attached to the N terminus of the second Fc moiety of the construct; the FVII-048 molecule employed the 0S1 peptide attached to the N-terminus of the second Fc moiety of the construct; and the FVII-049 molecule employed the OS2 peptide attached to the N-terminus of the second Fc moiety of the construct. Thrombin generation assays were performed using FVIII-deficient platelet rich plasma as previously described. As shown in FIG. 46B, when the assay was performed with limiting concentrations of FVIIa, each of the FVII-044, FVII-045, and FVII-046 C-terminal fusion constructs exhibited enhanced thrombin generation as compared to the NOVOSEVEN® control. A similar result is shown in FIG. 47A for the N-terminal fusion constructs. FIG. 47B shows that the FVII-045 construct may be marginally better than the FVII-048 construct in this assay, but that again both the N and C terminal fusions are better than the NOVOSEVEN® control. In addition, there is a correlation between the published GPIb-alpha affinity for each peptide (FIG. 48) and the increase in the activity associated with that peptide when recombinantly fused to FVIIaFc. FIG. 48 shows the binding of FVII-049, FVII-048 and wild type FVIIaFc (FVII-011 control) to activated platelets as determined by FACS as well as the affinity for the targeting peptides reported in Bernard et al. Biochemistry 2008. 47:4674-4682. FACS data revealed increased affinity of FVII-045 and FVII-048 for platelets relative to the FVII-011 control
  • Example 29
  • An FVIIIFc Variant Targeted to the Active Form of GPIIbIIIa
  • The constructs illustrated in FIG. 49A were made as previously described. FVIII-041 is wild type FVIIIFc, while FVIII-108 has a SCE5 platelet targeting moiety at the N-terminus of the second Fc moiety. For expression, FVIII-108 was cotransfected with PC5 to fully process the cscFc linker, described in the protein sequence, connecting the first Fc moiety to the platelet targeting moiety. These proteins were tested in thrombin generation assays using FVIII deficient platelet rich plasma as previously described, but in addition the thrombin generation assay was also activated with tissue factor As shown in FIG. 49B, no significant improvement was seen using the targeted version of FVIIIFc. It is noteworthy that the thrombin generation assays described herein measure thrombin generation on the surface of platelets and, therefore, are an accurate measure of activity.
  • Example 30
  • Making and Testing a Version of FVII Targeted to Platelets that Lacks a Gla domain
  • In this example a version of FVIIaFc illustrated in FIG. 21 was generated. This protein has the MB9 scFv at the N-terminus and a deletion that removes the Gla domain. FVII-053 contains an RKRRKR sequence inserted between the light and heavy chain for intracellular activation. FVII-053 was transiently expressed (cotransfected with PC5 for processing of the RKRRKR sequence which results in activation of the protein) and purified as previously described. Thrombin generation assays with purified components and platelets reveal that FVII-053 has some activity (FIGS. 22A, 22B, 22C, and 22D), even though this activity is compromised relative to the FVII-011 control (FIG. 22D). Data in FIGS. 23A and 23B show how the PAC1 antibody, which competes with MB9 for GPIIbIIIa binding, inhibits thrombin generation activity associated with FVII-053, suggesting that platelet targeting is important for activity. Another construct identical to FVII-053, but without the RKRRKR insertion was generated (FVII-028) and tested in a Pk study in the nonactivated together with nonactivated FVII-011. As shown in FIG. 50, the terminal half-life of the targeted, Gla-less FVII-028 molecule was nearly three times longer (20.3 hours) than that of the FVII-011 control (7.1 hours), suggesting that removing the Gla domain increases the terminal half-life of FVIIFc.
  • Example 31. Platelet Targeted FIX Molecules
  • In this example, the FIX constructs illustrated in FIG. 51A were made and tested.
  • FIX-068 was cotransfected with PC5 to fully process the cscFc linker, described in the protein sequence, connecting the first Fc moiety to the platelet targeting moiety. FIX-068 has the SCE5 platelet targeting moiety at the N-terminus of the second Fc moiety, while FIX-088 has SCE5 at the C-terminus of the second Fc moiety. FIX-090 is a FIX construct without an Fc domain and has the SCE5 moiety attached at the C-terminus of the FIX protein. FIX-042 is a FIXFc as a single chain Fc without a targeting moiety and was made as a control. BENEFIX® (Pfizer) was also used as a control. To remove trace amounts of activated FIX (FIXa) from the BENEFIX® sample that cause misleading results in thrombin generation assays, the BENEFIX® sample was treated with the irreversible active site inhibitor glutamyl-glycyl-arginyl-chloromethylketone (Hematologic Technologies). BENEFIX® was incubated with an excess amount of the inhibitor for 180 minutes at room temperature. The sample was then dialyzed to remove unbound inhibitor. The treated BENEFIX® is hereafter referred to as BENEFIX®. The specific activities of the molecules made were FIX-042, 6 IU/nmol; FIX068, 5.1 IU/nmol; FIX-088, 3.5 IU/nmol; FIX-090, 13.8 IU/nmol, and BENEFIX®, 12 IU/nmol. When these constructs (FIX-068, FIX-088 and FIX-042) were tested in a thrombin generation assay in platelet-rich FIX-deficient plasma as shown in FIG. 51B, each of the targeted molecules had a higher activity than the FIX-042 control. FIG. 51C illustrates that both FIX-068 and FIX-088 have at least 4 times more activity than FIX-042 as measured by thrombin generation. Since the specific activity of FIX-042 is higher than FIX-068 and FIX-088, the increased activity observed in the thrombin generation assays may be underestimated, and therefore the increased activity by platelet targeting may be greater than 4-fold.
  • As shown in FIG. 52A, FIX-090 (which lacks an Fc) also shows increased activity relative to BENEFIX®, suggesting that targeting FIX to platelets in the absence of Fc also increases activity. FIG. 52B shows that the activity of FIX-090 is at least 4 times that of BENEFIX®. Since both FIX-090 and BENEFIX® have similar specific activities, the 4-fold increase in activity in thrombin generations assays must be caused by the platelet targeting effect.
  • Example 32
  • Use of Peptides for Targeting FIX to Platelets
  • In this example, the FIX-089 construct illustrated in FIG. 53A was cloned, transiently expressed and purified as previously described. The molecule comprises the 0S1 peptide, which binds to GPIb-alpha receptor, attached to the N-terminus of the second Fc moiety of the construct. The specific activity of the FIX-089 construct was 2.4 IU/nmol as compared to 6 IU/nmol for the control FIX-042 molecule.
  • As shown in FIG. 53B, the FIX-089 molecule is more active than the FIX-042 control in thrombin generation assays with FIX-platelet rich plasma; this is particularly evident at limiting concentrations of FIX. FIG. 53C demonstrates that FIX-089 is roughly 4-times stronger than FIX-042 as measured by thrombin generation, while having a lower specific activity. This further suggests that targeting to GPIb increases the activity of FIXFc.
  • Draft Sequence Listing
  • FVII-027 amino acid sequence. Signal sequence is shown in dotted underline, propeptide is double underlined, linker region connecting FVII or MB9 to Fc region is underlined, and linker with proprotein convertase processing sites is shown in bold
  • Figure US20210355473A1-20211118-C00001
    SFEEAREIFK DAERTKLFWI SYSDGDQCAS SPCQNGGSCK DQLQSYICFC LPAFEGRNCE
    THKDDQLICV NENGGCEQYC SDHTGTKRSC RCHEGYSLLA DGVSCTPTVE YPCGKIPILE
    KRNASKPQGR IVGGKVCPKG ECPWQVLLLV NGAQLCGGTL INTIWVVSAA HCFDKIKNWR
    NLIAVLGEHD LSEHDGDEQS RRVAQVIIPS TYVPGTTNHD IALLRLHQPV VLTDHVVPLC
    LPERTFSERT LAFVRFSLVS GWGQLLDRGQ TALELMVLNV PRLMTQDCLQ QSRKVGDSPN
    ITEYVFCAGY SDGSKDSCKG DSGGPHATHY RGTWYLTGIV SWGQGCATVG HFGVYTRVSQ
    YIEWLQKLMR SEPRPGVLLR APFPGGGGSG GGGSGGGGSG GGGSGGGGSG GGGSDKTHTC
    PPCPAPELLG GPSVFLFPPK PKDTLMISRT PEVTCVVVDV SHEDPEVKEN WYVDGVEVHN
    AKTKPREEQY NSTYRVVSVL TVLHQDWLNG KEYKCKVSNK ALPAPIEKTI SKAKGQPREP
    QVYTLPPSRD ELTKNQVSLT CLVKGFYPSD IAVEWESNGQ PENNYKTTPP VLDSDGSFFL
    YSKLTVDKSR WQQGNVFSCS VMHEALHNHY TQKSLSLSPG KRRRRSGGGG SGGGGSGGGG
    SGGGGSGGGG SGGGGSRKRR KRAEVQLVQS GAEVNKPGAS VKVSCKASGY TFTGYYMHWV
    RQAPGQGLEW MGWINPNSGG TNYAQKFQGW VTMTRDTSIS TAYMELSRLR SDDTAVYYCA
    RGRALYNRND RSPNWFDPWG QGTLVTVSSG SASAPTLKLE EGEFSEARVQ AVLTQPPSVS
    VAPGQTARIT CGGNNIGSKS VQWYQQKPGQ APVLVVYDDS DRPSGIPERF SGSNSGNMAT
    LTISRVEAGD EADYYCQVWD SSSDHVVFGG GTKLTVLGQP KAAPSVTLFP PSAAAGGGGS
    GGGGSGGGGS GGGGSGGGGS GGGGSDKTHT CPPCPAPELL GGPSVFLFPP KPKDTIMISR
    TPEVTCVVVD VSHEDPEVKF NWYVDGVEVH NAKTKPREEQ YNSTYRVVSV LTVLHQDWLN
    GKEYKCKVSN KALPAPIEKT ISKAKGQPRE PQVYTLPPSR KELTKNQVSL TCLVKGFYPS
    DIAVEWESNG QPENNYKTTP PVLDSDGSFF LYSKLTVDKS RWQQGNVFSC SVMHEALHNH
    YTQKSLSLSP GK
  • DNA sequence of FVII-027
    atggtctccc aggccctcag gctcctctgc cttctgcttg ggcttcaggg ctgcctggct
    gcagtcttcg taacccagga ggaagcccac ggcgtcctgc accggcgccg gcgcgccaac
    gcgttcctgg aggagctgcg gccgggctcc ctggagaggg agtgcaagga ggagcagtgc
    tccttcgagg aggcccggga gatcttcaag gacgcggaga ggacgaagct gttctggatt
    tcttacagtg atggggacca gtgtgcctca agtccatgcc agaatggggg ctcctgcaag
    gaccagctcc agtcctatat ctgcttctgc ctccctgcct tcgagggccg gaactgtgag
    acgcacaagg atgaccagct gatctgtgtg aacgagaacg gcggctgtga gcagtactgc
    agtgaccaca cgggcaccaa gcgctcctgt cggtgccacg aggggtactc tctgctggca
    gacggggtgt cctgcacacc cacagttgaa tatccatgtg gaaaaatacc tattctagaa
    aaaagaaatg ccagcaaacc ccaaggccga attgtggggg gcaaggtgtg ccccaaaggg
    gagtgtccat ggcaggtcct gttgttggtg aatggagctc agttgtgtgg ggggaccctg
    atcaacacca tctgggtggt ctccgcggcc cactgtttcg acaaaatcaa gaactggagg
    aacctgatcg cggtgctggg cgagcacgac ctcagcgagc acgacgggga tgagcagagc
    cggcgggtgg cgcaggtcat catccccagc acgtacgtcc cgggcaccac caaccacgac
    atcgcgctgc tccgcctgca ccagcccgtg gtcctcactg accatgtggt gcccctctgc
    ctgcccgaac ggacgttctc tgagaggacg ctggccttcg tgcgcttctc attggtcagc
    ggctggggcc agctgctgga ccgtggcgcc acggccctgg agctcatggt cctcaacgtg
    ccccggctga tgacccagga ctgcctgcag cagtcacgga aggtgggaga ctccccaaat
    atcacggagt acatgttctg tgccggctac tcggatggca gcaaggactc ctgcaagggg
    gacagtggag gcccacatgc cacccactac cggggcacgt ggtacctgac gggcatcgtc
    agctggggcc agggctgcgc aaccgtgggc cactttgggg tgtacaccag ggtctcccag
    tacatcgagt ggctgcaaaa gctcatgcgc tcagagccac gcccaggagt cctcctgcga
    gccccatttc ccggtggcgg tggctccggc ggaggtgggt ccggtggcgg cggatcaggt
    gggggtggat caggcggtgg aggttccggt ggcgggggat ccgacaaaac tcacacatgc
    ccaccgtgcc cagctccgga actcctgggc ggaccgtcag tcttcctctt ccccccaaaa
    cccaaggaca ccctcatgat ctcccggacc cctgaggtca catgcgtggt ggtggacgtg
    agccacgaag accctgaggt caagttcaac tggtacgtgg acggcgtgga ggtgcataat
    gccaagacaa agccgcggga ggagcagtac aacagcacgt accgtgtggt cagcgtcctc
    accgtcctgc accaggactg gctgaatggc aaggagtaca agtgcaaggt ctccaacaaa
    gccctcccag cccccatcga gaaaaccatc tccaaagcca aagggcagcc ccgagaacca
    caggtgtaca ccctgccccc atcccgggat gagctgacca agaaccaggt cagcctgacc
    tgcctggtca aaggcttcta tcccagcgac atcgccgtgg agtgggagag caatgggcag
    ccggagaaca actacaagac cacgcctccc gtgttggact ccgacggctc cttcttcctc
    tacagcaagc tcaccgtgga caagagcagg tggcagcagg ggaacgtctt ctcatgctcc
    gtgatgcatg aggctctgca caaccactac acgcagaaga gcctctccct gtctccgggt
    aaacggcgcc gccggagcgg tggcggcgga tcaggtgggg gtggatcagg cggtggaggt
    tccggtggcg ggggatccgg cggtggaggt tccggtgggg gtggatcaag gaagaggagg
    aagagggcgg aagtgcagct ggtgcagtct ggagctgagg tgaataagcc tggggcctca
    gtgaaggtct cctgcaaggc ttctggatac accttcaccg gctactatat gcactgggtg
    cgacaggccc ctggacaagg gcttgagtgg atgggatgga tcaaccctaa cagtggtggc
    acaaactatg cacagaagtt tcagggctgg gtcaccatga ccagggacac gtccatcagc
    accgcctaca tggagctgag caggctgaga tctgacgaca cggccgtgta ttactgtgcg
    agaggccgtg ctttgtataa ccggaacgac cggtccccca actggttcga cccctggggc
    cagggaaccc tggtcaccgt ctcctcaggg agtgcatccg ccccaaccct taagcttgaa
    gaaggtgaat tctcagaagc acgcgtacag gctgtgctga ctcagccgcc ctcggtgtca
    gtggccccag gacagacggc caggattacc tgtgggggaa acaacattgg aagtaaaagt
    gtgcagtggt accagcagaa gccaggccag gcccctgtgc tggtcgtcta tgatgatagc
    gaccggccct cagggatccc tgagcgattc tctggctcca actctgggaa catggccacc
    ctgaccatca gcagggtcga agccggggat gaggccgact attactgtca ggtgtgggat
    agtagtagtg atcatgtggt attcggcgga gggaccaagc tgaccgtcct aggtcagccc
    aaggctgccc cctcggtcac tctgttcccg ccgtccgcgg ccgctggtgg cggtggctcc
    ggcggaggtg ggtccggtgg cggcggatca ggtgggggtg gatcaggcgg tggaggttcc
    ggtggcgggg gatcagacaa aactcacaca tgcccaccgt gcccagcacc tgaactcctg
    ggaggaccgt cagtcttcct cttcccccca aaacccaagg acaccctcat gatctcccgg
    acccctgagg tcacatgcgt ggtggtggac gtgagccacg aagaccctga ggtcaagttc
    aactggtacg tggacggcgt ggaggtgcat aatgccaaga caaagccgcg ggaggagcag
    tacaacagca cgtaccgtgt ggtcagcgtc ctcaccgtcc tgcaccagga ctggctgaat
    ggcaaggagt acaagtgcaa ggtctccaac aaagccctcc cagcccccat cgagaaaacc
    atctccaaag ccaaagggca gccccgagaa ccacaggtgt acaccctgcc cccatcccgc
    gatgagctga ccaagaacca ggtcagcctg acctgcctgg tcaaaggctt ctatcccagc
    gacatcgccg tggagtggga gagcaatggg cagccggaga acaactacaa gaccacgcct
    cccgtgttgg actccgacgg ctccttcttc ctctacagca agctcaccgt ggacaagagc
    aggtggcagc aggggaacgt cttctcatgc tccgtgatgc atgaggctct gcacaaccac
    tacacgcaga agagcctctc cctgtctccg ggtaaatga
    Genscript-FVII-027-1 DNA sequence
    gaagagcctc tccctgtctc cgggtaaacg gcgccgccgg agcggtggcg gcggatcagg
    tgggggtgga tcaggcggtg gaggttccgg tggcggggga tccggcggtg gaggttccgg
    tgggggtgga tcaaggaaga ggaggaagag ggcggaagtg cagctggtgc agtctggagc
    tgaggtgaat aagcctgggg cctcagtgaa ggtctcctgc aaggcttctg gatacacctt
    caccggctac tatatgcact gggtgcgaca ggcccctgga caagggcttg agtggatggg
    atggatcaac cctaacagtg gtggcacaaa ctatgcacag aagtttcagg gctgggtcac
    catgaccagg gacacgtcca tcagcaccgc ctacatggag ctgagcaggc tgagatctga
    cgacacggcc gtgtattact gtgcgagagg ccgtgctttg tataaccgga acgaccggtc
    ccccaactgg ttcgacccct ggggccaggg aaccctggtc accgtctcct cagggagtgc
    atccgcccca acccttaagc ttgaagaagg tgaattc
    Genscript-FVII-026-2 DNA sequence
    gaattctcag aagcacgcgt acaggctgtg ctgactcagc cgccctcggt gtcagtggcc
    ccaggacaga cggccaggat tacctgtggg ggaaacaaca ttggaagtaa aagtgtgcag
    tggtaccagc agaagccagg ccaggcccct gtgctggtcg tctatgatga tagcgaccgg
    ccctcaggga tccctgagcg attctctggc tccaactctg ggaacatggc caccctgacc
    atcagcaggg tcgaagccgg ggatgaggcc gactattact gtcaggtgtg ggatagtagt
    agtgatcatg tggtattcgg cggagggacc aagctgaccg tcctaggtca gcccaaggct
    gccccctcgg tcactctgtt cccgccgtcc gcggccgctg gtggcggtgg ctccggcgga
    ggtgggtccg gtggcggcgg atcaggtggg ggtggatcag gcggtggagg ttccggtggc
    gggggatcag acaaaactca cacatgccca ccgtgcccag cacctgaact cctgggagga
    ccgtcagtct tcctcttccc cccaaaaccc aaggacaccc tcatgatctc ccggacccct
    gaggtcacat gcgtggtggt ggacgtgagc cacgaagacc ctgaggtcaa gttcaactgg
    tacgtggacg gcgtggaggt gcataatgcc aagacaaagc cgcgggagga gcagtacaac
    agcacgtacc gtgtggtcag cgtcctcacc gtcctgcacc aggactggct gaatggcaag
    gagtacaagt gcaaggtctc caacaaagcc ctcccagccc ccatcgagaa aaccatctcc
    aaagccaaag ggcagccccg agaaccacag gtgtacaccc tgcccccatc ccgcgatgag
    ctgaccaaga accaggtcag cctgacctgc ctggtcaaag gcttctatcc cagcgacatc
    gccgtggagt gggagagcaa tgggcagccg gagaacaact acaagaccac gcctcccgtg
    ttggactccg acggctcctt cttcctctac agcaagctca ccgtggacaa gagcaggtgg
    cagcagggga acgtcttctc atgctccgtg atgcatgagg ctctgcacaa ccactacacg
    cagaagagcc tctccctgtc tccgggtaaa tgagaattc
  • FVII-037 amino acid sequence. Signal sequence is shown in dotted underline, propeptide is double underlined, linker region connecting FVII or MB9 to Fc region is underlined, and linker connecting both Fcs sites is shown in bold
  • Figure US20210355473A1-20211118-C00002
    SFEEAREIFK DAERTKLFWI SYSDGDQCAS SPCQNGGSCK DQLQSYICFC LPAFEGRNCE
    HKDDQLICV NENGGCEDQYC SDHTGTKRSC RCHEGYSLLA DGVSCTPTVE YPCGKIPILE
    KRNASKPQGR IVGGKVCPKG ECPWQVLLLV NGAQLCGGTL INTIWVVSAA HCFDKIKNWR
    NLIAVLGEHD LSEHGDEQS RRVAQVIIPS TYVPGTTNHD IALLRLHQPV VLTDHVVPLC
    LPERTFSERT LAFVRFSLVS GWGQLLDRGA TALELMLLNV PRLMTQDCLQ QSRKVGDSPN
    ITEYMFCAGY SDGSKDSCKG DSGGPHATHY RGTWYLTGIV SWGQGCATVG HFGVYTRVSQ
    YIEWLQKLMR SEPRPGVLLR APFPGGGGSG GGGSGGGGSG GGGSGGGGSG GGGSDKTHTC
    PPCPAPELLG GPSVFLFPPK PKDTLMISRT PEVTCVVVDV SHEDPEVKFN WYDGVEVHN
    AKTKPREEQY NSTYRVVSVL TVLHQDWLNG KEYKCKVSNK ALPAPIEKTI SKAKGQPREP
    QVYTLPPSRD ELTKNQVSLT CLVKGFYPSD IAVEWESNGQ PENNYKTTPP VLDSDGSFFL
    YSKLTVDKSR WQQGNVFSCS VMHEALHNHY TQKSLSLSPG KGGGGSGGGG SGGGGSGGGG
    SDKTHTCPPC PAPELLGGPS VFLFPPKPKD TLMISRTPEV TCVVVDVSHE DPEVKFNWYV
    DGVEVHNAKT KPREEQYNST YRVVSVLTVL HQDWLNGKEY KCKVSNKALP APIEKTISKA
    KGQPREPQVY TLPPSRDELT KNQVSLTCLV KGFYPSDIAV EWESNGQPEN NYKTTPPVLD
    SDGSFFLYSK LTVDKSRWQQ GNVFSCSVMH EALHNHYTQK SLSLSPGKGG GGSGGGGSGG
    GGSGGGGSGG GGSGGGGSAE VQLVQSGAEV NKPGASVKVS CKASGYTFTG YYMHWVRQAP
    GQGLEWMGWI NPNSGGTNYA QKFQGWVTMT RDTSISTAYM ELSRLRSDDT AVYYCARGRA
    LYNRNDRSPN WFDPWGQGTL VTVSSGSASA PTLKLEEGEF SEARVQAVLT QPPSVSVAPG
    ATARITCGGN NIGSKSVQWY QQKPGQAPVL VVYDDSDRPS GIPERFSGSN SGNMATLTIS
    RVEAGDEADY YCQVWDSSSD HVVFGGGTKL TVLGQPKAAP SVTLFPPSAA A
  • FIX-037 DNA sequence
    atggtctccc aggccctcag gctcctctgc cttctgcttg
    ggcttcaggg ctgcctggct gcagtcttcg taacccagga
    ggaagcccac ggcgtcctgc accggcgccg gcgcgccaac
    gcgttcctgg aggagctgcg gccgggctcc ctggagaggg
    agtgcaagga ggagcagtgc tccttcgagg aggcccggga
    gatcttcaag gacgcggaga ggacgaagct gttctggatt
    tcttacagtg atggggacca gtgtgcctca agtccatgcc
    agaatggggg ctcctgcaag gaccagctcc agtcctatat
    ctgcttctgc ctccctgcct tcgagggccg gaactgtgag
    acgcacaagg atgaccagct gatctgtgtg aacgagaacg
    gcggctgtga gcagtactgc agtgaccaca cgggcaccaa
    gcgctcctgt cggtgccacg aggggtactc tctgctggca
    gacggggtgt cctgcacacc cacagttgaa tatccatgtg
    gaaaaatacc tattctagaa aaaagaaatg ccagcaaacc
    ccaaggccga attgtggggg gcaaggtgtg ccccaaaggg
    gagtgtccat ggcaggtcct gttgttggtg aatggagctc
    agttgtgtgg ggggaccctg atcaacacca tctgggtggt
    ctccgcggcc cactgtttcg acaaaatcaa gaactggagg
    aacctgatcg cggtgctggg cgagcacgac ctcagcgagc
    acgacgggga tgagcagagc cggcgggtgg cgcaggtcat
    catccccagc acgtacgtcc cgggcaccac caaccacgac
    atcgcgctgc tccgcctgca ccagcccgtg gtcctcactg
    accatgtggt gcccctctgc ctgcccgaac ggacgttctc
    tgagaggacg ctggccttcg tgcgcttctc attggtcagc
    ggctggggcc agctgctgga ccgtggcgcc acggccctgg
    agctcatggt cctcaacgtg ccccggctga tgacccagga
    ctgcctgcag cagtcacgga aggtgggaga ctccccaaat
    atcacggagt acatgttctg tgccggctac tcggatggca
    gcaaggactc ctgcaagggg gacagtggag gcccacatgc
    cacccactac cggggcacgt ggtacctgac gggcatcgtc
    agctggggcc agggctgcgc aaccgtgggc cactttgggg
    tgtacaccag ggtctcccag tacatcgagt ggctgcaaaa
    gctcatgcgc tcagagccac gcccaggagt cctcctgcga
    gccccatttc ccggtggcgg tggctccggc ggaggtgggt
    ccggtggcgg cggatcaggt gggggtggat caggcggtgg
    aggttccggt ggcgggggat ccgacaaaac tcacacatgc
    ccaccgtgcc cagctccgga actcctgggc ggaccgtcag
    tcttcctctt ccccccaaaa cccaaggaca ccctcatgat
    ctcccggacc cctgaggtca catgcgtggt ggtggacgtg
    agccacgaag accctgaggt caagttcaac tggtacgtgg
    acggcgtgga ggtgcataat gccaagacaa agccgcggga
    ggagcagtac aacagcacgt accgtgtggt cagcgtcctc
    accgtcctgc accaggactg gctgaatggc aaggagtaca
    agtgcaaggt ctccaacaaa gccctcccag cccccatcga
    gaaaaccatc tccaaagcca aagggcagcc ccgagaacca
    caggtgtaca ccctgccccc atcccgggat gagctgacca
    agaaccaggt cagcctgacc tgcctggtca aaggcttcta
    tcccagcgac atcgccgtgg agtgggagag caatgggcag
    ccggagaaca actacaagac cacgcctccc gtgttggact
    ccgacggctc cttcttcctc tacagcaagc tcaccgtgga
    caagagcagg tggcagcagg ggaacgtctt ctcatgctcc
    gtgatgcatg aggctctgca caaccactac acgcagaaga
    gcctctccct gtctccgggt aaaggtggcg gcggatcagg
    tgggggtgga tcaggcggtg gaggttccgg tggcggggga
    tcagacaaaa ctcacacatg cccaccgtgc ccagcacctg
    aactcctggg aggaccgtca gtcttcctct tccccccaaa
    acccaaggac accctcatga tctcccggac ccctgaggtc
    acatgcgtgg tggtggacgt gagccacgaa gaccctgagg
    tcaagttcaa ctggtacgtg gacggcgtgg aggtgcataa
    tgccaagaca aagccgcggg aggagcagta caacagcacg
    taccgtgtgg tcagcgtcct caccgtcctg caccaggact
    ggctgaatgg caaggagtac aagtgcaagg tctccaacaa
    agccctccca gcccccatcg agaaaaccat ctccaaagcc
    aaagggcagc cccgagaacc acaggtgtac accctgcccc
    catcccgcga tgagctgacc aagaaccagg tcagcctgac
    ctgcctggtc aaaggcttct atcccagcga catcgccgtg
    gagtgggaga gcaatgggca gccggagaac aactacaaga
    ccacgcctcc cgtgttggac tccgacggct ccttcttcct
    ctacagcaag ctcaccgtcg acaagagcag gtggcagcag
    gggaacgtct tctcatgctc cgtgatgcat gaggctctgc
    acaaccacta cacgcagaag agcctctccc tgtctccggg
    taaaggtggc ggtggctccg gcggaggtgg gtccggtggc
    ggcggatcag gtgggggtgg atcaggcggt ggaggttccg
    gtggcggggg atcagcggaa gtgcagctgg tgcagtctgg
    agctgaggtg aataagcctg gggcctcagt gaaggtctcc
    tgcaaggctt ctggatacac cttcaccggc tactatatgc
    actgggtgcg acaggcccct ggacaagggc ttgagtggat
    gggatggatc aaccctaaca gtggtggcac aaactatgca
    cagaagtttc agggctgggt caccatgacc agggacacgt
    ccatcagcac cgcctacatg gagctgagca ggctgagatc
    tgacgacacg gccgtgtatt actgtgcgag aggccgtgct
    ttgtataacc ggaacgaccg gtcccccaac tggttcgacc
    cctggggcca gggaaccctg gtcaccgtct cctcagggag
    tgcatccgcc ccaaccctta agcttgaaga aggtgaattt
    tcagaagcac gcgtacaggc tgtgctgact cagccgccct
    cggtgtcagt ggccccagga cagacggcca ggattacctg
    tgggggaaac aacattggaa gtaaaagtgt gcagtggtac
    cagcagaagc caggccaggc ccctgtgctg gtcgtctatg
    atgatagcga ccggccctca gggatccctg agcgattctc
    tggctccaac tctgggaaca tggccaccct gaccatcagc
    agggtcgaag ccggggatga ggccgactat tactgtcagg
    tgtgggatag tagtagtgat catgtggtat tcggcggagg
    gaccaagctg accgtcctag gtcagcccaa ggctgccccc
    tcggtcactc tgttcccgcc gtccgcggcc gcttga
  • FVII-053 amino acid sequence. Signal sequence is shown in dotted underline, linker region connecting FVII to Fc region is underlined, linker connecting both Fcs sites is shown in bold, and MB9 is italicized
  • Figure US20210355473A1-20211118-C00003
    APGQGLEWMG WINPNSGGTN YAQKFQGWVT MTRDTSISTA YMELSRLRSD DTAVYYCARG
    RALYNRNDRS PNWFDPWGQG TLVTVSSGSA SAPTLKLEEG EFSEARVQAV LTQPPSVSVA
    PGQTARITCG GNNIGSKSVQ WYQQKPGQAP VLVVYDDSDR PSGIPERFSG SNSGNMATLT
    ISRVEAGDEA DYYCQVWDSS SDHVVFGGGT KLTVLGQPKA APSVTLFPPS AAARTKLFWI
    SYSDGDQCAS SPCQNGGSCK DQLQSYICFC LPAFEGRNCE THKDDQLICV NENGGCEQYC
    SDHTGTKRSC RCHEGYSLLA DGVSCTPTVE YPCGKIPILE KRNASKPQGR RKRRKRIVGG
    KVCPKGECPW QVLLLVNGAQ LCGGTLINTI WVVSAAHCFD KIKNWRNLIA VLGEHDLSEH
    DGDEQSRRVA QVIIPSTYVP GTTNHDIALL RLHQPVVLTD HVVPLCLPER TFSERTLAFV
    RFSLVSGWGQ LLDRGATALE LMVLNVPRLM TQDCLQQSRK VGDSPNITEY MFCAGYSDGS
    KDSCKGDSGG PHATHYRGTW YLTGIVSWGQ GCATVGHFGV YTRVSQYIEW LQKLMRSEPR
    PGVLLRAPFP GGGGSGGGGS GGGGSGGGGS GGGGSGGGGS DKTHTCPPCP APELLGGPSV
    FLFPPKPKDT LMISRTPEVT CVVVDVSHED PEVKFNWYVD GVEVHNAKTK PREEQYNSTY
    RVVSVLTVLH QDWLNGKEYK CKVSNKALPA PIEKTISKAK GQPREPQVYT LPPSRDELTK
    NQVSLTCLVK GFYPSDIAVE WESNGQPENN YKTTPPVLDS DGSFFLYSKL TVDKSRWQQG
    NVFSCSVMHE ALHNHYTQKS LSLSPGKGGG GSGGGGSGGG GSGGGGSDKT HTCPPCPAPE
    LLGGPSVFVF PPKPKDTLMI SRTPEVTCVV VDVSHEDPEV KFNWYVDGVE VHNAKTKPRE
    EQYNSTYRVV SVLTVLHQDW LNGKEYKCKV SNKALPAPIE KTISKAKGQP REPQVYTLPP
    SRDELTKNQV SLTCLVKGFY PSDIAVEWES NGQPENNYKT TPPVLDSDGS FFLYSKLTVD
    KSRWQQGNVF SCSVMHEALTH NHYTQKSLSL SPGK
  • FVII-053 DNA sequence
    atggtctccc aggccctcag gctcctctgc cttctgcttg
    ggcttcaggg ctgcctggct gcggaagtgc agctggtgca
    gtctggagct gaggtgaata agcctggggc ctcagtgaag
    gtctcctgca aggcttctgg atacaccttc accggctact
    atatgcactg ggtgcgacag gcccctggac aagggcttga
    gtggatggga tggatcaacc ctaacagtgg tggcacaaac
    tatgcacaga agtttcaggg ctgggtcacc atgaccaggg
    acacgtccat cagcaccgcc tacatggagc tgagcaggct
    gagatctgac gacacggccg tgtattactg tgcgagaggc
    cgtgctttgt ataaccggaa cgaccggtcc cccaactggt
    tcgacccctg gggccaggga accctggtca ccgtctcctc
    agggagtgca tccgccccaa cccttaaact tgaagaaggt
    gaattttcag aagcacgcgt acaggctgtg ctgactcagc
    cgccctcggt gtcagtggcc ccaggacaga cggccaggat
    tacctgtggg ggaaacaaca ttggaagtaa aagtgtgcag
    tggtaccagc agaagccagg ccaggcccct gtgctggtcg
    tctatgatga tagcgaccgg ccctcaggga tccctgagcg
    attctctggc tccaactctg ggaacatggc caccctgacc
    atcagcaggg tcgaagccgg ggatgaggcc gactattact
    gtcaggtgtg ggatagtagt agtgatcatg tggtattcgg
    cggagggacc aagctgaccg tcctaggtca gcccaaggct
    gccccctcgg tcactctgtt cccgccgtcc gcggccgcta
    ggacgaagct gttctggatt tcttacagtg atggggacca
    gtgtgcctca agtccatgcc agaatggggg ctcctgcaag
    gaccagctcc agtcctatat ctgcttctgc ctccctgcct
    tcgagggccg gaactgtgag acgcacaagg atgaccagct
    gatctgtgtg aacgagaacg gcggctgtga gcagtactgc
    agtgaccaca cgggcaccaa gcgctcctgt cggtgccacg
    aggggtactc tctgctggca gacggggtgt cctgcacacc
    cacagttgaa tatccatgtg gaaaaatacc tattctagaa
    aaaagaaatg ccagcaaacc ccaaggccga aggaagagga
    ggaagaggat tgtggggggc aaggtgtgcc ccaaagggga
    gtgtccatgg caggtcctgt tgttggtgaa tggagctcag
    ttgtgtgggg ggaccctgat caacaccatc tgggtggtct
    ccgcggccca ctgtttcgac aaaatcaaga actggaggaa
    cctgatcgcg gtgctgggcg agcacgacct cagcgagcac
    gacggggatg agcagagccg gcgggtggcg caggtcatca
    tccccagcac gtacgtcccg ggcaccacca accacgacat
    cgcgctgctc cgcctgcacc agcccgtggt cctcactgac
    catgtggtgc ccctctgcct gcccgaacgg acgttctctg
    agaggacgct ggccttcgtg cgcttctcat tggtcagcgg
    ctggggccag ctgctggacc gtggcgccac ggccctggag
    ctcatggtcc tcaacgtgcc ccggctgatg acccaggact
    gcctgcagca gtcacggaag gtgggagact ccccaaatat
    cacggagtac atgttctgtg ccggctactc ggatggcagc
    aaggactcct gcaaggggga cagtggaggc ccacatgcca
    cccactaccg gggcacgtgg tacctgacgg gcatcgtcag
    ctggggccag ggctgcgcaa ccgtgggcca ctttggggtg
    tacaccaggg tctcccagta catcgagtgg ctgcaaaagc
    tcatgcgctc agagccacgc ccaggagtcc tcctgcgagc
    cccatttccc ggtggcggtg gctccggcgg aggtgggtcc
    ggtggcggcg gatcaggtgg gggtggatca ggcggtggag
    gttccggtgg cgggggatcc gacaaaactc acacatgccc
    accgtgccca gctccggaac tcctgggcgg accgtcagtc
    ttcctcttcc ccccaaaacc caaggacacc ctcatgatct
    cccggacccc tgaggtcaca tgcgtggtgg tggacgtgag
    ccacgaagac cctgaggtca agttcaactg gtacgtggac
    ggcgtggagg tgcataatgc caagacaaag ccgcgggagg
    agcagtacaa cagcacgtac cgtgtggtca gcgtcctcac
    cgtcctgcac caggactggc tgaatggcaa ggagtacaag
    tgcaaggtct ccaacaaagc cctcccagcc cccatcgaga
    aaaccatctc caaagccaaa gggcagcccc gagaaccaca
    ggtgtacacc ctgcccccat cccgggatga gctgaccaag
    aaccaggtca gcctgacctg cctggtcaaa ggcttctatc
    ccagcgacat cgccgtggag tgggagagca atgggcagcc
    ggagaacaac tacaagacca cgcctcccgt gttggactcc
    gacggctcct tcttcctcta cagcaagctc accgtggaca
    agagcaggtg gcagcagggg aacgtcttct catgctccgt
    gatgcatgag gctctgcaca accactacac gcagaagagc
    ctctccctgt ctccgggtaa aggtggcggc ggatcaggtg
    ggggtggatc aggcggtgga ggttccggtg gcgggggatc
    cgacaaaact cacacatgcc caccgtgccc agcacctgaa
    ctcctgggag gaccgtcagt cttcctcttc cccccaaaac
    ccaaggacac cctcatgatc tcccggaccc ctgaggtcac
    atgcgtggtg gtggacgtga gccacgaaga ccctgaggtc
    aagttcaact ggtacgtgga cggcgtggag gtgcataatg
    ccaagacaaa gccgcgggag gagcagtaca acagcacgta
    ccgtgtggtc agcgtcctca ccgtcctgca ccaggactgg
    ctgaatggca aggagtacaa gtgcaaggtc tccaacaaag
    ccctcccagc ccccatcgag aaaaccatct ccaaagccaa
    agggcagccc cgagaaccac aggtgtacac cctgccccca
    tcccgcgatg agctgaccaa gaaccaggtc agcctgacct
    gcctggtcaa aggcttctat cccagcgaca tcgccgtgga
    gtgggagagc aatgggcagc cggagaacaa ctacaagacc
    acgcctcccg tgttggactc cgacggctcc ttcttcctct
    acagcaagct caccgtggac aagagcaggt ggcagcaggg
    gaacgtcttc tcatgctccg tgatgcatga ggctctgcac
    aaccactaca cgcagaagag cctctccctg tctccgggta
    aatga
  • FVII-044 amino acid sequence. Signal sequence is shown in dotted underline, propeptide is double underlined, linker region connecting FVII or PS4 to Fc region is underlined, linker connecting both Fcs sites is shown in bold, and PS4 peptide is italicized
  • Figure US20210355473A1-20211118-C00004
    SFEEAREIFK DAERTKLFWI SYSDGDQCAS SPCQNGGSCK DQLQSYICFC LPAFEGRNCE
    THKDDQLICV NENGGCEQYC SDHTGTKRSC RCHEGYSLLA DGVSCTPTVE YPCGKIPILE
    KRNASKPQGR IVGGKVCPKG ECPWQVLLLV NGAQLCGGTL INTIWVVSAA HCFDKIKNWR
    NLIAVLGEHD LSEHDGDEQS RRVAQVIIPS TYVPGTTNHD IALLRLHQPV VLTDHVVPLC
    LPERTFSERT LAFVRFSLVS GWGQLLDRGA TALELMVLNV PRLMTQDCLQ QSRKVGDSPN
    ITEYMFCAGY SDGSKDSCKG DSGGPHATHY RGTWLYTGIV SWGQGCATVG HFGVYTRVSQ
    YIEWLQKLMR SEPRPGVLLR APFPGGGGSG GGGSGGGGSG GGGSGGGGSG GGGSDKTHTC
    PPCPAPELLG GPSVFLFPPK PKDTLMISRT PEVTCVVVDV SHEDPEVKFN WYVDGVEVHN
    AKTKPREEQY NSTYRVVSVL TVLHQDWLNG KEYKCKVSNK ALPAPIEKTI SKAKGQPREP
    QVYTLPPSRD ELTKNQVSLT CLVKGFYPSD IAVEWESNGQ PENNYKTTPP VLDSDGSFFL
    YSKLTVDKSR WQQGNVFSCS VMHEALHNHY TQKSLSLSPG KGGGGSGGGG SGGGGSGGGG
    SDKTHTCPPC PAPELLGGPS VFLFPPKPKD TLMISRTPEV TCVVVDVSHE DPEVKFNWYV
    DGVEVHNAKT KPREEQYNST YRVVSVLTVL HQDWLNGKEY KCKVSNKALP APIEKTISKA
    KGQPREPQVY TLPPSRDELT KNQVSLTCLV KGFYPSDIAV EWESNGQPEN NYKTTPPVLD
    SDGSFFLYSK LTVDKSRWQQ GNVFSCSVMH EALHNHYTQK SLSLSPGKGG GGSGGGGSGG
    GGSGGGGS AC TERWALHNLC GG
  • FVII-044 DNA sequence
    atggtctccc aggccctcag gctcctctgc cttctgcttg 
    ggcttcaggg ctgcctggct gcagtcttcg taacccagga 
    ggaagcccac ggcgtcctgc accggcgccg gcgcgccaac
    gcgttcctgg aggagctgcg gccgggctcc ctggagaggg 
    agtgcaagga ggagcagtgc tccttcgagg aggcccggga 
    gatcttcaag gacgcggaga ggacgaagct gttctggatt
    tcttacagtg atggggacca gtgtgcctca agtccatgcc 
    agaatggggg ctcctgcaag gaccagctcc agtcctatat 
    ctgcttctgc ctccctgcct tcgagggccg gaactgtgag
    acgcacaagg atgaccagct gatctgtgtg aacgagaacg 
    gcggctgtga gcagtactgc agtgaccaca cgggcaccaa 
    gcgctcctgt cggtgccacg aggggtactc tctgctggca
    gacggggtgt cctgcacacc cacagttgaa tatccatgtg 
    gaaaaatacc tattctagaa aaaagaaatg ccagcaaacc 
    ccaaggccga attgtggggg gcaaggtgtg ccccaaaggg
    gagtgtccat ggcaggtcct gttgttggtg aatggagctc 
    agttgtgtgg ggggaccctg atcaacacca tctgggtggt 
    ctccgcggcc cactgtttcg acaaaatcaa gaactggagg
    aacctgatcg cggtgctggg cgagcacgac ctcagcgagc 
    acgacgggga tgagcagagc cggcgggtgg cgcaggtcat 
    catccccagc acgtacgtcc cgggcaccac caaccacgac
    atcgcgctgc tccgcctgca ccagcccgtg gtcctcactg 
    accatgtggt gcccctctgc ctgcccgaac ggacgttctc 
    tgagaggacg ctggccttcg tgcgcttctc attggtcagc
    ggctggggcc agctgctgga ccgtggcgcc acggccctgg 
    agctcatggt cctcaacgtg ccccggctga tgacccagga 
    ctgcctgcag cagtcacgga aggtgggaga ctccccaaat
    atcacggagt acatgttctg tgccggctac tcggatggca 
    gcaaggactc ctgcaagggg gacagtggag gcccacatgc 
    cacccactac cggggcacgt ggtacctgac gggcatcgtc
    agctggggcc agggctgcgc aaccgtgggc cactttgggg 
    tgtacaccag ggtctcccag tacatcgagt ggctgcaaaa 
    gctcatgcgc tcagagccac gcccaggagt cctcctgcga
    gccccatttc ccggtggcgg tggctccggc ggaggtgggt 
    ccggtggcgg cggatcaggt gggggtggat caggcggtgg 
    aggttccggt ggcgggggat ccgacaaaac tcacacatgc
    ccaccgtgcc cagctccgga actcctgggc ggaccgtcag 
    tcttcctctt ccccccaaaa cccaaggaca ccctcatgat 
    ctcccggacc cctgaggtca catgcgtggt ggtggacgtg
    agccacgaag accctgaggt caagttcaac tggtacgtgg 
    acggcgtgga ggtgcataat gccaagacaa agccgcggga 
    ggagcagtac aacagcacgt accgtgtggt cagcgtcctc
    accgtcctgc accaggactg gctgaatggc aaggagtaca 
    agtgcaaggt ctccaacaaa gccctcccag cccccatcga 
    gaaaaccatc tccaaagcca aagggcagcc ccgagaacca
    caggtgtaca ccctgccccc atcccgggat gagctgacca 
    agaaccaggt cagcctgacc tgcctggtca aaggcttcta 
    tcccagcgac atcgccgtgg agtgggagag caatgggcag
    ccggagaaca actacaagac cacgcctccc gtgttggact 
    ccgacggctc cttcttcctc tacagcaagc tcaccgtgga 
    caagagcagg tggcagcagg ggaacgtctt ctcatgctcc
    gtgatgcatg aggctctgca caaccactac acgcagaaga 
    gcctctccct gtctccgggt aaaggtggcg gcggatcagg 
    tgggggtgga tcaggcggtg gaggttccgg tggcggggga
    tcagacaaaa ctcacacatg cccaccgtgc ccagcacctg 
    aactcctggg aggaccgtca gtcttcctct tccccccaaa 
    acccaaggac accctcatga tctcccggac ccctgaggtc
    acatgcgtgg tggtggacgt gagccacgaa gaccctgagg 
    tcaagttcaa ctggtacgtg gacggcgtgg aggtgcataa 
    tgccaagaca aagccgcggg aggagcagta caacagcacg
    taccgtgtgg tcagcgtcct caccgtcctg caccaggact 
    ggctgaatgg caaggagtac aagtgcaagg tctccaacaa 
    agccctccca gcccccatcg agaaaaccat ctccaaagcc
    aaagggcagc cccgagaacc acaggtgtac accctgcccc 
    catcccgcga tgagctgacc aagaaccagg tcagcctgac 
    ctgcctggtc aaaggcttct atcccagcga catcgccgtg
    gagtgggaga gcaatgggca gccggagaac aactacaaga 
    ccacgcctcc cgtgttggac tccgacggct ccttcttcct 
    ctacagcaag ctcaccgtcg acaagagcag gtggcagcag
    gggaacgtct tctcatgctc cgtgatgcat gaggctctgc 
    acaaccacta cacgcagaag agcctctccc tgtctccggg 
    taaaggtggc ggcggatcag gtgggggtgg atcaggcggt
    ggaggttccg gtggcggggg atcagcctgc accgagcggt 
    gggccctgca caacctgtgc ggcgggtga
  • FVII-045 amino acid sequence. Signal sequence is shown in dotted underline, propeptide is double underlined, linker region connecting FVII or OS1 to Fc region is underlined, linker connecting both Fcs sites is shown in bold, and OS1 peptide is italicized
  • Figure US20210355473A1-20211118-C00005
    SFEEAREIFK DAERTKLFWI SYSDGDQCAS SPCQNGGSCK KQLQSYICFC LPAFEGRNCE
    THKDDQLICV NENGGCEQYC SDHTGTKRSC RCHEGYSLLA DGVSCTPTVE YPCGKIPILE
    KRNASKPQGR IVGGKVCPKG ECPWQVLLLV NGAQLCGGTL INTIWVVSAA HCFDKIKNWR
    NLIAVLGEHD LSEHDGDEQS RRVAQVIIPS TYVPGTTNHD IALLRLHQPV VLTDHVVPLC
    LPERTFSERT LAFVRFSLVS GWGQLLDRGA TALELMVLNV PRLMTQDCLQ QSRKVGDSPN
    ITEYMFCAGY SDGSKDSCKG DSGGPHATHY RGTWYLTGIV SWGQGCATVG HFGVYTRVSQ
    YIEWLQKLMR SEPRPGVLLR APFPGGGGSG GGGSGGGGSG GGGSGGGGSG GGGSDKTHTC
    PPCPAPELLG GPSVFLFPPK PKDTLMISRT PEVTCVVVDV SHEDPEVKFN WYVDGVEVHN
    AKTKPREEQY NSTYRVVSVL TVLHQDWLNG KEYKCKVSNK ALPAPIEKTI SKAKGQPREP
    QVYTLPPSRD ELTKNQVSLT CLVKGFYPSD IAVEWESNGQ PENNYKTTPP VLDSDGSFFL
    YSKLTVDKSR WQQGNVFSCS VMHEALHNHY TQKSLSLSPG KGGGGSGGGG SGGGGSGGGG
    SDKTHTCPPC PAPELLGGPS VFLFPPKPKD TLMISRTPEV TCVVVDVSHE DPEVKFNWYV
    DGVEVHNAKT KPREEQYNST YRVVSVLTVL HQDWLNGKEY KCKVSVNKALP APIEKTISKA
    KGQPREPQVY TLPPSRDELT KNQVSLTCLV KGFYPSDIAV EWESNGQPEN NYKTTPPVLD
    SDGSFFLYSK LTVDKSRWQQ GNVFSCSVMH EALHNHYTQK SLSLSPGKGG GGSGGGGSGG
    GGSGGGGSAC TERMALHNLC GG
  • FVII-045 DNA sequence
    atggtctccc aggccctcag gctcctctgc cttctgcttg
    ggcttcaggg ctgcctggct gcagtcttcg taacccagga
    ggaagcccac ggcgtcctgc accggcgccg gcgcgccaac
    gcgttcctgg aggagctgcg gccgggctcc ctggagaggg
    agtgcaagga ggagcagtgc tccttcgagg aggcccggga
    gatcttcaag gacgcggaga ggacgaagct gttctggatt
    tcttacagtg atggggacca gtgtgcctca agtccatgcc
    agaatggggg ctcctgcaag gaccagctcc agtcctatat
    ctgcttctgc ctccctgcct tcgagggccg gaactgtgag
    acgcacaagg atgaccagct gatctgtgtg aacgagaacg
    gcggctgtga gcagtactgc agtgaccaca cgggcaccaa
    gcgctcctgt cggtgccacg aggggtactc tctgctggca
    gacggggtgt cctgcacacc cacagttgaa tatccatgtg
    gaaaaatacc tattctagaa aaaagaaatg ccagcaaacc
    ccaaggccga attgtggggg gcaaggtgtg ccccaaaggg
    gagtgtccat ggcaggtcct gttgttggtg aatggagctc
    agttgtgtgg ggggaccctg atcaacacca tctgggtggt
    ctccgcggcc cactgtttcg acaaaatcaa gaactggagg
    aacctgatcg cggtgctggg cgagcacgac ctcagcgagc
    acgacgggga tgagcagagc cggcgggtgg cgcaggtcat
    catccccagc acgtacgtcc cgggcaccac caaccacgac
    atcgcgctgc tccgcctgca ccagcccgtg gtcctcactg
    accatgtggt gcccctctgc ctgcccgaac ggacgttctc
    tgagaggacg ctggccttcg tgcgcttctc attggtcagc
    ggctggggcc agctgctgga ccgtggcgcc acggccctgg
    agctcatggt cctcaacgtg ccccggctga tgacccagga
    ctgcctgcag cagtcacgga aggtgggaga ctccccaaat
    atcacggagt acatgttctg tgccggctac tcggatggca
    gcaaggactc ctgcaagggg gacagtggag gcccacatgc
    cacccactac cggggcacgt ggtacctgac gggcatcgtc
    agctggggcc agggctgcgc aaccgtgggc cactttgggg
    tgtacaccag ggtctcccag tacatcgagt ggctgcaaaa
    gctcatgcgc tcagagccac gcccaggagt cctcctgcga
    gccccatttc ccggtggcgg tggctccggc ggaggtgggt
    ccggtggcgg cggatcaggt gggggtggat caggcggtgg
    aggttccggt ggcgggggat ccgacaaaac tcacacatgc
    ccaccgtgcc cagctccgga actcctgggc ggaccgtcag
    tcttcctctt ccccccaaaa cccaaggaca ccctcatgat
    ctcccggacc cctgaggtca catgcgtggt ggtggacgtg
    agccacgaag accctgaggt caagttcaac tggtacgtgg
    acggcgtgga ggtgcataat gccaagacaa agccgcggga
    ggagcagtac aacagcacgt accgtgtggt cagcgtcctc
    accgtcctgc accaggactg gctgaatggc aaggagtaca
    agtgcaaggt ctccaacaaa gccctcccag cccccatcga
    gaaaaccatc tccaaagcca aagggcagcc ccgagaacca
    caggtgtaca ccctgccccc atcccgggat gagctgacca
    agaaccaggt cagcctgacc tgcctggtca aaggcttcta
    tcccagcgac atcgccgtgg agtgggagag caatgggcag
    ccggagaaca actacaagac cacgcctccc gtgttggact
    ccgacggctc cttcttcctc tacagcaagc tcaccgtgga
    caagagcagg tggcagcagg ggaacgtctt ctcatgctcc
    gtgatgcatg aggctctgca caaccactac acgcagaaga
    gcctctccct gtctccgggt aaaggtggcg gcggatcagg
    tgggggtgga tcaggcggtg gaggttccgg tggcggggga
    tcagacaaaa ctcacacatg cccaccgtgc ccagcacctg
    aactcctggg aggaccgtca gtcttcctct tccccccaaa
    acccaaggac accctcatga tctcccggac ccctgaggtc
    acatgcgtgg tggtggacgt gagccacgaa gaccctgagg
    tcaagttcaa ctggtacgtg gacggcgtgg aggtgcataa
    tgccaagaca aagccgcggg aggagcagta caacagcacg
    taccgtgtgg tcagcgtcct caccgtcctg caccaggact
    ggctgaatgg caaggagtac aagtgcaagg tctccaacaa
    agccctccca gcccccatcg agaaaaccat ctccaaagcc
    aaagggcagc cccgagaacc acaggtgtac accctgcccc
    catcccgcga tgagctgacc aagaaccagg tcagcctgac
    ctgcctggtc aaaggcttct atcccagcga catcgccgtg
    gagtgggaga gcaatgggca gccggagaac aactacaaga
    ccacgcctcc cgtgttggac tccgacggct ccttcttcct
    ctacagcaag ctcaccgtcg acaagagcag gtggcagcag
    gggaacgtct tctcatgctc cgtgatgcat gaggctctgc
    acaaccacta cacgcagaag agcctctccc tgtctccggg
    taaaggtggc ggcggatcag gtgggggtgg atcaggcggt
    ggaggttccg gtggcggggg atcagcctgc accgagcgga
    tggccctgca caacctgtgc ggcgggtga
  • FVII-046 amino acid sequence. Signal sequence is shown in dotted underline, propeptide is double underlined, linker region connecting FVII or OS2 to Fc region is underlined, linker connecting both Fcs sites is shown in bold, and OS2 peptide is italicized
  • Figure US20210355473A1-20211118-C00006
    SFEEAREIFK DAERTKLFWI SYSDGDQCAS SPCQNGGSCK DQLQSYICFC LPAFEGRNCE
    THKDDQLICV NENGGCEQYC SDHTGTKRSC RCHEGYSLLA DGVSCTPTVE YPCGKIPILE
    KRNASKPQGR IVGGKVCPKG ECPWQVLLLV NGAQLCGGTL INTIWVVSAA HCFDKIKNWR
    NLIAVLGEHD LSEHDGDEQS RRVAQVIIPS TYVPGTTNHD IALLRLHQPV VLTDHVVPLC
    LPERTFSERT LAFVRFSLVS GWGQLLDRGA TALELMVLNV PRLMTQDCLQ QSRKVGDSPN
    ITEYMFCAGY SDGSKDSCKG DSGGPHATHY RGTWYLTGIV SWGQGCATVG HFGVYTRVSQ
    YIEWLQKLMR SEPRPGVLLR APFPGGGGSG GGGSGGGGSG GGGSGGGGSG GGGSDKTHTC
    PPCPAPELLG GPSVFLFPPK PKDTLMISRT PEVTCVVVDV SHEDPEVKFN WYVDGVEVHN
    AKTKPREEQY NSTYRVVSVL TVLHQDWLNG KEYKCKVSNK ALPAPIEKTI SKAKGQPREP
    QVYTLPPSRD ELTKNQVSLT CLVKGFYPSD IAVEWESNGQ PENNYKTTPP VLDSDGSFFL
    YSKLTVDKSR WQQGNVFSCS VMHEALHNHY TQKSLSLSPG KGGGGSGGGG SGGGGSGGGG
    SDKTHTCPPC PAPELLGGPS VFLFPPKPKD TLMISRTPEV TCVVVDVSHE DPEVKFNWYV
    DGVEVHNAKT KPREEQYNST YRVVSVLTVL HQDWLNGKEY KCKVSNKALP APIEKTISKA
    KGQPREPQVY TLPPSRDELT KNQVSLTCLV KGFYPSDIAV EWESNGQPEN NYKTTPPVLD
    SDGSFFLYSK LTVDKSRWQQ GNVFSCSVMH EALHNHYTQK SLSLSPGKGG GGSGGGGSGG
    GGSGGGGS AC TERDALHNLC GG
  • FVII-046 DNA sequence
    atggtctccc aggccctcag gctcctctgc cttctgcttg 
    ggcttcaggg ctgcctggct gcagtcttcg taacccagga 
    ggaagcccac ggcgtcctgc accggcgccg gcgcgccaac
    gcgttcctgg aggagctgcg gccgggctcc ctggagaggg 
    agtgcaagga ggagcagtgc tccttcgagg aggcccggga 
    gatcttcaag gacgcggaga ggacgaagct gttctggatt
    tcttacagtg atggggacca gtgtgcctca agtccatgcc 
    agaatggggg ctcctgcaag gaccagctcc agtcctatat 
    ctgcttctgc ctccctgcct tcgagggccg gaactgtgag
    acgcacaagg atgaccagct gatctgtgtg aacgagaacg 
    gcggctgtga gcagtactgc agtgaccaca cgggcaccaa 
    gcgctcctgt cggtgccacg aggggtactc tctgctggca
    gacggggtgt cctgcacacc cacagttgaa tatccatgtg 
    gaaaaatacc tattctagaa aaaagaaatg ccagcaaacc 
    ccaaggccga attgtggggg gcaaggtgtg ccccaaaggg
    gagtgtccat ggcaggtcct gttgttggtg aatggagctc 
    agttgtgtgg ggggaccctg atcaacacca tctgggtggt 
    ctccgcggcc cactgtttcg acaaaatcaa gaactggagg
    aacctgatcg cggtgctggg cgagcacgac ctcagcgagc 
    acgacgggga tgagcagagc cggcgggtgg cgcaggtcat 
    catccccagc acgtacgtcc cgggcaccac caaccacgac
    atcgcgctgc tccgcctgca ccagcccgtg gtcctcactg 
    accatgtggt gcccctctgc ctgcccgaac ggacgttctc 
    tgagaggacg ctggccttcg tgcgcttctc attggtcagc
    ggctggggcc agctgctgga ccgtggcgcc acggccctgg 
    agctcatggt cctcaacgtg ccccggctga tgacccagga 
    ctgcctgcag cagtcacgga aggtgggaga ctccccaaat
    atcacggagt acatgttctg tgccggctac tcggatggca 
    gcaaggactc ctgcaagggg gacagtggag gcccacatgc 
    cacccactac cggggcacgt ggtacctgac gggcatcgtc
    agctggggcc agggctgcgc aaccgtgggc cactttgggg 
    tgtacaccag ggtctcccag tacatcgagt ggctgcaaaa 
    gctcatgcgc tcagagccac gcccaggagt cctcctgcga
    gccccatttc ccggtggcgg tggctccggc ggaggtgggt 
    ccggtggcgg cggatcaggt gggggtggat caggcggtgg 
    aggttccggt ggcgggggat ccgacaaaac tcacacatgc
    ccaccgtgcc cagctccgga actcctgggc ggaccgtcag 
    tcttcctctt ccccccaaaa cccaaggaca ccctcatgat 
    ctcccggacc cctgaggtca catgcgtggt ggtggacgtg
    agccacgaag accctgaggt caagttcaac tggtacgtgg 
    acggcgtgga ggtgcataat gccaagacaa agccgcggga 
    ggagcagtac aacagcacgt accgtgtggt cagcgtcctc
    accgtcctgc accaggactg gctgaatggc aaggagtaca 
    agtgcaaggt ctccaacaaa gccctcccag cccccatcga 
    gaaaaccatc tccaaagcca aagggcagcc ccgagaacca
    caggtgtaca ccctgccccc atcccgggat gagctgacca 
    agaaccaggt cagcctgacc tgcctggtca aaggcttcta 
    tcccagcgac atcgccgtgg agtgggagag caatgggcag
    ccggagaaca actacaagac cacgcctccc gtgttggact 
    ccgacggctc cttcttcctc tacagcaagc tcaccgtgga 
    caagagcagg tggcagcagg ggaacgtctt ctcatgctcc
    gtgatgcatg aggctctgca caaccactac acgcagaaga 
    gcctctccct gtctccgggt aaaggtggcg gcggatcagg 
    tgggggtgga tcaggcggtg gaggttccgg tggcggggga
    tcagacaaaa ctcacacatg cccaccgtgc ccagcacctg 
    aactcctggg aggaccgtca gtcttcctct tccccccaaa 
    acccaaggac accctcatga tctcccggac ccctgaggtc
    acatgcgtgg tggtggacgt gagccacgaa gaccctgagg 
    tcaagttcaa ctggtacgtg gacggcgtgg aggtgcataa 
    tgccaagaca aagccgcggg aggagcagta caacagcacg
    taccgtgtgg tcagcgtcct caccgtcctg caccaggact 
    ggctgaatgg caaggagtac aagtgcaagg tctccaacaa 
    agccctccca gcccccatcg agaaaaccat ctccaaagcc
    aaagggcagc cccgagaacc acaggtgtac accctgcccc 
    catcccgcga tgagctgacc aagaaccagg tcagcctgac 
    ctgcctggtc aaaggcttct atcccagcga catcgccgtg
    gagtgggaga gcaatgggca gccggagaac aactacaaga 
    ccacgcctcc cgtgttggac tccgacggct ccttcttcct 
    ctacagcaag ctcaccgtcg acaagagcag gtggcagcag
    gggaacgtct tctcatgctc cgtgatgcat gaggctctgc 
    acaaccacta cacgcagaag agcctctccc tgtctccggg 
    taaaggtggc ggcggatcag gtgggggtgg atcaggcggt
    ggaggttccg gtggcggggg atcagcctgc accgagcggg 
    acgccctgca caacctgtgc ggcgggtga
  • FVII-047 amino acid sequence. Signal sequence is shown in dotted underline, propeptide is double underlined, linker region connecting FVII or PS4 to Fc regions is underlined, and PS4 peptide is italicized
  • Figure US20210355473A1-20211118-C00007
    SFEEAREIFK DAERTKLFWI SYSDGDQCAS SPCQNGGSCK DQLQSYICFC LPAFEGRNCE
    THKDDQLICV NENGGCEQYC SDHTGTKRSC RCHEGYSLLA DGVSCTPTVE YPCGKIPILE
    KRNASKPQGR IVGGKVCPKG ECPWQVLLLV NGAQLCGGTL INTIWVVSAA HCFDKIKNWR
    NLIAVLGEHD LSEHDGDEQS RRVAQVIIPS TYVPGTTNHD IALLRLHQPV VLTDHVVPLC
    LPERTFSERT LAFVRFSLVS GWGQLLDRGA TALELMVLNV PRLMTQDCLQ QSRKVGDSPN
    ITEYMFCAGY SDGSKDSCKG DSGGPHATHY RGTWYLTGIV SWGQGCATVG HFGVYTRVSQ
    YIEWLQKLMR SEPRPGVLLR APFPGGGGSG GGGSGGGGSG GGGSGGGGSG GGGSDKTHTC
    PPCPAPELLG GPSVFLFPPK PKDTLMISRT PEVTCVVVDV SHEDPEVKFN WYDGVEVHN
    AKTKPREEQY NSTYRVVSVL TVLHQDWLNG KEYKCKVSNK ALPAPIEKTI SKAKGQPREP
    QVYTLPPSRD ELTKNQVSLT CLVKGFYPSD IAVEWESNGQ PENNYKTTPP VLDSDGSFFL
    YSKLTVDKSR WQQGNVFSCS VMHEALHNHY TQKSLSLSPG KGGGGSGGGG SGGGGSGGGG
    SGGGGSGGGG S ACTERWALH NLC GGGGSGG GGSGGGGSGG GGSGGGGSGG GGSDKTHTCP
    PCPAPELLGG PSVFLFPPKP KDTLMISRTP EVTCVVVDVS HEDPEVKFNW YVDGVEVHNA
    KTKPREEQYN STYRVVSVLT VLHQDWLNGK EYKCKVSNKA LPAPIEKTIS KAKGQPREPQ
    VYTLPPSRDE LTKNQVSLTC LVKGFYPSDI AVEWESNGQP ENNYKTTPPV LDSDGSFFLY
    SKLTVDKSRW QQGNVFSCSV MHEALHNHYT QKSLSLSPGK
  • FVII-047 DNA sequence
    atggtctccc aggccctcag gctcctctgc cttctgcttg 
    ggcttcaggg ctgcctggct gcagtcttcg taacccagga 
    ggaagcccac ggcgtcctgc accggcgccg gcgcgccaac
    gcgttcctgg aggagctgcg gccgggctcc ctggagaggg 
    agtgcaagga ggagcagtgc tccttcgagg aggcccggga 
    gatcttcaag gacgcggaga ggacgaagct gttctggatt
    tcttacagtg atggggacca gtgtgcctca agtccatgcc 
    agaatggggg ctcctgcaag gaccagctcc agtcctatat 
    ctgcttctgc ctccctgcct tcgagggccg gaactgtgag
    acgcacaagg atgaccagct gatctgtgtg aacgagaacg 
    gcggctgtga gcagtactgc agtgaccaca cgggcaccaa 
    gcgctcctgt cggtgccacg aggggtactc tctgctggca
    gacggggtgt cctgcacacc cacagttgaa tatccatgtg 
    gaaaaatacc tattctagaa aaaagaaatg ccagcaaacc 
    ccaaggccga attgtggggg gcaaggtgtg ccccaaaggg
    gagtgtccat ggcaggtcct gttgttggtg aatggagctc 
    agttgtgtgg ggggaccctg atcaacacca tctgggtggt 
    ctccgcggcc cactgtttcg acaaaatcaa gaactggagg
    aacctgatcg cggtgctggg cgagcacgac ctcagcgagc 
    acgacgggga tgagcagagc cggcgggtgg cgcaggtcat 
    catccccagc acgtacgtcc cgggcaccac caaccacgac
    atcgcgctgc tccgcctgca ccagcccgtg gtcctcactg 
    accatgtggt gcccctctgc ctgcccgaac ggacgttctc 
    tgagaggacg ctggccttcg tgcgcttctc attggtcagc
    ggctggggcc agctgctgga ccgtggcgcc acggccctgg 
    agctcatggt cctcaacgtg ccccggctga tgacccagga 
    ctgcctgcag cagtcacgga aggtgggaga ctccccaaat
    atcacggagt acatgttctg tgccggctac tcggatggca 
    gcaaggactc ctgcaagggg gacagtggag gcccacatgc 
    cacccactac cggggcacgt ggtacctgac gggcatcgtc
    agctggggcc agggctgcgc aaccgtgggc cactttgggg 
    tgtacaccag ggtctcccag tacatcgagt ggctgcaaaa 
    gctcatgcgc tcagagccac gcccaggagt cctcctgcga
    gccccatttc ccggtggcgg tggctccggc ggaggtgggt 
    ccggtggcgg cggatcaggt gggggtggat caggcggtgg 
    aggttccggt ggcgggggat ccgacaaaac tcacacatgc
    ccaccgtgcc cagctccgga actcctggga ggaccgtcag 
    tcttcctctt ccccccaaaa cccaaggaca ccctcatgat 
    ctcccggacc cctgaggtca catgcgtggt ggtggacgtg
    agccacgaag accctgaggt caagttcaac tggtacgtgg 
    acggcgtgga ggtgcataat gccaagacaa agccgcggga 
    ggagcagtac aacagcacgt accgtgtggt cagcgtcctc
    accgtcctgc accaggactg gctgaatggc aaggagtaca 
    agtgcaaggt ctccaacaaa gccctcccag cccccatcga 
    gaaaaccatc tccaaagcca aagggcagcc ccgagaacca
    caggtgtaca ccctgccccc atcccgggat gagctgacca 
    agaaccaggt cagcctgacc tgcctggtca aaggcttcta 
    tcccagcgac atcgccgtgg agtgggagag caatgggcag
    ccggagaaca actacaagac cacgcctccc gtgttggact 
    ccgacggctc cttcttcctc tacagcaagc tcaccgtcga 
    caagagcagg tggcagcagg ggaacgtctt ctcatgctcc
    gtgatgcatg aggctctgca caaccactac acgcagaaga 
    gcctctccct gtctccgggt aaaggcggtg gcggttcagg 
    tggaggaggg tcaggcggtg gtggatccgg cgggggcgga
    tccggtggcg gagggtcagg cggtggcgga tcagcctgca 
    ccgagcggtg ggccctgcac aacctgtgcg gtggcggtgg 
    ctccggcgga ggtgggtccg gtggcggcgg atcaggtggg
    ggtggatcag gcggtggagg ttccggtggc gggggatccg 
    acaaaactca cacatgccca ccgtgcccag caccggaact 
    cctgggcgga ccgtcagtct tcctcttccc cccaaaaccc
    aaggacaccc tcatgatctc ccggacccct gaggtcacat 
    gcgtggtggt ggacgtgagc cacgaagacc ctgaggtcaa 
    gttcaactgg tacgtggacg gcgtggaggt gcataatgcc
    aagacaaagc cgcgggagga gcagtacaac agcacgtacc 
    gtgtggtcag cgtcctcacc gtcctgcacc aggactggct 
    gaatggcaag gagtacaagt gcaaggtctc caacaaagcc
    ctcccagccc ccatcgagaa aaccatctcc aaagccaaag 
    ggcagccccg agaaccacag gtgtacaccc tgcccccatc 
    ccgggatgag ctgaccaaga accaggtcag cctgacctgc
    ctggtcaaag gcttctatcc cagcgacatc gccgtggagt 
    gggagagcaa tgggcagccg gagaacaact acaagaccac 
    gcctcccgtg ttggactccg acggctcctt cttcctctac
    agcaagctca ccgtggacaa gagcaggtgg cagcagggga 
    acgtcttctc atgctccgtg atgcatgagg ctctgcacaa 
    ccactacacg cagaagagcc tctccctgtc tccgggtaaa
    tga
  • FVII-048 amino acid sequence. Signal sequence is shown in dotted underline, propeptide is double underlined, linker region connecting FVII or OS1 to Fc regions is underlined, and OS1 peptide is italicized
  • Figure US20210355473A1-20211118-C00008
    SFEEAREIFK KAERTKLFWI SYSDGDQCAS SPCQNGGSCK DQLQSYICFC LPAFEGRNCE
    THKDDQLICV NENGGCEQYC SDHTGTKRSC RCHEGYSLLA DGVSCTPTVE YPCGKIPILE
    KRNASKPQGR IVGGKVCPKG ECPWQVLLLV NGAQLCGGTL INTIWVVSAA HCFDKIKNWR
    NLIAVLGEHD LSEHDGDEQS RRVAQVIIPS TYVPGTTNHD IALLRLHQPV VLTDHVVPLC
    LPERTFSERT LAFVRFSLVS GWGQLLDRGA TALELMVLNV PRLMTQDCLQ QSRKVGDSPN
    ITEYMFCAGY SDGSKDSCKG DSGGPHATHY RGTWYLTGIV SWGQGCATVG HFGVYTRVSQ
    YIEWLQKLMR SEPRPGVLLR APFPGGGGSG GGGSGGGGSG GGGSGGGGSG GGGSDKTHTC
    PPCPAPELLG GPSVFLFPPK PKDTLMISRT PEVTCVVVDV SHEDPEVKFN WYVDGVEVHN
    AKTKPREEQY NSTYRVVSVL TVLHQDWLNG KEYKCKVSNK ALPAPIEKTI SKAKGQPREP
    QVYTLPPSRD ELTKNQVSLT CLVKGFYPSD IAVEWESNGQ PENNYKTTPP VLDSDGSFFL
    YSKLTVDKSR WQQGNVFSCS VMHEALHNHY TQKSLSLSPG KGGGGSGGGG SGGGGSGGGG
    SGGGGSGGGG S ACTERMALH NLC GGGGSGG GGSGGGGSGG GGSGGGGSGG GGSDKTHTCP
    PCPAPELLGG PSVFLFPPKP KDTLMISRTP EVTCVVVDVS HEDPEVKFNW YVDGVEVHNA
    KTKPREEQYN STYRVVSVLT VLHQDWLNGK EYKCKVSNKA LPAPIEKTIS KAKGQPREPQ
    VYTLPPSRDE LTKNQVSLTC LVKGFYPSDI AVEWESNGQP ENNYKTTPPV LDSDGSFFLY
    SKLTVDKSRW QQGNFVSCSV MHEALHNHYT QKSLSLSPGK
  • DNA sequence of FVII-048
    atggtctccc aggccctcag gctcctctgc cttctgcttg 
    ggcttcaggg ctgcctggct gcagtcttcg taacccagga 
    ggaagcccac ggcgtcctgc accggcgccg gcgcgccaac
    gcgttcctgg aggagctgcg gccgggctcc ctggagaggg 
    agtgcaagga ggagcagtgc tccttcgagg aggcccggga 
    gatcttcaag gacgcggaga ggacgaagct gttctggatt
    tcttacagtg atggggacca gtgtgcctca agtccatgcc 
    agaatggggg ctcctgcaag gaccagctcc agtcctatat 
    ctgcttctgc ctccctgcct tcgagggccg gaactgtgag
    acgcacaagg atgaccagct gatctgtgtg aacgagaacg 
    gcggctgtga gcagtactgc agtgaccaca cgggcaccaa 
    gcgctcctgt cggtgccacg aggggtactc tctgctggca
    gacggggtgt cctgcacacc cacagttgaa tatccatgtg 
    gaaaaatacc tattctagaa aaaagaaatg ccagcaaacc 
    ccaaggccga attgtggggg gcaaggtgtg ccccaaaggg
    gagtgtccat ggcaggtcct gttgttggtg aatggagctc 
    agttgtgtgg ggggaccctg atcaacacca tctgggtggt 
    ctccgcggcc cactgtttcg acaaaatcaa gaactggagg
    aacctgatcg cggtgctggg cgagcacgac ctcagcgagc 
    acgacgggga tgagcagagc cggcgggtgg cgcaggtcat 
    catccccagc acgtacgtcc cgggcaccac caaccacgac
    atcgcgctgc tccgcctgca ccagcccgtg gtcctcactg 
    accatgtggt gcccctctgc ctgcccgaac ggacgttctc 
    tgagaggacg ctggccttcg tgcgcttctc attggtcagc
    ggctggggcc agctgctgga ccgtggcgcc acggccctgg  
    agctcatggt cctcaacgtg ccccggctga tgacccagga 
    ctgcctgcag cagtcacgga aggtgggaga ctccccaaat
    atcacggagt acatgttctg tgccggctac tcggatggca 
    gcaaggactc ctgcaagggg gacagtggag gcccacatgc 
    cacccactac cggggcacgt ggtacctgac gggcatcgtc
    agctggggcc agggctgcgc aaccgtgggc cactttgggg 
    tgtacaccag ggtctcccag tacatcgagt ggctgcaaaa 
    gctcatgcgc tcagagccac gcccaggagt cctcctgcga
    gccccatttc ccggtggcgg tggctccggc ggaggtgggt 
    ccggtggcgg cggatcaggt gggggtggat caggcggtgg 
    aggttccggt ggcgggggat ccgacaaaac tcacacatgc
    ccaccgtgcc cagctccgga actcctggga ggaccgtcag 
    tcttcctctt ccccccaaaa cccaaggaca ccctcatgat 
    ctcccggacc cctgaggtca catgcgtggt ggtggacgtg
    agccacgaag accctgaggt caagttcaac tggtacgtgg 
    acggcgtgga ggtgcataat gccaagacaa agccgcggga 
    ggagcagtac aacagcacgt accgtgtggt cagcgtcctc
    accgtcctgc accaggactg gctgaatggc aaggagtaca 
    agtgcaaggt ctccaacaaa gccctcccag cccccatcga 
    gaaaaccatc tccaaagcca aagggcagcc ccgagaacca
    caggtgtaca ccctgccccc atcccgggat gagctgacca 
    agaaccaggt cagcctgacc tgcctggtca aaggcttcta 
    tcccagcgac atcgccgtgg agtgggagag caatgggcag
    ccggagaaca actacaagac cacgcctccc gtgttggact 
    ccgacggctc cttcttcctc tacagcaagc tcaccgtcga 
    caagagcagg tggcagcagg ggaacgtctt ctcatgctcc
    gtgatgcatg aggctctgca caaccactac acgcagaaga 
    gcctctccct gtctccgggt aaaggcggtg gcggttcagg 
    tggaggaggg tcaggcggtg gtggatccgg cgggggcgga
    tccggtggcg gagggtcagg cggtggcgga tcagcctgca 
    ccgagcggat ggccctgcac aacctgtgcg gtggcggtgg 
    ctccggcgga ggtgggtccg gtggcggcgg atcaggtggg
    ggtggatcag gcggtggagg ttccggtggc gggggatccg 
    acaaaactca cacatgccca ccgtgcccag caccggaact 
    cctgggcgga ccgtcagtct tcctcttccc cccaaaaccc
    aaggacaccc tcatgatctc ccggacccct gaggtcacat 
    gcgtggtggt ggacgtgagc cacgaagacc ctgaggtcaa 
    gttcaactgg tacgtggacg gcgtggaggt gcataatgcc
    aagacaaagc cgcgggagga gcagtacaac agcacgtacc 
    gtgtggtcag cgtcctcacc gtcctgcacc aggactggct 
    gaatggcaag gagtacaagt gcaaggtctc caacaaagcc
    ctcccagccc ccatcgagaa aaccatctcc aaagccaaag 
    ggcagccccg agaaccacag gtgtacaccc tgcccccatc 
    ccgggatgag ctgaccaaga accaggtcag cctgacctgc
    ctggtcaaag gcttctatcc cagcgacatc gccgtggagt 
    gggagagcaa tgggcagccg gagaacaact acaagaccac 
    gcctcccgtg ttggactccg acggctcctt cttcctctac
    agcaagctca ccgtggacaa gagcaggtgg cagcagggga 
    acgtcttctc atgctccgtg atgcatgagg ctctgcacaa 
    ccactacacg cagaagagcc tctccctgtc tccgggtaaa
    tga
  • FVII-049 amino acid sequence. Signal sequence is shown in dotted underline, propeptide is double underlined, linker region connecting FVII or OS2 to Fc regions is underlined, and OS2 peptide is italicized
  • Figure US20210355473A1-20211118-C00009
    SFEEAREIFK DAERTKLFWI SYSDGDQCAS SPCQNGGSCK DQLQSYICFC LPAFEGRNCE
    THKDDQLICV NENGGCEQYC SDHTGTKRSC RCHEGYSLLA DGVSCTPTVE YPCGKIPILE
    KRNASKPQGR IVGGKVCPKG ECPWQVLLLV NGAQLCGGTL INTIWVVSAA HCFDKIKNWR
    NLIAVLGEHD LSEHDGDEQS RRVAQVIIPS TYVPGTTNHD IALLRLHQPV VLTDHVVPLC
    LPERTFSERT LAFVRFSLVS GWGQLLDRGA TALELMVLNV PRLMTQDCLQ QSRKVGDSPN
    ITEYMFCAGY SDGSKDSCKG DSGGPHATHY RGTWYLTGIV SWGQGCATVG HFGVYTRVSQ
    YIEWLQKLMR SEPRPGVLLR APFPGGGGSG GGGSGGGGSG GGGSGGGGSG GGGSDKTHTC
    PPCPAPELLG GPSVFLFPPK PKDTLMISRT PEVTCVVVDV SHEDPEVKFN WYVDGVEVHN
    AKTKPREEQY NSTYRVVSVL TVLHQDWLNG KEYKCKVSNK ALPAPIEKTI SKAKGQPREP
    QVYTLPPSRD ELTKNQVSLT CLVKGFYPSD IAVEWESNGQ PENNYKTTPP VLDSDGSFFL
    YSKLTVDKSR WQQGNVFSCS VMHEALHNHY TQKSLSLSPG KGGGGSGGGG SGGGGSGGGG
    SGGGGSGGGG S ACTERDALH NLC GGGGSGG GGSGGGGSGG GGSGGGGSGG GGSDKTHTCP
    PCPAPELLGG PSVFLFPPKP KDTLMISRTP EVTCVVVDVS HEDPEVKFNW YVDGVEVHNA
    KTKPREEQYN STYRVVSVLT VLHQDWLNGK EYKCKVSNKA LPAPIEKTIS KAKGQPREPQ
    VYTLPPSRDE LTKNQVSLTC LVKGFYPSDI AVEWESNGQP ENNYKTTPPV LDSDGSFFLY
    SKLTVDKSRW QQGNVFSCSV MHEALHNHYT QKSLSLSPGK
  • DNA sequence of FVII-049
    atggtctccc aggccctcag gctcctctgc cttctgcttg 
    ggcttcaggg ctgcctggct gcagtcttcg taacccagga 
    ggaagcccac ggcgtcctgc accggcgccg gcgcgccaac
    gcgttcctgg aggagctgcg gccgggctcc ctggagaggg 
    agtgcaagga ggagcagtgc tccttcgagg aggcccggga 
    gatcttcaag gacgcggaga ggacgaagct gttctggatt
    tcttacagtg atggggacca gtgtgcctca agtccatgcc 
    agaatggggg ctcctgcaag gaccagctcc agtcctatat 
    ctgcttctgc ctccctgcct tcgagggccg gaactgtgag
    acgcacaagg atgaccagct gatctgtgtg aacgagaacg 
    gcggctgtga gcagtactgc agtgaccaca cgggcaccaa 
    gcgctcctgt cggtgccacg aggggtactc tctgctggca
    gacggggtgt cctgcacacc cacagttgaa tatccatgtg 
    gaaaaatacc tattctagaa aaaagaaatg ccagcaaacc 
    ccaaggccga attgtggggg gcaaggtgtg ccccaaaggg
    gagtgtccat ggcaggtcct gttgttggtg aatggagctc 
    agttgtgtgg ggggaccctg atcaacacca tctgggtggt 
    ctccgcggcc cactgtttcg acaaaatcaa gaactggagg
    aacctgatcg cggtgctggg cgagcacgac ctcagcgagc 
    acgacgggga tgagcagagc cggcgggtgg cgcaggtcat 
    catccccagc acgtacgtcc cgggcaccac caaccacgac
    atcgcgctgc tccgcctgca ccagcccgtg gtcctcactg 
    accatgtggt gcccctctgc ctgcccgaac ggacgttctc 
    tgagaggacg ctggccttcg tgcgcttctc attggtcagc
    ggctggggcc agctgctgga ccgtggcgcc acggccctgg 
    agctcatggt cctcaacgtg ccccggctga tgacccagga 
    ctgcctgcag cagtcacgga aggtgggaga ctccccaaat
    atcacggagt acatgttctg tgccggctac tcggatggca 
    gcaaggactc ctgcaagggg gacagtggag gcccacatgc 
    cacccactac cggggcacgt ggtacctgac gggcatcgtc
    agctggggcc agggctgcgc aaccgtgggc cactttgggg 
    tgtacaccag ggtctcccag tacatcgagt ggctgcaaaa 
    gctcatgcgc tcagagccac gcccaggagt cctcctgcga
    gccccatttc ccggtggcgg tggctccggc ggaggtgggt 
    ccggtggcgg cggatcaggt gggggtggat caggcggtgg 
    aggttccggt ggcgggggat ccgacaaaac tcacacatgc
    ccaccgtgcc cagctccgga actcctggga ggaccgtcag 
    tcttcctctt ccccccaaaa cccaaggaca ccctcatgat 
    ctcccggacc cctgaggtca catgcgtggt ggtggacgtg
    agccacgaag accctgaggt caagttcaac tggtacgtgg 
    acggcgtgga ggtgcataat gccaagacaa agccgcggga 
    ggagcagtac aacagcacgt accgtgtggt cagcgtcctc
    accgtcctgc accaggactg gctgaatggc aaggagtaca 
    agtgcaaggt ctccaacaaa gccctcccag cccccatcga 
    gaaaaccatc tccaaagcca aagggcagcc ccgagaacca
    caggtgtaca ccctgccccc atcccgggat gagctgacca 
    agaaccaggt cagcctgacc tgcctggtca aaggcttcta 
    tcccagcgac atcgccgtgg agtgggagag caatgggcag
    ccggagaaca actacaagac cacgcctccc gtgttggact 
    ccgacggctc cttcttcctc tacagcaagc tcaccgtcga 
    caagagcagg tggcagcagg ggaacgtctt ctcatgctcc
    gtgatgcatg aggctctgca caaccactac acgcagaaga 
    gcctctccct gtctccgggt aaaggcggtg gcggttcagg 
    tggaggaggg tcaggcggtg gtggatccgg cgggggcgga
    tccggtggcg gagggtcagg cggtggcgga tcagcctgca 
    ccgagcggga cgccctgcac aacctgtgcg gtggcggtgg 
    ctccggcgga ggtgggtccg gtggcggcgg atcaggtggg
    ggtggatcag gcggtggagg ttccggtggc gggggatccg 
    acaaaactca cacatgccca ccgtgcccag caccggaact 
    cctgggcgga ccgtcagtct tcctcttccc cccaaaaccc
    aaggacaccc tcatgatctc ccggacccct gaggtcacat 
    gcgtggtggt ggacgtgagc cacgaagacc ctgaggtcaa 
    gttcaactgg tacgtggacg gcgtggaggt gcataatgcc
    aagacaaagc cgcgggagga gcagtacaac agcacgtacc 
    gtgtggtcag cgtcctcacc gtcctgcacc aggactggct 
    gaatggcaag gagtacaagt gcaaggtctc caacaaagcc
    ctcccagccc ccatcgagaa aaccatctcc aaagccaaag 
    ggcagccccg agaaccacag gtgtacaccc tgcccccatc 
    ccgggatgag ctgaccaaga accaggtcag cctgacctgc
    ctggtcaaag gcttctatcc cagcgacatc gccgtggagt 
    gggagagcaa tgggcagccg gagaacaact acaagaccac 
    gcctcccgtg ttggactccg acggctcctt cttcctctac
    agcaagctca ccgtggacaa gagcaggtgg cagcagggga 
    acgtcttctc atgctccgtg atgcatgagg ctctgcacaa 
    ccactacacg cagaagagcc tctccctgtc tccgggtaaa
    tga
  • FVII-011 amino acid sequence. Signal sequence is shown in dotted underline, propeptide is double underlined, Gla domain is italicized, linker region connecting FVII to Fc region is underlined, and linker connecting both Fcs sites is shown in bold
  • Figure US20210355473A1-20211118-C00010
    SFEEAREIFK DAERTKLFWI SYSDGDQCAS SPCQNGGSCK DQLQSYICFC LPAFEGRNCE
    THKDDQLICV NENGGCEQYC SDHTGTKRSC RCHEGYSLLA DGVSCTPTVE YPCGKIPILE
    KRNASKPQGR IVGGKVCPKG ECPWQVLLLV NGAQLCGGTL INTIWVVSAA HCFDKIKNWR
    NLIAVLGEHD LSEHDGDEQS RRVAQVIIPS TYVPGTTNHD IALLRLHQPV VLTDHVVPLC
    LPERTFSERT LAFVRFSLVS GWGQLLDRGA TALELMVLNV PRLMTQDCLQ QSRKVGDSPN
    ITEYMFCAGY SDGSKDSCKG DSGGPHATHY RGTWYLTGIV SWGQGCATVG HFGVYTRVSQ
    YIEWLQKLMR SEPRPGVLLR APFPGGGGSG GGGSGGGGSG GGGSGGGGSG GGGSDKTHTC
    PPCPAPELLG GPSVFLFPPK PKDTLMISRT PEVTCVVVDV SHEDPEVKFN WYVDGVEVHN
    AKTKPREEQY NSTYRVVSVL TVLHQDWLNG KEYKCKVSNK ALPAPIEKTI SKAKGQPREP
    QVYTLPPSRD ELTKNQVSLT CLVKGFYPSD IAVEWESNGQ PENNYKTTPP VLDSDGSFFL
    YSKLTVDKSR WQQGNVFSCS VMHEALHNHY TQKSLSLSPG KGGGGSGGGG SGGGGSGGGG
    SDKTHTCPPC PAPELLGGPS VFLFPPKPKD TLMISRTPEV TCVVVDVSHE DPEVKFNWYV
    DGVEVHNAKT KPREEQYNST YRVVSVLTVL HQDWLNGKEY KCKVSNKALP APIEKTISKA
    KGQPREPQVY TLPPSRDELT KNQVSLTCLV KGFYPSDIAV EWESNGQPEN NYKTTPPVLD
    SDGSFFLYSK LTVDKSRWQQ GNVFSCSVMH EALHNHYTQK SLSLSPGK
  • FVII-011 DNA sequence
    atggtctccc aggccctcag gctcctctgc cttctgcttg
    ggcttcaggg ctgcctggct gcagtcttcg taacccagga
    ggaagcccac ggcgtcctgc accggcgccg gcgcgccaac
    gcgttcctgg aggagctgcg gccgggctcc ctggagaggg
    agtgcaagga ggagcagtgc tccttcgagg aggcccggga
    gatcttcaag gacgcggaga ggacgaagct gttctggatt
    tcttacagtg atggggacca gtgtgcctca agtccatgcc
    agaatggggg ctcctgcaag gaccagctcc agtcctatat
    ctgcttctgc ctccctgcct tcgagggccg gaactgtgag
    acgcacaagg atgaccagct gatctgtgtg aacgagaacg
    gcggctgtga gcagtactgc agtgaccaca cgggcaccaa
    gcgctcctgt cggtgccacg aggggtactc tctgctggca
    gacggggtgt cctgcacacc cacagttgaa tatccatgtg
    gaaaaatacc tattctagaa aaaagaaatg ccagcaaacc
    ccaaggccga attgtggggg gcaaggtgtg ccccaaaggg
    gagtgtccat ggcaggtcct gttgttggtg aatggagctc
    agttgtgtgg ggggaccctg atcaacacca tctgggtggt
    ctccgcggcc cactgtttcg acaaaatcaa gaactggagg
    aacctgatcg cggtgctggg cgagcacgac ctcagcgagc
    acgacgggga tgagcagagc cggcgggtgg cgcaggtcat
    catccccagc acgtacgtcc cgggcaccac caaccacgac
    atcgcgctgc tccgcctgca ccagcccgtg gtcctcactg
    accatgtggt gcccctctgc ctgcccgaac ggacgttctc
    tgagaggacg ctggccttcg tgcgcttctc attggtcagc
    ggctggggcc agctgctgga ccgtggcgcc acggccctgg
    agctcatggt cctcaacgtg ccccggctga tgacccagga
    ctgcctgcag cagtcacgga aggtgggaga ctccccaaat
    atcacggagt acatgttctg tgccggctac tcggatggca
    gcaaggactc ctgcaagggg gacagtggag gcccacatgc
    cacccactac cggggcacgt ggtacctgac gggcatcgtc
    agctggggcc agggctgcgc aaccgtgggc cactttgggg
    tgtacaccag ggtctcccag tacatcgagt ggctgcaaaa
    gctcatgcgc tcagagccac gcccaggagt cctcctgcga
    gccccatttc ccggtggcgg tggctccggc ggaggtgggt
    ccggtggcgg cggatcaggt gggggtggat caggcggtgg
    aggttccggt ggcgggggat ccgacaaaac tcacacatgc
    ccaccgtgcc cagctccgga actcctgggc ggaccgtcag
    tcttcctctt ccccccaaaa cccaaggaca ccctcatgat
    ctcccggacc cctgaggtca catgcgtggt ggtggacgtg
    agccacgaag accctgaggt caagttcaac tggtacgtgg
    acggcgtgga ggtgcataat gccaagacaa agccgcggga
    ggagcagtac aacagcacgt accgtgtggt cagcgtcctc
    accgtcctgc accaggactg gctgaatggc aaggagtaca
    agtgcaaggt ctccaacaaa gccctcccag cccccatcga
    gaaaaccatc tccaaagcca aagggcagcc ccgagaacca
    caggtgtaca ccctgccccc atcccgggat gagctgacca
    agaaccaggt cagcctgacc tgcctggtca aaggcttcta
    tcccagcgac atcgccgtgg agtgggagag caatgggcag
    ccggagaaca actacaagac cacgcctccc gtgttggact
    ccgacggctc cttcttcctc tacagcaagc tcaccgtgga
    caagagcagg tggcagcagg ggaacgtctt ctcatgctcc
    gtgatgcatg aggctctgca caaccactac acgcagaaga
    gcctctccct gtctccgggt aaaggtggcg gcggatcagg
    tgggggtgga tcaggcggtg gaggttccgg tggcggggga
    tcagacaaaa ctcacacatg cccaccgtgc ccagcacctg
    aactcctggg aggaccgtca gtcttcctct tccccccaaa
    acccaaggac accctcatga tctcccggac ccctgaggtc
    acatgcgtgg tggtggacgt gagccacgaa gaccctgagg
    tcaagttcaa ctggtacgtg gacggcgtgg aggtgcataa
    tgccaagaca aagccgcggg aggagcagta caacagcacg
    taccgtgtgg tcagcgtcct caccgtcctg caccaggact
    ggctgaatgg caaggagtac aagtgcaagg tctccaacaa
    agccctccca gcccccatcg agaaaaccat ctccaaagcc
    aaagggcagc cccgagaacc acaggtgtac accctgcccc
    catcccgcga tgagctgacc aagaaccagg tcagcctgac
    ctgcctggtc aaaggcttct atcccagcga catcgccgtg
    gagtgggaga gcaatgggca gccggagaac aactacaaga
    ccacgcctcc cgtgttggac tccgacggct ccttcttcct
    ctacagcaag ctcaccgtgg acaagagcag gtggcagcag
    gggaacgtct tctcatgctc cgtgatgcat gaggctctgc
    acaaccacta cacgcagaag agcctctccc tgtctccggg
    taaatga
  • B domain deleted FVIII amino acid sequence: Signal peptide underlined; 14 amino acid linker (containing the remaining B domain) between the HC and LC sequence is double underlined, with the 5743/Q1638 fusion site indicated in bold.
  • 1 MQIELSTCFF LCLLRFCFSA TRRYYLGAVE LSWDYMQSDL
    GELPVDARFP
    51 PRVPKSFPFN TSVVYKKTLF VEFTDHLFNI AKPRPPWMGL
    LGPTIQAEVY
    101 DTVVITLKNM ASHPVSLHAV GVSYWKASEG AEYDDQTSQR
    EKEDDKVFPG
    151 GSHTYVWQVL KENGPMASDP LCLTYSYLSH VDLVKDLNSG
    LIGALLVCRE
    201 GSLAKEKTQT LHKFILLFAV FDEGKSWHSE TKNSLMQDRD
    AASARAWPKM
    251 HTVNGYVNRS LPGLIGCHRK SVYWHVIGMG TTPEVHSIFL
    EGHTFLVRNH
    301 RQASLEISPI TFLTAQTLLM DLGQFLLFCH ISSHQHDGME
    AYVKVDSCPE
    351 EPQLRMKNNE EAEDYDDDLT DSEMDVVRFD DDNSPSFIQI
    RSVAKKHPKT
    401 WVHYIAAEEE DWDYAPLVLA PDDRSYKSQY LNNGPQRIGR
    KYKKVRFMAY
    451 TDETFKTREA IQHESGILGP LLYGEVGDTL LIIFKNQASR
    PYNIYPHGIT
    501 DVRPLYSRRL PKGVKHLKDF PILPGEIFKY KWTVTVEDGP
    TKSDPRCLTR
    551 YYSSFVNMER DLASGLIGPL LICYKESVDQ RGNQIMSDKR
    NVILFSVFDE
    601 NRSWYLTENI QRFLPNPAGV QLEDPEFQAS NIMHSINGYV
    FDSLQLSVCL
    651 HEVAYWYILS IGAQTDFLSV FFSGYTFKHK MVYEDTLTLF
    PFSGETVFMS
    701 MENPGLWILG CHNSDFRNRG MTALLKVSSC DKNTGDYYED
    SYEDISAYLL
    751 SKNNAIEPRS F
    Figure US20210355473A1-20211118-P00001
    NPPVLKR HQR EITRTTL QSDQEEIDYD
    DTISVEMKKE
    801 DFDIYDEDEN QSPRSFQKKT RHYFIAAVER LWDYGMSSSP
    HVLRNRAQSG
    851 SVPQFKKVVF QEFTDGSFTQ PLYRGELNEH LGLLGPYIRA
    EVEDNIMVTF
    901 RNQASRPYSF YSSLISYEED QRQGAEPRKN FVKPNETKTY
    FWKVQHHMAP
    951 TKDEFDCKAW AYFSDVDLEK DVHSGLIGPL LVCHTNTLNP
    AHGRQVTVQE
    1001 FALFFTIFDE TKSWYFTENM ERNCRAPCNI QMEDPTFKEN
    YRFHAINGYI
    1051 MDTLPGLVMA QDQRIRWYLL SMGSNENIHS IHFSGHVFTV
    RKKEEYKMAL
    1101 YNLYPGVFET VEMLPSKAGI WRVECLIGEH LHAGMSTLFL
    VYSNKCQTPL
    1151 GMASGHIRDF QITASGQYGQ WAPKLARLHY SGSINAWSTK
    EPFSWIKVDL
    1201 LAPMIIHGIK TQGARQKFSS LYISQFIIMY SLDGKKWQTY
    RGNSTGTLMV
    1251 FFGNVDSSGI KHNIFNPPII ARYIRLHPTH YSIRSTLRME
    LMGCDLNSCS
    1301 MPLGMESKAI SDAQITASSY FTNMFATWSP SKARLHLQGR
    SNAWRPQVNN
    1351 PKEWLQVDFQ KTMKVTGVTT QGVKSLLTSM YVKEFLISSS
    QDGHQWTLFF
    1401 QNGKVKVFQG NQDSFTPVVN SLDPPLLTRY LRIHPQSWVH
    QIALRMEVLG
    1451 CEAQDLY
  • Full length FVIII amino acid sequence: Signal peptide underlined
  • 1 MQIELSTCFF LCLLRFCFSA TRRYYLGAVE LSWDYMQSDL
    GELPVDARFP
    51 PRVPKSFPFN TSVVYKKTLF VEFTDHLFNI AKPRPPWMGL
    LGPTIQAEVY
    101 DTVVITLKNM ASHPVSLHAV GVSYWKASEG AEYDDQTSQR
    EKEDDKVFPG
    151 GSHTYVWQVL KENGPMASDP LCLTYSYLSH VDLVKDLNSG
    LIGALLVCRE
    201 GSLAKEKTQT LHKFILLFAV FDEGKSWHSE TKNSLMQDRD
    AASARAWPKM
    251 HTVNGYVNRS LPGLIGCHRK SVYWHVIGMG TTPEVHSIFL
    EGHTFLVRNH
    301 RQASLEISPI TFLTAQTLLM DLGQFLLFCH ISSHQHDGME
    AYVKVDSCPE
    351 EPQLRMKNNE EAEDYDDDLT DSEMDVVRFD DDNSPSFIQI
    RSVAKKHPKT
    401 WVHYIAAEEE DWDYAPLVLA PDDRSYKSQY LNNGPQRIGR
    KYKKVRFMAY
    451 TDETFKTREA IQHESGILGP LLYGEVGDTL LIIFKNQASR
    PYNIYPHGIT
    501 DVRPLYSRRL PKGVKHLKDF PILPGEIFKY KWTVTVEDGP
    TKSDPRCLTR
    551 YYSSFVNMER DLASGLIGPL LICYKESVDQ RGNQIMSDKR
    NVILFSVFDE
    601 NRSWYLTENI QRFLPNPAGV QLEDPEFQAS NIMHSINGYV
    FDSLQLSVCL
    651 HEVAYWYILS IGAQTDFLSV FFSGYTFKHK MVYEDTLTLF
    PFSGETVFMS
    701 MENPGLWILG CHNSDFRNRG MTALLKVSSC DKNTGDYYED
    SYEDISAYLL
    751 SKNNAIEPRS FSQNSRHPST RQKQFNATTI PENDIEKTDP
    WFAHRTPMPK
    801 IQNVSSSDLL MLLRQSPTPH GLSLSDLQEA KYETFSDDPS
    PGAIDSNNSL
    851 SEMTHFRPQL HHSGDMVFTP ESGLQLRLNE KLGTTAATEL
    KKLDFKVSST
    901 SNNLISTIPS DNLAAGTDNT SSLGPPSMPV HYDSQLDTTL
    FGKKSSPLTE
    951 SGGPLSLSEE NNDSKLLESG LMNSQESSWG KNVSSTESGR
    LFKGKRAHGP
    1001 ALLTKDNALF KVSISLLKTN KTSNNSATNR KTHIDGPSLL
    IENSPSVWQN
    1051 ILESDTEFKK VTPLIHDRML MDKNATALRL NHMSNKTTSS
    KNMEMVQQKK
    1101 EGPIPPDAQN PDMSFFKMLF LPESARWIQR THGKNSLNSG
    QGPSPKQLVS
    1151 LGPEKSVEGQ NFLSEKNKVV VGKGEFTKDV GLKEMVFPSS
    RNLFLTNLDN
    1201 LHENNTHNQE KKIQEEIEKK ETLIQENVVL PQIHTVTGTK
    NFMKNLFLLS
    1251 TRQNVEGSYD GAYAPVLQDF RSLNDSTNRT KKHTAHFSKK
    GEEENLEGLG
    1301 NQTKQIVEKY ACTTRISPNT SQQNFVTQRS KRALKQFRLP
    LEETELEKRI
    1351 IVDDTSTQWS KNMKHLTPST LTQIDYNEKE KGAITQSPLS
    DCLTRSHSIP
    1401 QANRSPLPIA KVSSFPSIRP IYLTRVLFQD NSSHLPAASY
    RKKDSGVQES
    1451 SHFLQGAKKN NLSLAILTLE MTGDQREVGS LGTSATNSVT
    YKKVENTVLP
    1501 KPDLPKTSGK VELLPKVHIY QKDLFPTETS NGSPGHLDLV
    EGSLLQGTEG
    1551 AIKWNEANRP GKVPFLRVAT ESSAKTPSKL LDPLAWDNHY
    GTQIPKEEWK
    1601 SQEKSPEKTA FKKKDTILSL NACESNHAIA AINEGQNKPE
    IEVTWAKQGR
    1651 TERLCSQNPP VLKRHQREIT RTTLQSDQEE IDYDDTISVE
    MKKEDFDIYD
    1701 EDENQSPRSF QKKTRHYFIA AVERLWDYGM SSSPHVLRNR
    AQSGSVPQFK
    1751 KVVFQEFTDG SFTQPLYRGE LNEHLGLLGP YIRAEVEDNI
    MVTFRNQASR
    1801 PYSFYSSLIS YEEDQRQGAE PRKNFVKPNE TKTYFWKVQH
    HMAPTKDEFD
    1851 CKAWAYFSDV DLEKDVHSGL IGPLLVCHTN TLNPAHGRQV
    TVQEFALFFT
    1901 IFDETKSWYF TENMERNCRA PCNIQMEDPT FKENYRFHAI
    NGYIMDTLPG
    1951 LVMAQDQRIR WYLLSMGSNE NIHSIHFSGH VFTVRKKEEY
    KMALYNLYPG
    2001 VFETVEMLPS KAGIWRVECL IGEHLHAGMS TLFLVYSNKC
    QTPLGMASGH
    2051 IRDFQITASG QYGQWAPKLA RLHYSGSINA WSTKEPFSWI
    KVDLLAPMII
    2101 HGIKTQGARQ KFSSLYISQF IIMYSLDGKK WQTYRGNSTG
    TLMVFFGNVD
    2151 SSGIKHNIFN PPIIARYIRL HPTHYSIRST LRMELMGCDL
    NSCSMPLGME
    2201 SKAISDAQIT ASSYFTNMFA TWSPSKARLH LQGRSNAWRP
    QVNNPKEWLQ
    2251 VDFQKTMKVT GVTTQGVKSL LTSMYVKEFL ISSSQDGHQW
    TLFFQNGKVK
    2301 VFQGNQDSFT PVVNSLDPPL LTRYLRIHPQ SWVHQIALRM
    EVLGCEAQDL
    2351 Y
  • FIX amino acid sequence. Signal sequence is shown in dotted underline, propeptide is double underlined
  • Figure US20210355473A1-20211118-C00011
    ERECMEEKCS FEEAREVFEN TERTTEFWKQ YVDGDQCESN PCLNGGSCKD DINSYECWCT
    FGFEGKNCEL DVTCNIKNGR CEQFCKNSAD NKVVCSCTEG YRLAENQKSC EPAVPFPCGR
    VSVSQTSKLT RAETVFPDVD YVNSTEAETI LDNITQSTQS FNDFTRVVGG EDAKPGQFPW
    QVVLNGKVDA FCGGSIVNEK WIVTAAHCVE TGVKITVVAG EHNIEETEHT EQKRNVIRII
    PHHNYNAAIN KYNHDIALLE LDEPLVLNSY VTPICIADKE YTNIFLKFGS GYVSGWGRVF
    HKGRSALVLQ YLRVPLVDRA TCLRSTKFTI YNNMFCAGFH EGGRDSCQGD SGGPHVTEVE
    GTSFLTGIIS WGEECAMKGK YGIYTKVSRY VNWIKEKTKL T
  • FIX DNA sequence
    atgcagcgcg tgaacatgat catggcagaa tcaccaggcc
    tcatcaccat ctgcctttta ggatatctac tcagtgctga
    atgtacagtt tttcttgatc atgaaaacgc acaaaatt
    ctgaatcggc caaagaggta taattcaggt aaattggaag
    agtttgttca agggaatcta gagagagaat gtatggaaga
    aaagtgtagt tttgaagaag cacgagaagt ttttgaaaac
    actgaaagaa caactgaatt ttggaagcag tatgttgatg
    gagatcagtg tgagtccaat ccatgtttaa atggcggcag
    ttgcaaggat gacattaatt cctatgaatg ttggtgtccc
    tttggatttg aaggaaagaa ctgtgaatta gatgtaacat
    gtaacattaa gaatggcaga tgcgagcagt tttgtaaaaa
    tagtgctgat aacaaggtgg tttgctcctg tactgaggga
    tatcgacttg cagaaaacca gaagtcctgt gaaccagcag
    tgccatttcc atgtggaaga gtttctgttt cacaaacttc
    taagctcacc cgtgctgaga ctgtttttcc tgatgtggac
    tatgtaaatt ctactgaagc tgaaaccatt ttggataaca
    tcactcaaag cacccaatca tttaatgact tcactcgggt
    tgttggtgga gaagatgcca aaccaggtca attcccttgg
    caggttgttt tgaatggtaa agttgatgca ttctgtggag
    gctctatcgt taatgaaaaa tggattgtaa ctgctgccca
    ctgtgttgaa actggtgtta aaattacagt tgtcgcaggt
    gaacataata ttgaggagac agaacataca gagcaaaagc
    gaaatgtgat tcgaattatt cctcaccaca actacaatgc
    agctattaat aagtacaacc atgacattgc ccttctggaa
    ctggacgaac ccttagtgct aaacagctac gttacaccta
    tttgcattgc tgacaaggaa tacacgaaca tcttcctcaa
    atttggatct ggctatgtaa gtggctgggg aagagtcttc
    cacaaaggga gatcagcttt agttcttcag taccttagag
    ttccacttgt tgaccgagcc acatgtcttc gatctacaaa
    gttcaccatc tataacaaca tgttctgtgc tggcttccat
    gaaggaggta gagattcatg tcaaggagat agtgggggac
    cccatgttac tgaagtggaa gggaccagtt tcttaactgg
    aattattagc tggggtgaag agtgtgcaat gaaaggcaaa
    tatggaatat ataccaaggt atcccggtat gtcaactgga
    ttaaggaaaa aacaaagctc acttga
  • FX amino acid sequence. Signal sequence is shown in dotted underline, propeptide is double underlined
  • Figure US20210355473A1-20211118-C00012
    TCSYEEAREV FEDSDKTNEF WNKYKDGDQC ETSPCQNQGK CKDGLGEYTC TCLEGFEGKN
    CELFTRKLCS LDNGDCDQFC HEEQNSVVCS CARGYTLADN GKACIPTGPY PCGKQTLERR
    KRSVAQATSS SGEAPDSITW KPYDAADLDP TENPFDLLDF NQTQPERGDN NLTRIVGGQE
    CKDGECPWQA LLINEENEGF CGGTILSEFY ILTAAHCLYQ AKRFKVRVGD RNTEQEEGGE
    AVHEVEVVIK HNRFTKETYD FDIAVLRLKT PITFRMNVAP ACLPERDWAE STLMTQKTGI
    VSGFGRTHEK GRQSTRLKML EVPYVDRNSC KLSSSFIITQ NMFCAGYDTK QEDACQGDSG
    GPHVTRFKDT YFVTGIVSWG EGCARKGKYG IYTKVTAFLK WIDRSMKTRG LPKAKSHAPE
    VITSSPLK
  • FX DNA sequence
    atggggcgcc cactgcacct cgtcctgctc agtgcctccc tggctggcct cctgctgctc
    ggggaaagtc tgttcatccg cagggagcag gccaacaaca tcctggcgag ggtcacgagg
    gccaattcct ttcttgaaga gatgaagaaa ggacacctcg aaagagagtg catggaagag
    acctgctcat acgaagaggc ccgcgaggtc tttgaggaca gcgacaagac gaatgaattc
    tggaataaat acaaagatgg cgaccagtgt gagaccagtc cttgccagaa ccagggcaaa
    tgtaaagacg gcctcgggga atacacctgc acctgtttag aaggattcga aggcaaaaac
    tgtgaattat tcacacggaa gctctgcagc ctggacaacg gggactgtga ccagttctgc
    cacgaggaac agaactctgt ggtgtgctcc tgcgcccgcg ggtacaccct ggctgacaac
    ggcaaggcct gcattcccac agggccctac ccctgtggga aacagaccct ggaacgcagg
    aagaggtcag tggcccaggc caccagcagc agcggggagg cccctgacag catcacatgg
    aagccatatg atgcagccga cctggacccc accgagaacc ccttcgacct gcttgacttc
    aaccagacgc agcctgagag gggcgacaac aacctcacca ggatcgtggg aggccaggaa
    tgcaaggacg gggagtgtcc ctggcaggcc ctgctcatca atgaggaaaa cgagggtttc
    tgtggtggaa ccattctgag cgagttctac atcctaacgg cagcccactg tctctaccaa
    gccaagagat tcaaggtgag ggtaggggac cggaacacgg agcaggagga gggcggtgag
    gcggtgcacg aggtggaggt ggtcatcaag cacaaccggt tcacaaagga gacctatgac
    ttcgacatcg ccgtgctccg gctcaagacc cccatcacct tccgcatgaa cgtggcgcct
    gcctgcctcc ccgagcgtga ctgggccgag tccacgctga tgacgcagaa gacggggatt
    gtgagcggct tcgggcgcac ccacgagaag ggccggcagt ccaccaggct caagatgctg
    gaggtgccct acgtggaccg caacagctgc aagctgtcca gcagcttcat catcacccag
    aacatgttct gtgccggcta cgacaccaag caggaggatg cctgccaggg ggacagcggg
    ggcccgcacg tcacccgctt caaggacacc tacttcgtga caggcatcgt cagctgggga
    gagggctgtg cccgtaaggg gaagtacggg atctacacca aggtcaccgc cttcctcaag
    tggatcgaca ggtccatgaa aaccaggggc ttgcccaagg ccaagagcca tgccccggag
    gtcataacgt cctctccatt aaagtga
    DNA sequence of FVII-066
       1 ATGGTCTCCC AGGCCCTCAG GCTCCTCTGC CTTCTGCTTG GGCTTCAGGG CTGCCTGGCT
      61 GCAGTCTTCG TAACCCAGGA GGAAGCCCAC GGCGTCCTGC ACCGGCGCCG GCGCGCCAAC
     121 GCGTTCCTGG AGGAGCTGCG GCCGGGCTCC CTGGAGAGGG AGTGCAAGGA GGAGCAGTGC
     181 TCCTTCGAGG AGGCCCGGGA GATCTTCAAG GACGCGGAGA GGACGAAGCT GTTCTGGATT
     241 TCTTACAGTG ATGGGGACCA GTGTGCCTCA AGTCCATGCC AGAATGGGGG CTCCTGCAAG
     301 GACCAGCTCC AGTCCTATAT CTGCTTCTGC CTCCCTGCCT TCGAGGGCCG GAACTGTGAG
     361 ACGCACAAGG ATGACCAGCT GATCTGTGTG AACGAGAACG GCGGCTGTGA GCAGTACTGC
     421 AGTGACCACA CGGGCACCAA GCGCTCCTGT CGGTGCCACG AGGGGTACTC TCTGCTGGCA
     481 GACGGGGTGT CCTGCACACC CACAGTTGAA TATCCATGTG GAAAAATACC TATTCTAGAA
     541 AAAAGAAATG CCAGCAAACC CCAAGGCCGA ATTGTGGGGG GCAAGGTGTG CCCCAAAGGG
     601 GAGTGTCCAT GGCAGGTCCT GTTGTTGGTG AATGGAGCTC AGTTGTGTGG GGGGACCCTG
     661 ATCAACACCA TCTGGGTGGT CTCCGCGGCC CACTGTTTCG ACAAAATCAA GAACTGGAGG
     721 AACCTGATCG CGGTGCTGGG CGAGCACGAC CTCAGCGAGC ACGACGGGGA TGAGCAGAGC
     781 CGGCGGGTGG CGCAGGTCAT CATCCCCAGC ACGTACGTCC CGGGCACCAC CAACCACGAC
     841 ATCGCGCTGC TCCGCCTGCA CCAGCCCGTG GTCCTCACTG ACCATGTGGT GCCCCTCTGC
     901 CTGCCCGAAC GGACGTTCTC TGAGAGGACG CTGGCCTTCG TGCGCTTCTC ATTGGTCAGC
     961 GGCTGGGGCC AGCTGCTGGA CCGTGGCGCC ACGGCCCTGG AGCTCATGGT CCTCAACGTG
    1021 CCCCGGCTGA TGACCCAGGA CTGCCTGCAG CAGTCACGGA AGGTGGGAGA CTCCCCAAAT
    1081 ATCACGGAGT ACATGTTCTG TGCCGGCTAC TCGGATGGCA GCAAGGACTC CTGCAAGGGG
    1141 GACAGTGGAG GCCCACATGC CACCCACTAC CGGGGCACGT GGTACCTGAC GGGCATCGTC
    1201 AGCTGGGGCC AGGGCTGCGC AACCGTGGGC CACTTTGGGG TGTACACCAG GGTCTCCCAG
    1261 TACATCGAGT GGCTGCAAAA GCTCATGCGC TCAGAGCCAC GCCCAGGAGT CCTCCTGCGA
    1321 GCCCCATTTC CCGGTGGCGG TGGCTCCGGC GGAGGTGGGT CCGGTGGCGG CGGATCAGGT
    1381 GGGGGTGGAT CAGGCGGTGG AGGTTCCGGT GGCGGGGGAT CCGACAAAAC TCACACATGC
    1441 CCACCGTGCC CAGCTCCGGA ACTCCTGGGA GGACCGTCAG TCTTCCTCTT CCCCCCAAAA
    1501 CCCAAGGACA CCCTCATGAT CTCCCGGACC CCTGAGGTCA CATGCGTGGT GGTGGACGTG
    1561 AGCCACGAAG ACCCTGAGGT CAAGTTCAAC TGGTACGTGG ACGGCGTGGA GGTGCATAAT
    1621 GCCAAGACAA AGCCGCGGGA GGAGCAGTAC AACAGCACGT ACCGTGTGGT CAGCGTCCTC
    1681 ACCGTCCTGC ACCAGGACTG GCTGAATGGC AAGGAGTACA AGTGCAAGGT CTCCAACAAA
    1741 GCCCTCCCAG CCCCCATCGA GAAAACCATC TCCAAAGCCA AAGGGCAGCC CCGAGAACCA
    1801 CAGGTGTACA CCCTGCCCCC ATCCCGGGAT GAGCTGACCA AGAACCAGGT CAGCCTGACC
    1861 TGCCTGGTCA AAGGCTTCTA TCCCAGCGAC ATCGCCGTGG AGTGGGAGAG CAATGGGCAG
    1921 CCGGAGAACA ACTACAAGAC CACGCCTCCC GTGTTGGACT CCGACGGCTC CTTCTTCCTC
    1981 TACAGCAAGC TCACCGTCGA CAAGAGCAGG TGGCAGCAGG GGAACGTCTT CTCATGCTCC
    2041 GTGATGCATG AGGCTCTGCA CAACCACTAC ACGCAGAAGA GCCTCTCCCT GTCTCCGGGT
    2101 AAACGGCGCC GCCGGAGCGG TGGCGGCGGA TCAGGTGGGG GTGGATCAGG CGGTGGAGGT
    2161 TCCGGTGGCG GGGGATCCGG CGGTGGAGGT TCCGGTGGGG GTGGATCAAG GAAGAGGAGG
    2221 AAGAGGGCGC AGGTGCAGCT GCAGGAGTCT GGGGGAGGCT TGGTACAGCC TGGGGGGTCC
    2281 CTGAGACTCT CCTGTGCAGC CTCTGGATTC ATGTTTAGCA GGTATGCCAT GAGCTGGGTC
    2341 CGCCAGGCTC CAGGGAAGGG GCCAGAGTGG GTCTCAGGTA TTAGTGGTAG TGGTGGTAGT
    2401 ACATACTACG CAGACTCCGT GAAGGGCCGG TTCACCGTCT CCAGAGACAA TTCCAAGAAC
    2461 ACGCTGTATC TGCAAATGAA CAGCCTGAGA GCCGAGGACA CGGCTGTATA TTACTGCGCC
    2521 CGGGGCGCCA CCTACACCAG CCGGAGCGAC GTGCCCGACC AGACCAGCTT CGACTACTGG
    2581 GGCCAGGGAA CCCTGGTCAC CGTCTCCTCA GGGAGTGCAT CCGCCCCAAA GCTTGAAGAA
    2641 GGTGAATTTT CAGAAGCACG CGTATCTGAA CTGACTCAGG ACCCTGCTGT GTCTGTGGCC
    2701 TTGGGACAGA CAGTCAGGAT CACATGCCAA GGAGACAGCC TCAGAAACTT TTATGCAAGC
    2761 TGGTACCAGC AGAAGCCAGG ACAGGCCCCT ACTCTTGTCA TCTATGGTTT AAGTAAAAGG
    2821 CCCTCAGGGA TCCCAGACCG ATTCTCTGCC TCCAGCTCAG GAAACACAGC TTCCTTGACC
    2881 ATCACTGGGG CTCAGGCGGA AGATGAGGCT GACTATTACT GCCTGCTGTA CTACGGCGGC
    2941 GGCCAGCAGG GCGTGTTCGG CGGCGGCACC AAGCTGACCG TCCTACGTCA GCCCAAGGCT
    3001 GCCCCCTCGG TCACTCTGTT CCCGCCCTCT TCTGCGGCCG GTGGCGGTGG CTCCGGCGGA
    3061 GGTGGGTCCG GTGGCGGCGG ATCAGGTGGG GGTGGATCAG GCGGTGGAGG TTCCGGTGGC
    3121 GGGGGATCAG ACAAAACTCA CACATGCCCA CCGTGCCCAG CACCGGAACT CCTGGGCGGA
    3181 CCGTCAGTCT TCCTCTTCCC CCCAAAACCC AAGGACACCC TCATGATCTC CCGGACCCCT
    3241 GAGGTCACAT GCGTGGTGGT GGACGTGAGC CACGAAGACC CTGAGGTCAA GTTCAACTGG
    3301 TACGTGGACG GCGTGGAGGT GCATAATGCC AAGACAAAGC CGCGGGAGGA GCAGTACAAC
    3361 AGCACGTACC GTGTGGTCAG CGTCCTCACC GTCCTGCACC AGGACTGGCT GAATGGCAAG
    3421 GAGTACAAGT GCAAGGTCTC CAACAAAGCC CTCCCAGCCC CCATCGAGAA AACCATCTCC
    3481 AAAGCCAAAG GGCAGCCCCG AGAACCACAG GTGTACACCC TGCCCCCATC CCGGGATGAG
    3541 CTGACCAAGA ACCAGGTCAG CCTGACCTGC CTGGTCAAAG GCTTCTATCC CAGCGACATC
    3601 GCCGTGGAGT GGGAGAGCAA TGGGCAGCCG GAGAACAACT ACAAGACCAC GCCTCCCGTG
    3661 TTGGACTCCG ACGGCTCCTT CTTCCTCTAC AGCAAGCTCA CCGTGGACAA GAGCAGGTGG
    3721 CAGCAGGGGA ACGTCTTCTC ATGCTCCGTG ATGCATGAGG CTCTGCACAA CCACTACACG
    3781 CAGAAGAGCC TCTCCCTGTC TCCGGGTAAA TGA
  • FVII-066 amino acid sequence. Signal sequence is shown in dotted underline, propeptide is double underlined, linker region connecting FVII or SCE5 to Fc region is underlined, and linker with proprotein convertase processing sites is shown in bold
  • 1
    Figure US20210355473A1-20211118-C00013
    61 SFEEAREIFK DAERTKLFWI SYSDGDQCAS SPCQNGGSCK DQLQSYICFC LPAFEGRNCE
    121 THKDDQLICV NENGGCEQYC SDHTGTKRSC RCHEGYSLLA DGVSCTPTVE YPCGKIPILE
    181 KRNASKPQGR IVGGKVCPKG ECPWQVLLLV NGAQLCGGTL INTIWVVSAA HCFDKIKNWR
    241 NLIAVLGEHD LSEHDGDEQS RRVAQVIIPS TYVPGTTNHD IALLRLHQPV VLTDHVVPLC
    301 LPERTFSERT LAFVRFSLVS GWGQLLDRGA TALELMVLNV PRLMTQDCLQ QSRKVGDSPN
    361 ITEYMFCAGY SDGSKDSCKG DSGGPHATHY RGTWYLTGIV SWGQGCATVG HFGVYTRVSQ
    421 YIEWLQKLMR SEPRPGVLLR APFPGGGGSG GGGSGGGGSG GGGSGGGGSG GGGSDKTHTC
    481 PPCPAPELLG GPSVFLFPPK PKDTLMISRT PEVTCVVVDV SHEDPEVKFN WYVDGVEVHN
    541 AKTKPREEQY NSTYRVVSVL TVLHQDWLNG KEYKCKVSNK ALPAPIEKTI SKAKGQPREP
    601 QVYTLPPSRD ELTKNQVSLT CLVKGFYPSD IAVEWESNGQ PENNYKTTPP VLDSDGSFFL
    661 YSKLTVDKSR WQQGNVFSCS VMHEALHNHY TQKSLSLSPG KRRRRSGGGG SGGGGSGGGG
    721 SGGGGSGGGG SGGGGSRKRR KRAQVQLQES GGGLVQPGGS LRLSCAASGF MFSRYAMSWV
    781 RQAPGKGPEW VSGISGSGGS TYYADSVKGR FTVSRDNSKN TLYLQMNSLR AEDTAVYYCA
    841 RGATYTSRSD VPDQTSFDYW GQGTLVTVSS GSASAPKLEE GEFSEARVSE LTQDPAVSVA
    901 LGQTVRITCQ GDSLRNFYAS WYQQKPGQAP TLVIYGLSKR PSGIPDRFSA SSSGNTASLT
    961 ITGAQAEDEA DYYCLLYYGG GQQGVFGGGT KLTVLRQPKA APSVTLFPPS SAAGGGGSGG
    1021 GGSGGGGSGG GGSGGGGSGG GGSDKTHTCP PCPAPELLGG PSVFLFPPKP KDTLMISRTP
    1081 EVTCVVVDVS HEDPEVKFNW YVDGVEVHNA KTKPREEQYN STYRVVSVLT VLHQDWLNGK
    1141 EYKCKVSNKA LPAPIEKTIS KAKGQPREPQ VYTLPPSRDE LTKNQVSLTC LVKGFYPSDI
    1201 AVEWESNGQP ENNYKTTPPV LDSDGSFFLY SKLTVDKSRW QQGNVFSCSV MHEALHNHYT
    1261 QKSLSLSPGK *
  • DNA sequence for FVII-057
    1 ATGGTCTCCC AGGCCCTCAG GCTCCTCTGC CTTCTGCTTG
    GGCTTCAGGG CTGCCTGGCT
    61 GCAGTCTTCG TAACCCAGGA GGAAGCCCAC GGCGTCCTGC
    ACCGGCGCCG GCGCGCCAAC
    121 GCGTTCCTGG AGGAGCTGCG GCCGGGCTCC CTGGAGAGGG
    AGTGCAAGGA GGAGCAGTGC
    181 TCCTTCGAGG AGGCCCGGGA GATCTTCAAG GACGCGGAGA
    GGACGAAGCT GTTCTGGATT
    241 TCTTACAGTG ATGGGGACCA GTGTGCCTCA AGTCCATGCC
    AGAATGGGGG CTCCTGCAAG
    301 GACCAGCTCC AGTCCTATAT CTGCTTCTGC CTCCCTGCCT
    TCGAGGGCCG GAACTGTGAG
    361 ACGCACAAGG ATGACCAGCT GATCTGTGTG AACGAGAACG
    GCGGCTGTGA GCAGTACTGC
    421 AGTGACCACA CGGGCACCAA GCGCTCCTGT CGGTGCCACG
    AGGGGTACTC TCTGCTGGCA
    481 GACGGGGTGT CCTGCACACC CACAGTTGAA TATCCATGTG
    GAAAAATACC TATTCTAGAA
    541 AAAAGAAATG CCAGCAAACC CCAAGGCCGA GGTGGCGGTG
    GCTCCGGCGG AGGTGGGTCC
    601 GGTGGCGGCG GATCAGGTGG GGGTGGATCA GGCGGTGGAG
    GTTCCGGTGG CGGGGGATCC
    661 GACAAAACTC ACACATGCCC ACCGTGCCCA GCTCCGGAAC
    TCCTGGGAGG ACCGTCAGTC
    721 TTCCTCTTCC CCCCAAAACC CAAGGACACC CTCATGATCT
    CCCGGACCCC TGAGGTCACA
    781 TGCGTGGTGG TGGACGTGAG CCACGAAGAC CCTGAGGTCA
    AGTTCAACTG GTACGTGGAC
    841 GGCGTGGAGG TGCATAATGC CAAGACAAAG CCGCGGGAGG
    AGCAGTACAA CAGCACGTAC
    901 CGTGTGGTCA GCGTCCTCAC CGTCCTGCAC CAGGACTGGC
    TGAATGGCAA GGAGTACAAG
    961 TGCAAGGTCT CCAACAAAGC CCTCCCAGCC CCCATCGAGA
    AAACCATCTC CAAAGCCAAA
    1021 GGGCAGCCCC GAGAACCACA GGTGTACACC CTGCCCCCAT
    CCCGGGATGA GCTGACCAAG
    1081 AACCAGGTCA GCCTGACCTG CCTGGTCAAA GGCTTCTATC
    CCAGCGACAT CGCCGTGGAG
    1141 TGGGAGAGCA ATGGGCAGCC GGAGAACAAC TACAAGACCA
    CGCCTCCCGT GTTGGACTCC
    1201 GACGGCTCCT TCTTCCTCTA CAGCAAGCTC ACCGTCGACA
    AGAGCAGGTG GCAGCAGGGG
    1261 AACGTCTTCT CATGCTCCGT GATGCATGAG GCTCTGCACA
    ACCACTACAC GCAGAAGAGC
    1321 CTCTCCCTGT CTCCGGGTAA AGGTGGCGGC GGATCAGGTG
    GGGGTGGATC AGGCGGTGGA
    1381 GGTTCCGGTG GCGGGGGATC CGGCGGTGGA GGTTCCGGTG
    GGGGTGGATC AGGAGGAGGT
    1441 GGTTCAAGCG TGAGCCAGAC CAGCAAGCTG ACCCGGATTG
    TGGGGGGCAA GGTGTGCCCC
    1501 AAAGGGGAGT GTCCATGGCA GGTCCTGTTG TTGGTGAATG
    GAGCTCAGTT GTGTGGGGGG
    1561 ACCCTGATCA ACACCATCTG GGTGGTCTCC GCGGCCCACT
    GTTTCGACAA AATCAAGAAC
    1621 TGGAGGAACC TGATCGCGGT GCTGGGCGAG CACGACCTCA
    GCGAGCACGA CGGGGATGAG
    1681 CAGAGCCGGC GGGTGGCGCA GGTCATCATC CCCAGCACGT
    ACGTCCCGGG CACCACCAAC
    1741 CACGACATCG CGCTGCTCCG CCTGCACCAG CCCGTGGTCC
    TCACTGACCA TGTGGTGCCC
    1801 CTCTGCCTGC CCGAACGGAC GTTCTCTGAG AGGACGCTGG
    CCTTCGTGCG CTTCTCATTG
    1861 GTCAGCGGCT GGGGCCAGCT GCTGGACCGT GGCGCCACGG
    CCCTGGAGCT CATGGTCCTC
    1921 AACGTGCCCC GGCTGATGAC CCAGGACTGC CTGCAGCAGT
    CACGGAAGGT GGGAGACTCC
    1981 CCAAATATCA CGGAGTACAT GTTCTGTGCC GGCTACTCGG
    ATGGCAGCAA GGACTCCTGC
    2041 AAGGGGGACA GTGGAGGCCC ACATGCCACC CACTACCGGG
    GCACGTGGTA CCTGACGGGC
    2101 ATCGTCAGCT GGGGCCAGGG CTGCGCAACC GTGGGCCACT
    TTGGGGTGTA CACCAGGGTC
    2161 TCCCAGTACA TCGAGTGGCT GCAAAAGCTC ATGCGCTCAG
    AGCCACGCCC AGGAGTCCTC
    2221 CTGCGAGCCC CATTTCCCGG TGGCGGTGGC TCCGGCGGAG
    GTGGGTCCGG TGGCGGCGGA
    2281 TCAGGTGGGG GTGGATCAGG CGGTGGAGGT TCCGGTGGCG
    GGGGATCAGA CAAAACTCAC
    2341 ACATGCCCAC CGTGCCCAGC ACCTGAACTC CTGGGAGGAC
    CGTCAGTCTT CCTCTTCCCC
    2401 CCAAAACCCA AGGACACCCT CATGATCTCC CGGACCCCTG
    AGGTCACATG CGTGGTGGTG
    2461 GACGTGAGCC ACGAAGACCC TGAGGTCAAG TTCAACTGGT
    ACGTGGACGG CGTGGAGGTG
    2521 CATAATGCCA AGACAAAGCC GCGGGAGGAG CAGTACAACA
    GCACGTACCG TGTGGTCAGC
    2581 GTCCTCACCG TCCTGCACCA GGACTGGCTG AATGGCAAGG
    AGTACAAGTG CAAGGTCTCC
    2641 AACAAAGCCC TCCCAGCCCC CATCGAGAAA ACCATCTCCA
    AAGCCAAAGG GCAGCCCCGA
    2701 GAACCACAGG TGTACACCCT GCCCCCATCC CGGGATGAGC
    TGACCAAGAA CCAGGTCAGC
    2761 CTGACCTGCC TGGTCAAAGG CTTCTATCCC AGCGACATCG
    CCGTGGAGTG GGAGAGCAAT
    2821 GGGCAGCCGG AGAACAACTA CAAGACCACG CCTCCCGTGT
    TGGACTCCGA CGGCTCCTTC
    2881 TTCCTCTACA GCAAGCTCAC CGTGGACAAG AGCAGGTGGC
    AGCAGGGGAA CGTCTTCTCA
    2941 TGCTCCGTGA TGCATGAGGC TCTGCACAAC CACTACACGC
    AGAAGAGCCT CTCCCTGTCT
    3001 CCGGGTAAAT GA
  • FVII-057 amino acid sequence. Signal sequence is shown in dotted underline, propeptide is double underlined, linker region connecting FVII light chain or heavy chain to Fc region is underlined, linker region connecting the Fc and the Factor XIa cleavage site is shown in bold, and the Factor XIa cleavage site is shown in dashed underline
  • 1
    Figure US20210355473A1-20211118-C00014
    61 SFEEAREIFK DAERTKLFWI SYSDGDQCAS SPCQNGGSCK DQLQSYICFC LPAFEGRNCE
    121 THKDDQLICV NENGGCEQYC SDHTGTKRSC RCHEGYSLLA DGVSCTPTVE YPCGKIPILE
    181 KRNASKPQGR GGGGSGGGGS GGGGSGGGGS GGGGSGGGGS DKTHTCPPCP APELLGGPSV
    241 FLFPPKPKDT LMISRTPEVT CVVVDVSHED PEVKFNWYVD GVEVHNAKTK PREEQYNSTY
    301 RVVSVLTVLH QDWLNGKEYK CKVSNKALPA PIEKTISKAK GQPREPQVYT LPPSRDELTK
    361 NQVSLTCLVK GFYPSDIAVE WESNGQPENN YKTTPPVLDS DGSFFLYSKL TVDKSRWQQG
    421 NVFSCSVMHE ALHNHYTQKS LSLSPGKGGG GSGGGGSGGG GSGGGGSGGG GSGGGGSGGG
    481
    Figure US20210355473A1-20211118-C00015
    541 WRNLIAVLGE HDLSEHDGDE QSRRVAQVII PSTYVPGTTN HDIALLRLHQ PVVLTDHVVP
    601 LCLPERTFSE RTLAFVRFSL VSGWGQLLDR GATALELMVL NVPRLMTQDC LQQSRKVGDS
    661 PNITEYMFCA GYSDGSKDSC KGDSGGPHAT HYRGTWYLTG IVSWGQGCAT VGHFGVYTRV
    721 SQYIEWLQKL MRSEPRPGVL LRAPFPGGGG SGGGGSGGGG SGGGGSGGGG SGGGGSDKTH
    781 TCPPCPAPEL LGGPSVFLFP PKPKDTLMIS RTPEVTCVVV DVSHEDPEVK FNWYVDGVEV
    841 HNAKTKPREE QYNSTYRVVS VLTVLHQDWL NGKEYKCKVS NKALPAPIEK TISKAKGQPR
    901 EPQVYTLPPS RDELTKNQVS LTCLVKGFYP SDIAVEWESN GQPENNYKTT PPVLDSDGSF
    961 FLYSKLTVDK SRWOOGNVFS CSVMHEALHN HYTOKSLSLS PGK*
  • DNA sequence for FVII-058
    1 ATGGTCTCCC AGGCCCTCAG GCTCCTCTGC CTTCTGCTTG
    GGCTTCAGGG CTGCCTGGCT
    61 GCAGTCTTCG TAACCCAGGA GGAAGCCCAC GGCGTCCTGC
    ACCGGCGCCG GCGCGCCAAC
    121 GCGTTCCTGG AGGAGCTGCG GCCGGGCTCC CTGGAGAGGG
    AGTGCAAGGA GGAGCAGTGC
    181 TCCTTCGAGG AGGCCCGGGA GATCTTCAAG GACGCGGAGA
    GGACGAAGCT GTTCTGGATT
    241 TCTTACAGTG ATGGGGACCA GTGTGCCTCA AGTCCATGCC
    AGAATGGGGG CTCCTGCAAG
    301 GACCAGCTCC AGTCCTATAT CTGCTTCTGC CTCCCTGCCT
    TCGAGGGCCG GAACTGTGAG
    361 ACGCACAAGG ATGACCAGCT GATCTGTGTG AACGAGAACG
    GCGGCTGTGA GCAGTACTGC
    421 AGTGACCACA CGGGCACCAA GCGCTCCTGT CGGTGCCACG
    AGGGGTACTC TCTGCTGGCA
    481 GACGGGGTGT CCTGCACACC CACAGTTGAA TATCCATGTG
    GAAAAATACC TATTCTAGAA
    541 AAAAGAAATG CCAGCAAACC CCAAGGCCGA GGTGGCGGTG
    GCTCCGGCGG AGGTGGGTCC
    601 GGTGGCGGCG GATCAGGTGG GGGTGGATCA GGCGGTGGAG
    GTTCCGGTGG CGGGGGATCC
    661 GACAAAACTC ACACATGCCC ACCGTGCCCA GCTCCGGAAC
    TCCTGGGAGG ACCGTCAGTC
    721 TTCCTCTTCC CCCCAAAACC CAAGGACACC CTCATGATCT
    CCCGGACCCC TGAGGTCACA
    781 TGCGTGGTGG TGGACGTGAG CCACGAAGAC CCTGAGGTCA
    AGTTCAACTG GTACGTGGAC
    841 GGCGTGGAGG TGCATAATGC CAAGACAAAG CCGCGGGAGG
    AGCAGTACAA CAGCACGTAC
    901 CGTGTGGTCA GCGTCCTCAC CGTCCTGCAC CAGGACTGGC
    TGAATGGCAA GGAGTACAAG
    961 TGCAAGGTCT CCAACAAAGC CCTCCCAGCC CCCATCGAGA
    AAACCATCTC CAAAGCCAAA
    1021 GGGCAGCCCC GAGAACCACA GGTGTACACC CTGCCCCCAT
    CCCGGGATGA GCTGACCAAG
    1081 AACCAGGTCA GCCTGACCTG CCTGGTCAAA GGCTTCTATC
    CCAGCGACAT CGCCGTGGAG
    1141 TGGGAGAGCA ATGGGCAGCC GGAGAACAAC TACAAGACCA
    CGCCTCCCGT GTTGGACTCC
    1201 GACGGCTCCT TCTTCCTCTA CAGCAAGCTC ACCGTCGACA
    AGAGCAGGTG GCAGCAGGGG
    1261 AACGTCTTCT CATGCTCCGT GATGCATGAG GCTCTGCACA
    ACCACTACAC GCAGAAGAGC
    1321 CTCTCCCTGT CTCCGGGTAA AGGTGGCGGC GGATCAGGTG
    GGGGTGGATC AGGCGGTGGA
    1381 GGTTCCGGTG GCGGGGGATC CGGCGGTGGA GGTTCCGGTG
    GGGGTGGATC AGGAGGAGGT
    1441 GGTTCAGACT TCCTGGCCGA GGGCGGCGGC GTGCGGATTG
    TGGGGGGCAA GGTGTGCCCC
    1501 AAAGGGGAGT GTCCATGGCA GGTCCTGTTG TTGGTGAATG
    GAGCTCAGTT GTGTGGGGGG
    1561 ACCCTGATCA ACACCATCTG GGTGGTCTCC GCGGCCCACT
    GTTTCGACAA AATCAAGAAC
    1621 TGGAGGAACC TGATCGCGGT GCTGGGCGAG CACGACCTCA
    GCGAGCACGA CGGGGATGAG
    1681 CAGAGCCGGC GGGTGGCGCA GGTCATCATC CCCAGCACGT
    ACGTCCCGGG CACCACCAAC
    1741 CACGACATCG CGCTGCTCCG CCTGCACCAG CCCGTGGTCC
    TCACTGACCA TGTGGTGCCC
    1801 CTCTGCCTGC CCGAACGGAC GTTCTCTGAG AGGACGCTGG
    CCTTCGTGCG CTTCTCATTG
    1861 GTCAGCGGCT GGGGCCAGCT GCTGGACCGT GGCGCCACGG
    CCCTGGAGCT CATGGTCCTC
    1921 AACGTGCCCC GGCTGATGAC CCAGGACTGC CTGCAGCAGT
    CACGGAAGGT GGGAGACTCC
    1981 CCAAATATCA CGGAGTACAT GTTCTGTGCC GGCTACTCGG
    ATGGCAGCAA GGACTCCTGC
    2041 AAGGGGGACA GTGGAGGCCC ACATGCCACC CACTACCGGG
    GCACGTGGTA CCTGACGGGC
    2101 ATCGTCAGCT GGGGCCAGGG CTGCGCAACC GTGGGCCACT
    TTGGGGTGTA CACCAGGGTC
    2161 TCCCAGTACA TCGAGTGGCT GCAAAAGCTC ATGCGCTCAG
    AGCCACGCCC AGGAGTCCTC
    2221 CTGCGAGCCC CATTTCCCGG TGGCGGTGGC TCCGGCGGAG
    GTGGGTCCGG TGGCGGCGGA
    2281 TCAGGTGGGG GTGGATCAGG CGGTGGAGGT TCCGGTGGCG
    GGGGATCAGA CAAAACTCAC
    2341 ACATGCCCAC CGTGCCCAGC ACCTGAACTC CTGGGAGGAC
    CGTCAGTCTT CCTCTTCCCC
    2401 CCAAAACCCA AGGACACCCT CATGATCTCC CGGACCCCTG
    AGGTCACATG CGTGGTGGTG
    2461 GACGTGAGCC ACGAAGACCC TGAGGTCAAG TTCAACTGGT
    ACGTGGACGG CGTGGAGGTG
    2521 CATAATGCCA AGACAAAGCC GCGGGAGGAG CAGTACAACA
    GCACGTACCG TGTGGTCAGC
    2581 GTCCTCACCG TCCTGCACCA GGACTGGCTG AATGGCAAGG
    AGTACAAGTG CAAGGTCTCC
    2641 AACAAAGCCC TCCCAGCCCC CATCGAGAAA ACCATCTCCA
    AAGCCAAAGG GCAGCCCCGA
    2701 GAACCACAGG TGTACACCCT GCCCCCATCC CGGGATGAGC
    TGACCAAGAA CCAGGTCAGC
    2761 CTGACCTGCC TGGTCAAAGG CTTCTATCCC AGCGACATCG
    CCGTGGAGTG GGAGAGCAAT
    2821 GGGCAGCCGG AGAACAACTA CAAGACCACG CCTCCCGTGT
    TGGACTCCGA CGGCTCCTTC
    2881 TTCCTCTACA GCAAGCTCAC CGTGGACAAG AGCAGGTGGC
    AGCAGGGGAA CGTCTTCTCA
    2941 TGCTCCGTGA TGCATGAGGC TCTGCACAAC CACTACACGC
    AGAAGAGCCT CTCCCTGTCT
    3001 CCGGGTAAAT GA
  • FVII-058 amino acid sequence. Signal sequence is shown in dotted underline, propeptide is double underlined, linker region connecting FVII light chain or heavy chain to Fc region is underlined, linker region connecting the Fc and the thrombin cleavage site is shown in bold, and the thrombin cleavage site is shown in dashed underline
  • 1
    Figure US20210355473A1-20211118-C00016
    61 SFEEAREIFK DAERTKLFWI SYSDGDQCAS SPCQNGGSCK DQLQSYICFC LPAFEGRNCE
    121 THKDDQLICV NENGGCEQYC SDHTGTKRSC RCHEGYSLLA DGVSCTPTVE YPCGKIPILE
    181 KRNASKPQGR GGGGSGGGGS GGGGSGGGGS GGGGSGGGGS DKTHTCPPCP APELLGGPSV
    241 FLFPPKPKDT LMISRTPEVT CVVVDVSHED PEVKFNWYVD GVEVHNAKTK PREEQYNSTY
    301 RVVSVLTVLH QDWLNGKEYK CKVSNKALPA PIEKTISKAK GQPREPQVYT LPPSRDELTK
    361 NQVSLTCLVK GFYPSDIAVE WESNGQPENN YKTTPPVLDS DGSFFLYSKL TVDKSRWQQG
    421 NVFSCSVMHE ALHNHYTQKS LSLSPGKGGG GSGGGGSGGG GSGGGGSGGG GSGGGGSGGG
    481
    Figure US20210355473A1-20211118-C00017
    541 WRNLIAVLGE HDLSEHDGDE QSRRVAQVII PSTYVPGTTN HDIALLRLHQ PVVLTDHVVP
    601 LCLPERTFSE RTLAFVRFSL VSGWGQLLDR GATALELMVL NVPRLMTQDC LQQSRKVGDS
    661 PNITEYMFCA GYSDGSKDSC KGDSGGPHAT HYRGTWYLTG IVSWGQGCAT VGHFGVYTRV
    721 SQYIEWLQKL MRSEPRPGVL LRAPFPGGGG SGGGGSGGGG SGGGGSGGGG SGGGGSDKTH
    781 TCPPCPAPEL LGGPSVFLFP PKPKDTLMIS RTPEVTCVVV DVSHEDPEVK FNWYVDGVEV
    841 HNAKTKPREE QYNSTYRVVS VLTVLHQDWL NGKEYKCKVS NKALPAPIEK TISKAKGQPR
    901 EPQVYTLPPS RDELTKNQVS LTCLVKGFYP SDIAVEWESN GQPENNYKTT PPVLDSDGSF
    961 FLYSKLTVDK SRWQQGNVFS CSVMHEALHN HYTQKSLSLS PGK*
  • DNA sequence for FVII-059
       1 ATGGTCTCCC AGGCCCTCAG GCTCCTCTGC CTTCTGCTTG GGCTTCAGGG CTGCCTGGCT
      61 GCAGTCTTCG TAACCCAGGA GGAAGCCCAC GGCGTCCTGC ACCGGCGCCG GCGCGCCAAC
     121 GCGTTCCTGG AGGAGCTGCG GCCGGGCTCC CTGGAGAGGG AGTGCAAGGA GGAGCAGTGC
     181 TCCTTCGAGG AGGCCCGGGA GATCTTCAAG GACGCGGAGA GGACGAAGCT GTTCTGGATT
     241 TCTTACAGTG ATGGGGACCA GTGTGCCTCA AGTCCATGCC AGAATGGGGG CTCCTGCAAG
     301 GACCAGCTCC AGTCCTATAT CTGCTTCTGC CTCCCTGCCT TCGAGGGCCG GAACTGTGAG
     361 ACGCACAAGG ATGACCAGCT GATCTGTGTG AACGAGAACG GCGGCTGTGA GCAGTACTGC
     421 AGTGACCACA CGGGCACCAA GCGCTCCTGT CGGTGCCACG AGGGGTACTC TCTGCTGGCA
     481 GACGGGGTGT CCTGCACACC CACAGTTGAA TATCCATGTG GAAAAATACC TATTCTAGAA
     541 AAAAGAAATG CCAGCAAACC CCAAGGCCGA GGTGGCGGTG GCTCCGGCGG AGGTGGGTCC
     601 GGTGGCGGCG GATCAGGTGG GGGTGGATCA GGCGGTGGAG GTTCCGGTGG CGGGGGATCC
     661 GACAAAACTC ACACATGCCC ACCGTGCCCA GCTCCGGAAC TCCTGGGAGG ACCGTCAGTC
     721 TTCCTCTTCC CCCCAAAACC CAAGGACACC CTCATGATCT CCCGGACCCC TGAGGTCACA
     781 TGCGTGGTGG TGGACGTGAG CCACGAAGAC CCTGAGGTCA AGTTCAACTG GTACGTGGAC
     841 GGCGTGGAGG TGCATAATGC CAAGACAAAG CCGCGGGAGG AGCAGTACAA CAGCACGTAC
     901 CGTGTGGTCA GCGTCCTCAC CGTCCTGCAC CAGGACTGGC TGAATGGCAA GGAGTACAAG
     961 TGCAAGGTCT CCAACAAAGC CCTCCCAGCC CCCATCGAGA AAACCATCTC CAAAGCCAAA
    1021 GGGCAGCCCC GAGAACCACA GGTGTACACC CTGCCCCCAT CCCGGGATGA GCTGACCAAG
    1081 AACCAGGTCA GCCTGACCTG CCTGGTCAAA GGCTTCTATC CCAGCGACAT CGCCGTGGAG
    1141 TGGGAGAGCA ATGGGCAGCC GGAGAACAAC TACAAGACCA CGCCTCCCGT GTTGGACTCC
    1201 GACGGCTCCT TCTTCCTCTA CAGCAAGCTC ACCGTCGACA AGAGCAGGTG GCAGCAGGGG
    1261 AACGTCTTCT CATGCTCCGT GATGCATGAG GCTCTGCACA ACCACTACAC GCAGAAGAGC
    1321 CTCTCCCTGT CTCCGGGTAA AGGTGGCGGC GGATCAGGTG GGGGTGGATC AGGCGGTGGA
    1381 GGTTCCGGTG GCGGGGGATC CGGCGGTGGA GGTTCCGGTG GGGGTGGATC AGGAGGAGGT
    1441 GGTTCAACCA CCAAGATCAA GCCCCGGATT GTGGGGGGCA AGGTGTGCCC CAAAGGGGAG
    1501 TGTCCATGGC AGGTCCTGTT GTTGGTGAAT GGAGCTCAGT TGTGTGGGGG GACCCTGATC
    1561 AACACCATCT GGGTGGTCTC CGCGGCCCAC TGTTTCGACA AAATCAAGAA CTGGAGGAAC
    1621 CTGATCGCGG TGCTGGGCGA GCACGACCTC AGCGAGCACG ACGGGGATGA GCAGAGCCGG
    1681 CGGGTGGCGC AGGTCATCAT CCCCAGCACG TACGTCCCGG GCACCACCAA CCACGACATC
    1741 GCGCTGCTCC GCCTGCACCA GCCCGTGGTC CTCACTGACC ATGTGGTGCC CCTCTGCCTG
    1801 CCCGAACGGA CGTTCTCTGA GAGGACGCTG GCCTTCGTGC GCTTCTCATT GGTCAGCGGC
    1861 TGGGGCCAGC TGCTGGACCG TGGCGCCACG GCCCTGGAGC TCATGGTCCT CAACGTGCCC
    1921 CGGCTGATGA CCCAGGACTG CCTGCAGCAG TCACGGAAGG TGGGAGACTC CCCAAATATC
    1981 ACGGAGTACA TGTTCTGTGC CGGCTACTCG GATGGCAGCA AGGACTCCTG CAAGGGGGAC
    2041 AGTGGAGGCC CACATGCCAC CCACTACCGG GGCACGTGGT ACCTGACGGG CATCGTCAGC
    2101 TGGGGCCAGG GCTGCGCAAC CGTGGGCCAC TTTGGGGTGT ACACCAGGGT CTCCCAGTAC
    2161 ATCGAGTGGC TGCAAAAGCT CATGCGCTCA GAGCCACGCC CAGGAGTCCT CCTGCGAGCC
    2221 CCATTTCCCG GTGGCGGTGG CTCCGGCGGA GGTGGGTCCG GTGGCGGCGG ATCAGGTGGG
    2281 GGTGGATCAG GCGGTGGAGG TTCCGGTGGC GGGGGATCAG ACAAAACTCA CACATGCCCA
    2341 CCGTGCCCAG CACCTGAACT CCTGGGAGGA CCGTCAGTCT TCCTCTTCCC CCCAAAACCC
    2401 AAGGACACCC TCATGATCTC CCGGACCCCT GAGGTCACAT GCGTGGTGGT GGACGTGAGC
    2461 CACGAAGACC CTGAGGTCAA GTTCAACTGG TACGTGGACG GCGTGGAGGT GCATAATGCC
    2521 AAGACAAAGC CGCGGGAGGA GCAGTACAAC AGCACGTACC GTGTGGTCAG CGTCCTCACC
    2581 GTCCTGCACC AGGACTGGCT GAATGGCAAG GAGTACAAGT GCAAGGTCTC CAACAAAGCC
    2641 CTCCCAGCCC CCATCGAGAA AACCATCTCC AAAGCCAAAG GGCAGCCCCG AGAACCACAG
    2701 GTGTACACCC TGCCCCCATC CCGGGATGAG CTGACCAAGA ACCAGGTCAG CCTGACCTGC
    2761 CTGGTCAAAG GCTTCTATCC CAGCGACATC GCCGTGGAGT GGGAGAGCAA TGGGCAGCCG
    2821 GAGAACAACT ACAAGACCAC GCCTCCCGTG TTGGACTCCG ACGGCTCCTT CTTCCTCTAC
    2881 AGCAAGCTCA CCGTGGACAA GAGCAGGTGG CAGCAGGGGA ACGTCTTCTC ATGCTCCGTG
    2941 ATGCATGAGG CTCTGCACAA CCACTACACG CAGAAGAGCC TCTCCCTGTC TCCGGGTAAA
    3001 TGA
  • FVII-059 amino acid sequence. Signal sequence is shown in dotted underline, propeptide is double underlined, linker region connecting FVII light chain or heavy chain to Fc region is underlined, linker region connecting the Fc and the thrombin cleavage site is shown in bold, and the thrombin cleavage site is shown in dashed underline
  • 1
    Figure US20210355473A1-20211118-C00018
    61 SFEEAREIFK DAERTKLFWI SYSDGDQCAS SPCQNGGSCK DQLQSYICFC LPAFEGRNCE
    121 THKDDQLICV NENGGCEQYC SDHTGTKRSC RCHEGYSLLA DGVSCTPTVE YPCGKIPILE
    181 KRNASKPQGR GGGGSGGGGS GGGGSGGGGS GGGGSGGGGS DKTHTCPPCP APELLGGPSV
    241 FLFPPKPKDT LMISRTPEVT CVVVDVSHED PEVKFNWYVD GVEVHNAKTK PREEQYNSTY
    301 RVVSVLTVLH QDWLNGKEYK CKVSNKALPA PIEKTISKAK GQPREPQVYT LPPSRDELTK
    361 NQVSLTCLVK GFYPSDIAVE WESNGQPENN YKTTPPVLDS DGSFFLYSKL TVDKSRWQQG
    421 NVFSCSVMHE ALHNHYTQKS LSLSPGKGGG GSGGGGSGGG GSGGGGSGGG GSGGGGSGGG
    481
    Figure US20210355473A1-20211118-C00019
    541 LIAVLGEHDL SEHDGDEQSR RVAQVIIPST YVPGTTNHDI ALLRLHQPVV LTDHVVPLCL
    601 PERTFSERTL AFVRFSLVSG WGQLLDRGAT ALELMVLNVP RLMTQDCLQQ SRKVGDSPNI
    661 TEYMFCAGYS DGSKDSCKGD SGGPHATHYR GTWYLTGIVS WGQGCATVGH FGVYTRVSQY
    721 IEWLQKLMRS EPRPGVLLRA PFPGGGGSGG GGSGGGGSGG GGSGGGGSGG GGSDKTHTCP
    781 PCPAPELLGG PSVFLFPPKP KDTLMISRTP EVTCVVVDVS HEDPEVKFNW YVDGVEVHNA
    841 KTKPREEQYN STYRVVSVLT VLHQDWLNGK EYKCKVSNKA LPAPIEKTIS KAKGQPREPQ
    901 VYTLPPSRDE LTKNQVSLTC LVKGFYPSDI AVEWESNGQP ENNYKTTPPV LDSDGSFFLY
    961 SKLTVDKSRW QQGNVFSCSV MHEALHNHYT QKSLSLSPGK *
  • DNA sequence for FVII-060
    1 ATGGTCTCCC AGGCCCTCAG GCTCCTCTGC CTTCTGCTTG
    GGCTTCAGGG CTGCCTGGCT
    61 GCAGTCTTCG TAACCCAGGA GGAAGCCCAC GGCGTCCTGC
    ACCGGCGCCG GCGCGCCAAC
    121 GCGTTCCTGG AGGAGCTGCG GCCGGGCTCC CTGGAGAGGG
    AGTGCAAGGA GGAGCAGTGC
    181 TCCTTCGAGG AGGCCCGGGA GATCTTCAAG GACGCGGAGA
    GGACGAAGCT GTTCTGGATT
    241 TCTTACAGTG ATGGGGACCA GTGTGCCTCA AGTCCATGCC
    AGAATGGGGG CTCCTGCAAG
    301 GACCAGCTCC AGTCCTATAT CTGCTTCTGC CTCCCTGCCT
    TCGAGGGCCG GAACTGTGAG
    361 ACGCACAAGG ATGACCAGCT GATCTGTGTG AACGAGAACG
    GCGGCTGTGA GCAGTACTGC
    421 AGTGACCACA CGGGCACCAA GCGCTCCTGT CGGTGCCACG
    AGGGGTACTC TCTGCTGGCA
    481 GACGGGGTGT CCTGCACACC CACAGTTGAA TATCCATGTG
    GAAAAATACC TATTCTAGAA
    541 AAAAGAAATG CCAGCAAACC CCAAGGCCGA GGTGGCGGTG
    GCTCCGGCGG AGGTGGGTCC
    601 GGTGGCGGCG GATCAGGTGG GGGTGGATCA GGCGGTGGAG
    GTTCCGGTGG CGGGGGATCC
    661 GACAAAACTC ACACATGCCC ACCGTGCCCA GCTCCGGAAC
    TCCTGGGAGG ACCGTCAGTC
    721 TTCCTCTTCC CCCCAAAACC CAAGGACACC CTCATGATCT
    CCCGGACCCC TGAGGTCACA
    781 TGCGTGGTGG TGGACGTGAG CCACGAAGAC CCTGAGGTCA
    AGTTCAACTG GTACGTGGAC
    841 GGCGTGGAGG TGCATAATGC CAAGACAAAG CCGCGGGAGG
    AGCAGTACAA CAGCACGTAC
    901 CGTGTGGTCA GCGTCCTCAC CGTCCTGCAC CAGGACTGGC
    TGAATGGCAA GGAGTACAAG
    961 TGCAAGGTCT CCAACAAAGC CCTCCCAGCC CCCATCGAGA
    AAACCATCTC CAAAGCCAAA
    1021 GGGCAGCCCC GAGAACCACA GGTGTACACC CTGCCCCCAT
    CCCGGGATGA GCTGACCAAG
    1081 AACCAGGTCA GCCTGACCTG CCTGGTCAAA GGCTTCTATC
    CCAGCGACAT CGCCGTGGAG
    1141 TGGGAGAGCA ATGGGCAGCC GGAGAACAAC TACAAGACCA
    CGCCTCCCGT GTTGGACTCC
    1201 GACGGCTCCT TCTTCCTCTA CAGCAAGCTC ACCGTCGACA
    AGAGCAGGTG GCAGCAGGGG
    1261 AACGTCTTCT CATGCTCCGT GATGCATGAG GCTCTGCACA
    ACCACTACAC GCAGAAGAGC
    1321 CTCTCCCTGT CTCCGGGTAA AGGTGGCGGC GGATCAGGTG
    GGGGTGGATC AGGCGGTGGA
    1381 GGTTCCGGTG GCGGGGGATC CGGCGGTGGA GGTTCCGGTG
    GGGGTGGATC AGGAGGAGGT
    1441 GGTTCAGCCC TGCGGCCCCG GGTGGTGGGC GGCGCCGTGG
    TGGGGGGCAA GGTGTGCCCC
    1501 AAAGGGGAGT GTCCATGGCA GGTCCTGTTG TTGGTGAATG
    GAGCTCAGTT GTGTGGGGGG
    1561 ACCCTGATCA ACACCATCTG GGTGGTCTCC GCGGCCCACT
    GTTTCGACAA AATCAAGAAC
    1621 TGGAGGAACC TGATCGCGGT GCTGGGCGAG CACGACCTCA
    GCGAGCACGA CGGGGATGAG
    1681 CAGAGCCGGC GGGTGGCGCA GGTCATCATC CCCAGCACGT
    ACGTCCCGGG CACCACCAAC
    1741 CACGACATCG CGCTGCTCCG CCTGCACCAG CCCGTGGTCC
    TCACTGACCA TGTGGTGCCC
    1801 CTCTGCCTGC CCGAACGGAC GTTCTCTGAG AGGACGCTGG
    CCTTCGTGCG CTTCTCATTG
    1861 GTCAGCGGCT GGGGCCAGCT GCTGGACCGT GGCGCCACGG
    CCCTGGAGCT CATGGTCCTC
    1921 AACGTGCCCC GGCTGATGAC CCAGGACTGC CTGCAGCAGT
    CACGGAAGGT GGGAGACTCC
    1981 CCAAATATCA CGGAGTACAT GTTCTGTGCC GGCTACTCGG
    ATGGCAGCAA GGACTCCTGC
    2041 AAGGGGGACA GTGGAGGCCC ACATGCCACC CACTACCGGG
    GCACGTGGTA CCTGACGGGC
    2101 ATCGTCAGCT GGGGCCAGGG CTGCGCAACC GTGGGCCACT
    TTGGGGTGTA CACCAGGGTC
    2161 TCCCAGTACA TCGAGTGGCT GCAAAAGCTC ATGCGCTCAG
    AGCCACGCCC AGGAGTCCTC
    2221 CTGCGAGCCC CATTTCCCGG TGGCGGTGGC TCCGGCGGAG
    GTGGGTCCGG TGGCGGCGGA
    2281 TCAGGTGGGG GTGGATCAGG CGGTGGAGGT TCCGGTGGCG
    GGGGATCAGA CAAAACTCAC
    2341 ACATGCCCAC CGTGCCCAGC ACCTGAACTC CTGGGAGGAC
    CGTCAGTCTT CCTCTTCCCC
    2401 CCAAAACCCA AGGACACCCT CATGATCTCC CGGACCCCTG
    AGGTCACATG CGTGGTGGTG
    2461 GACGTGAGCC ACGAAGACCC TGAGGTCAAG TTCAACTGGT
    ACGTGGACGG CGTGGAGGTG
    2521 CATAATGCCA AGACAAAGCC GCGGGAGGAG CAGTACAACA
    GCACGTACCG TGTGGTCAGC
    2581 GTCCTCACCG TCCTGCACCA GGACTGGCTG AATGGCAAGG
    AGTACAAGTG CAAGGTCTCC
    2641 AACAAAGCCC TCCCAGCCCC CATCGAGAAA ACCATCTCCA
    AAGCCAAAGG GCAGCCCCGA
    2701 GAACCACAGG TGTACACCCT GCCCCCATCC CGGGATGAGC
    TGACCAAGAA CCAGGTCAGC
    2761 CTGACCTGCC TGGTCAAAGG CTTCTATCCC AGCGACATCG
    CCGTGGAGTG GGAGAGCAAT
    2821 GGGCAGCCGG AGAACAACTA CAAGACCACG CCTCCCGTGT
    TGGACTCCGA CGGCTCCTTC
    2881 TTCCTCTACA GCAAGCTCAC CGTGGACAAG AGCAGGTGGC
    AGCAGGGGAA CGTCTTCTCA
    2941 TGCTCCGTGA TGCATGAGGC TCTGCACAAC CACTACACGC
    AGAAGAGCCT CTCCCTGTCT
    3001 CCGGGTAAAT GA
  • FVII-060 amino acid sequence. Signal sequence is shown in dotted underline, propeptide is double underlined, linker region connecting FVII light chain or heavy chain to Fc region is underlined, linker region connecting the Fc and the thrombin cleavage site is shown in bold, and the thrombin cleavage site is shown in dashed underline
  • 1
    Figure US20210355473A1-20211118-C00020
    61 SFEEAREIFK DAERTKLFWI SYSDGDQCAS SPCQNGGSCK DQLQSYICFC LPAFEGRNCE
    121 THKDDQLICV NENGGCEQYC SDHTGTKRSC RCHEGYSLLA DGVSCTPTVE YPCGKIPILE
    181 KRNASKPQGR GGGGSGGGGS GGGGSGGGGS GGGGSGGGGS DKTHTCPPCP APELLGGPSV
    241 FLFPPKPKDT LMISRTPEVT CVVVDVSHED PEVKFNWYVD GVEVHNAKTK PREEQYNSTY
    301 RVVSVLTVLH QDWLNGKEYK CKVSNKALPA PIEKTISKAK GQPREPQVYT LPPSRDELTK
    361 NQVSLTCLVK GFYPSDIAVE WESNGQPENN YKTTPPVLDS DGSFFLYSKL TVDKSRWQQG
    421 NVFSCSVMHE ALHNHYTQKS LSLSPGKGGG GSGGGGSGGG GSGGGGSGGG GSGGGGSGGG
    481
    Figure US20210355473A1-20211118-C00021
    541 WRNLIAVLGE HDLSEHDGDE QSRRVAQVII PSTYVPGTTN HDIALLRLHQ PVVLTDHVVP
    601 LCLPERTFSE RTLAFVRFSL VSGWGQLLDR GATALELMVL NVPRLMTQDC LQQSRKVGDS
    661 PNITEYMFCA GYSDGSKDSC KGDSGGPHAT HYRGTWYLTG IVSWGQGCAT VGHFGVYTRV
    721 SQYIEWLQKL MRSEPRPGVL LRAPFPGGGG SGGGGSGGGG SGGGGSGGGG SGGGGSDKTH
    781 TCPPCPAPEL LGGPSVFLFP PKPKDTLMIS RTPEVTCVVV DVSHEDPEVK FNWYVDGVEV
    841 HNAKTKPREE QYNSTYRVVS VLTVLHQDWL NGKEYKCKVS NKALPAPIEK TISKAKGQPR
    901 EPQVYTLPPS RDELTKNQVS LTCLVKGFYP SDIAVEWESN GQPENNYKTT PPVLDSDGSF
    961 FLYSKLTVDK SRWQQGNVFS CSVMHEALHN HYTQKSLSLS PGK*
  • DNA sequence for FVII-061
    1 ATGGTCTCCC AGGCCCTCAG GCTCCTCTGC CTTCTGCTTG
    GGCTTCAGGG CTGCCTGGCT
    61 GCAGTCTTCG TAACCCAGGA GGAAGCCCAC GGCGTCCTGC
    ACCGGCGCCG GCGCGCCAAC
    121 GCGTTCCTGG AGGAGCTGCG GCCGGGCTCC CTGGAGAGGG
    AGTGCAAGGA GGAGCAGTGC
    181 TCCTTCGAGG AGGCCCGGGA GATCTTCAAG GACGCGGAGA
    GGACGAAGCT GTTCTGGATT
    241 TCTTACAGTG ATGGGGACCA GTGTGCCTCA AGTCCATGCC
    AGAATGGGGG CTCCTGCAAG
    301 GACCAGCTCC AGTCCTATAT CTGCTTCTGC CTCCCTGCCT
    TCGAGGGCCG GAACTGTGAG
    361 ACGCACAAGG ATGACCAGCT GATCTGTGTG AACGAGAACG
    GCGGCTGTGA GCAGTACTGC
    421 AGTGACCACA CGGGCACCAA GCGCTCCTGT CGGTGCCACG
    AGGGGTACTC TCTGCTGGCA
    481 GACGGGGTGT CCTGCACACC CACAGTTGAA TATCCATGTG
    GAAAAATACC TATTCTAGAA
    541 AAAAGAAATG CCAGCAAACC CCAAGGCCGA GGTGGCGGTG
    GCTCCGGCGG AGGTGGGTCC
    601 GGTGGCGGCG GATCAGGTGG GGGTGGATCA GGCGGTGGAG
    GTTCCGGTGG CGGGGGATCC
    661 GACAAAACTC ACACATGCCC ACCGTGCCCA GCTCCGGAAC
    TCCTGGGAGG ACCGTCAGTC
    721 TTCCTCTTCC CCCCAAAACC CAAGGACACC CTCATGATCT
    CCCGGACCCC TGAGGTCACA
    781 TGCGTGGTGG TGGACGTGAG CCACGAAGAC CCTGAGGTCA
    AGTTCAACTG GTACGTGGAC
    841 GGCGTGGAGG TGCATAATGC CAAGACAAAG CCGCGGGAGG
    AGCAGTACAA CAGCACGTAC
    901 CGTGTGGTCA GCGTCCTCAC CGTCCTGCAC CAGGACTGGC
    TGAATGGCAA GGAGTACAAG
    961 TGCAAGGTCT CCAACAAAGC CCTCCCAGCC CCCATCGAGA
    AAACCATCTC CAAAGCCAAA
    1021 GGGCAGCCCC GAGAACCACA GGTGTACACC CTGCCCCCAT
    CCCGGGATGA GCTGACCAAG
    1081 AACCAGGTCA GCCTGACCTG CCTGGTCAAA GGCTTCTATC
    CCAGCGACAT CGCCGTGGAG
    1141 TGGGAGAGCA ATGGGCAGCC GGAGAACAAC TACAAGACCA
    CGCCTCCCGT GTTGGACTCC
    1201 GACGGCTCCT TCTTCCTCTA CAGCAAGCTC ACCGTCGACA
    AGAGCAGGTG GCAGCAGGGG
    1261 AACGTCTTCT CATGCTCCGT GATGCATGAG GCTCTGCACA
    ACCACTACAC GCAGAAGAGC
    1321 CTCTCCCTGT CTCCGGGTAA AGGTGGCGGC GGATCAGGTG
    GGGGTGGATC AGGCGGTGGA
    1381 GGTTCCGGTG GCGGGGGATC CGGCGGTGGA GGTTCCGGTG
    GGGGTGGATC AGGAGGAGGT
    1441 GGTTCAGCCC TGCGGCCCCG GGTGGTGGGC GGCGCCATTG
    TGGGGGGCAA GGTGTGCCCC
    1501 AAAGGGGAGT GTCCATGGCA GGTCCTGTTG TTGGTGAATG
    GAGCTCAGTT GTGTGGGGGG
    1561 ACCCTGATCA ACACCATCTG GGTGGTCTCC GCGGCCCACT
    GTTTCGACAA AATCAAGAAC
    1621 TGGAGGAACC TGATCGCGGT GCTGGGCGAG CACGACCTCA
    GCGAGCACGA CGGGGATGAG
    1681 CAGAGCCGGC GGGTGGCGCA GGTCATCATC CCCAGCACGT
    ACGTCCCGGG CACCACCAAC
    1741 CACGACATCG CGCTGCTCCG CCTGCACCAG CCCGTGGTCC
    TCACTGACCA TGTGGTGCCC
    1801 CTCTGCCTGC CCGAACGGAC GTTCTCTGAG AGGACGCTGG
    CCTTCGTGCG CTTCTCATTG
    1861 GTCAGCGGCT GGGGCCAGCT GCTGGACCGT GGCGCCACGG
    CCCTGGAGCT CATGGTCCTC
    1921 AACGTGCCCC GGCTGATGAC CCAGGACTGC CTGCAGCAGT
    CACGGAAGGT GGGAGACTCC
    1981 CCAAATATCA CGGAGTACAT GTTCTGTGCC GGCTACTCGG
    ATGGCAGCAA GGACTCCTGC
    2041 AAGGGGGACA GTGGAGGCCC ACATGCCACC CACTACCGGG
    GCACGTGGTA CCTGACGGGC
    2101 ATCGTCAGCT GGGGCCAGGG CTGCGCAACC GTGGGCCACT
    TTGGGGTGTA CACCAGGGTC
    2161 TCCCAGTACA TCGAGTGGCT GCAAAAGCTC ATGCGCTCAG
    AGCCACGCCC AGGAGTCCTC
    2221 CTGCGAGCCC CATTTCCCGG TGGCGGTGGC TCCGGCGGAG
    GTGGGTCCGG TGGCGGCGGA
    2281 TCAGGTGGGG GTGGATCAGG CGGTGGAGGT TCCGGTGGCG
    GGGGATCAGA CAAAACTCAC
    2341 ACATGCCCAC CGTGCCCAGC ACCTGAACTC CTGGGAGGAC
    CGTCAGTCTT CCTCTTCCCC
    2401 CCAAAACCCA AGGACACCCT CATGATCTCC CGGACCCCTG
    AGGTCACATG CGTGGTGGTG
    2461 GACGTGAGCC ACGAAGACCC TGAGGTCAAG TTCAACTGGT
    ACGTGGACGG CGTGGAGGTG
    2521 CATAATGCCA AGACAAAGCC GCGGGAGGAG CAGTACAACA
    GCACGTACCG TGTGGTCAGC
    2581 GTCCTCACCG TCCTGCACCA GGACTGGCTG AATGGCAAGG
    AGTACAAGTG CAAGGTCTCC
    2641 AACAAAGCCC TCCCAGCCCC CATCGAGAAA ACCATCTCCA
    AAGCCAAAGG GCAGCCCCGA
    2701 GAACCACAGG TGTACACCCT GCCCCCATCC CGGGATGAGC
    TGACCAAGAA CCAGGTCAGC
    2761 CTGACCTGCC TGGTCAAAGG CTTCTATCCC AGCGACATCG
    CCGTGGAGTG GGAGAGCAAT
    2821 GGGCAGCCGG AGAACAACTA CAAGACCACG CCTCCCGTGT
    TGGACTCCGA CGGCTCCTTC
    2881 TTCCTCTACA GCAAGCTCAC CGTGGACAAG AGCAGGTGGC
    AGCAGGGGAA CGTCTTCTCA
    2941 TGCTCCGTGA TGCATGAGGC TCTGCACAAC CACTACACGC
    AGAAGAGCCT CTCCCTGTCT
    3001 CCGGGTAAAT GA
  • FVII-061 amino acid sequence. Signal sequence is shown in dotted underline, propeptide is double underlined, linker region connecting FVII light chain or heavy chain to Fc region is underlined, linker region connecting the Fc and the thrombin cleavage site is shown in bold, and the thrombin cleavage site is shown in dashed underline
  • 1
    Figure US20210355473A1-20211118-C00022
    61 SFEEAREIFK DAERTKLFWI SYSDGDQCAS SPCQNGGSCK DQLQSYICFC LPAFEGRNCE
    121 THKDDQLICV NENGGCEQYC SDHTGTKRSC RCHEGYSLLA DGVSCTPTVE YPCGKIPILE
    181 KRNASKPQGR GGGGSGGGGS GGGGSGGGGS GGGGSGGGGS DKTHTCPPCP APELLGGPSV
    241 FLFPPKPKDT LMISRTPEVT CVVVDVSHED PEVKFNWYVD GVEVHNAKTK PREEQYNSTY
    301 RVVSVLTVLH QDWLNGKEYK CKVSNKALPA PIEKTISKAK GQPREPQVYT LPPSRDELTK
    361 NQVSLTCLVK GFYPSDIAVE WESNGQPENN YKTTPPVLDS DGSFFLYSKL TVDKSRWQQG
    421 NVFSCSVMHE ALHNHYTQKS LSLSPGKGGG GSGGGGSGGG GSGGGGSGGG GSGGGGSGGG
    481
    Figure US20210355473A1-20211118-C00023
    541 WRNLIAVLGE HDLSEHDGDE QSRRVAQVII PSTYVPGTTN HDIALLRLHQ PVVLTDHVVP
    601 LCLPERTFSE RTLAFVRFSL VSGWGQLLDR GATALELMVL NVPRLMTQDC LQQSRKVGDS
    661 PNITEYMFCA GYSDGSKDSC KGDSGGPHAT HYRGTWYLTG IVSWGQGCAT VGHFGVYTRV
    721 SQYIEWLQKL MRSEPRPGVL LRAPFPGGGG SGGGGSGGGG SGGGGSGGGG SGGGGSDKTH
    781 TCPPCPAPEL LGGPSVFLFP PKPKDTLMIS RTPEVTCVVV DVSHEDPEVK FNWYVDGVEV
    841 HNAKTKPREE QYNSTYRVVS VLTVLHQDWL NGKEYKCKVS NKALPAPIEK TISKAKGQPR
    901 EPQVYTLPPS RDELTKNQVS LTCLVKGFYP SDIAVEWESN GQPENNYKTT PPVLDSDGSF
    961 FLYSKLTVDK SRWQQGNVFS CSVMHEALHN HYTQKSLSLS PGK*
  • DNA sequence for FVII-062
    1 ATGGTCTCCC AGGCCCTCAG GCTCCTCTGC CTTCTGCTTG
    GGCTTCAGGG CTGCCTGGCT
    61 GCAGTCTTCG TAACCCAGGA GGAAGCCCAC GGCGTCCTGC
    ACCGGCGCCG GCGCGCCAAC
    121 GCGTTCCTGG AGGAGCTGCG GCCGGGCTCC CTGGAGAGGG
    AGTGCAAGGA GGAGCAGTGC
    181 TCCTTCGAGG AGGCCCGGGA GATCTTCAAG GACGCGGAGA
    GGACGAAGCT GTTCTGGATT
    241 TCTTACAGTG ATGGGGACCA GTGTGCCTCA AGTCCATGCC
    AGAATGGGGG CTCCTGCAAG
    301 GACCAGCTCC AGTCCTATAT CTGCTTCTGC CTCCCTGCCT
    TCGAGGGCCG GAACTGTGAG
    361 ACGCACAAGG ATGACCAGCT GATCTGTGTG AACGAGAACG
    GCGGCTGTGA GCAGTACTGC
    421 AGTGACCACA CGGGCACCAA GCGCTCCTGT CGGTGCCACG
    AGGGGTACTC TCTGCTGGCA
    481 GACGGGGTGT CCTGCACACC CACAGTTGAA TATCCATGTG
    GAAAAATACC TATTCTAGAA
    541 AAAAGAAATG CCAGCAAACC CCAAGGCCGA GGTGGCGGTG
    GCTCCGGCGG AGGTGGGTCC
    601 GGTGGCGGCG GATCAGGTGG GGGTGGATCA GGCGGTGGAG
    GTTCCGGTGG CGGGGGATCA
    661 GACAAAACTC ACACATGCCC ACCGTGCCCA GCTCCGGAAC
    TCCTGGGCGG ACCGTCAGTC
    721 TTCCTCTTCC CCCCAAAACC CAAGGACACC CTCATGATCT
    CCCGGACCCC TGAGGTCACA
    781 TGCGTGGTGG TGGACGTGAG CCACGAAGAC CCTGAGGTCA
    AGTTCAACTG GTACGTGGAC
    841 GGCGTGGAGG TGCATAATGC CAAGACAAAG CCGCGGGAGG
    AGCAGTACAA CAGCACGTAC
    901 CGTGTGGTCA GCGTCCTCAC CGTCCTGCAC CAGGACTGGC
    TGAATGGCAA GGAGTACAAG
    961 TGCAAGGTCT CCAACAAAGC CCTCCCAGCC CCCATCGAGA
    AAACCATCTC CAAAGCCAAA
    1021 GGGCAGCCCC GAGAACCACA GGTGTACACC CTGCCCCCAT
    CCCGGGATGA GCTGACCAAG
    1081 AACCAGGTCA GCCTGACCTG CCTGGTCAAA GGCTTCTATC
    CCAGCGACAT CGCCGTGGAG
    1141 TGGGAGAGCA ATGGGCAGCC GGAGAACAAC TACAAGACCA
    CGCCTCCCGT GTTGGACTCC
    1201 GACGGCTCCT TCTTCCTCTA CAGCAAGCTC ACCGTCGACA
    AGAGCAGGTG GCAGCAGGGG
    1261 AACGTCTTCT CATGCTCCGT GATGCATGAG GCTCTGCACA
    ACCACTACAC GCAGAAGAGC
    1321 CTCTCCCTGT CTCCGGGTAA AGGTGGCGGC GGATCAGGTG
    GGGGTGGATC AGGCGGTGGA
    1381 GGTTCCGGTG GCGGGGGATC CGGCGGTGGA GGTTCCGGTG
    GGGGTGGATC AGGAGGAGGT
    1441 GGTTCAGGTG GTGGAGGATC CATTGTGGGG GGCAAGGTGT
    GCCCCAAAGG GGAGTGTCCA
    1501 TGGCAGGTCC TGTTGTTGGT GAATGGAGCT CAGTTGTGTG
    GGGGGACCCT GATCAACACC
    1561 ATCTGGGTGG TCTCCGCGGC CCACTGTTTC GACAAAATCA
    AGAACTGGAG GAACCTGATC
    1621 GCGGTGCTGG GCGAGCACGA CCTCAGCGAG CACGACGGGG
    ATGAGCAGAG CCGGCGGGTG
    1681 GCGCAGGTCA TCATCCCCAG CACGTACGTC CCGGGCACCA
    CCAACCACGA CATCGCGCTG
    1741 CTCCGCCTGC ACCAGCCCGT GGTCCTCACT GACCATGTGG
    TGCCCCTCTG CCTGCCCGAA
    1801 CGGACGTTCT CTGAGAGGAC GCTGGCCTTC GTGCGCTTCT
    CATTGGTCAG CGGCTGGGGC
    1861 CAGCTGCTGG ACCGTGGCGC CACGGCCCTG GAGCTCATGG
    TCCTCAACGT GCCCCGGCTG
    1921 ATGACCCAGG ACTGCCTGCA GCAGTCACGG AAGGTGGGAG
    ACTCCCCAAA TATCACGGAG
    1981 TACATGTTCT GTGCCGGCTA CTCGGATGGC AGCAAGGACT
    CCTGCAAGGG GGACAGTGGA
    2041 GGCCCACATG CCACCCACTA CCGGGGCACG TGGTACCTGA
    CGGGCATCGT CAGCTGGGGC
    2101 CAGGGCTGCG CAACCGTGGG CCACTTTGGG GTGTACACCA
    GGGTCTCCCA GTACATCGAG
    2161 TGGCTGCAAA AGCTCATGCG CTCAGAGCCA CGCCCAGGAG
    TCCTCCTGCG AGCCCCATTT
    2221 CCCGGTGGCG GTGGCTCCGG CGGAGGTGGG TCCGGTGGCG
    GCGGATCAGG TGGGGGTGGA
    2281 TCAGGCGGTG GAGGTTCCGG TGGCGGGGGA TCAGACAAAA
    CTCACACATG CCCACCGTGC
    2341 CCAGCACCTG AACTCCTGGG AGGACCGTCA GTCTTCCTCT
    TCCCCCCAAA ACCCAAGGAC
    2401 ACCCTCATGA TCTCCCGGAC CCCTGAGGTC ACATGCGTGG
    TGGTGGACGT GAGCCACGAA
    2461 GACCCTGAGG TCAAGTTCAA CTGGTACGTG GACGGCGTGG
    AGGTGCATAA TGCCAAGACA
    2521 AAGCCGCGGG AGGAGCAGTA CAACAGCACG TACCGTGTGG
    TCAGCGTCCT CACCGTCCTG
    2581 CACCAGGACT GGCTGAATGG CAAGGAGTAC AAGTGCAAGG
    TCTCCAACAA AGCCCTCCCA
    2641 GCCCCCATCG AGAAAACCAT CTCCAAAGCC AAAGGGCAGC
    CCCGAGAACC ACAGGTGTAC
    2701 ACCCTGCCCC CATCCCGGGA TGAGCTGACC AAGAACCAGG
    TCAGCCTGAC CTGCCTGGTC
    2761 AAAGGCTTCT ATCCCAGCGA CATCGCCGTG GAGTGGGAGA
    GCAATGGGCA GCCGGAGAAC
    2821 AACTACAAGA CCACGCCTCC CGTGTTGGAC TCCGACGGCT
    CCTTCTTCCT CTACAGCAAG
    2881 CTCACCGTGG ACAAGAGCAG GTGGCAGCAG GGGAACGTCT
    TCTCATGCTC CGTGATGCAT
    2941 GAGGCTCTGC ACAACCACTA CACGCAGAAG AGCCTCTCCC
    TGTCTCCGGG TAAATGA
  • FVII-062 amino acid sequence. Signal sequence is shown in dotted underline, propeptide is double underlined, linker region connecting FVIIa light chain or heavy chain to Fc region is underlined, and linker region connecting the Fc and the FVIIa heavy chain is shown in bold
  • 1
    Figure US20210355473A1-20211118-C00024
    61 SFEEAREIFK DAERTKLFWI SYSDGDQCAS SPCQNGGSCK DQLQSYICFC LPAFEGRNCE
    121 THKDDQLICV NENGGCEQYC SDHTGTKRSC RCHEGYSLLA DGVSCTPTVE YPCGKIPILE
    181 KRNASKPQGR GGGGSGGGGS GGGGSGGGGS GGGGSGGGGS DKTHTCPPCP APELLGGPSV
    241 FLFPPKPKDT LMISRTPEVT CVVVDVSHED PEVKFNWYVD GVEVHNAKTK PREEQYNSTY
    301 RVVSVLTVLH QDWLNGKEYK CKVSNKALPA PIEKTISKAK GQPREPQVYT LPPSRDELTK
    361 NQVSLTCLVK GFYPSDIAVE WESNGQPENN YKTTPPVLDS DGSFFLYSKL TVDKSRWQQG
    421 NVFSCSVMHE ALHNHYTQKS LSLSPGKGGG GSGGGGSGGG GSGGGGSGGG GSGGGGSGGG
    481 GSGGGGSIVG GKVCPKGECP WQVLLLVNGA QLCGGTLINT IWVVSAAHCF DKIKNWRNLI
    541 AVLGEHDLSE HDGDEQSRRV AQVIIPSTYV PGTTNHDIAL LRLHQPVVLT DHVVPLCLPE
    601 RTFSERTLAF VRFSLVSGWG QLLDRGATAL ELMVLNVPRL MTQDCLQQSR KVGDSPNITE
    661 YMFCAGYSDG SKDSCKGDSG GPHATHYRGT WYLTGIVSWG QGCATVGHFG VYTRVSQYIE
    721 WLQKLMRSEP RPGVLLRAPF PGGGGSGGGG SGGGGSGGGG SGGGGSGGGG SDKTHTCPPC
    781 RAPELLGGPS VFLFPPKPKD TLMISRTPEV TCVVVDVSHE DPEVKFNWYV DGVEVHNAKT
    841 KPREEQYNST YRVVSVLTVL HQDWLNGKEY KCKVSNKALP APIEKTISKA KGQPREPQVY
    901 TLPPSRDELT KNQVSLTCLV KGFYPSDIAV EWESNGQPEN NYKTTPPVLD SDGSFFLYSK
    961 LTVDKSRWQQ GNVFSCSVMH EALHNHYTQK SLSLSPGK*
  • DNA sequence for FVII-090
    1 ATGGTCTCCC AGGCCCTCAG GCTCCTCTGC CTTCTGCTTG
    GGCTTCAGGG CTGCCTGGCT
    61 GCAGTCTTCG TAACCCAGGA GGAAGCCCAC GGCGTCCTGC
    ACCGGCGCCG GCGCGCCAAC
    121 GCGTTCCTGG AGGAGCTGCG GCCGGGCTCC CTGGAGAGGG
    AGTGCAAGGA GGAGCAGTGC
    181 TCCTTCGAGG AGGCCCGGGA GATCTTCAAG GACGCGGAGA
    GGACGAAGCT GTTCTGGATT
    241 TCTTACAGTG ATGGGGACCA GTGTGCCTCA AGTCCATGCC
    AGAATGGGGG CTCCTGCAAG
    301 GACCAGCTCC AGTCCTATAT CTGCTTCTGC CTCCCTGCCT
    TCGAGGGCCG GAACTGTGAG
    361 ACGCACAAGG ATGACCAGCT GATCTGTGTG AACGAGAACG
    GCGGCTGTGA GCAGTACTGC
    421 AGTGACCACA CGGGCACCAA GCGCTCCTGT CGGTGCCACG
    AGGGGTACTC TCTGCTGGCA
    481 GACGGGGTGT CCTGCACACC CACAGTTGAA TATCCATGTG
    GAAAAATACC TATTCTAGAA
    541 AAAAGAAATG CCAGCAAACC CCAAGGCCGA GGTGGCGGTG
    GCTCCGGCGG AGGTGGGTCC
    601 GGTGGCGGCG GATCAGGTGG GGGTGGATCA GGCGGTGGAG
    GTTCCGGTGG CGGGGGATCA
    661 GACAAAACTC ACACATGCCC ACCGTGCCCA GCTCCGGAAC
    TCCTGGGCGG ACCGTCAGTC
    721 TTCCTCTTCC CCCCAAAACC CAAGGACACC CTCATGATCT
    CCCGGACCCC TGAGGTCACA
    781 TGCGTGGTGG TGGACGTGAG CCACGAAGAC CCTGAGGTCA
    AGTTCAACTG GTACGTGGAC
    841 GGCGTGGAGG TGCATAATGC CAAGACAAAG CCGCGGGAGG
    AGCAGTACAA CAGCACGTAC
    901 CGTGTGGTCA GCGTCCTCAC CGTCCTGCAC CAGGACTGGC
    TGAATGGCAA GGAGTACAAG
    961 TGCAAGGTCT CCAACAAAGC CCTCCCAGCC CCCATCGAGA
    AAACCATCTC CAAAGCCAAA
    1021 GGGCAGCCCC GAGAACCACA GGTGTACACC CTGCCCCCAT
    CCCGGGATGA GCTGACCAAG
    1081 AACCAGGTCA GCCTGACCTG CCTGGTCAAA GGCTTCTATC
    CCAGCGACAT CGCCGTGGAG
    1141 TGGGAGAGCA ATGGGCAGCC GGAGAACAAC TACAAGACCA
    CGCCTCCCGT GTTGGACTCC
    1201 GACGGCTCCT TCTTCCTCTA CAGCAAGCTC ACCGTCGACA
    AGAGCAGGTG GCAGCAGGGG
    1261 AACGTCTTCT CATGCTCCGT GATGCATGAG GCTCTGCACA
    ACCACTACAC GCAGAAGAGC
    1321 CTCTCCCTGT CTCCGGGTAA AGGTGGCGGC GGATCAGGTG
    GGGGTGGATC AGGCGGTGGA
    1381 GGTTCCGGTG GCGGGGGATC CGGCGGTGGA GGTTCCGGTG
    GGGGTGGATC AGGAGGAGGT
    1441 GGTTCAGCCC TGCGGCCCCG GATTGTGGGG GGCAAGGTGT
    GCCCCAAAGG GGAGTGTCCA
    1501 TGGCAGGTCC TGTTGTTGGT GAATGGAGCT CAGTTGTGTG
    GGGGGACCCT GATCAACACC
    1561 ATCTGGGTGG TCTCCGCGGC CCACTGTTTC GACAAAATCA
    AGAACTGGAG GAACCTGATC
    1621 GCGGTGCTGG GCGAGCACGA CCTCAGCGAG CACGACGGGG
    ATGAGCAGAG CCGGCGGGTG
    1681 GCGCAGGTCA TCATCCCCAG CACGTACGTC CCGGGCACCA
    CCAACCACGA CATCGCGCTG
    1741 CTCCGCCTGC ACCAGCCCGT GGTCCTCACT GACCATGTGG
    TGCCCCTCTG CCTGCCCGAA
    1801 CGGACGTTCT CTGAGAGGAC GCTGGCCTTC GTGCGCTTCT
    CATTGGTCAG CGGCTGGGGC
    1861 CAGCTGCTGG ACCGTGGCGC CACGGCCCTG GAGCTCATGG
    TCCTCAACGT GCCCCGGCTG
    1921 ATGACCCAGG ACTGCCTGCA GCAGTCACGG AAGGTGGGAG
    ACTCCCCAAA TATCACGGAG
    1981 TACATGTTCT GTGCCGGCTA CTCGGATGGC AGCAAGGACT
    CCTGCAAGGG GGACAGTGGA
    2041 GGCCCACATG CCACCCACTA CCGGGGCACG TGGTACCTGA
    CGGGCATCGT CAGCTGGGGC
    2101 CAGGGCTGCG CAACCGTGGG CCACTTTGGG GTGTACACCA
    GGGTCTCCCA GTACATCGAG
    2161 TGGCTGCAAA AGCTCATGCG CTCAGAGCCA CGCCCAGGAG
    TCCTCCTGCG AGCCCCATTT
    2221 CCCGGTGGCG GTGGCTCCGG CGGAGGTGGG TCCGGTGGCG
    GCGGATCAGG TGGGGGTGGA
    2281 TCAGGCGGTG GAGGTTCCGG TGGCGGGGGA TCAGACAAAA
    CTCACACATG CCCACCGTGC
    2341 CCAGCACCTG AACTCCTGGG AGGACCGTCA GTCTTCCTCT
    TCCCCCCAAA ACCCAAGGAC
    2401 ACCCTCATGA TCTCCCGGAC CCCTGAGGTC ACATGCGTGG
    TGGTGGACGT GAGCCACGAA
    2461 GACCCTGAGG TCAAGTTCAA CTGGTACGTG GACGGCGTGG
    AGGTGCATAA TGCCAAGACA
    2521 AAGCCGCGGG AGGAGCAGTA CAACAGCACG TACCGTGTGG
    TCAGCGTCCT CACCGTCCTG
    2581 CACCAGGACT GGCTGAATGG CAAGGAGTAC AAGTGCAAGG
    TCTCCAACAA AGCCCTCCCA
    2641 GCCCCCATCG AGAAAACCAT CTCCAAAGCC AAAGGGCAGC
    CCCGAGAACC ACAGGTGTAC
    2701 ACCCTGCCCC CATCCCGGGA TGAGCTGACC AAGAACCAGG
    TCAGCCTGAC CTGCCTGGTC
    2761 AAAGGCTTCT ATCCCAGCGA CATCGCCGTG GAGTGGGAGA
    GCAATGGGCA GCCGGAGAAC
    2821 AACTACAAGA CCACGCCTCC CGTGTTGGAC TCCGACGGCT
    CCTTCTTCCT CTACAGCAAG
    2881 CTCACCGTGG ACAAGAGCAG GTGGCAGCAG GGGAACGTCT
    TCTCATGCTC CGTGATGCAT
    2941 GAGGCTCTGC ACAACCACTA CACGCAGAAG AGCCTCTCCC
    TGTCTCCGGG TAAATGA
  • FVII-090 amino acid sequence. Signal sequence is shown in dotted underline, propeptide is double underlined, linker region connecting FVII light chain or heavy chain to Fc region is underlined, linker region connecting the Fc and the thrombin cleavage site is shown in bold, and the thrombin cleavage site is shown in dashed underline
  • 1
    Figure US20210355473A1-20211118-C00025
    61 SFEEAREIFK DAERTKLFWI SYSDGDQCAS SPCQNGGSCK DQLQSYICFC LPAFEGRNCE
    121 THKDDQLICV NENGGCEQYC SDHTGTKRSC RCHEGYSLLA DGVSCTPTVE YPCGKIPILE
    181 KRNASKPQGR GGGGSGGGGS GGGGSGGGGS GGGGSGGGGS DKTHTCPPCP APELLGGPSV
    241 FLFPPKPKDT LMISRTPEVT CVVVDVSHED PEVKFNWYVD GVEVHNAKTK PREEQYNSTY
    301 RVVSVLTVLH QDWLNGKEYK CKVSNKALPA PIEKTISKAK GQPREPQVYT LPPSRDELTK
    361 NQVSLTCLVK GFYPSDIAVE WESNGQPENN YKTTPPVLDS DGSFFLYSKL TVDKSRWQQG
    421 NVFSCSVMHE ALHNHYTQKS LSLSPGKGGG GSGGGGSGGG GSGGGGSGGG GSGGGGSGGG
    481
    Figure US20210355473A1-20211118-C00026
    541 AVLGEHDLSE HDGDEQSRRV AQVIIPSTYV PGTTNHDIAL LRLHQPVVLT DHVVPLCLPE
    601 RTFSERTLAF VRFSLVSGWG QLLDRGATAL ELMVLNVPRL MTQDCLQQSR KVGDSPNITE
    661 YMFCAGYSDG SKDSCKGDSG GPHATHYRGT WYLTGIVSWG QGCATVGHFG VYTRVSQYIE
    721 WLQKLMRSEP RPGVLLRAPF PGGGGSGGGG SGGGGSGGGG SGGGGSGGGG SDKTHTCPPC
    781 RAPELLGGPS VFLFPPKPKD TLMISRTPEV TCVVVDVSHE DPEVKFNWYV DGVEVHNAKT
    841 KPREEQYNST YRVVSVLTVL HQDWLNGKEY KCKVSNKALP APIEKTISKA KGQPREPQVY
    901 TLPPSRDELT KNQVSLTCLV KGFYPSDIAV EWESNGQPEN NYKTTPPVLD SDGSFFLYSK
    961 LTVDKSRWQQ GNVFSCSVMH EALHNHYTQK SLSLSPGK*
  • DNA sequence for FVII-100
    1 ATGGTCTCCC AGGCCCTCAG GCTCCTCTGC CTTCTGCTTG
    GGCTTCAGGG CTGCCTGGCT
    61 GCAGTCTTCG TAACCCAGGA GGAAGCCCAC GGCGTCCTGC
    ACCGGCGCCG GCGCGCCAAC
    121 GCGTTCCTGG AGGAGCTGCG GCCGGGCTCC CTGGAGAGGG
    AGTGCAAGGA GGAGCAGTGC
    181 TCCTTCGAGG AGGCCCGGGA GATCTTCAAG GACGCGGAGA
    GGACGAAGCT GTTCTGGATT
    241 TCTTACAGTG ATGGGGACCA GTGTGCCTCA AGTCCATGCC
    AGAATGGGGG CTCCTGCAAG
    301 GACCAGCTCC AGTCCTATAT CTGCTTCTGC CTCCCTGCCT
    TCGAGGGCCG GAACTGTGAG
    361 ACGCACAAGG ATGACCAGCT GATCTGTGTG AACGAGAACG
    GCGGCTGTGA GCAGTACTGC
    421 AGTGACCACA CGGGCACCAA GCGCTCCTGT CGGTGCCACG
    AGGGGTACTC TCTGCTGGCA
    481 GACGGGGTGT CCTGCACACC CACAGTTGAA TATCCATGTG
    GAAAAATACC TATTCTAGAA
    541 AAAAGAAATG CCAGCAAACC CCAAGGCCGA GGTGGCGGTG
    GCTCCGGCGG AGGTGGGTCC
    601 GGTGGCGGCG GATCAGGTGG GGGTGGATCA GGCGGTGGAG
    GTTCCGGTGG CGGGGGATCC
    661 GACAAAACTC ACACATGCCC ACCGTGCCCA GCTCCGGAAC
    TCCTGGGAGG ACCGTCAGTC
    721 TTCCTCTTCC CCCCAAAACC CAAGGACACC CTCATGATCT
    CCCGGACCCC TGAGGTCACA
    781 TGCGTGGTGG TGGACGTGAG CCACGAAGAC CCTGAGGTCA
    AGTTCAACTG GTACGTGGAC
    841 GGCGTGGAGG TGCATAATGC CAAGACAAAG CCGCGGGAGG
    AGCAGTACAA CAGCACGTAC
    901 CGTGTGGTCA GCGTCCTCAC CGTCCTGCAC CAGGACTGGC
    TGAATGGCAA GGAGTACAAG
    961 TGCAAGGTCT CCAACAAAGC CCTCCCAGCC CCCATCGAGA
    AAACCATCTC CAAAGCCAAA
    1021 GGGCAGCCCC GAGAACCACA GGTGTACACC CTGCCCCCAT
    CCCGGGATGA GCTGACCAAG
    1081 AACCAGGTCA GCCTGACCTG CCTGGTCAAA GGCTTCTATC
    CCAGCGACAT CGCCGTGGAG
    1141 TGGGAGAGCA ATGGGCAGCC GGAGAACAAC TACAAGACCA
    CGCCTCCCGT GTTGGACTCC
    1201 GACGGCTCCT TCTTCCTCTA CAGCAAGCTC ACCGTCGACA
    AGAGCAGGTG GCAGCAGGGG
    1261 AACGTCTTCT CATGCTCCGT GATGCATGAG GCTCTGCACA
    ACCACTACAC GCAGAAGAGC
    1321 CTCTCCCTGT CTCCGGGTAA AGGTGGCGGC GGATCAGGTG
    GGGGTGGATC AGGCGGTGGA
    1381 GGTTCCGGTG GCGGGGGATC CGGCGGTGGA GGTTCCGGTG
    GGGGTGGATC AGGAGGAGGT
    1441 GGTTCAGCCC TGCGGCCCCG GATTGTGGGG GGCAAGGTGT
    GCCCCAAAGG GGAGTGTCCA
    1501 TGGCAGGTCC TGTTGTTGGT GAATGGAGCT CAGTTGTGTG
    GGGGGACCCT GATCAACACC
    1561 ATCTGGGTGG TCTCCGCGGC CCACTGTTTC GACAAAATCA
    AGAACTGGAG GAACCTGATC
    1621 GCGGTGCTGG GCGAGCACGA CCTCAGCGAG CACGACGGGG
    ATGAGCAGAG CCGGCGGGTG
    1681 GCGCAGGTCA TCATCCCCAG CACGTACGTC CCGGGCACCA
    CCAACCACGA CATCGCGCTG
    1741 CTCCGCCTGC ACCAGCCCGT GGTCCTCACT GACCATGTGG
    TGCCCCTCTG CCTGCCCGAA
    1801 CGGACGTTCT CTGAGAGGAC GCTGGCCTTC GTGCGCTTCT
    CATTGGTCAG CGGCTGGGGC
    1861 CAGCTGCTGG ACCGTGGCGC CACGGCCCTG GAGCTCATGG
    TCCTCAACGT GCCCCGGCTG
    1921 ATGACCCAGG ACTGCGAGGC CAGCTACCCC GGCAAGATCA
    CGGAGTACAT GTTCTGTGCC
    1981 GGCTACTCGG ATGGCAGCAA GGACTCCTGC AAGGGGGACA
    GTGGAGGCCC ACATGCCACC
    2041 CACTACCGGG GCACGTGGTA CCTGACGGGC ATCGTCAGCT
    GGGGCCAGGG CTGCGCAACC
    2101 GTGGGCCACT TTGGGGTGTA CACCAGGGTC TCCCAGTACA
    TCGAGTGGCT GCAAAAGCTC
    2161 ATGCGCTCAG AGCCACGCCC AGGAGTCCTC CTGCGAGCCC
    CATTTCCCGG TGGCGGTGGC
    2221 TCCGGCGGAG GTGGGTCCGG TGGCGGCGGA TCAGGTGGGG
    GTGGATCAGG CGGTGGAGGT
    2281 TCCGGTGGCG GGGGATCAGA CAAAACTCAC ACATGCCCAC
    CGTGCCCAGC ACCTGAACTC
    2341 CTGGGAGGAC CGTCAGTCTT CCTCTTCCCC CCAAAACCCA
    AGGACACCCT CATGATCTCC
    2401 CGGACCCCTG AGGTCACATG CGTGGTGGTG GACGTGAGCC
    ACGAAGACCC TGAGGTCAAG
    2461 TTCAACTGGT ACGTGGACGG CGTGGAGGTG CATAATGCCA
    AGACAAAGCC GCGGGAGGAG
    2521 CAGTACAACA GCACGTACCG TGTGGTCAGC GTCCTCACCG
    TCCTGCACCA GGACTGGCTG
    2581 AATGGCAAGG AGTACAAGTG CAAGGTCTCC AACAAAGCCC
    TCCCAGCCCC CATCGAGAAA
    2641 ACCATCTCCA AAGCCAAAGG GCAGCCCCGA GAACCACAGG
    TGTACACCCT GCCCCCATCC
    2701 CGGGATGAGC TGACCAAGAA CCAGGTCAGC CTGACCTGCC
    TGGTCAAAGG CTTCTATCCC
    2761 AGCGACATCG CCGTGGAGTG GGAGAGCAAT GGGCAGCCGG
    AGAACAACTA CAAGACCACG
    2821 CCTCCCGTGT TGGACTCCGA CGGCTCCTTC TTCCTCTACA
    GCAAGCTCAC CGTGGACAAG
    2881 AGCAGGTGGC AGCAGGGGAA CGTCTTCTCA TGCTCCGTGA
    TGCATGAGGC TCTGCACAAC
    2941 CACTACACGC AGAAGAGCCT CTCCCTGTCT
    CCGGGTAAAT GA
  • FVII-100 amino acid sequence. Signal sequence is shown in dotted underline, propeptide is double underlined, linker region connecting FVII light chain or heavy chain to Fc region is underlined, linker region connecting the Fc and the thrombin cleavage site is shown in bold, the thrombin cleavage site is shown in dashed underline, and the trypsin 170 loop region is wave underlined
  • 1
    Figure US20210355473A1-20211118-C00027
    61 SFEEAREIFK DAERTKLFWI SYSDGDQCAS SPCQNGGSCK DQLQSYICFC LPAFEGRNCE
    121 THKDDQLICV NENGGCEQYC SDHTGTKRSC RCHEGYSLLA DGVSCTPTVE YPCGKIPILE
    181 KRNASKPQGR GGGGSGGGGS GGGGSGGGGS GGGGSGGGGS DKTHTCPPCP APELLGGPSV
    241 FLFPPKPKDT LMISRTPEVT CVVVDVSHED PEVKFNWYVD GVEVHNAKTK PREEQYNSTY
    301 RVVSVLTVLH QDWLNGKEYK CKVSNKALPA PIEKTISKAK GQPREPQVYT LPPSRDELTK
    361 NQVSLTCLVK GFYPSDIAVE WESNGQPENN YKTTPPVLDS DGSFFLYSKL TVDKSRWQQG
    421 NVFSCSVMHE ALHNHYTQKS LSLSPGKGGG GSGGGGSGGG GSGGGGSGGG GSGGGGSGGG
    481
    Figure US20210355473A1-20211118-C00028
    541 AVLGEHDLSE HDGDEQSRRV AQVIIPSTYV PGTTNHDIAL LRLHQPVVLT DHVVPLCLPE
    601
    Figure US20210355473A1-20211118-C00029
    661 GYSDGSKDSC KGDSGGPHAT HYRGTWYLTG IVSWGQGCAT VGHFGVYTRV SQYIEWLQKL
    721 MRSEPRPGVL LRAPFPGGGG SGGGGSGGGG SGGGGSGGGG SGGGGSDKTH TCPPCPAPEL
    781 LGGPSVFLFP PKPKDTLMIS RTPEVTCVVV DVSHEDPEVK FNWYVDGVEV HNAKTKPREE
    841 QYNSTYRVVS VLTVLHQDWL NGKEYKCKVS NKALPAPIEK TISKAKGQPR EPQVYTLPPS
    901 RDELTKNQVS LTCLVKGFYP SDIAVEWESN GQPENNYKTT PPVLDSDGSF FLYSKLTVDK
    961 SRWQQGNVFS CSVMHEALHN HYTQKSLSLS PGK*
  • DNA sequence for FVII-115
    1 ATGGTCTCCC AGGCCCTCAG GCTCCTCTGC CTTCTGCTTG
    GGCTTCAGGG CTGCCTGGCT
    61 GCAGTCTTCG TAACCCAGGA GGAAGCCCAC GGCGTCCTGC
    ACCGGCGCCG GCGCGCCAAC
    121 GCGTTCCTGG AGGAGCTGCG GCCGGGCTCC CTGGAGAGGG
    AGTGCAAGGA GGAGCAGTGC
    181 TCCTTCGAGG AGGCCCGGGA GATCTTCAAG GACGCGGAGA
    GGACGAAGCT GTTCTGGATT
    241 TCTTACAGTG ATGGGGACCA GTGTGCCTCA AGTCCATGCC
    AGAATGGGGG CTCCTGCAAG
    301 GACCAGCTCC AGTCCTATAT CTGCTTCTGC CTCCCTGCCT
    TCGAGGGCCG GAACTGTGAG
    361 ACGCACAAGG ATGACCAGCT GATCTGTGTG AACGAGAACG
    GCGGCTGTGA GCAGTACTGC
    421 AGTGACCACA CGGGCACCAA GCGCTCCTGT CGGTGCCACG
    AGGGGTACTC TCTGCTGGCA
    481 GACGGGGTGT CCTGCACACC CACAGTTGAA TATCCATGTG
    GAAAAATACC TATTCTAGAA
    541 AAAAGAAATG CCAGCAAACC CCAAGGCCGA GGTGGCGGTG
    GCTCCGGCGG AGGTGGGTCC
    601 GGTGGCGGCG GATCAGGTGG GGGTGGATCA GGCGGTGGAG
    GTTCCGGTGG CGGGGGATCA
    661 GACAAAACTC ACACATGCCC ACCGTGCCCA GCTCCGGAAC
    TCCTGGGCGG ACCGTCAGTC
    721 TTCCTCTTCC CCCCAAAACC CAAGGACACC CTCATGATCT
    CCCGGACCCC TGAGGTCACA
    781 TGCGTGGTGG TGGACGTGAG CCACGAAGAC CCTGAGGTCA
    AGTTCAACTG GTACGTGGAC
    841 GGCGTGGAGG TGCATAATGC CAAGACAAAG CCGCGGGAGG
    AGCAGTACAA CAGCACGTAC
    901 CGTGTGGTCA GCGTCCTCAC CGTCCTGCAC CAGGACTGGC
    TGAATGGCAA GGAGTACAAG
    961 TGCAAGGTCT CCAACAAAGC CCTCCCAGCC CCCATCGAGA
    AAACCATCTC CAAAGCCAAA
    1021 GGGCAGCCCC GAGAACCACA GGTGTACACC CTGCCCCCAT
    CCCGGGATGA GCTGACCAAG
    1081 AACCAGGTCA GCCTGACCTG CCTGGTCAAA GGCTTCTATC
    CCAGCGACAT CGCCGTGGAG
    1141 TGGGAGAGCA ATGGGCAGCC GGAGAACAAC TACAAGACCA
    CGCCTCCCGT GTTGGACTCC
    1201 GACGGCTCCT TCTTCCTCTA CAGCAAGCTC ACCGTCGACA
    AGAGCAGGTG GCAGCAGGGG
    1261 AACGTCTTCT CATGCTCCGT GATGCATGAG GCTCTGCACA
    ACCACTACAC GCAGAAGAGC
    1321 CTCTCCCTGT CTCCGGGTAA AGGTGGCGGC GGATCAGGTG
    GGGGTGGATC AGGCGGTGGA
    1381 GGTTCCGGTG GCGGGGGATC CGGCGGTGGA GGTTCCGGTG
    GGGGTGGATC AGGAGGAGGT
    1441 GGTTCAGCCC TGCGGCCCCG GATTGTGGGG GGCAAGGACT
    GCCCCAAAGG GGAGTGTCCA
    1501 TGGCAGGTCC TGTTGTTGGT GAATGGAGCT CAGTTGTGTG
    GGGGGACCCT GATCAACACC
    1561 ATCTGGGTGG TCTCCGCGGC CCACTGTTTC GACAAAATCA
    AGAACTGGAG GAACCTGATC
    1621 GCGGTGCTGG GCGAGCACGA CCTCAGCGAG CACGACGGGG
    ATGAGCAGAG CCGGCGGGTG
    1681 GCGCAGGTCA TCATCCCCAG CACGTACGTC CCGGGCACCA
    CCAACCACGA CATCGCGCTG
    1741 CTCCGCCTGC ACCAGCCCGT GGTCCTCACT GACCATGTGG
    TGCCCCTCTG CCTGCCCGAA
    1801 CGGACGTTCT CTGAGAGGAC GCTGGCCTTC GTGCGCTTCT
    CATTGGTCAG CGGCTGGGGC
    1861 CAGCTGCTGG ACCGTGGCGC CACGGCCCTG GTACTCCAAG
    TCCTCAACGT GCCCCGGCTG
    1921 ATGACCCAGG ACTGCCTGCA GCAGTCACGG AAGGTGGGAG
    ACTCCCCAAA TATCACGGAG
    1981 TACATGTTCT GTGCCGGCTA CTCGGATGGC AGCAAGGACT
    CCTGCAAGGG GGACAGTGGA
    2041 GGCCCACATG CCACCCACTA CCGGGGCACG TGGTACCTGA
    CGGGCATCGT CAGCTGGGGC
    2101 CAGGGCTGCG CAACCGTGGG CCACTTTGGG GTGTACACCA
    GGGTCTCCCA GTACATCGAG
    2161 TGGCTGCAAA AGCTCATGCG CTCAGAGCCA CGCCCAGGAG
    TCCTCCTGCG AGCCCCATTT
    2221 CCCGGTGGCG GTGGCTCCGG CGGAGGTGGG TCCGGTGGCG
    GCGGATCAGG TGGGGGTGGA
    2281 TCAGGCGGTG GAGGTTCCGG TGGCGGGGGA TCAGACAAAA
    CTCACACATG CCCACCGTGC
    2341 CCAGCACCTG AACTCCTGGG AGGACCGTCA GTCTTCCTCT
    TCCCCCCAAA ACCCAAGGAC
    2401 ACCCTCATGA TCTCCCGGAC CCCTGAGGTC ACATGCGTGG
    TGGTGGACGT GAGCCACGAA
    2461 GACCCTGAGG TCAAGTTCAA CTGGTACGTG GACGGCGTGG
    AGGTGCATAA TGCCAAGACA
    2521 AAGCCGCGGG AGGAGCAGTA CAACAGCACG TACCGTGTGG
    TCAGCGTCCT CACCGTCCTG
    2581 CACCAGGACT GGCTGAATGG CAAGGAGTAC AAGTGCAAGG
    TCTCCAACAA AGCCCTCCCA
    2641 GCCCCCATCG AGAAAACCAT CTCCAAAGCC AAAGGGCAGC
    CCCGAGAACC ACAGGTGTAC
    2701 ACCCTGCCCC CATCCCGGGA TGAGCTGACC AAGAACCAGG
    TCAGCCTGAC CTGCCTGGTC
    2761 AAAGGCTTCT ATCCCAGCGA CATCGCCGTG GAGTGGGAGA
    GCAATGGGCA GCCGGAGAAC
    2821 AACTACAAGA CCACGCCTCC CGTGTTGGAC TCCGACGGCT
    CCTTCTTCCT CTACAGCAAG
    2881 CTCACCGTGG ACAAGAGCAG GTGGCAGCAG GGGAACGTCT
    TCTCATGCTC CGTGATGCAT
    2941 GAGGCTCTGC ACAACCACTA CACGCAGAAG AGCCTCTCCC
    TGTCTCCGGG TAAATGA
  • FVII-115 amino acid sequence. Signal sequence is shown in dotted underline, propeptide is double underlined, linker region connecting FVII light chain or heavy chain to Fc region is underlined, linker region connecting the Fc and the thrombin cleavage site is shown in bold, the thrombin cleavage site is shown in dashed underline, and the three point mutations in FVIIa (V158D, E296V and M298Q) are in bold and underlined
  • 1
    Figure US20210355473A1-20211118-C00030
    61 SFEEAREIFK DAERTKLFWI SYSDGDQCAS SPCQNGGSCK DQLQSYICFC LPAFEGRNCE
    121 THKDDQLICV NENGGCEQYC SDHTGTKRSC RCHEGYSLLA DGVSCTPTVE YPCGKIPILE
    181 KRNASKPQGR GGGGSGGGGS GGGGSGGGGS GGGGSGGGGS DKTHTCPPCP APELLGGPSV
    241 FLFPPKPKDT LMISRTPEVT CVVVDVSHED PEVKFNWYVD GVEVHNAKTK PREEQYNSTY
    301 RVVSVLTVLH QDWLNGKEYK CKVSNKALPA PIEKTISKAK GQPREPQVYT LPPSRDELTK
    361 NQVSLTCLVK GFYPSDIAVE WESNGQPENN YKTTPPVLDS DGSFFLYSKL TVDKSRWQQG
    421 NVFSCSVMHE ALHNHYTQKS LSLSPGKGGG GSGGGGSGGG GSGGGGSGGG GSGGGGSGGG
    481
    Figure US20210355473A1-20211118-C00031
    541 AVLGEHDLSE HDGDEQSRRV AQVIIPSTYV PGTTNHDIAL LRLHQPVVLT DHVVPLCLPE
    601 RTFSERTLAF VRFSLVSGWG QLLDRGATAL  V L Q VLNVPRL MTQDCLQQSR KVGDSPNITE
    661 YMFCAGYSDG SKDSCKGDSG GPHATHYRGT WYLTGIVSWG QGCATVGHFG VYTRVSQYIE
    721 WLQKLMRSEP RPGVLLRAPF PGGGGSGGGGSGGGGSGGGG SGGGGSGGGGSDKTHTCPPC
    781 RAPELLGGPS VFLFPPKPKD TLMISRTPEV TCVVVDVSHE DPEVKFNWYV DGVEVHNAKT
    841 KPREEQYNST YRVVSVLTVL HQDWLNGKEY KCKVSNKALP APIEKTISKA KGQPREPQVY
    901 TLPPSRDELT KNQVSLTCLV KGFYPSDIAV EWESNGQPEN NYKTTPPVLD SDGSFFLYSK
    961 LTVDKSRWQQ GNVFSCSVMH EALHNHYTQK SLSLSPGK*
  • DNA sequence for FVII-118
    1 ATGGTCTCCC AGGCCCTCAG GCTCCTCTGC CTTCTGCTTG
    GGCTTCAGGG CTGCCTGGCT
    61 GCAGTCTTCG TAACCCAGGA GGAAGCCCAC GGCGTCCTGC
    ACCGGCGCCG GCGCGCCAAC
    121 GCGTTCCTGG AGGAGCTGCG GCCGGGCTCC CTGGAGAGGG
    AGTGCAAGGA GGAGCAGTGC
    181 TCCTTCGAGG AGGCCCGGGA GATCTTCAAG GACGCGGAGA
    GGACGAAGCT GTTCTGGATT
    241 TCTTACAGTG ATGGGGACCA GTGTGCCTCA AGTCCATGCC
    AGAATGGGGG CTCCTGCAAG
    301 GACCAGCTCC AGTCCTATAT CTGCTTCTGC CTCCCTGCCT
    TCGAGGGCCG GAACTGTGAG
    361 ACGCACAAGG ATGACCAGCT GATCTGTGTG AACGAGAACG
    GCGGCTGTGA GCAGTACTGC
    421 AGTGACCACA CGGGCACCAA GCGCTCCTGT CGGTGCCACG
    AGGGGTACTC TCTGCTGGCA
    481 GACGGGGTGT CCTGCACACC CACAGTTGAA TATCCATGTG
    GAAAAATACC TATTCTAGAA
    541 AAAAGAAATG CCAGCAAACC CCAAGGCGCC CTGCGGCCCC
    GGATTGTGGG GGGCAAGGTG
    601 TGCCCCAAAG GGGAGTGTCC ATGGCAGGTC CTGTTGTTGG
    TGAATGGAGC TCAGTTGTGT
    661 GGGGGGACCC TGATCAACAC CATCTGGGTG GTCTCCGCGG
    CCCACTGTTT CGACAAAATC
    721 AAGAACTGGA GGAACCTGAT CGCGGTGCTG GGCGAGCACG
    ACCTCAGCGA GCACGACGGG
    781 GATGAGCAGA GCCGGCGGGT GGCGCAGGTC ATCATCCCCA
    GCACGTACGT CCCGGGCACC
    841 ACCAACCACG ACATCGCGCT GCTCCGCCTG CACCAGCCCG
    TGGTCCTCAC TGACCATGTG
    901 GTGCCCCTCT GCCTGCCCGA ACGGACGTTC TCTGAGAGGA
    CGCTGGCCTT CGTGCGCTTC
    961 TCATTGGTCA GCGGCTGGGG CCAGCTGCTG GACCGTGGCG
    CCACGGCCCT GGAGCTCATG
    1021 GTCCTCAACG TGCCCCGGCT GATGACCCAG GACTGCCTGC
    AGCAGTCACG GAAGGTGGGA
    1081 GACTCCCCAA ATATCACGGA GTACATGTTC TGTGCCGGCT
    ACTCGGATGG CAGCAAGGAC
    1141 TCCTGCAAGG GGGACAGTGG AGGCCCACAT GCCACCCACT
    ACCGGGGCAC GTGGTACCTG
    1201 ACGGGCATCG TCAGCTGGGG CCAGGGCTGC GCAACCGTGG
    GCCACTTTGG GGTGTACACC
    1261 AGGGTCTCCC AGTACATCGA GTGGCTGCAA AAGCTCATGC
    GCTCAGAGCC ACGCCCAGGA
    1321 GTCCTCCTGC GAGCCCCATT TCCCGGTGGC GGTGGCTCCG
    GCGGAGGTGG GTCCGGTGGC
    1381 GGCGGATCAG GTGGGGGTGG ATCAGGCGGT GGAGGTTCCG
    GTGGCGGGGG ATCCGACAAA
    1441 ACTCACACAT GCCCACCGTG CCCAGCTCCG GAACTCCTGG
    GCGGACCGTC AGTCTTCCTC
    1501 TTCCCCCCAA AACCCAAGGA CACCCTCATG ATCTCCCGGA
    CCCCTGAGGT CACATGCGTG
    1561 GTGGTGGACG TGAGCCACGA AGACCCTGAG GTCAAGTTCA
    ACTGGTACGT GGACGGCGTG
    1621 GAGGTGCATA ATGCCAAGAC AAAGCCGCGG GAGGAGCAGT
    ACAACAGCAC GTACCGTGTG
    1681 GTCAGCGTCC TCACCGTCCT GCACCAGGAC TGGCTGAATG
    GCAAGGAGTA CAAGTGCAAG
    1741 GTCTCCAACA AAGCCCTCCC AGCCCCCATC GAGAAAACCA
    TCTCCAAAGC CAAAGGGCAG
    1801 CCCCGAGAAC CACAGGTGTA CACCCTGCCC CCATCCCGGG
    ATGAGCTGAC CAAGAACCAG
    1861 GTCAGCCTGA CCTGCCTGGT CAAAGGCTTC TATCCCAGCG
    ACATCGCCGT GGAGTGGGAG
    1921 AGCAATGGGC AGCCGGAGAA CAACTACAAG ACCACGCCTC
    CCGTGTTGGA CTCCGACGGC
    1981 TCCTTCTTCC TCTACAGCAA GCTCACCGTG GACAAGAGCA
    GGTGGCAGCA GGGGAACGTC
    2041 TTCTCATGCT CCGTGATGCA TGAGGCTCTG CACAACCACT
    ACACGCAGAA GAGCCTCTCC
    2101 CTGTCTCCGG GTAAAGGTGG CGGCGGATCA GGTGGGGGTG
    GATCAGGCGG TGGAGGTTCC
    2161 GGTGGCGGGG GATCAGACAA AACTCACACA TGCCCACCGT
    GCCCAGCACC TGAACTCCTG
    2221 GGAGGACCGT CAGTCTTCCT CTTCCCCCCA AAACCCAAGG
    ACACCCTCAT GATCTCCCGG
    2281 ACCCCTGAGG TCACATGCGT GGTGGTGGAC GTGAGCCACG
    AAGACCCTGA GGTCAAGTTC
    2341 AACTGGTACG TGGACGGCGT GGAGGTGCAT AATGCCAAGA
    CAAAGCCGCG GGAGGAGCAG
    2401 TACAACAGCA CGTACCGTGT GGTCAGCGTC CTCACCGTCC
    TGCACCAGGA CTGGCTGAAT
    2461 GGCAAGGAGT ACAAGTGCAA GGTCTCCAAC AAAGCCCTCC
    CAGCCCCCAT CGAGAAAACC
    2521 ATCTCCAAAG CCAAAGGGCA GCCCCGAGAA CCACAGGTGT
    ACACCCTGCC CCCATCCCGC
    2581 GATGAGCTGA CCAAGAACCA GGTCAGCCTG ACCTGCCTGG
    TCAAAGGCTT CTATCCCAGC
    2641 GACATCGCCG TGGAGTGGGA GAGCAATGGG CAGCCGGAGA
    ACAACTACAA GACCACGCCT
    2701 CCCGTGTTGG ACTCCGACGG CTCCTTCTTC CTCTACAGCA
    AGCTCACCGT GGACAAGAGC
    2761 AGGTGGCAGC AGGGGAACGT CTTCTCATGC TCCGTGATGC
    ATGAGGCTCT GCACAACCAC
    2821 TACACGCAGA AGAGCCTCTC CCTGTCTCCG GGTAAATGA
  • FVII-118 amino acid sequence. Signal sequence is shown in dotted underline, propeptide is double underlined, the thrombin cleavage site is shown in dashed underline, the linker region connecting FVII heavy chain to Fc region is underlined, and the linker region connecting the Fc regions is shown in bold
  • 1
    Figure US20210355473A1-20211118-C00032
    61 SFEEAREIFK DAERTKLFWI SYSDGDQCAS SPCQNGGSCK DQLQSYICFC LPAFEGRNCE
    121 THKDDQLICV NENGGCEQYC SDHTGTKRSC RCHEGYSLLA DGVSCTPTVE YPCGKIPILE
    181
    Figure US20210355473A1-20211118-C00033
    241 KNWRNLIAVL GEHDLSEHDG DEQSRRVAQV IIPSTYVPGT TNHDIALLRL HQPVVLTDHV
    301 VPLCLPERTF SERTLAFVRF SLVSGWGQLL DRGATALELM VLNVPRLMTQ DCLQQSRKVG
    361 DSPNITEYMF CAGYSDGSKD SCKGDSGGPH ATHYRGTWYL TGIVSWGQGC ATVGHFGVYT
    421 RVSQYIEWLQ KLMRSEPRPG VLLRAPFPGG GGSGGGGSGG GGSGGGGSGG GGSGGGGSDK
    481 THTCPPCPAP ELLGGPSVFL FPPKPKDTLM ISRTPEVTCV VVDVSHEDPE VKFNWYVDGV
    541 EVHNAKTKPR EEQYNSTYRV VSVLTVLHQD WLNGKEYKCK VSNKALPAPI EKTISKAKGQ
    601 PREPQVYTLP PSRDELTKNQ VSLTCLVKGF YPSDIAVEWE SNGQPENNYK TTPPVLDSDG
    661 SFFLYSKLTV DKSRWQQGNV FSCSVMHEAL HNHYTQKSLS LSPGKGGGGS GGGGSGGGGS
    721 GGGGSDKTHT CPPCPAPELL GGPSVFLFPP KPKDTLMISR TPEVTCVVVD VSHEDPEVKF
    781 NWYVDGVEVH NAKTKPREEQ YNSTYRVVSV LTVLHQDWLN GKEYKCKVSN KALPAPIEKT
    841 ISKAKGQPRE PQVYTLPPSR DELTKNQVSL TCLVKGFYPS DIAVEWESNG QPENNYKTTP
    901 PVLDSDGSFF LYSKLTVDKS RWQQGNVFSC SVMHEALHNH YTQKSLSLSP GK*
  • DNA sequence for FVII-119
    1 ATGGTCTCCC AGGCCCTCAG GCTCCTCTGC 
    GGCTTCAGGG CTGCCTGGCT
    61 GCAGTCTTCG TAACCCAGGA GGAAGCCCAC GGCGTCCTGC
    ACCGGCGCCG GCGCGCCAAC
    121 GCGTTCCTGG AGGAGCTGCG GCCGGGCTCC CTGGAGAGGG
    AGTGCAAGGA GGAGCAGTGC
    181 TCCTTCGAGG AGGCCCGGGA GATCTTCAAG GACGCGGAGA
    GGACGAAGCT GTTCTGGATT
    241 TCTTACAGTG ATGGGGACCA GTGTGCCTCA AGTCCATGCC
    AGAATGGGGG CTCCTGCAAG
    301 GACCAGCTCC AGTCCTATAT CTGCTTCTGC CTCCCTGCCT
    TCGAGGGCCG GAACTGTGAG
    361 ACGCACAAGG ATGACCAGCT GATCTGTGTG AACGAGAACG
    GCGGCTGTGA GCAGTACTGC
    421 AGTGACCACA CGGGCACCAA GCGCTCCTGT CGGTGCCACG
    AGGGGTACTC TCTGCTGGCA
    481 GACGGGGTGT CCTGCACACC CACAGTTGAA TATCCATGTG
    GAAAAATACC TATTCTAGAA
    541 AAAAGAAATG CCAGCAAACC CCAAGGCGGA GGAGGTGGTT
    CAGCCCTGCG GCCCCGGATT
    601 GTGGGGGGCA AGGTGTGCCC CAAAGGGGAG TGTCCATGGC
    AGGTCCTGTT GTTGGTGAAT
    661 GGAGCTCAGT TGTGTGGGGG GACCCTGATC AACACCATCT
    GGGTGGTCTC CGCGGCCCAC
    721 TGTTTCGACA AAATCAAGAA CTGGAGGAAC CTGATCGCGG
    TGCTGGGCGA GCACGACCTC
    781 AGCGAGCACG ACGGGGATGA GCAGAGCCGG CGGGTGGCGC
    AGGTCATCAT CCCCAGCACG
    841 TACGTCCCGG GCACCACCAA CCACGACATC GCGCTGCTCC
    GCCTGCACCA GCCCGTGGTC
    901 CTCACTGACC ATGTGGTGCC CCTCTGCCTG CCCGAACGGA
    CGTTCTCTGA GAGGACGCTG
    961 GCCTTCGTGC GCTTCTCATT GGTCAGCGGC TGGGGCCAGC
    TGCTGGACCG TGGCGCCACG
    1021 GCCCTGGAGC TCATGGTCCT CAACGTGCCC CGGCTGATGA
    CCCAGGACTG CCTGCAGCAG
    1081 TCACGGAAGG TGGGAGACTC CCCAAATATC ACGGAGTACA
    TGTTCTGTGC CGGCTACTCG
    1141 GATGGCAGCA AGGACTCCTG CAAGGGGGAC AGTGGAGGCC
    CACATGCCAC CCACTACCGG
    1201 GGCACGTGGT ACCTGACGGG CATCGTCAGC TGGGGCCAGG
    GCTGCGCAAC CGTGGGCCAC
    1261 TTTGGGGTGT ACACCAGGGT CTCCCAGTAC ATCGAGTGGC
    TGCAAAAGCT CATGCGCTCA
    1321 GAGCCACGCC CAGGAGTCCT CCTGCGAGCC CCATTTCCCG
    GTGGCGGTGG CTCCGGCGGA
    1381 GGTGGGTCCG GTGGCGGCGG ATCAGGTGGG GGTGGATCAG
    GCGGTGGAGG TTCCGGTGGC
    1441 GGGGGATCCG ACAAAACTCA CACATGCCCA CCGTGCCCAG
    CTCCGGAACT CCTGGGCGGA
    1501 CCGTCAGTCT TCCTCTTCCC CCCAAAACCC AAGGACACCC
    TCATGATCTC CCGGACCCCT
    1561 GAGGTCACAT GCGTGGTGGT GGACGTGAGC CACGAAGACC
    CTGAGGTCAA GTTCAACTGG
    1621 TACGTGGACG GCGTGGAGGT GCATAATGCC AAGACAAAGC
    CGCGGGAGGA GCAGTACAAC
    1681 AGCACGTACC GTGTGGTCAG CGTCCTCACC GTCCTGCACC
    AGGACTGGCT GAATGGCAAG
    1741 GAGTACAAGT GCAAGGTCTC CAACAAAGCC CTCCCAGCCC
    CCATCGAGAA AACCATCTCC
    1801 AAAGCCAAAG GGCAGCCCCG AGAACCACAG GTGTACACCC
    TGCCCCCATC CCGGGATGAG
    1861 CTGACCAAGA ACCAGGTCAG CCTGACCTGC CTGGTCAAAG
    GCTTCTATCC CAGCGACATC
    1921 GCCGTGGAGT GGGAGAGCAA TGGGCAGCCG GAGAACAACT
    ACAAGACCAC GCCTCCCGTG
    1981 TTGGACTCCG ACGGCTCCTT CTTCCTCTAC AGCAAGCTCA
    CCGTGGACAA GAGCAGGTGG
    2041 CAGCAGGGGA ACGTCTTCTC ATGCTCCGTG ATGCATGAGG
    CTCTGCACAA CCACTACACG
    2101 CAGAAGAGCC TCTCCCTGTC TCCGGGTAAA GGTGGCGGCG
    GATCAGGTGG GGGTGGATCA
    2161 GGCGGTGGAG GTTCCGGTGG CGGGGGATCA GACAAAACTC
    ACACATGCCC ACCGTGCCCA
    2221 GCACCTGAAC TCCTGGGAGG ACCGTCAGTC TTCCTCTTCC
    CCCCAAAACC CAAGGACACC
    2281 CTCATGATCT CCCGGACCCC TGAGGTCACA TGCGTGGTGG
    TGGACGTGAG CCACGAAGAC
    2341 CCTGAGGTCA AGTTCAACTG GTACGTGGAC GGCGTGGAGG
    TGCATAATGC CAAGACAAAG
    2401 CCGCGGGAGG AGCAGTACAA CAGCACGTAC CGTGTGGTCA
    GCGTCCTCAC CGTCCTGCAC
    2461 CAGGACTGGC TGAATGGCAA GGAGTACAAG TGCAAGGTCT
    CCAACAAAGC CCTCCCAGCC
    2521 CCCATCGAGA AAACCATCTC CAAAGCCAAA GGGCAGCCCC
    GAGAACCACA GGTGTACACC
    2581 CTGCCCCCAT CCCGCGATGA GCTGACCAAG AACCAGGTCA
    GCCTGACCTG CCTGGTCAAA
    2641 GGCTTCTATC CCAGCGACAT CGCCGTGGAG TGGGAGAGCA
    ATGGGCAGCC GGAGAACAAC
    2701 TACAAGACCA CGCCTCCCGT GTTGGACTCC GACGGCTCCT
    TCTTCCTCTA CAGCAAGCTC
    2761 ACCGTGGACA AGAGCAGGTG GCAGCAGGGG AACGTCTTCT
    CATGCTCCGT GATGCATGAG
    2821 GCTCTGCACA ACCACTACAC GCAGAAGAGC CTCTCCCTGT
    CTCCGGGTAA ATGA
  • FVII-119 amino acid sequence. Signal sequence is shown in dotted underline, propeptide is double underlined, the thrombin cleavage site with GGGS linker is shown in dashed underline, the linker region connecting FVII heavy chain to Fc region is underlined, and the linker region connecting the Fc regions is shown in bold
  • 1
    Figure US20210355473A1-20211118-C00034
    61 SFEEAREIFK DAERTKLFWI SYSDGDQCAS SPCQNGGSCK DQLQSYICFC LPAFEGRNCE
    121 THKDDQLICV NENGGCEQYC SDHTGTKRSC RCHEGYSLLA DGVSCTPTVE YPCGKIPILE
    181
    Figure US20210355473A1-20211118-C00035
    241 CFDKIKNWRN LIAVLGEHDL SEHDGDEQSR RVAQVIIPST YVPGTTNHDI ALLRLHQPVV
    301 LTDHVVPLCL PERTFSERTL AFVRFSLVSG WGQLLDRGAT ALELMVLNVP RLMTQDCLQQ
    361 SRKVGDSPNI TEYMFCAGYS DGSKDSCKGD SGGPHATHYR GTWYLTGIVS WGQGCATVGH
    421 FGVYTRVSQY IEWLQKLMRS EPRPGVLLRA PFPGGGGSGG GGSGGGGSGG GGSGGGGSGG
    481 GGSDKTHTCP PCPAPELLGG PSVFLFPPKP KDTLMISRTP EVTCVVVDVS HEDPEVKFNW
    541 YVDGVEVHNA KTKPREEQYN STYRVVSVLT VLHQDWLNGK EYKCKVSNKA LPAPIEKTIS
    601 KAKGQPREPQ VYTLPPSRDE LTKNQVSLTC LVKGFYPSDI AVEWESNGQP ENNYKTTPPV
    661 LDSDGSFFLY SKLTVDKSRW QQGNVFSCSV MHEALHNHYT QKSLSLSPGK GGGGSGGGGS
    721 GGGGSGGGGS DKTHTCPPCP APELLGGPSV FLFPPKPKDT LMISRTPEVT CVVVDVSHED
    781 PEVKFNWYVD GVEVHNAKTK PREEQYNSTY RVVSVLTVLH QDWLNGKEYK CKVSNKALPA
    841 PIEKTISKAK GQPREPQVYT LPPSRDELTK NQVSLTCLVK GFYPSDIAVE WESNGQPENN
    901 YKTTPPVLDS DGSFFLYSKL TVDKSRWQQG NVFSCSVMHE ALHNHYTQKS LSLSPGK*
  • DNA sequence for FVII-127
    1 ATGGTCTCCC AGGCCCTCAG GCTCCTCTGC CTTCTGCTTG
    GGCTTCAGGG CTGCCTGGCT
    61 GCAGTCTTCG TAACCCAGGA GGAAGCCCAC GGCGTCCTGC
    ACCGGCGCCG GCGCGCCAAC
    121 GCGTTCCTGG AGGAGCTGCG GCCGGGCTCC CTGGAGAGGG
    AGTGCAAGGA GGAGCAGTGC
    181 TCCTTCGAGG AGGCCCGGGA GATCTTCAAG GACGCGGAGA
    GGACGAAGCT GTTCTGGATT
    241 TCTTACAGTG ATGGGGACCA GTGTGCCTCA AGTCCATGCC
    AGAATGGGGG CTCCTGCAAG
    301 GACCAGCTCC AGTCCTATAT CTGCTTCTGC CTCCCTGCCT
    TCGAGGGCCG GAACTGTGAG
    361 ACGCACAAGG ATGACCAGCT GATCTGTGTG AACGAGAACG
    GCGGCTGTGA GCAGTACTGC
    421 AGTGACCACA CGGGCACCAA GCGCTCCTGT CGGTGCCACG
    AGGGGTACTC TCTGCTGGCA
    481 GACGGGGTGT CCTGCACACC CACAGTTGAA TATCCATGTG
    GAAAAATACC TATTCTAGAA
    541 AAAAGAAATG CCAGCAAACC CCAAGGCGCC CTGCGGCCCC
    GGATTGTGGG GGGCAAGGTG
    601 TGCCCCAAAG GGGAGTGTCC ATGGCAGGTC CTGTTGTTGG
    TGAATGGAGC TCAGTTGTGT
    661 GGGGGGACCC TGATCAACAC CATCTGGGTG GTCTCCGCGG
    CCCACTGTTT CGACAAAATC
    721 AAGAACTGGA GGAACCTGAT CGCGGTGCTG GGCGAGCACG
    ACCTCAGCGA GCACGACGGG
    781 GATGAGCAGA GCCGGCGGGT GGCGCAGGTC ATCATCCCCA
    GCACGTACGT CCCGGGCACC
    841 ACCAACCACG ACATCGCGCT GCTCCGCCTG CACCAGCCCG
    TGGTCCTCAC TGACCATGTG
    901 GTGCCCCTCT GCCTGCCCGA ACGGACGTTC TCTGAGAGGA
    CGCTGGCCTT CGTGCGCTTC
    961 TCATTGGTCA GCGGCTGGGG CCAGCTGCTG GACCGTGGCG
    CCACGGCCCT GGAGCTCATG
    1021 GTCCTCAACG TGCCCCGGCT GATGACCCAG GACTGCGAGG
    CCAGCTACCC CGGCAAGATC
    1081 ACGGAGTACA TGTTCTGTGC CGGCTACTCG GATGGCAGCA
    AGGACTCCTG CAAGGGGGAC
    1141 AGTGGAGGCC CACATGCCAC CCACTACCGG GGCACGTGGT
    ACCTGACGGG CATCGTCAGC
    1201 TGGGGCCAGG GCTGCGCAAC CGTGGGCCAC TTTGGGGTGT
    ACACCAGGGT CTCCCAGTAC
    1261 ATCGAGTGGC TGCAAAAGCT CATGCGCTCA GAGCCACGCC
    CAGGAGTCCT CCTGCGAGCC
    1321 CCATTTCCCG GTGGCGGTGG CTCCGGCGGA GGTGGGTCCG
    GTGGCGGCGG ATCAGGTGGG
    1381 GGTGGATCAG GCGGTGGAGG TTCCGGTGGC GGGGGATCAG
    ACAAAACTCA CACATGCCCA
    1441 CCGTGCCCAG CTCCGGAACT CCTGGGCGGA CCGTCAGTCT
    TCCTCTTCCC CCCAAAACCC
    1501 AAGGACACCC TCATGATCTC CCGGACCCCT GAGGTCACAT
    GCGTGGTGGT GGACGTGAGC
    1561 CACGAAGACC CTGAGGTCAA GTTCAACTGG TACGTGGACG
    GCGTGGAGGT GCATAATGCC
    1621 AAGACAAAGC CGCGGGAGGA GCAGTACAAC AGCACGTACC
    GTGTGGTCAG CGTCCTCACC
    1681 GTCCTGCACC AGGACTGGCT GAATGGCAAG GAGTACAAGT
    GCAAGGTCTC CAACAAAGCC
    1741 CTCCCAGCCC CCATCGAGAA AACCATCTCC AAAGCCAAAG
    GGCAGCCCCG AGAACCACAG
    1801 GTGTACACCC TGCCCCCATC CCGGGATGAG CTGACCAAGA
    ACCAGGTCAG CCTGACCTGC
    1861 CTGGTCAAAG GCTTCTATCC CAGCGACATC GCCGTGGAGT
    GGGAGAGCAA TGGGCAGCCG
    1921 GAGAACAACT ACAAGACCAC GCCTCCCGTG TTGGACTCCG
    ACGGCTCCTT CTTCCTCTAC
    1981 AGCAAGCTCA CCGTGGACAA GAGCAGGTGG CAGCAGGGGA
    ACGTCTTCTC ATGCTCCGTG
    2041 ATGCATGAGG CTCTGCACAA CCACTACACG CAGAAGAGCC
    TCTCCCTGTC TCCGGGTAAA
    2101 GGTGGCGGCG GATCAGGTGG GGGTGGATCA GGCGGTGGAG
    GTTCCGGTGG CGGGGGATCA
    2161 GACAAAACTC ACACATGCCC ACCGTGCCCA GCACCTGAAC
    TCCTGGGAGG ACCGTCAGTC
    2221 TTCCTCTTCC CCCCAAAACC CAAGGACACC CTCATGATCT
    CCCGGACCCC TGAGGTCACA
    2281 TGCGTGGTGG TGGACGTGAG CCACGAAGAC CCTGAGGTCA
    AGTTCAACTG GTACGTGGAC
    2341 GGCGTGGAGG TGCATAATGC CAAGACAAAG CCGCGGGAGG
    AGCAGTACAA CAGCACGTAC
    2401 CGTGTGGTCA GCGTCCTCAC CGTCCTGCAC CAGGACTGGC
    TGAATGGCAA GGAGTACAAG
    2461 TGCAAGGTCT CCAACAAAGC CCTCCCAGCC CCCATCGAGA
    AAACCATCTC CAAAGCCAAA
    2521 GGGCAGCCCC GAGAACCACA GGTGTACACC CTGCCCCCAT
    CCCGCGATGA GCTGACCAAG
    2581 AACCAGGTCA GCCTGACCTG CCTGGTCAAA GGCTTCTATC
    CCAGCGACAT CGCCGTGGAG
    2641 TGGGAGAGCA ATGGGCAGCC GGAGAACAAC TACAAGACCA
    CGCCTCCCGT GTTGGACTCC
    2701 GACGGCTCCT TCTTCCTCTA CAGCAAGCTC ACCGTGGACA
    AGAGCAGGTG GCAGCAGGGG
    2761 AACGTCTTCT CATGCTCCGT GATGCATGAG GCTCTGCACA
    ACCACTACAC GCAGAAGAGC
    2821 CTCTCCCTGT CTCCGGGTAA ATGA
  • FVII-127 amino acid sequence. Signal sequence is shown in dotted underline, propeptide is double underlined, the thrombin cleavage site is shown in dashed underline, the trypsin 170 loop region is wave underlined, the linker region connecting FVII heavy chain to Fc region is underlined, and the linker region connecting the Fc regions is shown in bold
  • 1
    Figure US20210355473A1-20211118-C00036
    61 SFEEAREIFK DAERTKLFWI SYSDGDQCAS SPCQNGGSCK DQLQSYICFC LPAFEGRNCE
    121 THKDDQLICV NENGGCEQYC SDHTGTKRSC RCHEGYSLLA DGVSCTPTVE YPCGKIPILE
    181
    Figure US20210355473A1-20211118-C00037
    241 KNWRNLIAVL GEHDLSEHDG DEQSRRVAQV IIPSTYVPGT TNHDIALLRL HQPVVLTDHV
    301
    Figure US20210355473A1-20211118-C00038
    361 TEYMFCAGYS DGSKDSCKGD SGGPHATHYR GTWYLTGIVS WGQGCATVGH FGVYTRVSQY
    421 IEWLQKLMRS EPRPGVLLRA PFPGGGGSGG GGSGGGGSGG GGSGGGGSGG GGSDKTHTCP
    481 PCPAPELLGG PSVFLFPPKP KDTLMISRTP EVTCVVVDVS HEDPEVKFNW YVDGVEVHNA
    541 KTKPREEQYN STYRVVSVLT VLHQDWLNGK EYKCKVSNKA LPAPIEKTIS KAKGQPREPQ
    601 VYTLPPSRDE LTKNQVSLTC LVKGFYPSDI AVEWESNGQP ENNYKTTPPV LDSDGSFFLY
    661 SKLTVDKSRW QQGNVFSCSV MHEALHNHYT QKSLSLSPGK GGGGSGGGGS GGGGSGGGGS
    721 DKTHTCPPCP APELLGGPSV FLFPPKPKDT LMISRTPEVT CVVVDVSHED PEVKFNWYVD
    781 GVEVHNAKTK PREEQYNSTY RVVSVLTVLH QDWLNGKEYK CKVSNKALPA PIEKTISKAK
    841 GQPREPQVYT LPPSRDELTK NQVSLTCLVK GFYPSDIAVE WESNGQPENN YKTTPPVLDS
    901 DGSFFLYSKL TVDKSRWQQG NVFSCSVMHE ALHNHYTQKS LSLSPGK*
  • DNA sequence for FVII-125
       1 ATGGTCTCCC AGGCCCTCAG GCTCCTCTGC CTTCTGCTTG GGCTTCAGGG CTGCCTGGCT
      61 GCAGTCTTCG TAACCCAGGA GGAAGCCCAC GGCGTCCTGC ACCGGCGCCG GCGCGCCAAC
     121 GCGTTCCTGG AGGAGCTGCG GCCGGGCTCC CTGGAGAGGG AGTGCAAGGA GGAGCAGTGC
     181 TCCTTCGAGG AGGCCCGGGA GATCTTCAAG GACGCGGAGA GGACGAAGCT GTTCTGGATT
     241 TCTTACAGTG ATGGGGACCA GTGTGCCTCA AGTCCATGCC AGAATGGGGG CTCCTGCAAG
     301 GACCAGCTCC AGTCCTATAT CTGCTTCTGC CTCCCTGCCT TCGAGGGCCG GAACTGTGAG
     361 ACGCACAAGG ATGACCAGCT GATCTGTGTG AACGAGAACG GCGGCTGTGA GCAGTACTGC
     421 AGTGACCACA CGGGCACCAA GCGCTCCTGT CGGTGCCACG AGGGGTACTC TCTGCTGGCA
     481 GACGGGGTGT CCTGCACACC CACAGTTGAA TATCCATGTG GAAAAATACC TATTCTAGAA
     541 AAAAGAAATG CCAGCAAACC CCAAGGCCGA ATTGTGGGGG GCAAGGTGTG CCCCAAAGGG
     601 GAGTGTCCAT GGCAGGTCCT GTTGTTGGTG AATGGAGCTC AGTTGTGTGG GGGGACCCTG
     661 ATCAACACCA TCTGGGTGGT CTCCGCGGCC CACTGTTTCG ACAAAATCAA GAACTGGAGG
     721 AACCTGATCG CGGTGCTGGG CGAGCACGAC CTCAGCGAGC ACGACGGGGA TGAGCAGAGC
     781 CGGCGGGTGG CGCAGGTCAT CATCCCCAGC ACGTACGTCC CGGGCACCAC CAACCACGAC
     841 ATCGCGCTGC TCCGCCTGCA CCAGCCCGTG GTCCTCACTG ACCATGTGGT GCCCCTCTGC
     901 CTGCCCGAAC GGACGTTCTC TGAGAGGACG CTGGCCTTCG TGCGCTTCTC ATTGGTCAGC
     961 GGCTGGGGCC AGCTGCTGGA CCGTGGCGCC ACGGCCCTGG AGCTCATGGT CCTCAACGTG
    1021 CCCCGGCTGA TGACCCAGGA CTGCCTGCAG CAGTCACGGA AGGTGGGAGA CTCCCCAAAT
    1081 ATCACGGAGT ACATGTTCTG TGCCGGCTAC TCGGATGGCA GCAAGGACTC CTGCAAGGGG
    1141 GACAGTGGAG GCCCACATGC CACCCACTAC CGGGGCACGT GGTACCTGAC GGGCATCGTC
    1201 AGCTGGGGCC AGGGCTGCGC AACCGTGGGC CACTTTGGGG TGTACACCAG GGTCTCCCAG
    1261 TACATCGAGT GGCTGCAAAA GCTCATGCGC TCAGAGCCAC GCCCAGGAGT CCTCCTGCGA
    1321 GCCCCATTTC CCGGTGGCGG TGGCTCCGGC GGAGGTGGGT CCGGTGGCGG CGGATCAGGT
    1381 GGGGGTGGAT CAGGCGGTGG AGGTTCCGGT GGCGGGGGAT CCGACATCGT GATGACCCAG
    1441 GCCGCCCCCA GCGTGCCCGT GACCCCCGGC GAGAGCGTGA GCATCAGCTG CCGGAGCAGC
    1501 CGGAGCCTGC TGCACAGCAA CGGCAACACC TACCTGTGCT GGTTCCTGCA GCGGCCCGGC
    1561 CAGAGCCCCC AGCTGCTGAT CTACCGGATG AGCAACCTGG CCAGCGGCGT GCCCGACCGG
    1621 TTCAGCGGCA GCGGCAGCGG CACCGCCTTC ACCCTGCGGA TCAGCCGGGT GGAGGCCGAG
    1681 GACGTGGGCG TGTACTACTG CATGCAGCAC CTGGAGTACC CCTTCACCTT CGGCAGCGGC
    1741 ACCAAGCTGG AGATCAAGCG GGGCGGCGGC GGCAGCGGCG GCGGCGGCAG CGGCGGCGGC
    1801 GGCAGCCAGG TGCAGCTGCA GCAGAGCGGC GCCGAGCTGG TGCGGCCCGG CACCAGCGTG
    1861 AAGATCAGCT GCAAGGCCAG CGGCTACACC TTCACCAACT ACTGGCTGGG CTGGGTGAAG
    1921 CAGCGGCCCG GCCACGGCCT GGAGTGGATC GGCGACATCT ACCCCGGCGG CGGCTACAAC
    1981 AAGTACAACG AGAACTTCAA GGGCAAGGCC ACCCTGACCG CCGACACCAG CAGCAGCACC
    2041 GCCTACATGC AGCTGAGCAG CCTGACCAGC GAGGACAGCG CCGTGTACTT CTGCGCCCGG
    2101 GAGTACGGCA ACTACGACTA CGCCATGGAC AGCTGGGGCC AGGGCACCAG CGTGACCGTG
    2161 AGCAGCTGA
  • FVII-125 amino acid sequence. Signal sequence is shown in dotted underline, propeptide is double underlined, and linker region connecting FVII to AP3 is bold, and AP3 scFv is italicized
  • 1
    Figure US20210355473A1-20211118-C00039
    61 SFEEAREIFK DAERTKLFWI SYSDGDQCAS SPCQNGGSCK DQLQSYICFC LPAFEGRNCE
    121 THKDDQLICV NENGGCEQYC SDHTGTKRSC RCHEGYSLLA DGVSCTGTVE YPCGKIPILE
    181 KRNASKPQGR IVGGKVCPKG ECPWQVLLLV NGAQLCGGTL INTIWVVSAA HCFDKIKNWR
    241 NLIAVLGEHD LSEHDGDEQS RRVAQVIIPS TYVPGTTNHD IALLRLHQPV VLTDHVVPLC
    301 LPERTFSERT LAFVRFSLVS GWGQLLDRGA TALELMVLNV PRLMTQDCLQ QSRKVGDSPN
    361 ITEYMFCAGY SDGSKDSCKG DSGGPHATHY RGTWYLTGIV SWGQGCATVG HFGVYTRVSQ
    421 YIEWLQKLMR SEPRPGVLLR APFPGGGGSG GGGSGGGGSG GGGSGGGGSG GGGS DIVMTQ
    461 AAPSVPVTPG ESVSISCRSS RSLLHSNGNT YLCWFLQRPG QSPQLLIYRM SNLASGVPDR
    541 FSGSGSGTAF TLRISRVEAE DVGVYYCMQH LEYPFTFGSG TKLEIKR GGG  GSGGGGSGGG
    601 GSQVQLQQSG AELVRPGTSV KISCKASGYT FTNYWLGWVK QRPGHGLEWI GDIYPGGGYN
    661 KYNENFKGKA TLTADTSSST AYMQLSSLTS EDSAVYFCAR EYGNYDYAMD SWGQGTSVTV
    721 SS*
  • DNA sequence for FVII-067
    1 ATGGTCTCCC AGGCCCTCAG GCTCCTCTGC CTTCTGCTTG
    GGCTTCAGGG CTGCCTGGCT
    61 GCAGTCTTCG TAACCCAGGA GGAAGCCCAC GGCGTCCTGC
    ACCGGCGCCG GCGCGCCAAC
    121 GCGTTCCTGG AGGAGCTGCG GCCGGGCTCC CTGGAGAGGG
    AGTGCAAGGA GGAGCAGTGC
    181 TCCTTCGAGG AGGCCCGGGA GATCTTCAAG GACGCGGAGA
    GGACGAAGCT GTTCTGGATT
    241 TCTTACAGTG ATGGGGACCA GTGTGCCTCA AGTCCATGCC
    AGAATGGGGG CTCCTGCAAG
    301 GACCAGCTCC AGTCCTATAT CTGCTTCTGC CTCCCTGCCT
    TCGAGGGCCG GAACTGTGAG
    361 ACGCACAAGG ATGACCAGCT GATCTGTGTG AACGAGAACG
    GCGGCTGTGA GCAGTACTGC
    421 AGTGACCACA CGGGCACCAA GCGCTCCTGT CGGTGCCACG
    AGGGGTACTC TCTGCTGGCA
    481 GACGGGGTGT CCTGCACACC CACAGTTGAA TATCCATGTG
    GAAAAATACC TATTCTAGAA
    541 AAAAGAAATG CCAGCAAACC CCAAGGCCGA ATTGTGGGGG
    GCAAGGTGTG CCCCAAAGGG
    601 GAGTGTCCAT GGCAGGTCCT GTTGTTGGTG AATGGAGCTC
    AGTTGTGTGG GGGGACCCTG
    661 ATCAACACCA TCTGGGTGGT CTCCGCGGCC CACTGTTTCG
    ACAAAATCAA GAACTGGAGG
    721 AACCTGATCG CGGTGCTGGG CGAGCACGAC CTCAGCGAGC
    ACGACGGGGA TGAGCAGAGC
    781 CGGCGGGTGG CGCAGGTCAT CATCCCCAGC ACGTACGTCC
    CGGGCACCAC CAACCACGAC
    841 ATCGCGCTGC TCCGCCTGCA CCAGCCCGTG GTCCTCACTG
    ACCATGTGGT GCCCCTCTGC
    901 CTGCCCGAAC GGACGTTCTC TGAGAGGACG CTGGCCTTCG
    TGCGCTTCTC ATTGGTCAGC
    961 GGCTGGGGCC AGCTGCTGGA CCGTGGCGCC ACGGCCCTGG
    AGCTCATGGT CCTCAACGTG
    1021 CCCCGGCTGA TGACCCAGGA CTGCCTGCAG CAGTCACGGA
    AGGTGGGAGA CTCCCCAAAT
    1081 ATCACGGAGT ACATGTTCTG TGCCGGCTAC TCGGATGGCA
    GCAAGGACTC CTGCAAGGGG
    1141 GACAGTGGAG GCCCACATGC CACCCACTAC CGGGGCACGT
    GGTACCTGAC GGGCATCGTC
    1201 AGCTGGGGCC AGGGCTGCGC AACCGTGGGC CACTTTGGGG
    TGTACACCAG GGTCTCCCAG
    1261 TACATCGAGT GGCTGCAAAA GCTCATGCGC TCAGAGCCAC
    GCCCAGGAGT CCTCCTGCGA
    1321 GCCCCATTTC CCGGTGGCGG TGGCTCCGGC GGAGGTGGGT
    CCGGTGGCGG CGGATCAGGT
    1381 GGGGGTGGAT CAGGCGGTGG AGGTTCCGGT GGCGGGGGAT
    CCGACAAAAC TCACACATGC
    1441 CCACCGTGCC CAGCTCCGGA ACTCCTGGGC GGACCGTCAG
    TCTTCCTCTT CCCCCCAAAA
    1501 CCCAAGGACA CCCTCATGAT CTCCCGGACC CCTGAGGTCA
    CATGCGTGGT GGTGGACGTG
    1561 AGCCACGAAG ACCCTGAGGT CAAGTTCAAC TGGTACGTGG
    ACGGCGTGGA GGTGCATAAT
    1621 GCCAAGACAA AGCCGCGGGA GGAGCAGTAC AACAGCACGT
    ACCGTGTGGT CAGCGTCCTC
    1681 ACCGTCCTGC ACCAGGACTG GCTGAATGGC AAGGAGTACA
    AGTGCAAGGT CTCCAACAAA
    1741 GCCCTCCCAG CCCCCATCGA GAAAACCATC TCCAAAGCCA
    AAGGGCAGCC CCGAGAACCA
    1801 CAGGTGTACA CCCTGCCCCC ATCCCGGGAT GAGCTGACCA
    AGAACCAGGT CAGCCTGACC
    1861 TGCCTGGTCA AAGGCTTCTA TCCCAGCGAC ATCGCCGTGG
    AGTGGGAGAG CAATGGGCAG
    1921 CCGGAGAACA ACTACAAGAC CACGCCTCCC GTGTTGGACT
    CCGACGGCTC CTTCTTCCTC
    1981 TACAGCAAGC TCACCGTGGA CAAGAGCAGG TGGCAGCAGG
    GGAACGTCTT CTCATGCTCC
    2041 GTGATGCATG AGGCTCTGCA CAACCACTAC ACGCAGAAGA
    GCCTCTCCCT GTCTCCGGGT
    2101 AAAGGTGGCG GCGGATCAGG TGGGGGTGGA TCAGGCGGTG
    GAGGTTCCGG TGGCGGGGGA
    2161 TCAGACAAAA CTCACACATG CCCACCGTGC CCAGCACCTG
    AACTCCTGGG AGGACCGTCA
    2221 GTCTTCCTCT TCCCCCCAAA ACCCAAGGAC ACCCTCATGA
    TCTCCCGGAC CCCTGAGGTC
    2281 ACATGCGTGG TGGTGGACGT GAGCCACGAA GACCCTGAGG
    TCAAGTTCAA CTGGTACGTG
    2341 GACGGCGTGG AGGTGCATAA TGCCAAGACA AAGCCGCGGG
    AGGAGCAGTA CAACAGCACG
    2401 TACCGTGTGG TCAGCGTCCT CACCGTCCTG CACCAGGACT
    GGCTGAATGG CAAGGAGTAC
    2461 AAGTGCAAGG TCTCCAACAA AGCCCTCCCA GCCCCCATCG
    AGAAAACCAT CTCCAAAGCC
    2521 AAAGGGCAGC CCCGAGAACC ACAGGTGTAC ACCCTGCCCC
    CATCCCGCGA TGAGCTGACC
    2581 AAGAACCAGG TCAGCCTGAC CTGCCTGGTC AAAGGCTTCT
    ATCCCAGCGA CATCGCCGTG
    2641 GAGTGGGAGA GCAATGGGCA GCCGGAGAAC AACTACAAGA
    CCACGCCTCC CGTGTTGGAC
    2701 TCCGACGGCT CCTTCTTCCT CTACAGCAAG CTCACCGTCG
    ACAAGAGCAG GTGGCAGCAG
    2761 GGGAACGTCT TCTCATGCTC CGTGATGCAT GAGGCTCTGC
    ACAACCACTA CACGCAGAAG
    2821 AGCCTCTCCC TGTCTCCGGG TAAAGGTGGC GGTGGCTCCG
    GCGGAGGTGG GTCCGGTGGC
    2881 GGCGGATCAG GTGGGGGTGG ATCAGGCGGT GGAGGTTCCG
    GTGGCGGGGG ATCAGCGCAG
    2941 GTGCAGCTGC AGGAGTCTGG GGGAGGCTTG GTACAGCCTG
    GGGGGTCCCT GAGACTCTCC
    3001 TGTGCAGCCT CTGGATTCAT GTTTAGCAGG TATGCCATGA
    GCTGGGTCCG CCAGGCTCCA
    3061 GGGAAGGGGC CAGAGTGGGT CTCAGGTATT AGTGGTAGTG
    GTGGTAGTAC ATACTACGCA
    3121 GACTCCGTGA AGGGCCGGTT CACCGTCTCC AGAGACAATT
    CCAAGAACAC GCTGTATCTG
    3181 CAAATGAACA GCCTGAGAGC CGAGGACACG GCTGTATATT
    ACTGCGCCCG GGGCGCCACC
    3241 TACACCAGCC GGAGCGACGT GCCCGACCAG ACCAGCTTCG
    ACTACTGGGG CCAGGGAACC
    3301 CTGGTCACCG TCTCCTCAGG GAGTGCATCC GCCCCAAAGC
    TTGAAGAAGG TGAATTTTCA
    3361 GAAGCACGCG TATCTGAACT GACTCAGGAC CCTGCTGTGT
    CTGTGGCCTT GGGACAGACA
    3421 GTCAGGATCA CATGCCAAGG AGACAGCCTC AGAAACTTTT
    ATGCAAGCTG GTACCAGCAG
    3481 AAGCCAGGAC AGGCCCCTAC TCTTGTCATC TATGGTTTAA
    GTAAAAGGCC CTCAGGGATC
    3541 CCAGACCGAT TCTCTGCCTC CAGCTCAGGA AACACAGCTT
    CCTTGACCAT CACTGGGGCT
    3601 CAGGCGGAAG ATGAGGCTGA CTATTACTGC CTGCTGTACT
    ACGGCGGCGG CCAGCAGGGC
    3661 GTGTTCGGCG GCGGCACCAA GCTGACCGTC CTACGTCAGC
    CCAAGGCTGC CCCCTCGGTC
    3721 ACTCTGTTCC CGCCCTCTTC TGCGGCCTGA
  • FVII-067 amino acid sequence. Signal sequence is shown in dotted underline, propeptide is double underlined, linker region connecting FVIIa to Fc region is underlined, linker connecting both Fc regions is dashed underlined and linker connecting the Fc region to SCE5 is in bold
  • Figure US20210355473A1-20211118-C00040
      61 SFEEAREIFK DAERTKLFWI SYSDGDQCAS SPCQNGGSCK DQLQSYICFC LPAFEGRNCE
     121 THKDDQLICV NENGGCEQYC SDHTGTKRSC RCHEGYSLLA DGVSCTPTVE YPCGKIPILE
     151 KRNASKPQGR IVGGKVCPKG ECPWQVLLLV NGAQLCGGTL INTIWVVSAA HCFDKIKNWR
     241 NLIAVLGEHD LSEHDGDEQS RRVAQVIIPS TYVPGTTNHD IALLRLHQPV VLTDHVVPLC
     301 LPERTFSERT LAFVRFSLVS GWGQLLDRGA TALELMVLNV PRLMTQDCLQ QSRKVGDSPN
     361 ITEYMFCAGY SDGSKDSCKG DSGGPHATHY RGTWYLTGIV SWGQGCATVG HFGVYTRVSQ
     421 YIEWLQKLMR SEPRPGVLLR APFPGGGGSG GGGSGGGGSG GGGSGGGGSG GGGSDKTHTC
     481 PPCPAPELLG GPSVFLFPPK PKDTLMISRT PEVTCVVVDV SHEDPEVKFN WYVDGVEVHN
     541 AKTKPREEQY NSTYRVVSVL TVLHQDWLNG KEYKCKVSNK ALPAPIEKTI SKAKGQPREP
     601 QVYTLPPSRD ELTKNQVSLT CLVKGFYPSD IAVEWESNGQ PENNYKTTPP VLDSDGSFFL
    Figure US20210355473A1-20211118-C00041
     781 DGVEVHNAKT KPREEQYNST YRVVSVLTVL HQDWLNGKEY KCKVSNKALP APIEKTISKA
     841 KGQPREPQVY TLPPSRDELT KNQVSLTCLV KGFYPSDIAV EWESNGQPEN NYKTTPPVLD
     901 SDGSFFLYSK LTVDKSRWQQ GNVFSCSVMH EALHNHYTQK SLSLSPGKGG GGSGGGGSGG
     961 GGSGGGGSGG GGSGGGGSAQ VQLQESGGGL VQPGGSLRLS CAASGFMFSR YAMSWVRQAP
    1021 GKGPEWVSGI SGSGGSTYYA DSVKGRFTVS RDNSKNTLYL QMNSLRAEDT AVYYCARGAT
    1081 YTSRSDVPDQ TSFDYWGQGT LVTVSSGSAS APKLEEGEFS EARVSELTQD PAVSVALGQT
    1141 VRITCQGDSL RNFYASWYQQ KPGQAPTLVI YGLSKRPSGI PDRFSASSSG NTASLTITGA
    1201 QAEDEADYYC LLYYGGGQQG VFGGGTKLTV LRQPKAAPSV TLFPPSSAA*
  • DNA sequence for FVII-094
    1 ATGGTCTCCC AGGCCCTCAG GCTCCTCTGC CTTCTGCTTG
    GGCTTCAGGG CTGCCTGGCT
    61 GCAGTCTTCG TAACCCAGGA GGAAGCCCAC GGCGTCCTGC
    ACCGGCGCCG GCGCGCCAAC
    121 GCGTTCCTGG AGGAGCTGCG GCCGGGCTCC CTGGAGAGGG
    AGTGCAAGGA GGAGCAGTGC
    181 TCCTTCGAGG AGGCCCGGGA GATCTTCAAG GACGCGGAGA
    GGACGAAGCT GTTCTGGATT
    241 TCTTACAGTG ATGGGGACCA GTGTGCCTCA AGTCCATGCC
    AGAATGGGGG CTCCTGCAAG
    301 GACCAGCTCC AGTCCTATAT CTGCTTCTGC CTCCCTGCCT
    TCGAGGGCCG GAACTGTGAG
    361 ACGCACAAGG ATGACCAGCT GATCTGTGTG AACGAGAACG
    GCGGCTGTGA GCAGTACTGC
    421 AGTGACCACA CGGGCACCAA GCGCTCCTGT CGGTGCCACG
    AGGGGTACTC TCTGCTGGCA
    481 GACGGGGTGT CCTGCACACC CACAGTTGAA TATCCATGTG
    GAAAAATACC TATTCTAGAA
    541 AAAAGAAATG CCAGCAAACC CCAAGGCCGA ATTGTGGGGG
    GCAAGGTGTG CCCCAAAGGG
    601 GAGTGTCCAT GGCAGGTCCT GTTGTTGGTG AATGGAGCTC
    AGTTGTGTGG GGGGACCCTG
    661 ATCAACACCA TCTGGGTGGT CTCCGCGGCC CACTGTTTCG
    ACAAAATCAA GAACTGGAGG
    721 AACCTGATCG CGGTGCTGGG CGAGCACGAC CTCAGCGAGC
    ACGACGGGGA TGAGCAGAGC
    781 CGGCGGGTGG CGCAGGTCAT CATCCCCAGC ACGTACGTCC
    CGGGCACCAC CAACCACGAC
    841 ATCGCGCTGC TCCGCCTGCA CCAGCCCGTG GTCCTCACTG
    ACCATGTGGT GCCCCTCTGC
    901 CTGCCCGAAC GGACGTTCTC TGAGAGGACG CTGGCCTTCG
    TGCGCTTCTC ATTGGTCAGC
    961 GGCTGGGGCC AGCTGCTGGA CCGTGGCGCC ACGGCCCTGG
    AGCTCATGGT CCTCAACGTG
    1021 CCCCGGCTGA TGACCCAGGA CTGCCTGCAG CAGTCACGGA
    AGGTGGGAGA CTCCCCAAAT
    1081 ATCACGGAGT ACATGTTCTG TGCCGGCTAC TCGGATGGCA
    GCAAGGACTC CTGCAAGGGG
    1141 GACAGTGGAG GCCCACATGC CACCCACTAC CGGGGCACGT
    GGTACCTGAC GGGCATCGTC
    1201 AGCTGGGGCC AGGGCTGCGC AACCGTGGGC CACTTTGGGG
    TGTACACCAG GGTCTCCCAG
    1261 TACATCGAGT GGCTGCAAAA GCTCATGCGC TCAGAGCCAC
    GCCCAGGAGT CCTCCTGCGA
    1321 GCCCCATTTC CCGATATCGG TGGCGGTGGC TCCGGCGGAG
    GTGGGTCCGG TGGCGGCGGA
    1381 TCAGGTGGGG GTGGATCAGG CGGTGGAGGT TCCGGTGGCG
    GGGGATCAGC GCAGGTGCAG
    1441 CTGCAGGAGT CTGGGGGAGG CTTGGTACAG CCTGGGGGGT
    CCCTGAGACT CTCCTGTGCA
    1501 GCCTCTGGAT TCATGTTTAG CAGGTATGCC ATGAGCTGGG
    TCCGCCAGGC TCCAGGGAAG
    1561 GGGCCAGAGT GGGTCTCAGG TATTAGTGGT AGTGGTGGTA
    GTACATACTA CGCAGACTCC
    1621 GTGAAGGGCC GGTTCACCGT CTCCAGAGAC AATTCCAAGA
    ACACGCTGTA TCTGCAAATG
    1681 AACAGCCTGA GAGCCGAGGA CACGGCTGTA TATTACTGCG
    CCCGGGGCGC CACCTACACC
    1741 AGCCGGAGCG ACGTGCCCGA CCAGACCAGC TTCGACTACT
    GGGGCCAGGG AACCCTGGTC
    1801 ACCGTCTCCT CAGGGAGTGC ATCCGCCCCA AAGCTTGAAG
    AAGGTGAATT TTCAGAAGCA
    1861 CGCGTATCTG AACTGACTCA GGACCCTGCT GTGTCTGTGG
    CCTTGGGACA GACAGTCAGG
    1921 ATCACATGCC AAGGAGACAG CCTCAGAAAC TTTTATGCAA
    GCTGGTACCA GCAGAAGCCA
    1981 GGACAGGCCC CTACTCTTGT CATCTATGGT TTAAGTAAAA
    GGCCCTCAGG GATCCCAGAC
    2041 CGATTCTCTG CCTCCAGCTC AGGAAACACA GCTTCCTTGA
    CCATCACTGG GGCTCAGGCG
    2101 GAAGATGAGG CTGACTATTA CTGCCTGCTG TACTACGGCG
    GCGGCCAGCA GGGCGTGTTC
    2161 GGCGGCGGCA CCAAGCTGAC CGTCCTACGT CAGCCCAAGG
    CTGCCCCCTC GGTCACTCTG
    2221 TTCCCGCCCT CTTCTGCGGC CTGA
  • FVII-094 amino acid sequence. Signal sequence is shown in dotted underline, propeptide is double underlined, and linker region connecting FVII to SCE5 is underlined
  • 1
    Figure US20210355473A1-20211118-C00042
    61 SFEEAREIFK DAERTKLFWI SYSDGDQCAS SPCQNGGSCK DQLQSYICFC LPAFEGRNCE
    121 THKDDQLICV NENGGCEQYC SDHTGTKRSC RCHEGYSLLA DGVSCTPTVE YPCGKIPILE
    181 KRNASKPQGR IVGGKVCPKG ECPWQVLLLV NGAQLCGGTL INTIWVVSAA HCFDKIKNWR
    241 NLIAVLGEHD LSEHDGDEQS RRVAQVIIPS TYVPGTTNHD IALLRLHQPV VLTDHVVPLC
    301 LPERTFSERT LAFVRFSLVS GWGQLLDRGA TALELMVLNV PRLMTQDCLQ QSRKVGDSPN
    351 ITEYMFCAGY SDGSKDSCKG DSGGPHATHY RGTWYLTGIV SWGQGCATVG HFGVYTRVSQ
    421 YIEWLQKLMR SEPRPGVLLR APFPDIGGGG SGGGGSGGGG SGGGGSGGGG SGGGGSAQVQ
    461 LQESGGGLVQ PGGSLRLSCA ASGFMFSRYA MSWVRQAPGK GPEWVSGISG SGGSTYYADS
    541 VKGRFTVSRD NSKNTLYLQM NSLRAEDTAV YYCARGATYT SRSDVPDQTS FDYWGQGTLV
    601 TVSSGSASAP KLEEGEFSEA RVSELTQDPA VSVALGQTVR ITCQGDSLRN FYASWYQQKP
    661 GQAPTLVIYG LSKRPSGIPD RFSASSSGNT ASLTITGAQA EDEADYYCLL YYGGGQQGVF
    721 GGGTKLTVLR QPKAAPSVTL FPPSSAA*
  • DNA sequence for FVII-028
    1 ATGGTCTCCC AGGCCCTCAG GCTCCTCTGC CTTCTGCTTG
    GGCTTCAGGG CTGCCTGGCT
    61 GCGGAAGTGC AGCTGGTGCA GTCTGGAGCT GAGGTGAATA
    AGCCTGGGGC CTCAGTGAAG
    121 GTCTCCTGCA AGGCTTCTGG ATACACCTTC ACCGGCTACT
    ATATGCACTG GGTGCGACAG
    181 GCCCCTGGAC AAGGGCTTGA GTGGATGGGA TGGATCAACC
    CTAACAGTGG TGGCACAAAC
    241 TATGCACAGA AGTTTCAGGG CTGGGTCACC ATGACCAGGG
    ACACGTCCAT CAGCACCGCC
    301 TACATGGAGC TGAGCAGGCT GAGATCTGAC GACACGGCCG
    TGTATTACTG TGCGAGAGGC
    361 CGTGCTTTGT ATAACCGGAA CGACCGGTCC CCCAACTGGT
    TCGACCCCTG GGGCCAGGGA
    421 ACCCTGGTCA CCGTCTCCTC AGGGAGTGCA TCCGCCCCAA
    CCCTTAAACT TGAAGAAGGT
    481 GAATTTTCAG AAGCACGCGT ACAGGCTGTG CTGACTCAGC
    CGCCCTCGGT GTCAGTGGCC
    541 CCAGGACAGA CGGCCAGGAT TACCTGTGGG GGAAACAACA
    TTGGAAGTAA AAGTGTGCAG
    601 TGGTACCAGC AGAAGCCAGG CCAGGCCCCT GTGCTGGTCG
    TCTATGATGA TAGCGACCGG
    661 CCCTCAGGGA TCCCTGAGCG ATTCTCTGGC TCCAACTCTG
    GGAACATGGC CACCCTGACC
    721 ATCAGCAGGG TCGAAGCCGG GGATGAGGCC GACTATTACT
    GTCAGGTGTG GGATAGTAGT
    781 AGTGATCATG TGGTATTCGG CGGAGGGACC AAGCTGACCG
    TCCTAGGTCA GCCCAAGGCT
    841 GCCCCCTCGG TCACTCTGTT CCCGCCGTCC GCGGCCGCTA
    GGACGAAGCT GTTCTGGATT
    901 TCTTACAGTG ATGGGGACCA GTGTGCCTCA AGTCCATGCC
    AGAATGGGGG CTCCTGCAAG
    961 GACCAGCTCC AGTCCTATAT CTGCTTCTGC CTCCCTGCCT
    TCGAGGGCCG GAACTGTGAG
    1021 ACGCACAAGG ATGACCAGCT GATCTGTGTG AACGAGAACG
    GCGGCTGTGA GCAGTACTGC
    1081 AGTGACCACA CGGGCACCAA GCGCTCCTGT CGGTGCCACG
    AGGGGTACTC TCTGCTGGCA
    1141 GACGGGGTGT CCTGCACACC CACAGTTGAA TATCCATGTG
    GAAAAATACC TATTCTAGAA
    1201 AAAAGAAATG CCAGCAAACC CCAAGGCCGA ATTGTGGGGG
    GCAAGGTGTG CCCCAAAGGG
    1261 GAGTGTCCAT GGCAGGTCCT GTTGTTGGTG AATGGAGCTC
    AGTTGTGTGG GGGGACCCTG
    1321 ATCAACACCA TCTGGGTGGT CTCCGCGGCC CACTGTTTCG
    ACAAAATCAA GAACTGGAGG
    1381 AACCTGATCG CGGTGCTGGG CGAGCACGAC CTCAGCGAGC
    ACGACGGGGA TGAGCAGAGC
    1441 CGGCGGGTGG CGCAGGTCAT CATCCCCAGC ACGTACGTCC
    CGGGCACCAC CAACCACGAC
    1501 ATCGCGCTGC TCCGCCTGCA CCAGCCCGTG GTCCTCACTG
    ACCATGTGGT GCCCCTCTGC
    1561 CTGCCCGAAC GGACGTTCTC TGAGAGGACG CTGGCCTTCG
    TGCGCTTCTC ATTGGTCAGC
    1621 GGCTGGGGCC AGCTGCTGGA CCGTGGCGCC ACGGCCCTGG
    AGCTCATGGT CCTCAACGTG
    1681 CCCCGGCTGA TGACCCAGGA CTGCCTGCAG CAGTCACGGA
    AGGTGGGAGA CTCCCCAAAT
    1741 ATCACGGAGT ACATGTTCTG TGCCGGCTAC TCGGATGGCA
    GCAAGGACTC CTGCAAGGGG
    1801 GACAGTGGAG GCCCACATGC CACCCACTAC CGGGGCACGT
    GGTACCTGAC GGGCATCGTC
    1861 AGCTGGGGCC AGGGCTGCGC AACCGTGGGC CACTTTGGGG
    TGTACACCAG GGTCTCCCAG
    1921 TACATCGAGT GGCTGCAAAA GCTCATGCGC TCAGAGCCAC
    GCCCAGGAGT CCTCCTGCGA
    1981 GCCCCATTTC CCGGTGGCGG TGGCTCCGGC GGAGGTGGGT
    CCGGTGGCGG CGGATCAGGT
    2041 GGGGGTGGAT CAGGCGGTGG AGGTTCCGGT GGCGGGGGAT
    CCGACAAAAC TCACACATGC
    2101 CCACCGTGCC CAGCTCCGGA ACTCCTGGGC GGACCGTCAG
    TCTTCCTCTT CCCCCCAAAA
    2161 CCCAAGGACA CCCTCATGAT CTCCCGGACC CCTGAGGTCA
    CATGCGTGGT GGTGGACGTG
    2221 AGCCACGAAG ACCCTGAGGT CAAGTTCAAC TGGTACGTGG
    ACGGCGTGGA GGTGCATAAT
    2281 GCCAAGACAA AGCCGCGGGA GGAGCAGTAC AACAGCACGT
    ACCGTGTGGT CAGCGTCCTC
    2341 ACCGTCCTGC ACCAGGACTG GCTGAATGGC AAGGAGTACA
    AGTGCAAGGT CTCCAACAAA
    2401 GCCCTCCCAG CCCCCATCGA GAAAACCATC TCCAAAGCCA
    AAGGGCAGCC CCGAGAACCA
    2461 CAGGTGTACA CCCTGCCCCC ATCCCGGGAT GAGCTGACCA
    AGAACCAGGT CAGCCTGACC
    2521 TGCCTGGTCA AAGGCTTCTA TCCCAGCGAC ATCGCCGTGG
    AGTGGGAGAG CAATGGGCAG
    2581 CCGGAGAACA ACTACAAGAC CACGCCTCCC GTGTTGGACT
    CCGACGGCTC CTTCTTCCTC
    2641 TACAGCAAGC TCACCGTGGA CAAGAGCAGG TGGCAGCAGG
    GGAACGTCTT CTCATGCTCC
    2701 GTGATGCATG AGGCTCTGCA CAACCACTAC ACGCAGAAGA
    GCCTCTCCCT GTCTCCGGGT
    2761 AAAGGTGGCG GCGGATCAGG TGGGGGTGGA TCAGGCGGTG
    GAGGTTCCGG TGGCGGGGGA
    2821 TCCGACAAAA CTCACACATG CCCACCGTGC CCAGCACCTG
    AACTCCTGGG AGGACCGTCA
    2881 GTCTTCCTCT TCCCCCCAAA ACCCAAGGAC ACCCTCATGA
    TCTCCCGGAC CCCTGAGGTC
    2941 ACATGCGTGG TGGTGGACGT GAGCCACGAA GACCCTGAGG
    TCAAGTTCAA CTGGTACGTG
    3001 GACGGCGTGG AGGTGCATAA TGCCAAGACA AAGCCGCGGG
    AGGAGCAGTA CAACAGCACG
    3061 TACCGTGTGG TCAGCGTCCT CACCGTCCTG CACCAGGACT
    GGCTGAATGG CAAGGAGTAC
    3121 AAGTGCAAGG TCTCCAACAA AGCCCTCCCA GCCCCCATCG
    AGAAAACCAT CTCCAAAGCC
    3181 AAAGGGCAGC CCCGAGAACC ACAGGTGTAC ACCCTGCCCC
    CATCCCGCGA TGAGCTGACC
    3241 AAGAACCAGG TCAGCCTGAC CTGCCTGGTC AAAGGCTTCT
    ATCCCAGCGA CATCGCCGTG
    3301 GAGTGGGAGA GCAATGGGCA GCCGGAGAAC AACTACAAGA
    CCACGCCTCC CGTGTTGGAC
    3361 TCCGACGGCT CCTTCTTCCT CTACAGCAAG CTCACCGTGG
    ACAAGAGCAG GTGGCAGCAG
    3421 GGGAACGTCT TCTCATGCTC CGTGATGCAT GAGGCTCTGC
    ACAACCACTA CACGCAGAAG
    3481 AGCCTCTCCC TGTCTCCGGG TAAATGA
  • FVII-028 amino acid sequence. Signal sequence is shown in dotted underline, linker region connecting FVII to Fc region is underlined, linker connecting both Fcs sites is shown in bold, and MB9 is italicized
  • 1
    Figure US20210355473A1-20211118-C00043
    61 APGQGLEWMG WINPNSGGTN YAQKFQGWVT MTRDTSISTA YMELSRLRSD DTAVYYCARG
    121 RALYNRNDRS PNWFDPWGQG TLVTVSSGSA SAPTLKLEEG EFSEARVQAV LTQPPSVSVA
    181 PGQTARITCG GNNIGSRSVQ WYQQKPGQAP VLVVYDDSDR PSGIPERFSG SNSGNMATLT
    241 ISRVEAGDEA DYYCQVWDSS SDHVVFGGGT KLTVLGQPRA APSVTLFPPS AAARTKLFWI
    301 SYSDGDQCAS SPCQNGGSCK DQLQSYICFC LPAFEGRNCE THKDDQLICV NENGGCEQYC
    351 SDHTGTKRSC RCHEGYSLLA DGVSCTPTVE YPCGKIPILE KRNASKPQGR IVGGKVCPKG
    421 ECPWQVLLLV NGAQLCGGTL INTIWVVSAA HCFDKIKNWR NLIAVLGEHD LSEHDGDEQS
    481 RRVAQVIIPS TYVPGTTNHD IALLRLHQPV VLTDHVVPLC LPERTFSERT LAFVRFSLVS
    541 GWGQLLDRGA TALELMVLNV PRLMTQDCLQ QSRKVGDSPN ITEYMFCAGY SDGSKDSCKG
    601 DSGGPHATHY RGTWYLTGIV SWGQGCATVG HFGVYTRVSQ YIEWLQKLMR SEPRPGVLLR
    661 APFPGGGGSG GGGSGGGGSG GGGSGGGGSG GGGSDKTHTC PPCPAPELLG GPSVFLFPPK
    721 PKDTLMISRT PEVTCVVVDV SHEDPEVKFN WYVDGVEVHN AKTKPREEQY NSTYRVVSVL
    781 TVLHQDWLNG KEYKCKVSNK ALPAPIEKTI SKAKGQPREP QVYTLPPSRD ELTKNQVSLT
    841 CLVKGFYPSD IAVEWESNGQ PENNYKTTPP VLDSDGSFFL YSKLTVDKSR WQQGNVFSCS
    901 VMHEALHNHY TQKSLSLSPG KGGGGSGGGG SGGGGSGGGG SDKTHTCPPC PAPELLGGPS
    961 VFLFPPKPKD TLMISRTPEV TCVVVDVSHE DPEVKFNWYV DGVEVHNAKT KPREEQYNST
    1021 YRVVSVLTVL HQDWLNGKEY KCKVSNKALP APIEKTISKA KGQPREPQVY TLPPSRDELT
    1081 KNQVSLTCLV KGFYPSDIAV EWESNGQPEN NYKTTPPVLD SDGSFFLYSK LTVDKSRWQQ
    1141 GNVFSCSVMH EALHNHYTQK SLSLSPGK*
  • DNA sequence FVII-039 
       1 ATGGTCTCCC AGGCCCTCAG GCTCCTCTGC CTTCTGCTTG GGCTTCAGGG CTGCCTGGCT 
      61 GCAGTCTTCG TAACCCAGGA GGAAGCCCAC GGCGTCCTGC ACCGGCGCCG GCGCGCCAAC 
     121 GCGTTCCTGG AGGAGCTGCG GCCGGGCTCC CTGGAGAGGG AGTGCAAGGA GGAGCAGTGC 
     181 TCCTTCGAGG AGGCCCGGGA GATCTTCAAG GACGCGGAGA GGACGAAGCT GTTCTGGATT 
     241 TCTTACAGTG ATGGGGACCA GTGTGCCTCA AGTCCATGCC AGAATGGGGG CTCCTGCAAG 
     301 GACCAGCTCC AGTCCTATAT CTGCTTCTGC CTCCCTGCCT TCGAGGGCCG GAACTGTGAG 
     361 ACGCACAAGG ATGACCAGCT GATCTGTGTG AACGAGAACG GCGGCTGTGA GCAGTACTGC 
     421 AGTGACCACA CGGGCACCAA GCGCTCCTGT CGGTGCCACG AGGGGTACTC TCTGCTGGCA 
     481 GACGGGGTGT CCTGCACACC CACAGTTGAA TATCCATGTG GAAAAATACC TATTCTAGAA 
     541 AAAAGAAATG CCAGCAAACC CCAAGGCCGA GGCGGAGGAG ACTTCACTCG GGTTGTGGGG 
     601 GGCAAGGTGT GCCCCAAAGG GGAGTGTCCA TGGCAGGTCC TGTTGTTGGT GAATGGAGCT 
     661 CAGTTGTGTG GGGGGACCCT GATCAACACC ATCTGGGTGG TCTCCGCGGC CCACTGTTTC 
     721 GACAAAATCA AGAACTGGAG GAACCTGATC GCGGTGCTGG GCGAGCACGA CCTCAGCGAG 
     781 CACGACGGGG ATGAGCAGAG CCGGCGGGTG GCGCAGGTCA TCATCCCCAG CACGTACGTC 
     841 CCGGGCACCA CCAACCACGA CATCGCGCTG CTCCGCCTGC ACCAGCCCGT GGTCCTCACT 
     901 GACCATGTGG TGCCCCTCTG CCTGCCCGAA CGGACGTTCT CTGAGAGGAC GCTGGCCTTC 
     961 GTGCGCTTCT CATTGGTCAG CGGCTGGGGC CAGCTGCTGG ACCGTGGCGC CACGGCCCTG 
    1021 GAGCTCATGG TCCTCAACGT GCCCCGGCTG ATGACCCAGG ACTGCCTGCA GCAGTCACGG 
    1081 AAGGTGGGAG ACTCCCCAAA TATCACGGAG TACATGTTCT GTGCCGGCTA CTCGGATGGC 
    1141 AGCAAGGACT CCTGCAAGGG GGACAGTGGA GGCCCACATG CCACCCACTA CCGGGGCACG 
    1201 TGGTACCTGA CGGGCATCGT CAGCTGGGGC CAGGGCTGCG CAACCGTGGG CCACTTTGGG 
    1261 GTGTACACCA GGGTCTCCCA GTACATCGAG TGGCTGCAAA AGCTCATGCG CTCAGAGCCA 
    1321 CGCCCAGGAG TCCTCCTGCG AGCCCCATTT CCCGGTGGCG GTGGCTCCGG CGGAGGTGGG 
    1381 TCCGGTGGCG GCGGATCAGG TGGGGGTGGA TCAGGCGGTG GAGGTTCCGG TGGCGGGGGA 
    1441 TCCGACAAAA CTCACACATG CCCACCGTGC CCAGCTCCGG AACTCCTGGG CGGACCGTCA 
    1501 GTCTTCCTCT TCCCCCCAAA ACCCAAGGAC ACCCTCATGA TCTCCCGGAC CCCTGAGGTC 
    1561 ACATGCGTGG TGGTGGACGT GAGCCACGAA GACCCTGAGG TCAAGTTCAA CTGGTACGTG 
    1621 GACGGCGTGG AGGTGCATAA TGCCAAGACA AAGCCGCGGG AGGAGCAGTA CAACAGCACG 
    1681 TACCGTGTGG TCAGCGTCCT CACCGTCCTG CACCAGGACT GGCTGAATGG CAAGGAGTAC 
    1741 AAGTGCAAGG TCTCCAACAA AGCCCTCCCA GCCCCCATCG AGAAAACCAT CTCCAAAGCC 
    1801 AAAGGGCAGC CCCGAGAACC ACAGGTGTAC ACCCTGCCCC CATCCCGGGA TGAGCTGACC 
    1861 AAGAACCAGG TCAGCCTGAC CTGCCTGGTC AAAGGCTTCT ATCCCAGCGA CATCGCCGTG 
    1921 GAGTGGGAGA GCAATGGGCA GCCGGAGAAC AACTACAAGA CCACGCCTCC CGTGTTGGAC 
    1981 TCCGACGGCT CCTTCTTCCT CTACAGCAAG CTCACCGTGG ACAAGAGCAG GTGGCAGCAG 
    2041 GGGAACGTCT TCTCATGCTC CGTGATGCAT GAGGCTCTGC ACAACCACTA CACGCAGAAG 
    2101 AGCCTCTCCC TGTCTCCGGG TAAAGGTGGC GGCGGATCAG GTGGGGGTGG ATCAGGCGGT 
    2161 GGAGGTTCCG GTGGCGGGGG ATCAGACAAA ACTCACACAT GCCCACCGTG CCCAGCACCT 
    2221 GAACTCCTGG GAGGACCGTC AGTCTTCCTC TTCCCCCCAA AACCCAAGGA CACCCTCATG 
    2281 ATCTCCCGGA CCCCTGAGGT CACATGCGTG GTGGTGGACG TGAGCCACGA AGACCCTGAG 
    2341 GTCAAGTTCA ACTGGTACGT GGACGGCGTG GAGGTGCATA ATGCCAAGAC AAAGCCGCGG 
    2401 GAGGAGCAGT ACAACAGCAC GTACCGTGTG GTCAGCGTCC TCACCGTCCT GCACCAGGAC 
    2461 TGGCTGAATG GCAAGGAGTA CAAGTGCAAG GTCTCCAACA AAGCCCTCCC AGCCCCCATC 
    2521 GAGAAAACCA TCTCCAAAGC CAAAGGGCAG CCCCGAGAAC CACAGGTGTA CACCCTGCCC 
    2581 CCATCCCGCG ATGAGCTGAC CAAGAACCAG GTCAGCCTGA CCTGCCTGGT CAAAGGCTTC 
    2641 TATCCCAGCG ACATCGCCGT GGAGTGGGAG AGCAATGGGC AGCCGGAGAA CAACTACAAG 
    2701 ACCACGCCTC CCGTGTTGGA CTCCGACGGC TCCTTCTTCC TCTACAGCAA GCTCACCGTG 
    2761 GACAAGAGCA GGTGGCAGCA GGGGAACGTC TTCTCATGCT CCGTGATGCA TGAGGCTCTG 
    2821 CACAACCACT ACACGCAGAA GAGCCTCTCC CTGTCTCCGG GTAAATGA 
  • FVII-039 amino acid sequence. Signal sequence is shown in dotted underline, propeptide is double underlined, the FXIa cleavage site is shown in dashed underline, the linker region connecting FVII heavy chain to Fc region is underlined, and the linker region connecting the Fc regions is shown in bold
  • Figure US20210355473A1-20211118-C00044
     61 SFEEAREIFK DAERTKLFWI SYSDGDQCAS SPCQNGGSCK DQLQSYICFC LPAFEGRNCE
    121 THKDDQLICV NENGGCEQYC SDHTGTKRSC RCHEGYSLLA DGVSCTPTVE YPCGKIPILE
    Figure US20210355473A1-20211118-C00045
    241 DKIKNWRNLI AVLGEHDLSE HDGDEQSRRV AQVIIPSTYV PGTTNHDIAL LRLHQPVVLT
    301 DHVVPLCLPE RTFSERTLAF VRFSLVSGWG QLLDRGATAL ELMVLNVPRL MTQDCLQQSR
    361 KVGDSPNITE YMFCAGYSDG SKDSCKGDSG GPHATHYRGT WYLTGIVSWG QGCATVGHFG
    421 VYTRVSQYIE WLQKLMRSEP RPGVLLRAPF PGGGGSGGGG SGGGGSGGGG SGGGGSGGGG
    481 SDKTHTCPPC PAPELLGGPS VFLFPPKPKD TLMISRTPEV TCVVVDVSHE DPEVKFNWYV
    541 DGVEVHNAKT KPREEQYNST YRVVSVLTVL HQDWLNGKEY KCKVSNKALP APIEKTISKA
    601 KGQPREPQVY TLPPSRDELT KNQVSLTCLV KGFYPSDIAV EWESNGQPEN NYKTTPPVLD
    661 SDGSFFLYSK LTVDKSRWQQ GNVFSCSVMH EALHNHYTQK SLSLSPGKGG GGSGGGGSGG
    721 GGSGGGGSDK THTCPPCPAP ELLGGPSVFL FPPKPKDTLM ISRTPEVTCV VVDVSHEDPE
    781 VKFNWYVDGV EVHNAKTKPR EEQYNSTYRV VSVLTVLHQD WLNGKEYKCK VSNKALPAPI
    841 EKTISKAKGQ PREPQVYTLP PSRDELTKNQ VSLTCLVKGF YPSDIAVEWE SNGQPENNYK
    901 TTPPVLDSDG SFFLYSKLTV DKSRWQQGNV FSCSVMHEAL HNHYTQKSLS LSPGK*
  • DNA sequence for FVII-040 
       1 ATGGTCTCCC AGGCCCTCAG GCTCCTCTGC CTTCTGCTTG GGCTTCAGGG CTGCCTGGCT 
      61 GCAGTCTTCG TAACCCAGGA GGAAGCCCAC GGCGTCCTGC ACCGGCGCCG GCGCGCCAAC 
     121 GCGTTCCTGG AGGAGCTGCG GCCGGGCTCC CTGGAGAGGG AGTGCAAGGA GGAGCAGTGC 
     181 TCCTTCGAGG AGGCCCGGGA GATCTTCAAG GACGCGGAGA GGACGAAGCT GTTCTGGATT 
     241 TCTTACAGTG ATGGGGACCA GTGTGCCTCA AGTCCATGCC AGAATGGGGG CTCCTGCAAG 
     301 GACCAGCTCC AGTCCTATAT CTGCTTCTGC CTCCCTGCCT TCGAGGGCCG GAACTGTGAG 
     361 ACGCACAAGG ATGACCAGCT GATCTGTGTG AACGAGAACG GCGGCTGTGA GCAGTACTGC 
     421 AGTGACCACA CGGGCACCAA GCGCTCCTGT CGGTGCCACG AGGGGTACTC TCTGCTGGCA 
     461 GACGGGGTGT CCTGCACACC CACAGTTGAA TATCCATGTG GAAAAATACC TATTCTAGAA 
     541 AAAAGAAATG CCAGCAAACC CCAAGGCGGC GGAGGAGACT TCACTCGGGT TGTGGGGGGC 
     601 AAGGTGTGCC CCAAAGGGGA GTGTCCATGG CAGGTCCTGT TGTTGGTGAA TGGAGCTCAG 
     661 TTGTGTGGGG GGACCCTGAT CAACACCATC TGGGTGGTCT CCGCGGCCCA CTGTTTCGAC 
     721 AAAATCAAGA ACTGGAGGAA CCTGATCGCG GTGCTGGGCG AGCACGACCT CAGCGAGCAC 
     781 GACGGGGATG AGCAGAGCCG GCGGGTGGCG CAGGTCATCA TCCCCAGCAC GTACGTCCCG 
     841 GGCACCACCA ACCACGACAT CGCGCTGCTC CGCCTGCACC AGCCCGTGGT CCTCACTGAC 
     901 CATGTGGTGC CCCTCTGCCT GCCCGAACGG ACGTTCTCTG AGAGGACGCT GGCCTTCGTG 
     961 CGCTTCTCAT TGGTCAGCGG CTGGGGCCAG CTGCTGGACC GTGGCGCCAC GGCCCTGGAG 
    1021 CTCATGGTCC TCAACGTGCC CCGGCTGATG ACCCAGGACT GCCTGCAGCA GTCACGGAAG 
    1061 GTGGGAGACT CCCCAAATAT CACGGAGTAC ATGTTCTGTG CCGGCTACTC GGATGGCAGC 
    1141 AAGGACTCCT GCAAGGGGGA CAGTGGAGGC CCACATGCCA CCCACTACCG GGGCACGTGG 
    1201 TACCTGACGG GCATCGTCAG CTGGGGCCAG GGCTGCGCAA CCGTGGGCCA CTTTGGGGTG 
    1261 TACACCAGGG TCTCCCAGTA CATCGAGTGG CTGCAAAAGC TCATGCGCTC AGAGCCACGC 
    1321 CCAGGAGTCC TCCTGCGAGC CCCATTTCCC GGTGGCGGTG GCTCCGGCGG AGGTGGGTCC 
    1381 GGTGGCGGCG GATCAGGTGG GGGTGGATCA GGCGGTGGAG GTTCCGGTGG CGGGGGATCC 
    1441 GACAAAACTC ACACATGCCC ACCGTGCCCA GCTCCGGAAC TCCTGGGCGG ACCGTCAGTC 
    1501 TTCCTCTTCC CCCCAAAACC CAAGGACACC CTCATGATCT CCCGGACCCC TGAGGTCACA 
    1561 TGCGTGGTGG TGGACGTGAG CCACGAAGAC CCTGAGGTCA AGTTCAACTG GTACGTGGAC 
    1621 GGCGTGGAGG TGCATAATGC CAAGACAAAG CCGCGGGAGG AGCAGTACAA CAGCACGTAC 
    1681 CGTGTGGTCA GCGTCCTCAC CGTCCTGCAC CAGGACTGGC TGAATGGCAA GGAGTACAAG 
    1741 TGCAAGGTCT CCAACAAAGC CCTCCCAGCC CCCATCGAGA AAACCATCTC CAAAGCCAAA 
    1801 GGGCAGCCCC GAGAACCACA GGTGTACACC CTGCCCCCAT CCCGGGATGA GCTGACCAAG 
    1861 AACCAGGTCA GCCTGACCTG CCTGGTCAAA GGCTTCTATC CCAGCGACAT CGCCGTGGAG 
    1921 TGGGAGAGCA ATGGGCAGCC GGAGAACAAC TACAAGACCA CGCCTCCCGT GTTGGACTCC 
    1981 GACGGCTCCT TCTTCCTCTA CAGCAAGCTC ACCGTGGACA AGAGCAGGTG GCAGCAGGGG 
    2041 AACGTCTTCT CATGCTCCGT GATGCATGAG GCTCTGCACA ACCACTACAC GCAGAAGAGC 
    2101 CTCTCCCTGT CTCCGGGTAA AGGTGGCGGC GGATCAGGTG GGGGTGGATC AGGCGGTGGA 
    2161 GGTTCCGGTG GCGGGGGATC AGACAAAACT CACACATGCC CACCGTGCCC AGCACCTGAA 
    2221 CTCCTGGGAG GACCGTCAGT CTTCCTCTTC CCCCCAAAAC CCAAGGACAC CCTCATGATC 
    2281 TCCCGGACCC CTGAGGTCAC ATGCGTGGTG GTGGACGTGA GCCACGAAGA CCCTGAGGTC 
    2341 AAGTTCAACT GGTACGTGGA CGGCGTGGAG GTGCATAATG CCAAGACAAA GCCGCGGGAG 
    2401 GAGCAGTACA ACAGCACGTA CCGTGTGGTC AGCGTCCTCA CCGTCCTGCA CCAGGACTGG 
    2461 CTGAATGGCA AGGAGTACAA GTGCAAGGTC TCCAACAAAG CCCTCCCAGC CCCCATCGAG 
    2521 AAAACCATCT CCAAAGCCAA AGGGCAGCCC CGAGAACCAC AGGTGTACAC CCTGCCCCCA 
    2581 TCCCGCGATG AGCTGACCAA GAACCAGGTC AGCCTGACCT GCCTGGTCAA AGGCTTCTAT 
    2641 CCCAGCGACA TCGCCGTGGA GTGGGAGAGC AATGGGCAGC CGGAGAACAA CTACAAGACC 
    2701 ACGCCTCCCG TGTTGGACTC CGACGGCTCC TTCTTCCTCT ACAGCAAGCT CACCGTGGAC 
    2761 AAGAGCAGGT GGCAGCAGGG GAACGTCTTC TCATGCTCCG TGATGCATGA GGCTCTGCAC 
    2821 AACCACTACA CGCAGAAGAG CCTCTCCCTG TCTCCGGGTA AATGA 
  • FVII-040 amino acid sequence. Signal sequence is shown in dotted underline, propeptide is double underlined, the FXIa cleavage site is shown in dashed underline, the linker region connecting FVII heavy chain to Fc region is underlined, and the linker region connecting the Fc regions is shown in bold
  • Figure US20210355473A1-20211118-C00046
     61 SFEEAREIFK DAERTKLFWI SYSDGDQCAS SPCQNGGSCK DQLQSYICFC LPAFEGRNCE
    121 THKDDQLICV NENGGCEQYC SDHTGTKRSC RCHEGYSLLA DGVSCTPTVE YPCGKIPILE
    Figure US20210355473A1-20211118-C00047
    241 KIKNWRNLIA VLGEHDLSEH DGDEQSRRVA QVIIPSTYVP GTTNHDIALL RLHQPVVLTD
    301 HVVPLCLPER TFSERTLAFV RFSLVSGWGQ LLDRGATALE LMVLNVPRLM TQDCLQQSRK
    361 VGDSPNITEY MFCAGYSDGS KDSCKGDSGG PHATHYRGTW YLTGIVSWGQ GCATVGHFGV
    421 YTRVSQYIEW LQKLMRSEPR PGVLLRAPFP GGGGSGGGGS GGGGSGGGGS GGGGSGGGGS
    461 DKTHTCPPCP APELLGGPSV FLFPPKPKDT LMISRTPEVT CVVVDVSHED PEVKFNWYVD
    541 GVEVHNAKTK PREEQYNSTY RVVSVLTVLH QDWLNGKEYK CKVSNKALPA PIEKTISKAK
    601 GQPREPQVYT LPPSRDELTK NQVSLTCLVK GFYPSDIAVE WESNGQPENN YKTTPPVLDS
    661 DGSFFLYSKL TVDKSRWQQG NVFSCSVMHE ALHNHYTQKS LSLSPGKGGG GSGGGGSGGG
    721 GSGGGGSDKT HTCPPCPAPE LLGGPSVFLF PPKPKDTLMI SRTPEVTCVV VDVSHEDPEV
    781 KFNWYVDGVE VHNAKTKPRE EQYNSTYRVV SVLTVLHQDW LNGKEYKCKV SNKALPAPIE
    841 KTISKAKGQP REPQVYTLPP SRDELTKNQV SLTCLVKGFY PSDIAVEWES NGQPENNYKT
    901 TPPVLDSDGS FFLYSKLTVD KSRWQQGNVF SCSVMHEALH NHYTQKSLSL SPGK*
  • DNA sequence for FIX-042 
       1 ATGCAGCGCG TGAACATGAT CATGGCAGAA TCACCAGGCC TCATCACCAT CTGCCTTTTA 
      61 GGATATCTAC TCAGTGCTGA ATGTACAGGT TTGTTTCCTT TTTTAAAATA CATTGAGTAT 
     121 GCTTGCCTTT TAGATATAGA AATATCTGAT GCTGTCTTCT TCACTAAATT TTGATTACAT 
     181 GATTTGACAG CAATATTGAA GAGTCTAACA GCCAGCACGC AGGTTGGTAA GTACTGTGGG 
     241 AACATCACAG ATTTTGGCTC CATGCCCTAA AGAGAAATTG GCTTTCAGAT TATTTGGATT 
     301 AAAAACAAAG ACTTTCTTAA GAGATGTAAA ATTTTCATGA TGTTTTCTTT TTTGCTAAAA 
     361 CTAAAGAATT ATTCTTTTAC ATTTCAGTTT TTCTTGATCA TGAAAACGCC AACAAAATTC 
     461 TGAATCGGCC AAAGAGGTAT AATTCAGGTA AATTGGAAGA GTTTGTTCAA GGGAATCTAG 
     461 AGAGAGAATG TATGGAAGAA AAGTGTAGTT TTGAAGAAGC ACGAGAAGTT TTTGAAAACA 
     541 CTGAAAGAAC AACTGAATTT TGGAAGCAGT ATGTTGATGG AGATCAGTGT GAGTCCAATC 
     601 CATGTTTAAA TGGCGGCAGT TGCAAGGATG ACATTAATTC CTATGAATGT TGGTGTCCCT 
     661 TTGGATTTGA AGGAAAGAAC TGTGAATTAG ATGTAACATG TAACATTAAG AATGGCAGAT 
     721 GCGAGCAGTT TTGTAAAAAT AGTGCTGATA ACAAGGTGGT TTGCTCCTGT ACTGAGGGAT 
     181 ATCGACTTGC AGAAAACCAG AAGTCCTGTG AACCAGCAGT GCCATTTCCA TGTGGAAGAG 
     841 TTTCTGTTTC ACAAACTTCT AAGCTCACCC GTGCTGAGAC TGTTTTTCCT GATGTGGACT 
     901 ATGTAAATTC TACTGAAGCT GAAACCATTT TGGATAACAT CACTCAAAGC ACCCAATCAT 
     961 TTAATGACTT CACTCGGGTT GTTGGTGGAG AAGATGCCAA ACCAGGTCAA TTCCCTTGGC 
    1021 AGGTTGTTTT GAATGGTAAA GTTGATGCAT TCTGTGGAGG CTCTATCGTT AATGAAAAAT 
    1081 GGATTGTAAC TGCTGCCCAC TGTGTTGAAA CTGGTGTTAA AATTACAGTT GTCGCAGGTG 
    1141 AACATAATAT TGAGGAGACA GAACATACAG AGCAAAAGCG AAATGTGATT CGAATTATTC 
    1201 CTCACCACAA CTACAATGCA GCTATTAATA AGTACAACCA TGACATTGCC CTTCTGGAAC 
    1281 TGGACGAACC CTTAGTGCTA AACAGCTACG TTACACCTAT TTGCATTGCT GACAAGGAAT 
    1321 ACACGAACAT CTTCCTCAAA TTTGGATCTG GCTATGTAAG TGGCTGGGGA AGAGTCTTCC 
    1381 ACAAAGGGAG ATCAGCTTTA GTTCTTCAGT ACCTTAGAGT TCCACTTGTT GACCGAGCCA 
    1441 CATGTCTTCG ATCTACAAAG TTCACCATCT ATAACAACAT GTTCTGTGCT GGCTTCCATG 
    1501 AAGGAGGTAG AGATTCATGT CAAGGAGATA GTGGGGGACC CCATGTTACT GAAGTGGAAG 
    1561 GGACCAGTTT CTTAACTGGA ATTATTAGCT GGGGTGAAGA GTGTGCAATG AAAGGCAAAT 
    1621 ATGGAATATA TACCAAGGTG TCCCGGTATG TCAACTGGAT TAAGGAAAAA ACAAAGCTCA 
    1681 CTGACAAAAC TCACACATGC CCACCGTGCC CAGCTCCGGA ACTCCTGGGC GGACCGTCAG 
    1741 TCTTCCTCTT CCCCCCAAAA CCCAAGGACA CCCTCATGAT CTCCCGGACC CCTGAGGTCA 
    1801 CATGCGTGGT GGTGGACGTG AGCCACGAAG ACCCTGAGGT CAAGTTCAAC TGGTACGTGG 
    1861 ACGGCGTGGA GGTGCATAAT GCCAAGACAA AGCCGCGGGA GGAGCAGTAC AACAGCACGT 
    1921 ACCGTGTGGT CAGCGTCCTC ACCGTCCTGC ACCAGGACTG GCTGAATGGC AAGGAGTACA 
    1981 AGTGCAAGGT CTCCAACAAA GCCCTCCCAG CCCCCATCGA GAAAACCATC TCCAAAGCCA 
    2041 AAGGGCAGCC CCGAGAACCA CAGGTGTACA CCCTGCCCCC ATCCCGGGAT GAGCTGACCA 
    2101 AGAACCAGGT CAGCCTGACC TGCCTGGTCA AAGGCTTCTA TCCCAGCGAC ATCGCCGTGG 
    2161 AGTGGGAGAG CAATGGGCAG CCGGAGAACA ACTACAAGAC CACGCCTCCC GTGTTGGACT 
    2221 CCGACGGCTC CTTCTTCCTC TACAGCAAGC TCACCGTGGA CAAGAGCAGG TGGCAGCAGG 
    2281 GGAACGTCTT CTCATGCTCC GTGATGCATG AGGCTCTGCA CAACCACTAC ACGCAGAAGA 
    2341 GCCTCTCCCT GTCTCCGGGT AAAGGTGGCG GCGGATCAGG TGGGGGTGGA TCAGGCGGTG 
    2401 GAGGTTCCGG TGGCGGGGGA TCAGACAAAA CTCACACATG CCCACCGTGC CCAGCACCTG 
    2461 AACTCCTGGG AGGACCGTCA GTCTTCCTCT TCCCCCCAAA ACCCAAGGAC ACCCTCATGA 
    2521 TCTCCCGGAC CCCTGAGGTC ACATGCGTGG TGGTGGACGT GAGCCACGAA GACCCTGAGG 
    2581 TCAAGTTCAA CTGGTACGTG GACGGCGTGG AGGTGCATAA TGCCAAGACA AAGCCGCGGG 
    2641 AGGAGCAGTA CAACAGCACG TACCGTGTGG TCAGCGTCCT CACCGTCCTG CACCAGGACT 
    2701 GGCTGAATGG CAAGGAGTAC AAGTGCAAGG TCTCCAACAA AGCCCTCCCA GCCCCCATCG 
    2761 AGAAAACCAT CTCCAAAGCC AAAGGGCAGC CCCGAGAACC ACAGGTGTAC ACCCTGCCCC 
    2821 CATCCCGCGA TGAGCTGACC AAGAACCAGG TCAGCCTGAC CTGCCTGGTC AAAGGCTTCT 
    2881 ATCCCAGCGA CATCGCCGTG GAGTGGGAGA GCAATGGGCA GCCGGAGAAC AACTACAAGA 
    2941 CCACGCCTCC CGTGTTGGAC TCCGACGGCT CCTTCTTCCT CTACAGCAAG CTCACCGTGG 
    3001 ACAAGAGCAG GTGGCAGCAG GGGAACGTCT TCTCATGCTC CGTGATGCAT GAGGCTCTGC 
    3061 ACAACCACTA CACGCAGAAG AGCCTCTCCC TGTCTCCGGG TAAATGA 
  • FIX-042 amino acid sequence. Signal sequence is shown in dotted underline, propeptide is double underlined, and linker region connecting the Fc regions is underlined
  • Figure US20210355473A1-20211118-C00048
     61 ERECMEEKCS FEEAREVFEN TERTTEFWKQ YVDGDQCESN PCLNGGSCKD DINSYECWCP
    121 FGFEGKNCEL DVTCNIKNGR CEQFCKNSAD NKVVCSCTEG YRLAENQKSC EPAVPFPCGR
    181 VSVSQTSKLT RAETVFPDVD YVNSTEAETI LDNITQSTQS FNDFTRVVGG EDAKPGQFPW
    241 QVVLNGKVDA FCGGSIVNEK WIVTAAHCVE TGVKITVVAG EHNIEETEHT EQKRNVIRII
    301 PHHNYNAAIN KYNHDIALLE LDEPLVLNSY VTPICIADKE YTNIFLKFGS GYVSGWGRVF
    361 HKGRSALVLQ YLRVPLVDRA TCLRSTKFTI YNNMFCAGFH EGGRDSCQGD SGGPHVTEVE
    421 GTSFLTGIIS WGEECAMKGK YGIYTKVSRY VNWIKEKTKL TDKTHTCPPC PAPELLGGPS
    481 VFLFPPKPKD TLMISRTPEV TCVVVDVSHE DPEVKFNWYV DGVEVHNAKT KPREEQYNST
    541 YRVVSVLTVL HQDWLNGKEY KCKVSNKALP APIEKTISKA KGQPREPQVY TLPPSRDELT
    601 KNQVSLTCLV KGFYPSDIAV EWESNGQPEN NYKTTPPVLD SDGSFFLYSK LTVDKSRWQQ
    661 GNVFSCSVMH EALHNHYTQK SLSLSPGKGG GGSGGGGSGG GGSGGGGSDK THTCPPCPAP
    721 ELLGGPSVFL FPPKPKDTLM ISRTPEVTCV VVDVSHEDPE VKFNWYVDGV EVHNAKTKPR
    781 EEQYNSTYRV VSVLTVLHQD WLNGKEYKCK VSNKALPAPI EKTISKAKGQ PREPQVYTLP
    841 PSRDELTKNQ VSLTCLVKGF YPSDIAVEWE SNGQPENNYK TTPPVLDSDG SFFLYSKLTV
    901 DKSRWQQGNV FSCSVMHEAL HNHYTQKSLS LSPGK*
  • DNA sequence for FIX-068
  •    1 ATGCAGCGCG TGAACATGAT CATGGCAGAA TCACCAGGCC TCATCACCAT CTGCCTTTTA 
      61 GGATATCTAC TCAGTGCTGA ATGTACAGGT TTGTTTCCTT TTTTAAAATA CATTGAGTAT 
     121 GCTTGCCTTT TAGATATAGA AATATCTGAT GCTGTCTTCT TCACTAAATT TTGATTACAT 
     181 GATTTGACAG CAATATTGAA GAGTCTAACA GCCAGCACGC AGGTTGGTAA GTACTGTGGG 
     241 AACATCACAG ATTTTGGCTC CATGCCCTAA AGAGAAATTG GCTTTCAGAT TATTTGGATT 
     301 AAAAACAAAG ACTTTCTTAA GAGATGTAAA ATTTTCATGA TGTTTTCTTT TTTGCTAAAA 
     361 CTAAAGAATT ATTCTTTTAC ATTTCAGTTT TTCTTGATCA TGAAAACGCC AACAAAATTC 
     421 TGAATCGGCC AAAGAGGTAT AATTCAGGTA AATTGGAAGA GTTTGTTCAA GGGAATCTAG 
     481 AGAGAGAATG TATGGAAGAA AAGTGTAGTT TTGAAGAAGC ACGAGAAGTT TTTGAAAACA 
     541 CTGAAAGAAC AACTGAATTT TGGAAGCAGT ATGTTGATGG AGATCAGTGT GAGTCCAATC 
     601 CATGTTTAAA TGGCGGCAGT TGCAAGGATG ACATTAATTC CTATGAATGT TGGTGTCCCT 
     661 TTGGATTTGA AGGAAAGAAC TGTGAATTAG ATGTAACATG TAACATTAAG AATGGCAGAT 
     721 GCGAGCAGTT TTGTAAAAAT AGTGCTGATA ACAAGGTGGT TTGCTCCTGT ACTGAGGGAT 
     781 ATCGACTTGC AGAAAACCAG AAGTCCTGTG AACCAGCAGT GCCATTTCCA TGTGGAAGAG 
     841 TTTCTGTTTC ACAAACTTCT AAGCTCACCC GTGCTGAGAC TGTTTTTCCT GATGTGGACT 
     901 ATGTAAATTC TACTGAAGCT GAAACCATTT TGGATAACAT CACTCAAAGC ACCCAATCAT 
     961 TTAATGACTT CACTCGGGTT GTTGGTGGAG AAGATGCCAA ACCAGGTCAA TTCCCTTGGC 
    1021 AGGTTGTTTT GAATGGTAAA GTTGATGCAT TCTGTGGAGG CTCTATCGTT AATGAAAAAT 
    1061 GGATTGTAAC TGCTGCCCAC TGTGTTGAAA CTGGTGTTAA AATTACAGTT GTCGCAGGTG 
    1141 AACATAATAT TGAGGAGACA GAACATACAG AGCAAAAGCG AAATGTGATT CGAATTATTC 
    1201 CTCACCACAA CTACAATGCA GCTATTAATA AGTACAACCA TGACATTGCC CTTCTGGAAC 
    1261 TGGACGAACC CTTAGTGCTA AACAGCTACG TTACACCTAT TTGCATTGCT GACAAGGAAT 
    1321 ACACGAACAT CTTCCTCAAA TTTGGATCTG GCTATGTAAG TGGCTGGGGA AGAGTCTTCC 
    1301 ACAAAGGGAG ATCAGCTTTA GTTCTTCAGT ACCTTAGAGT TCCACTTGTT GACCGAGCCA 
    1441 CATGTCTTCG ATCTACAAAG TTCACCATCT ATAACAACAT GTTCTGTGCT GGCTTCCATG 
    1501 AAGGAGGTAG AGATTCATGT CAAGGAGATA GTGGGGGACC CCATGTTACT GAAGTGGAAG 
    1561 GGACCAGTTT CTTAACTGGA ATTATTAGCT GGGGTGAAGA GTGTGCAATG AAAGGCAAAT 
    1621 ATGGAATATA TACCAAGGTG TCCCGGTATG TCAACTGGAT TAAGGAAAAA ACAAAGCTCA 
    1601 CTGACAAAAC TCACACATGC CCACCGTGCC CAGCTCCGGA ACTCCTGGGC GGACCGTCAG 
    1741 TCTTCCTCTT CCCCCCAAAA CCCAAGGACA CCCTCATGAT CTCCCGGACC CCTGAGGTCA 
    1801 CATGCGTGGT GGTGGACGTG AGCCACGAAG ACCCTGAGGT CAAGTTCAAC TGGTACGTGG 
    1061 ACGGCGTGGA GGTGCATAAT GCCAAGACAA AGCCGCGGGA GGAGCAGTAC AACAGCACGT 
    1921 ACCGTGTGGT CAGCGTCCTC ACCGTCCTGC ACCAGGACTG GCTGAATGGC AAGGAGTACA 
    1901 AGTGCAAGGT CTCCAACAAA GCCCTCCCAG CCCCCATCGA GAAAACCATC TCCAAAGCCA 
    2041 AAGGGCAGCC CCGAGAACCA CAGGTGTACA CCCTGCCCCC ATCCCGGGAT GAGCTGACCA 
    2101 AGAACCAGGT CAGCCTGACC TGCCTGGTCA AAGGCTTCTA TCCCAGCGAC ATCGCCGTGG 
    2161 AGTGGGAGAG CAATGGGCAG CCGGAGAACA ACTACAAGAC CACGCCTCCC GTGTTGGACT 
    2221 CCGACGGCTC CTTCTTCCTC TACAGCAAGC TCACCGTCGA CAAGAGCAGG TGGCAGCAGG 
    2261 GGAACGTCTT CTCATGCTCC GTGATGCATG AGGCTCTGCA CAACCACTAC ACGCAGAAGA 
    2341 GCCTCTCCCT GTCTCCGGGT AAACGGCGCC GCCGGAGCGG TGGCGGCGGA TCAGGTGGGG 
    2401 GTGGATCAGG CGGTGGAGGT TCCGGTGGCG GGGGATCCGG CGGTGGAGGT TCCGGTGGGG 
    2461 GTGGATCAAG GAAGAGGAGG AAGAGGGCGC AGGTGCAGCT GCAGGAGTCT GGGGGAGGCT 
    2521 TGGTACAGCC TGGGGGGTCC CTGAGACTCT CCTGTGCAGC CTCTGGATTC ATGTTTAGCA 
    2581 GGTATGCCAT GAGCTGGGTC CGCCAGGCTC CAGGGAAGGG GCCAGAGTGG GTCTCAGGTA 
    2641 TTAGTGGTAG TGGTGGTAGT ACATACTACG CAGACTCCGT GAAGGGCCGG TTCACCGTCT 
    2101 CCAGAGACAA TTCCAAGAAC ACGCTGTATC TGCAAATGAA CAGCCTGAGA GCCGAGGACA 
    2761 CGGCTGTATA TTACTGCGCC CGGGGCGCCA CCTACACCAG CCGGAGCGAC GTGCCCGACC 
    2821 AGACCAGCTT CGACTACTGG GGCCAGGGAA CCCTGGTCAC CGTCTCCTCA GGGAGTGCAT 
    2861 CCGCCCCAAA GCTTGAAGAA GGTGAATTTT CAGAAGCACG CGTATCTGAA CTGACTCAGG 
    2941 ACCCTGCTGT GTCTGTGGCC TTGGGACAGA CAGTCAGGAT CACATGCCAA GGAGACAGCC 
    3001 TCAGAAACTT TTATGCAAGC TGGTACCAGC AGAAGCCAGG ACAGGCCCCT ACTCTTGTCA 
    3061 TCTATGGTTT AAGTAAAAGG CCCTCAGGGA TCCCAGACCG ATTCTCTGCC TCCAGCTCAG 
    3121 GAAACACAGC TTCCTTGACC ATCACTGGGG CTCAGGCGGA AGATGAGGCT GACTATTACT 
    3181 GCCTGCTGTA CTACGGCGGC GGCCAGCAGG GCGTGTTCGG CGGCGGCACC AAGCTGACCG 
    3241 TCCTACGTCA GCCCAAGGCT GCCCCCTCGG TCACTCTGTT CCCGCCCTCT TCTGCGGCCG 
    3301 GTGGCGGTGG CTCCGGCGGA GGTGGGTCCG GTGGCGGCGG ATCAGGTGGG GGTGGATCAG 
    3361 GCGGTGGAGG TTCCGGTGGC GGGGGATCAG ACAAAACTCA CACATGCCCA CCGTGCCCAG 
    3421 CACCGGAACT CCTGGGCGGA CCGTCAGTCT TCCTCTTCCC CCCAAAACCC AAGGACACCC 
    3461 TCATGATCTC CCGGACCCCT GAGGTCACAT GCGTGGTGGT GGACGTGAGC CACGAAGACC 
    3541 CTGAGGTCAA GTTCAACTGG TACGTGGACG GCGTGGAGGT GCATAATGCC AAGACAAAGC 
    3601 CGCGGGAGGA GCAGTACAAC AGCACGTACC GTGTGGTCAG CGTCCTCACC GTCCTGCACC 
    3661 AGGACTGGCT GAATGGCAAG GAGTACAAGT GCAAGGTCTC CAACAAAGCC CTCCCAGCCC 
    3721 CCATCGAGAA AACCATCTCC AAAGCCAAAG GGCAGCCCCG AGAACCACAG GTGTACACCC 
    3781 TGCCCCCATC CCGCGATGAG CTGACCAAGA ACCAGGTCAG CCTGACCTGC CTGGTCAAAG 
    3841 GCTTCTATCC CAGCGACATC GCCGTGGAGT GGGAGAGCAA TGGGCAGCCG GAGAACAACT 
    3901 ACAAGACCAC GCCTCCCGTG TTGGACTCCG ACGGCTCCTT CTTCCTCTAC AGCAAGCTCA 
    3961 CCGTGGACAA GAGCAGGTGG CAGCAGGGGA ACGTCTTCTC ATGCTCCGTG ATGCATGAGG 
    4021 CTCTGCACAA CCACTACACG CAGAAGAGCC TCTCCCTGTC TCCGGGTAAA TGA 
  • FIX-068 amino acid sequence. Signal sequence is shown in dotted underline, propeptide is double underlined, linker region connecting SCE5 to Fc region is underlined, and linker with proprotein convertase processing sites is shown in bold
  • Figure US20210355473A1-20211118-C00049
      61 ERECMEEKCS FEEAREVFEN TERTTEFWKQ YVDGDQCESN PCLNGGSCKD DINSYECWCP
     121 FGFEGKNCEL DVTCNIKNGR CEQFCKNSAD NKVVCSCTEG YRLAENQKSC EPAVPFPCGR
     181 VSVSQTSKLT RAETVFPDVD YVNSTEAETI LDNITQSTQS FNDFTRVVGG EDAKPGQFPW
     241 QVVLNGKVDA FCGGSIVNEK WIVTAAHCVE TGVKITVVAG EHNIEETEHT EQKRNVIRII
     301 PHHNYNAAIN KYNHDIALLE LDEPLVLNSY VTPICIADKE YTNIFLKFGS GYVSGWGRVF
     361 HKGRSALVLQ YLRVPLVDRA TCLRSTKFTI YNNMFCAGFH EGGRDSCQGD SGGPHVTEVE
     421 GTSFLTGIIS WGEECAMKGK YGIYTKVSRY VNWIKEKTKL TDKTHTCPPC PAPELLGGPS
     481 VFLFPPKPKD TLMISRTPEV TCVVVDVSHE DPEVKFNWYV DGVEVHNAKT KPREEQYNST
     541 YRVVSVLTVL HQDWLNGKEY KCKVSNKALP APIEKTISKA KGQPREPQVY TLPPSRDELT
     601 KNQVSLTCLV KGFYPSDIAV EWESNGQPEN NYKTTPPVLD SDGSFFLYSK LTVDKSRWQQ
     661 GNVFSCSVMH EALHNHYTQK SLSLSPGKRR RRSGGGGSGG GGSGGGGSGG GGSGGGGSGG
     721 GGSRERRKRA QVQLQESGGG LVQPGGSLRL SCAASGFMFS RYAMSWVRQA PGKGPEWVSG
     781 ISGSGGSTYY ADSVKGRFTV SRDNSKNTLY LQMNSLRAED TAVYYCARGA TYTSRSDVPD
     841 QTSFDYWGQG TLVTVSSGSA SAPKLEEGEF SEARVSELTQ DPAVSVALGQ TVRITCQGDS
     901 LRNFYASWYQ QKPGQAPTLV IYGLSKRPSG IPDRFSASSS GNTASLTITG AQAEDEADYY
     961 CLLYYGGGQQ GVFGGGTKLT VLRQPKAAPS VTLFPPSSAA GGGGSGGGGS GGGGSGGGGS
    1021 GGGGSGGGGS DKTHTCPPCP APELLGGPSV FLFPPKPKDT LMISRTPEVT CVVVDVSHED
    1081 PEVKFNWYVD GVEVHNAKTK PREEQYNSTY RVVSVLTVLH QDWLNGKEYK CKVSNKALPA
    1141 PIEKTISKAK GQPREPQVYT LPPSRDELTK NQVSLTCLVK GFYPSDIAVE WESNGQPENN
    1201 YKTTPPVLDS DGSFFLYSKL TVDKSRWQQG NVFSCSVMHE ALHNHYTQKS LSLSPGK*
  • DNA sequence for FIX-088 
       1 ATGCAGCGCG TGAACATGAT CATGGCAGAA TCACCAGGCC TCATCACCAT CTGCCTTTTA 
      61 GGATATCTAC TCAGTGCTGA ATGTACAGGT TTGTTTCCTT TTTTAAAATA CATTGAGTAT 
     121 GCTTGCCTTT TAGATATAGA AATATCTGAT GCTGTCTTCT TCACTAAATT TTGATTACAT 
     181 GATTTGACAG CAATATTGAA GAGTCTAACA GCCAGCACGC AGGTTGGTAA GTACTGTGGG 
     241 AACATCACAG ATTTTGGCTC CATGCCCTAA AGAGAAATTG GCTTTCAGAT TATTTGGATT 
     301 AAAAACAAAG ACTTTCTTAA GAGATGTAAA ATTTTCATGA TGTTTTCTTT TTTGCTAAAA 
     361 CTAAAGAATT ATTCTTTTAC ATTTCAGTTT TTCTTGATCA TGAAAACGCC AACAAAATTC 
     421 TGAATCGGCC AAAGAGGTAT AATTCAGGTA AATTGGAAGA GTTTGTTCAA GGGAATCTAG 
     481 AGAGAGAATG TATGGAAGAA AAGTGTAGTT TTGAAGAAGC ACGAGAAGTT TTTGAAAACA 
     541 CTGAAAGAAC AACTGAATTT TGGAAGCAGT ATGTTGATGG AGATCAGTGT GAGTCCAATC 
     601 CATGTTTAAA TGGCGGCAGT TGCAAGGATG ACATTAATTC CTATGAATGT TGGTGTCCCT 
     661 TTGGATTTGA AGGAAAGAAC TGTGAATTAG ATGTAACATG TAACATTAAG AATGGCAGAT 
     721 GCGAGCAGTT TTGTAAAAAT AGTGCTGATA ACAAGGTGGT TTGCTCCTGT ACTGAGGGAT 
     781 ATCGACTTGC AGAAAACCAG AAGTCCTGTG AACCAGCAGT GCCATTTCCA TGTGGAAGAG 
     841 TTTCTGTTTC ACAAACTTCT AAGCTCACCC GTGCTGAGAC TGTTTTTCCT GATGTGGACT 
     901 ATGTAAATTC TACTGAAGCT GAAACCATTT TGGATAACAT CACTCAAAGC ACCCAATCAT 
     961 TTAATGACTT CACTCGGGTT GTTGGTGGAG AAGATGCCAA ACCAGGTCAA TTCCCTTGGC 
    1021 AGGTTGTTTT GAATGGTAAA GTTGATGCAT TCTGTGGAGG CTCTATCGTT AATGAAAAAT 
    1081 GGATTGTAAC TGCTGCCCAC TGTGTTGAAA CTGGTGTTAA AATTACAGTT GTCGCAGGTG 
    1141 AACATAATAT TGAGGAGACA GAACATACAG AGCAAAAGCG AAATGTGATT CGAATTATTC 
    1201 CTCACCACAA CTACAATGCA GCTATTAATA AGTACAACCA TGACATTGCC CTTCTGGAAC 
    1261 TGGACGAACC CTTAGTGCTA AACAGCTACG TTACACCTAT TTGCATTGCT GACAAGGAAT 
    1321 ACACGAACAT CTTCCTCAAA TTTGGATCTG GCTATGTAAG TGGCTGGGGA AGAGTCTTCC 
    1381 ACAAAGGGAG ATCAGCTTTA GTTCTTCAGT ACCTTAGAGT TCCACTTGTT GACCGAGCCA 
    1441 CATGTCTTCG ATCTACAAAG TTCACCATCT ATAACAACAT GTTCTGTGCT GGCTTCCATG 
    1501 AAGGAGGTAG AGATTCATGT CAAGGAGATA GTGGGGGACC CCATGTTACT GAAGTGGAAG 
    1551 GGACCAGTTT CTTAACTGGA ATTATTAGCT GGGGTGAAGA GTGTGCAATG AAAGGCAAAT 
    1621 ATGGAATATA TACCAAGGTG TCCCGGTATG TCAACTGGAT TAAGGAAAAA ACAAAGCTCA 
    1681 CTGACAAAAC TCACACATGC CCACCGTGCC CAGCTCCGGA ACTCCTGGGC GGACCGTCAG 
    1741 TCTTCCTCTT CCCCCCAAAA CCCAAGGACA CCCTCATGAT CTCCCGGACC CCTGAGGTCA 
    1801 CATGCGTGGT GGTGGACGTG AGCCACGAAG ACCCTGAGGT CAAGTTCAAC TGGTACGTGG 
    1861 ACGGCGTGGA GGTGCATAAT GCCAAGACAA AGCCGCGGGA GGAGCAGTAC AACAGCACGT 
    1921 ACCGTGTGGT CAGCGTCCTC ACCGTCCTGC ACCAGGACTG GCTGAATGGC AAGGAGTACA 
    1981 AGTGCAAGGT CTCCAACAAA GCCCTCCCAG CCCCCATCGA GAAAACCATC TCCAAAGCCA 
    2041 AAGGGCAGCC CCGAGAACCA CAGGTGTACA CCCTGCCCCC ATCCCGGGAT GAGCTGACCA 
    2101 AGAACCAGGT CAGCCTGACC TGCCTGGTCA AAGGCTTCTA TCCCAGCGAC ATCGCCGTGG 
    2151 AGTGGGAGAG CAATGGGCAG CCGGAGAACA ACTACAAGAC CACGCCTCCC GTGTTGGACT 
    2221 CCGACGGCTC CTTCTTCCTC TACAGCAAGC TCACCGTGGA CAAGAGCAGG TGGCAGCAGG 
    2281 GGAACGTCTT CTCATGCTCC GTGATGCATG AGGCTCTGCA CAACCACTAC ACGCAGAAGA 
    2341 GCCTCTCCCT GTCTCCGGGT AAAGGTGGCG GCGGATCAGG TGGGGGTGGA TCAGGCGGTG 
    2401 GAGGTTCCGG TGGCGGGGGA TCAGACAAAA CTCACACATG CCCACCGTGC CCAGCACCTG 
    2461 AACTCCTGGG AGGACCGTCA GTCTTCCTCT TCCCCCCAAA ACCCAAGGAC ACCCTCATGA 
    2521 TCTCCCGGAC CCCTGAGGTC ACATGCGTGG TGGTGGACGT GAGCCACGAA GACCCTGAGG 
    2581 TCAAGTTCAA CTGGTACGTG GACGGCGTGG AGGTGCATAA TGCCAAGACA AAGCCGCGGG 
    2641 AGGAGCAGTA CAACAGCACG TACCGTGTGG TCAGCGTCCT CACCGTCCTG CACCAGGACT 
    2101 GGCTGAATGG CAAGGAGTAC AAGTGCAAGG TCTCCAACAA AGCCCTCCCA GCCCCCATCG 
    2751 AGAAAACCAT CTCCAAAGCC AAAGGGCAGC CCCGAGAACC ACAGGTGTAC ACCCTGCCCC 
    2821 CATCCCGCGA TGAGCTGACC AAGAACCAGG TCAGCCTGAC CTGCCTGGTC AAAGGCTTCT 
    2881 ATCCCAGCGA CATCGCCGTG GAGTGGGAGA GCAATGGGCA GCCGGAGAAC AACTACAAGA 
    2941 CCACGCCTCC CGTGTTGGAC TCCGACGGCT CCTTCTTCCT CTACAGCAAG CTCACCGTCG 
    3001 ACAAGAGCAG GTGGCAGCAG GGGAACGTCT TCTCATGCTC CGTGATGCAT GAGGCTCTGC 
    3061 ACAACCACTA CACGCAGAAG AGCCTCTCCC TGTCTCCGGG TAAAGGTGGC GGTGGCTCCG 
    3121 GCGGAGGTGG GTCCGGTGGC GGCGGATCAG GTGGGGGTGG ATCAGGCGGT GGAGGTTCCG 
    3181 GTGGCGGGGG ATCAGCGCAG GTGCAGCTGC AGGAGTCTGG GGGAGGCTTG GTACAGCCTG 
    3241 GGGGGTCCCT GAGACTCTCC TGTGCAGCCT CTGGATTCAT GTTTAGCAGG TATGCCATGA 
    3301 GCTGGGTCCG CCAGGCTCCA GGGAAGGGGC CAGAGTGGGT CTCAGGTATT AGTGGTAGTG 
    3361 GTGGTAGTAC ATACTACGCA GACTCCGTGA AGGGCCGGTT CACCGTCTCC AGAGACAATT 
    3421 CCAAGAACAC GCTGTATCTG CAAATGAACA GCCTGAGAGC CGAGGACACG GCTGTATATT 
    3481 ACTGCGCCCG GGGCGCCACC TACACCAGCC GGAGCGACGT GCCCGACCAG ACCAGCTTCG 
    3541 ACTACTGGGG CCAGGGAACC CTGGTCACCG TCTCCTCAGG GAGTGCATCC GCCCCAAAGC 
    3601 TTGAAGAAGG TGAATTTTCA GAAGCACGCG TATCTGAACT GACTCAGGAC CCTGCTGTGT 
    3661 CTGTGGCCTT GGGACAGACA GTCAGGATCA CATGCCAAGG AGACAGCCTC AGAAACTTTT 
    3721 ATGCAAGCTG GTACCAGCAG AAGCCAGGAC AGGCCCCTAC TCTTGTCATC TATGGTTTAA 
    3781 GTAAAAGGCC CTCAGGGATC CCAGACCGAT TCTCTGCCTC CAGCTCAGGA AACACAGCTT 
    3841 CCTTGACCAT CACTGGGGCT CAGGCGGAAG ATGAGGCTGA CTATTACTGC CTGCTGTACT 
    3901 ACGGCGGCGG CCAGCAGGGC GTGTTCGGCG GCGGCACCAA GCTGACCGTC CTACGTCAGC 
    3961 CCAAGGCTGC CCCCTCGGTC ACTCTGTTCC CGCCCTCTTC TGCGGCCTGA 
  • FIX-088 amino acid sequence. Signal sequence is shown in dotted underline, propeptide is double underlined, linker connecting both Fc regions is underlined and linker connecting the Fc region to SCE5 is in bold
  • Figure US20210355473A1-20211118-C00050
      61 ERECMEEKCS FEEAREVFEN TERTTEFWKQ YVDGDQCESN PCLNGGSCKD DINSYECWCP
     121 FGFEGKNCEL DVTCNIKNGR CEQFCKNSAD NKVVCSCTEG YRLAENQKSC EPAVPFPCGR
     161 VSVSQTSKLT RAETVFPDVD YVNSTEAETI LDNITQSTQS FNDFTRVVGG EDAKPGQFPW
     241 QVVLNGKVDA FCGGSIVNEK WIVTAAHCVE TGVKITVVAG EHNIEETEHT EQKRNVIRII
     301 PHHNYNAAIN KYNHDIALLE LDEPLVLNSY VTPICIADKE YTNIFLKFGS GYVSGWGRVF
     361 HKGRSALVLQ YLRVPLVDRA TCLRSTKFTI YNNMFCAGFH EGGRDSCQGD SGGPHVTEVE
     421 GTSFLTGIIS WGEECAMKGK YGIYTKVSRY VNWIKEKTKL TDKTHTCPPC PAPELLGGPS
     481 VFLFPPKPKD TLMISRTPEV TCVVVDVSHE DPEVKFNWYV DGVEVHNAKT KPREEQYNST
     541 YRVVSVLTVL HQDWLNGKEY KCKVSNKALP APIEKTISKA KGQPREPQVY TLPPSRDELT
     601 KNQVSLTCLV KGFYPSDIAV EWESNGQPEN NYKTTPPVLD SDGSFFLYSK LTVDKSRWQQ
     661 GNVFSCSVMH EALHNHYTQK SLSLSPGKGG GGSGGGGSGG GGSGGGGSDK THTCPPCPAP
     721 ELLGGPSVFL FPPKPKDTLM ISRTPEVTCV VVDVSHEDPE VKFNWYVDGV EVHNAKTKPR
     781 EEQYNSTYRV VSVLTVLHQD WLNGKEYKCK VSNKALPAPI EKTISKAKGQ PREPQVYTLP
     841 PSRDELTKNQ VSLTCLVKGF YPSDIAVEWE SNGQPENNYK TTPPVLDSDG SFFLYSKLTV
     901 DKSRWQQGNV FSCSVMHEAL HNHYTQKSLS LSPGKGGGGS GGGGSGGGGS GGGGSGGGGS
     961 GGGGSAQVQL QESGGGLVQP GGSLRLSCAA SGFMFSRYAM SWVRQAPGKG PEWVSGISGS
    1021 GGSTYYADSV KGRFTVSRDN SKNTLYLQMN SLRAEDTAVY YCARGATYTS RSDVPDQTSF
    1081 DYWGQGTLVT VSSGSASAPK LEEGEFSEAR VSELTQDPAV SVALGQTVRI TCQGDSLRNF
    1141 YASWYQQKPG QAPTLVIYGL SKRPSGIPDR FSASSSGNTA SLTITGAQAE DEADYYCLLY
    1201 YGGGQQGVFG GGTKLTVLRQ PKAAPSVTLF PPSSAA*
  • DNA sequence for FIX-089
       1 ATGCAGCGCG TGAACATGAT CATGGCAGAA TCACCAGGCC TCATCACCAT CTGCCTTTTA
      61 GGATATCTAC TCAGTGCTGA ATGTACAGGT TTGTTTCCTT TTTTAAAATA CATTGAGTAT
     121 GCTTGCCTTT TAGATATAGA AATATCTGAT GCTGTCTTCT TCACTAAATT TTGATTACAT
     181 GATTTGACAG CAATATTGAA GAGTCTAACA GCCAGCACGC AGGTTGGTAA GTACTGTGGG
     241 AACATCACAG ATTTTGGCTC CATGCCCTAA AGAGAAATTG GCTTTCAGAT TATTTGGATT
     301 AAAAACAAAG ACTTTCTTAA GAGATGTAAA ATTTTCATGA TGTTTTCTTT TTTGCTAAAA
     361 CTAAAGAATT ATTCTTTTAC ATTTCAGTTT TTCTTGATCA TGAAAACGCC AACAAAATTC
     421 TGAATCGGCC AAAGAGGTAT AATTCAGGTA AATTGGAAGA GTTTGTTCAA GGGAATCTAG
     481 AGAGAGAATG TATGGAAGAA AAGTGTAGTT TTGAAGAAGC ACGAGAAGTT TTTGAAAACA
     541 CTGAAAGAAC AACTGAATTT TGGAAGCAGT ATGTTGATGG AGATCAGTGT GAGTCCAATC
     601 CATGTTTAAA TGGCGGCAGT TGCAAGGATG ACATTAATTC CTATGAATGT TGGTGTCCCT
     661 TTGGATTTGA AGGAAAGAAC TGTGAATTAG ATGTAACATG TAACATTAAG AATGGCAGAT
     721 GCGAGCAGTT TTGTAAAAAT AGTGCTGATA ACAAGGTGGT TTGCTCCTGT ACTGAGGGAT
     781 ATCGACTTGC AGAAAACCAG AAGTCCTGTG AACCAGCAGT GCCATTTCCA TGTGGAAGAG
     841 TTTCTGTTTC ACAAACTTCT AAGCTCACCC GTGCTGAGAC TGTTTTTCCT GATGTGGACT
     901 ATGTAAATTC TACTGAAGCT GAAACCATTT TGGATAACAT CACTCAAAGC ACCCAATCAT
     961 TTAATGACTT CACTCGGGTT GTTGGTGGAG AAGATGCCAA ACCAGGTCAA TTCCCTTGGC
    1021 AGGTTGTTTT GAATGGTAAA GTTGATGCAT TCTGTGGAGG CTCTATCGTT AATGAAAAAT
    1081 GGATTGTAAC TGCTGCCCAC TGTGTTGAAA CTGGTGTTAA AATTACAGTT GTCGCAGGTG
    1141 AACATAATAT TGAGGAGACA GAACATACAG AGCAAAAGCG AAATGTGATT CGAATTATTC
    1201 CTCACCACAA CTACAATGCA GCTATTAATA AGTACAACCA TGACATTGCC CTTCTGGAAC
    1261 TGGACGAACC CTTAGTGCTA AACAGCTACG TTACACCTAT TTGCATTGCT GACAAGGAAT
    1321 ACACGAACAT CTTCCTCAAA TTTGGATCTG GCTATGTAAG TGGCTGGGGA AGAGTCTTCC
    1381 ACAAAGGGAG ATCAGCTTTA GTTCTTCAGT ACCTTAGAGT TCCACTTGTT GACCGAGCCA
    1441 CATGTCTTCG ATCTACAAAG TTCACCATCT ATAACAACAT GTTCTGTGCT GGCTTCCATG
    1501 AAGGAGGTAG AGATTCATGT CAAGGAGATA GTGGGGGACC CCATGTTACT GAAGTGGAAG
    1561 GGACCAGTTT CTTAACTGGA ATTATTAGCT GGGGTGAAGA GTGTGCAATG AAAGGCAAAT
    1621 ATGGAATATA TACCAAGGTG TCCCGGTATG TCAACTGGAT TAAGGAAAAA ACAAAGCTCA
    1681 CTGACAAAAC TCACACATGC CCACCGTGCC CAGCTCCGGA ACTCCTGGGA GGACCGTCAG
    1741 TCTTCCTCTT CCCCCCAAAA CCCAAGGACA CCCTCATGAT CTCCCGGACC CCTGAGGTCA
    1801 CATGCGTGGT GGTGGACGTG AGCCACGAAG ACCCTGAGGT CAAGTTCAAC TGGTACGTGG
    1861 ACGGCGTGGA GGTGCATAAT GCCAAGACAA AGCCGCGGGA GGAGCAGTAC AACAGCACGT
    1921 ACCGTGTGGT CAGCGTCCTC ACCGTCCTGC ACCAGGACTG GCTGAATGGC AAGGAGTACA
    1981 AGTGCAAGGT CTCCAACAAA GCCCTCCCAG CCCCCATCGA GAAAACCATC TCCAAAGCCA
    2041 AAGGGCAGCC CCGAGAACCA CAGGTGTACA CCCTGCCCCC ATCCCGGGAT GAGCTGACCA
    2101 AGAACCAGGT CAGCCTGACC TGCCTGGTCA AAGGCTTCTA TCCCAGCGAC ATCGCCGTGG
    2161 AGTGGGAGAG CAATGGGCAG CCGGAGAACA ACTACAAGAC CACGCCTCCC GTGTTGGACT
    2221 CCGACGGCTC CTTCTTCCTC TACAGCAAGC TCACCGTCGA CAAGAGCAGG TGGCAGCAGG
    2281 GGAACGTCTT CTCATGCTCC GTGATGCATG AGGCTCTGCA CAACCACTAC ACGCAGAAGA
    2341 GCCTCTCCCT GTCTCCGGGT AAAGGCGGTG GCGGTTCAGG TGGAGGAGGG TCAGGCGGTG
    2401 GTGGATCCGG CGGGGGCGGA TCCGGTGGCG GAGGGTCAGG CGGTGGCGGA TCAGCCTGCA
    2461 CCGAGCGGAT GGCCCTGCAC AACCTGTGCG GTGGCGGTGG CTCCGGCGGA GGTGGGTCCG
    2521 GTGGCGGCGG ATCAGGTGGG GGTGGATCAG GCGGTGGAGG TTCCGGTGGC GGGGGATCCG
    2581 ACAAAACTCA CACATGCCCA CCGTGCCCAG CACCGGAACT CCTGGGCGGA CCGTCAGTCT
    2641 TCCTCTTCCC CCCAAAACCC AAGGACACCC TCATGATCTC CCGGACCCCT GAGGTCACAT
    2701 GCGTGGTGGT GGACGTGAGC CACGAAGACC CTGAGGTCAA GTTCAACTGG TACGTGGACG
    2761 GCGTGGAGGT GCATAATGCC AAGACAAAGC CGCGGGAGGA GCAGTACAAC AGCACGTACC
    2821 GTGTGGTCAG CGTCCTCACC GTCCTGCACC AGGACTGGCT GAATGGCAAG GAGTACAAGT
    2881 GCAAGGTCTC CAACAAAGCC CTCCCAGCCC CCATCGAGAA AACCATCTCC AAAGCCAAAG
    2941 GGCAGCCCCG AGAACCACAG GTGTACACCC TGCCCCCATC CCGGGATGAG CTGACCAAGA
    3001 ACCAGGTCAG CCTGACCTGC CTGGTCAAAG GCTTCTATCC CAGCGACATC GCCGTGGAGT
    3061 GGGAGAGCAA TGGGCAGCCG GAGAACAACT ACAAGACCAC GCCTCCCGTG TTGGACTCCG
    3121 ACGGCTCCTT CTTCCTCTAC AGCAAGCTCA CCGTGGACAA GAGCAGGTGG CAGCAGGGGA
    3181 ACGTCTTCTC ATGCTCCGTG ATGCATGAGG CTCTGCACAA CCACTACACG CAGAAGAGCC
    3241 TCTCCCTGTC TCCGGGTAAA TGA
  • FIX-089 amino acid sequence. Signal sequence is shown in dotted underline, propeptide is double underlined, linker regions connecting OS1 to Fc regions are underlined, and OS1 peptide is italicized
  • Figure US20210355473A1-20211118-C00051
     61 ERECMEEKCS FEEAREVFEN TERTTEFWKQ YVDGDQCESN PCLNGGSCKD DINSYECWCP
    121 FGFEGKNCEL DVTCNIKNGR CEQFCKNSAD NKVVCSCTEG YRLAENQKSC EPAVPFPCGR
    181 VSVSQTSKLT RAETVFPDVD YVNSTEAETI LDNITQSTQS FNDFTRVVGG EDAKPGQFPW
    241 QVVLNGKVDA FCGGSIVNEK WIVTAAHCVE TGVKITVVAG EHNIEETEHT EQKRNVIRII
    301 PHHNYNAAIN KYNHDIALLE LDEPLVLNSY VTPICIADKE YTNIFLKFGS GYVSGWGRVF
    361 HKGRSALVLQ YLRVPLVDRA TCLRSTKFTI YNNMFCAGFH EGGRDSCQGD SGGPHVTEVE
    421 GTSFLTGIIS WGEECAMKGK YGIYTKVSRY VNWIKEKTKL TDKTHTCPPC PAPELLGGPS
    481 VFLFPPKPKD TLMISRTPEV TCVVVDVSHE DPEVKFNWYV DGVEVHNAKT KPREEQYNST
    541 YRVVSVLTVL HQDWLNGKEY KCKVSNKALP APIEKTISKA KGQPREPQVY TLPPSRDELT
    601 KNQVSLTCLV KGFYPSDIAV EWESNGQPEN NYKTTPPVLD SDGSFFLYSK LTVDKSRWQQ
    661 GNVFSCSVMH EALHNHYTQK SLSLSPGKGG GGSGGGGSGG GGSGGGGSGG GGSGGGGS AC
    721 TERMALHNLCGGGGSGGGGS GGGGSGGGGS GGGGSGGGGS DKTHTCPPCP APELLGGPSV
    781 FLFPPKPKDT LMISRTPEVT CVVVDVSHED PEVKFNWYVD GVEVHNAKTK PREEQYNSTY
    841 RVVSVLTVLH QDWLNGKEYK CKVSNKALPA PIEKTISKAK GQPREPQVYT LPPSRDELTK
    901 NQVSLTCLVK GFYPSDIAVE WESNGQPENN YKTTPPVLDS DGSFFLYSKL TVDKSRWQQG
    961 NVFSCSVMHE ALHNHYTQKS LSLSPGK*
  • DNA sequence for FIX-090 
       1 ATGCAGCGCG TGAACATGAT CATGGCAGAA TCACCAGGCC TCATCACCAT CTGCCTTTTA 
      61 GGATATCTAC TCAGTGCTGA ATGTACAGGT TTGTTTCCTT TTTTAAAATA CATTGAGTAT 
     121 GCTTGCCTTT TAGATATAGA AATATCTGAT GCTGTCTTCT TCACTAAATT TTGATTACAT 
     181 GATTTGACAG CAATATTGAA GAGTCTAACA GCCAGCACGC AGGTTGGTAA GTACTGTGGG 
     241 AACATCACAG ATTTTGGCTC CATGCCCTAA AGAGAAATTG GCTTTCAGAT TATTTGGATT 
     301 AAAAACAAAG ACTTTCTTAA GAGATGTAAA ATTTTCATGA TGTTTTCTTT TTTGCTAAAA 
     351 CTAAAGAATT ATTCTTTTAC ATTTCAGTTT TTCTTGATCA TGAAAACGCC AACAAAATTC 
     421 TGAATCGGCC AAAGAGGTAT AATTCAGGTA AATTGGAAGA GTTTGTTCAA GGGAATCTAG 
     481 AGAGAGAATG TATGGAAGAA AAGTGTAGTT TTGAAGAAGC ACGAGAAGTT TTTGAAAACA 
     541 CTGAAAGAAC AACTGAATTT TGGAAGCAGT ATGTTGATGG AGATCAGTGT GAGTCCAATC 
     601 CATGTTTAAA TGGCGGCAGT TGCAAGGATG ACATTAATTC CTATGAATGT TGGTGTCCCT 
     661 TTGGATTTGA AGGAAAGAAC TGTGAATTAG ATGTAACATG TAACATTAAG AATGGCAGAT 
     721 GCGAGCAGTT TTGTAAAAAT AGTGCTGATA ACAAGGTGGT TTGCTCCTGT ACTGAGGGAT 
     781 ATCGACTTGC AGAAAACCAG AAGTCCTGTG AACCAGCAGT GCCATTTCCA TGTGGAAGAG 
     841 TTTCTGTTTC ACAAACTTCT AAGCTCACCC GTGCTGAGAC TGTTTTTCCT GATGTGGACT 
     901 ATGTAAATTC TACTGAAGCT GAAACCATTT TGGATAACAT CACTCAAAGC ACCCAATCAT 
     961 TTAATGACTT CACTCGGGTT GTTGGTGGAG AAGATGCCAA ACCAGGTCAA TTCCCTTGGC 
     101 AGGTTGTTTT GAATGGTAAA GTTGATGCAT TCTGTGGAGG CTCTATCGTT AATGAAAAAT 
    1081 GGATTGTAAC TGCTGCCCAC TGTGTTGAAA CTGGTGTTAA AATTACAGTT GTCGCAGGTG 
    1141 AACATAATAT TGAGGAGACA GAACATACAG AGCAAAAGCG AAATGTGATT CGAATTATTC 
    1201 CTCACCACAA CTACAATGCA GCTATTAATA AGTACAACCA TGACATTGCC CTTCTGGAAC 
    1261 TGGACGAACC CTTAGTGCTA AACAGCTACG TTACACCTAT TTGCATTGCT GACAAGGAAT 
    1321 ACACGAACAT CTTCCTCAAA TTTGGATCTG GCTATGTAAG TGGCTGGGGA AGAGTCTTCC 
    1381 ACAAAGGGAG ATCAGCTTTA GTTCTTCAGT ACCTTAGAGT TCCACTTGTT GACCGAGCCA 
    1441 CATGTCTTCG ATCTACAAAG TTCACCATCT ATAACAACAT GTTCTGTGCT GGCTTCCATG 
    1501 AAGGAGGTAG AGATTCATGT CAAGGAGATA GTGGGGGACC CCATGTTACT GAAGTGGAAG 
    1561 GGACCAGTTT CTTAACTGGA ATTATTAGCT GGGGTGAAGA GTGTGCAATG AAAGGCAAAT 
    1621 ATGGAATATA TACCAAGGTG TCCCGGTATG TCAACTGGAT TAAGGAAAAA ACAAAGCTCA 
    1681 CTGGTGGCGG TGGCTCCGGC GGAGGTGGGT CCGGTGGCGG CGGATCAGGT GGGGGTGGAT 
    1741 CAGGCGGTGG AGGTTCCGGT GGCGGGGGAT CAGCGCAGGT GCAGCTGCAG GAGTCTGGGG 
    1801 GAGGCTTGGT ACAGCCTGGG GGGTCCCTGA GACTCTCCTG TGCAGCCTCT GGATTCATGT 
    1861 TTAGCAGGTA TGCCATGAGC TGGGTCCGCC AGGCTCCAGG GAAGGGGCCA GAGTGGGTCT 
    1921 CAGGTATTAG TGGTAGTGGT GGTAGTACAT ACTACGCAGA CTCCGTGAAG GGCCGGTTCA 
    1981 CCGTCTCCAG AGACAATTCC AAGAACACGC TGTATCTGCA AATGAACAGC CTGAGAGCCG 
    2041 AGGACACGGC TGTATATTAC TGCGCCCGGG GCGCCACCTA CACCAGCCGG AGCGACGTGC 
    2101 CCGACCAGAC CAGCTTCGAC TACTGGGGCC AGGGAACCCT GGTCACCGTC TCCTCAGGGA 
    2161 GTGCATCCGC CCCAAAGCTT GAAGAAGGTG AATTTTCAGA AGCACGCGTA TCTGAACTGA 
    2221 CTCAGGACCC TGCTGTGTCT GTGGCCTTGG GACAGACAGT CAGGATCACA TGCCAAGGAG 
    2251 ACAGCCTCAG AAACTTTTAT GCAAGCTGGT ACCAGCAGAA GCCAGGACAG GCCCCTACTC 
    2341 TTGTCATCTA TGGTTTAAGT AAAAGGCCCT CAGGGATCCC AGACCGATTC TCTGCCTCCA 
    2401 GCTCAGGAAA CACAGCTTCC TTGACCATCA CTGGGGCTCA GGCGGAAGAT GAGGCTGACT 
    2461 ATTACTGCCT GCTGTACTAC GGCGGCGGCC AGCAGGGCGT GTTCGGCGGC GGCACCAAGC 
    2521 TGACCGTCCT ACGTCAGCCC AAGGCTGCCC CCTCGGTCAC TCTGTTCCCG CCCTCTTCTG 
    2501 CGGCCTGA 
  • FIX-90 amino acid sequence. Signal sequence is shown in dotted underline, propeptide is double underlined, and linker regions connecting FIX to SCE5 is underlined
  • 1
    Figure US20210355473A1-20211118-C00052
    61 ERECMEEKCS FEEAREVFEN TERTTEFWKQ YVDGDQCESN PCLNGGSCKD DINSYECWCP
    121 FGFEGKNCEL DVTCNIKNGR CEQFCKNSAD NKVVCSCTEG YRLAENQKSC EPAVPFPCGR
    181 VSVSQTSKLT RAETVFPDVD YVNSTEAETI LDNITQSTQS FNDFTRVVGG EDAKPGQFPW
    241 QVVLNGKVDA FCGGSIVNEK WIVTAAHCVE TGVKITVVAG EHNIEETEHT EQKRNVIRII
    301 PHHNYNAAIN KYNHDIALLE LDEPLVLNSY VTPICIADKE YTNIFLKFGS GYVSGWGRVF
    351 HKGRSALVLQ YLRVPLVDRA TCLRSTKFTI YNNMFCAGFH EGGRDSCQGD SGGPHVTEVE
    421 GTSFLTGIIS WGEECAMKGK YGIYTKVSRY VNWIKEKTKL TGGGGSGGGG SGGGGSGGGG
    461 SGGGGSGGGG SAQVQLQESG GGLVQPGGSL RLSCAASGEM FSRYAMSWVR QAPGKGPEWV
    541 SGISGSGGST YYADSVKGRF TVSRDNSKNT LYLQMNSLRA EDTAVYYCAR GATYTSRSDV
    601 PDQTSFDYWG QGTLVTVSSG SASAPKLEEG EFSEARVSEL TQDPAVSVAL GQTVRITCQG
    661 DSLRNFYASW YQQKPGQAPT LVIYGLSKRP SGIPDRFSAS SSGNTASLTI TGAQAEDEAD
    721 YYCLLYYGGG QQGVFGGGTK LTVLRQPKAA PSVTLFPPSS AA*
  • DNA sequence for FVII-088 
       1 ATGGTCTCCC AGGCCCTCAG GCTCCTCTGC CTTCTGCTTG GGCTTCAGGG CTGCCTGGCT 
      61 GCAGTCTTCG TAACCCAGGA GGAAGCCCAC GGCGTCCTGC ACCGGCGCCG GCGCGCCAAC 
     121 GCGTTCCTGG AGGAGCTGCG GCCGGGCTCC CTGGAGAGGG AGTGCAAGGA GGAGCAGTGC 
     181 TCCTTCGAGG AGGCCCGGGA GATCTTCAAG GACGCGGAGA GGACGAAGCT GTTCTGGATT 
     241 TCTTACAGTG ATGGGGACCA GTGTGCCTCA AGTCCATGCC AGAATGGGGG CTCCTGCAAG 
     301 GACCAGCTCC AGTCCTATAT CTGCTTCTGC CTCCCTGCCT TCGAGGGCCG GAACTGTGAG 
     361 ACGCACAAGG ATGACCAGCT GATCTGTGTG AACGAGAACG GCGGCTGTGA GCAGTACTGC 
     421 AGTGACCACA CGGGCACCAA GCGCTCCTGT CGGTGCCACG AGGGGTACTC TCTGCTGGCA 
     481 GACGGGGTGT CCTGCACACC CACAGTTGAA TATCCATGTG GAAAAATACC TATTCTAGAA 
     541 AAAAGAAATG CCAGCAAACC CCAAGGCCGA ATTGTGGGGG GCAAGGTGTG CCCCAAAGGG 
     601 GAGTGTCCAT GGCAGGTCCT GTTGTTGGTG AATGGAGCTC AGTTGTGTGG GGGGACCCTG 
     661 ATCAACACCA TCTGGGTGGT CTCCGCGGCC CACTGTTTCG ACAAAATCAA GAACTGGAGG 
     721 AACCTGATCG CGGTGCTGGG CGAGCACGAC CTCAGCGAGC ACGACGGGGA TGAGCAGAGC 
     181 CGGCGGGTGG CGCAGGTCAT CATCCCCAGC ACGTACGTCC CGGGCACCAC CAACCACGAC 
     841 ATCGCGCTGC TCCGCCTGCA CCAGCCCGTG GTCCTCACTG ACCATGTGGT GCCCCTCTGC 
     901 CTGCCCGAAC GGACGTTCTC TGAGAGGACG CTGGCCTTCG TGCGCTTCTC ATTGGTCAGC 
     961 GGCTGGGGCC AGCTGCTGGA CCGTGGCGCC ACGGCCCTGG AGCTCATGGT CCTCAACGTG 
    1021 CCCCGGCTGA TGACCCAGGA CTGCCTGCAG CAGTCACGGA AGGTGGGAGA CTCCCCAAAT 
    1081 ATCACGGAGT ACATGTTCTG TGCCGGCTAC TCGGATGGCA GCAAGGACTC CTGCAAGGGG 
    1141 GACAGTGGAG GCCCACATGC CACCCACTAC CGGGGCACGT GGTACCTGAC GGGCATCGTC 
    1201 AGCTGGGGCC AGGGCTGCGC AACCGTGGGC CACTTTGGGG TGTACACCAG GGTCTCCCAG 
    1261 TACATCGAGT GGCTGCAAAA GCTCATGCGC TCAGAGCCAC GCCCAGGAGT CCTCCTGCGA 
    1321 GCCCCATTTC CCGGTGGCGG TGGCTCCGGC GGAGGTGGGT CCGGTGGCGG CGGATCAGGT 
    1381 GGGGGTGGAT CAGGCGGTGG AGGTTCCGGT GGCGGGGGAT CCGACAAAAC TCACACATGC 
    1441 CCACCGTGCC CAGCTCCGGA ACTCCTGGGA GGACCGTCAG TCTTCCTCTT CCCCCCAAAA 
    1501 CCCAAGGACA CCCTCATGAT CTCCCGGACC CCTGAGGTCA CATGCGTGGT GGTGGACGTG 
    1561 AGCCACGAAG ACCCTGAGGT CAAGTTCAAC TGGTACGTGG ACGGCGTGGA GGTGCATAAT 
    1621 GCCAAGACAA AGCCGCGGGA GGAGCAGTAC AACAGCACGT ACCGTGTGGT CAGCGTCCTC 
    1681 ACCGTCCTGC ACCAGGACTG GCTGAATGGC AAGGAGTACA AGTGCAAGGT CTCCAACAAA 
    1741 GCCCTCCCAG CCCCCATCGA GAAAACCATC TCCAAAGCCA AAGGGCAGCC CCGAGAACCA 
    1801 CAGGTGTACA CCCTGCCCCC ATCCCGGGAT GAGCTGACCA AGAACCAGGT CAGCCTGACC 
    1851 TGCCTGGTCA AAGGCTTCTA TCCCAGCGAC ATCGCCGTGG AGTGGGAGAG CAATGGGCAG 
    1921 CCGGAGAACA ACTACAAGAC CACGCCTCCC GTGTTGGACT CCGACGGCTC CTTCTTCCTC 
    1961 TACAGCAAGC TCACCGTCGA CAAGAGCAGG TGGCAGCAGG GGAACGTCTT CTCATGCTCC 
    2041 GTGATGCATG AGGCTCTGCA CAACCACTAC ACGCAGAAGA GCCTCTCCCT GTCTCCGGGT 
    2101 AAACGGCGCC GCCGGAGCGG TGGCGGCGGA TCAGGTGGGG GTGGATCAGG CGGTGGAGGT 
    2161 TCCGGTGGCG GGGGATCCGG CGGTGGAGGT TCCGGTGGGG GTGGATCAAG GAAGAGGAGG 
    2221 AAGAGGGACA TCGTGATGAC CCAGGCCGCC CCCAGCGTGC CCGTGACCCC CGGCGAGAGC 
    2291 GTGAGCATCA GCTGCCGGAG CAGCCGGAGC CTGCTGCACA GCAACGGCAA CACCTACCTG 
    2341 TGCTGGTTCC TGCAGCGGCC CGGCCAGAGC CCCCAGCTGC TGATCTACCG GATGAGCAAC 
    2401 CTGGCCAGCG GCGTGCCCGA CCGGTTCAGC GGCAGCGGCA GCGGCACCGC CTTCACCCTG 
    2451 CGGATCAGCC GGGTGGAGGC CGAGGACGTG GGCGTGTACT ACTGCATGCA GCACCTGGAG 
    2521 TACCCCTTCA CCTTCGGCAG CGGCACCAAG CTGGAGATCA AGCGGGGCGG CGGCGGCAGC 
    2561 GGCGGCGGCG GCAGCGGCGG CGGCGGCAGC CAGGTGCAGC TGCAGCAGAG CGGCGCCGAG 
    2641 CTGGTGCGGC CCGGCACCAG CGTGAAGATC AGCTGCAAGG CCAGCGGCTA CACCTTCACC 
    2701 AACTACTGGC TGGGCTGGGT GAAGCAGCGG CCCGGCCACG GCCTGGAGTG GATCGGCGAC 
    2761 ATCTACCCCG GCGGCGGCTA CAACAAGTAC AACGAGAACT TCAAGGGCAA GGCCACCCTG 
    2821 ACCGCCGACA CCAGCAGCAG CACCGCCTAC ATGCAGCTGA GCAGCCTGAC CAGCGAGGAC 
    2881 AGCGCCGTGT ACTTCTGCGC CCGGGAGTAC GGCAACTACG ACTACGCCAT GGACAGCTGG 
    2941 GGCCAGGGCA CCAGCGTGAC CGTGAGCAGC GGTGGCGGTG GCTCCGGCGG AGGTGGGTCC 
    3001 GGTGGCGGCG GATCAGGTGG GGGTGGATCA GGCGGTGGAG GTTCCGGTGG CGGGGGATCA 
    3051 GACAAAACTC ACACATGCCC ACCGTGCCCA GCACCGGAAC TCCTGGGCGG ACCGTCAGTC 
    3121 TTCCTCTTCC CCCCAAAACC CAAGGACACC CTCATGATCT CCCGGACCCC TGAGGTCACA 
    3161 TGCGTGGTGG TGGACGTGAG CCACGAAGAC CCTGAGGTCA AGTTCAACTG GTACGTGGAC 
    3241 GGCGTGGAGG TGCATAATGC CAAGACAAAG CCGCGGGAGG AGCAGTACAA CAGCACGTAC 
    3301 CGTGTGGTCA GCGTCCTCAC CGTCCTGCAC CAGGACTGGC TGAATGGCAA GGAGTACAAG 
    3351 TGCAAGGTCT CCAACAAAGC CCTCCCAGCC CCCATCGAGA AAACCATCTC CAAAGCCAAA 
    3421 GGGCAGCCCC GAGAACCACA GGTGTACACC CTGCCCCCAT CCCGGGATGA GCTGACCAAG 
    3481 AACCAGGTCA GCCTGACCTG CCTGGTCAAA GGCTTCTATC CCAGCGACAT CGCCGTGGAG 
    3541 TGGGAGAGCA ATGGGCAGCC GGAGAACAAC TACAAGACCA CGCCTCCCGT GTTGGACTCC 
    3601 GACGGCTCCT TCTTCCTCTA CAGCAAGCTC ACCGTGGACA AGAGCAGGTG GCAGCAGGGG 
    3661 AACGTCTTCT CATGCTCCGT GATGCATGAG GCTCTGCACA ACCACTACAC GCAGAAGAGC 
    3721 CTCTCCCTGT CTCCGGGTAA ATGA 
  • FVII-088 amino acid sequence. Signal sequence is shown in dotted underline, propeptide is double underlined, linker region connecting FVII or AP3 to Fc region is underlined, the AP3 scFv italicized, and linker with proprotein convertase processing sites is shown in bold
  • Figure US20210355473A1-20211118-C00053
      61 SFEEAREIFK DAERTKLFWI SYSDGDQCAS SPCQNGGSCK DQLQSYICFC LPAFEGRNCE
     121 THKDDQLICV NENGGCEQYC SDHTGTKRSC RCHEGYSLLA DGVSCTPTVE YPCGKIPILE
     181 KRNASKPQGR IVGGKVCPKG ECPWQVLLLV NGAQLCGGTL INTIWVVSAA HCFDKIKNWR
     241 NLIAVLGEHD LSEHDGDEQS RRVAQVIIPS TYVPGTTNHD IALLRLHQPV VLTDHVVPLC
     301 LPERTFSERT LAFVRFSLVS GWGQLLDRGA TALELMVLNV PRLMTQDCLQ QSRKVGDSPN
     361 ITEYMFCAGY SDGSKDSCKG DSGGPHATHY RGTWYLTGIV SWGQGCATVG HFGVYTRVSQ
     421 YIEWLQKLMR SEPRPGVLLR APFPGGGGSG GGGSGGGGSG GGGSGGGGSG GGGSDKTHTC
     481 PPCPAPELLG GPSVFLFPPK PKDTLMISRT PEVTCVVVDV SHEDPEVKFN WYVDGVEVHN
     541 AKTKPREEQY NSTYRVVSVL TVLHQDWLNG KEYKCKVSNK ALPAPIEKTI SKAKGQPREP
     601 QVYTLPPSRD ELTKNQVSLT CLVKGFYPSD IAVEWESNGQ PENNYKTTPP VLDSDGSFFL
     661 YSKLTVDKSR WQQGNVFSCS VMHEALHNHY TQKSLSLSPG KRRRRSGGGG SGGGGSGGGG
     721 SGGGGSGGGG SGGGGSRKRR KR DIVMTQAA PSVPVTPGES VSISCRSSRS LLHSNGNTYL
     781 CWFLQRPGQS PQLLIYRMSN LASGVPDRFS GSGSGTAFTL RISRVEAEDV GVYYCMQHLE
     841 YPFTFGSGTK LEIKRGGGGS GGGGSGGGGS QVQLQQSGAE LVRPGTSVKI SCRASGYTFT
     901 NYWLGWVKQR PGHGLEWIGD TYPGGGYNKY NENFKGRATL TADTSSSTAY MQLSSLTSED
     961 SAVYFCAREY GNYDYAMDSW GQGTSVTVSSGGGGSGGGGS GGGGSGGGGS GGGGSGGGGS
    1021 DKTHTCPPCP APELLGGPSV FLFPPKPKDT LMISRTPEVT CVVVDVSHED PEVKFNWYVD
    1081 GVEVHNAKTK PREEQYNSTY RVVSVLTVLH QDWLNGKEYK CKVSNKALPA PIEKTISKAK
    1141 GQPREPQVYT LPPSRDELTK NQVSLTCLVK GFYPSDIAVE WESNGQPENN YKTTPPVLDS
    1201 DGSFFLYSKL TVDKSRWQQG NVFSCSVMHE ALHNHYTQKS LSLSPGK*
  • DNA sequence for FVIII-041
       1 ATGCAAATAG AGCTCTCCAC CTGCTTCTTT CTGTGCCTTT TGCGATTCTG CTTTAGTGCC
      61 ACCAGAAGAT ACTACCTGGG TGCAGTGGAA CTGTCATGGG ACTATATGCA AAGTGATCTC
     121 GGTGAGCTGC CTGTGGACGC AAGATTTCCT CCTAGAGTGC CAAAATCTTT TCCATTCAAC
     181 ACCTCAGTCG TGTACAAAAA GACTCTGTTT GTAGAATTCA CGGATCACCT TTTCAACATC
     241 GCTAAGCCAA GGCCACCCTG GATGGGTCTG CTAGGTCCTA CCATCCAGGC TGAGGTTTAT
     301 GATACAGTGG TCATTACACT TAAGAACATG GCTTCCCATC CTGTCAGTCT TCATGCTGTT
     361 GGTGTATCCT ACTGGAAAGC TTCTGAGGGA GCTGAATATG ATGATCAGAC CAGTCAAAGG
     421 GAGAAAGAAG ATGATAAAGT CTTCCCTGGT GGAAGCCATA CATATGTCTG GCAGGTCCTG
     481 AAAGAGAATG GTCCAATGGC CTCTGACCCA CTGTGCCTTA CCTACTCATA TCTTTCTCAT
     541 GTGGACCTGG TAAAAGACTT GAATTCAGGC CTCATTGGAG CCCTACTAGT ATGTAGAGAA
     601 GGGAGTCTGG CCAAGGAAAA GACACAGACC TTGCACAAAT TTATACTACT TTTTGCTGTA
     661 TTTGATGAAG GGAAAAGTTG GCACTCAGAA ACAAAGAACT CCTTGATGCA GGATAGGGAT
     721 GCTGCATCTG CTCGGGCCTG GCCTAAAATG CACACAGTCA ATGGTTATGT AAACAGGTCT
     781 CTGCCAGGTC TGATTGGATG CCACAGGAAA TCAGTCTATT GGCATGTGAT TGGAATGGGC
     841 ACCACTCCTG AAGTGCACTC AATATTCCTC GAAGGTCACA CATTTCTTGT GAGGAACCAT
     901 CGCCAGGCGT CCTTGGAAAT CTCGCCAATA ACTTTCCTTA CTGCTCAAAC ACTCTTGATG
     961 GACCTTGGAC AGTTTCTACT GTTTTGTCAT ATCTCTTCCC ACCAACATGA TGGCATGGAA
    1021 GCTTATGTCA AAGTAGACAG CTGTCCAGAG GAACCCCAAC TACGAATGAA AAATAATGAA
    1081 GAAGCGGAAG ACTATGATGA TGATCTTACT GATTCTGAAA TGGATGTGGT CAGGTTTGAT
    1141 GATGACAACT CTCCTTCCTT TATCCAAATT CGCTCAGTTG CCAAGAAGCA TCCTAAAACT
    1201 TGGGTACATT ACATTGCTGC TGAAGAGGAG GACTGGGACT ATGCTCCCTT AGTCCTCGCC
    1261 CCCGATGACA GAAGTTATAA AAGTCAATAT TTGAACAATG GCCCTCAGCG GATTGGTAGG
    1321 AAGTACAAAA AAGTCCGATT TATGGCATAC ACAGATGAAA CCTTTAAGAC TCGTGAAGCT
    1381 ATTCAGCATG AATCAGGAAT CTTGGGACCT TTACTTTATG GGGAAGTTGG AGACACACTG
    1441 TTGATTATAT TTAAGAATCA AGCAAGCAGA CCATATAACA TCTACCCTCA CGGAATCACT
    1501 GATGTCCGTC CTTTGTATTC AAGGAGATTA CCAAAAGGTG TAAAACATTT GAAGGATTTT
    1561 CCAATTCTGC CAGGAGAAAT ATTCAAATAT AAATGGACAG TGACTGTAGA AGATGGGCCA
    1621 ACTAAATCAG ATCCTCGGTG CCTGACCCGC TATTACTCTA GTTTCGTTAA TATGGAGAGA
    1681 GATCTAGCTT CAGGACTCAT TGGCCCTCTC CTCATCTGCT ACAAAGAATC TGTAGATCAA
    1741 AGAGGAAACC AGATAATGTC AGACAAGAGG AATGTCATCC TGTTTTCTGT ATTTGATGAG
    1801 AACCGAAGCT GGTACCTCAC AGAGAATATA CAACGCTTTC TCCCCAATCC AGCTGGAGTG
    1861 CAGCTTGAGG ATCCAGAGTT CCAAGCCTCC AACATCATGC ACAGCATCAA TGGCTATGTT
    1921 TTTGATAGTT TGCAGTTGTC AGTTTGTTTG CATGAGGTGG CATACTGGTA CATTCTAAGC
    1981 ATTGGAGCAC AGACTGACTT CCTTTCTGTC TTCTTCTCTG GATATACCTT CAAACACAAA
    2041 ATGGTCTATG AAGACACACT CACCCTATTC CCATTCTCAG GAGAAACTGT CTTCATGTCG
    2101 ATGGAAAACC CAGGTCTATG GATTCTGGGG TGCCACAACT CAGACTTTCG GAACAGAGGC
    2161 ATGACCGCCT TACTGAAGGT TTCTAGTTGT GACAAGAACA CTGGTGATTA TTACGAGGAC
    2221 AGTTATGAAG ATATTTCAGC ATACTTGCTG AGTAAAAACA ATGCCATTGA ACCAAGAAGC
    2281 TTCTCTCAAA ACCCACCAGT CTTGAAACGC CATCAACGGG AAATAACTCG TACTACTCTT
    2341 CAGTCAGATC AAGAGGAAAT TGACTATGAT GATACCATAT CAGTTGAAAT GAAGAAGGAA
    2401 GATTTTGACA TTTATGATGA GGATGAAAAT CAGAGCCCCC GCAGCTTTCA AAAGAAAACA
    2461 CGACACTATT TTATTGCTGC AGTGGAGAGG CTCTGGGATT ATGGGATGAG TAGCTCCCCA
    2521 CATGTTCTAA GAAACAGGGC TCAGAGTGGC AGTGTCCCTC AGTTCAAGAA AGTTGTTTTC
    2581 CAGGAATTTA CTGATGGCTC CTTTACTCAG CCCTTATACC GTGGAGAACT AAATGAACAT
    2641 TTGGGACTCC TGGGGCCATA TATAAGAGCA GAAGTTGAAG ATAATATCAT GGTAACTTTC
    2701 AGAAATCAGG CCTCTCGTCC CTATTCCTTC TATTCTAGCC TTATTTCTTA TGAGGAAGAT
    2761 CAGAGGCAAG GAGCAGAACC TAGAAAAAAC TTTGTCAAGC CTAATGAAAC CAAAACTTAC
    2821 TTTTGGAAAG TGCAACATCA TATGGCACCC ACTAAAGATG AGTTTGACTG CAAAGCCTGG
    2881 GCTTATTTCT CTGATGTTGA CCTGGAAAAA GATGTGCACT CAGGCCTGAT TGGACCCCTT
    2941 CTGGTCTGCC ACACTAACAC ACTGAACCCT GCTCATGGGA GACAAGTGAC AGTACAGGAA
    3001 TTTGCTCTGT TTTTCACCAT CTTTGATGAG ACCAAAAGCT GGTACTTCAC TGAAAATATG
    3061 GAAAGAAACT GCAGGGCTCC CTGCAATATC CAGATGGAAG ATCCCACTTT TAAAGAGAAT
    3121 TATCGCTTCC ATGCAATCAA TGGCTACATA ATGGATACAC TACCTGGCTT AGTAATGGCT
    3181 CAGGATCAAA GGATTCGATG GTATCTGCTC AGCATGGGCA GCAATGAAAA CATCCATTCT
    3241 ATTCATTTCA GTGGACATGT GTTCACTGTA CGAAAAAAAG AGGAGTATAA AATGGCACTG
    3301 TACAATCTCT ATCCAGGTGT TTTTGAGACA GTGGAAATGT TACCATCCAA AGCTGGAATT
    3361 TGGCGGGTGG AATGCCTTAT TGGCGAGCAT CTACATGCTG GGATGAGCAC ACTTTTTCTG
    3421 GTGTACAGCA ATAAGTGTCA GACTCCCCTG GGAATGGCTT CTGGACACAT TAGAGATTTT
    3481 CAGATTACAG CTTCAGGACA ATATGGACAG TGGGCCCCAA AGCTGGCCAG ACTTCATTAT
    3541 TCCGGATCAA TCAATGCCTG GAGCACCAAG GAGCCCTTTT CTTGGATCAA GGTGGATCTG
    3601 TTGGCACCAA TGATTATTCA CGGCATCAAG ACCCAGGGTG CCCGTCAGAA GTTCTCCAGC
    3661 CTCTACATCT CTCAGTTTAT CATCATGTAT AGTCTTGATG GGAAGAAGTG GCAGACTTAT
    3721 CGAGGAAATT CCACTGGAAC CTTAATGGTC TTCTTTGGCA ATGTGGATTC ATCTGGGATA
    3781 AAACACAATA TTTTTAACCC TCCAATTATT GCTCGATACA TCCGTTTGCA CCCAACTCAT
    3841 TATAGCATTC GCAGCACTCT TCGCATGGAG TTGATGGGCT GTGATTTAAA TAGTTGCAGC
    3901 ATGCCATTGG GAATGGAGAG TAAAGCAATA TCAGATGCAC AGATTACTGC TTCATCCTAC
    3961 TTTACCAATA TGTTTGCCAC CTGGTCTCCT TCAAAAGCTC GACTTCACCT CCAAGGGAGG
    4021 AGTAATGCCT GGAGACCTCA GGTGAATAAT CCAAAAGAGT GGCTGCAAGT GGACTTCCAG
    4081 AAGACAATGA AAGTCACAGG AGTAACTACT CAGGGAGTAA AATCTCTGCT TACCAGCATG
    4141 TATGTGAAGG AGTTCCTCAT CTCCAGCAGT CAAGATGGCC ATCAGTGGAC TCTCTTTTTT
    4201 CAGAATGGCA AAGTAAAGGT TTTTCAGGGA AATCAAGACT CCTTCACACC TGTGGTGAAC
    4261 TCTCTAGACC CACCGTTACT GACTCGCTAC CTTCGAATTC ACCCCCAGAG TTGGGTGCAC
    4321 CAGATTGCCC TGAGGATGGA GGTTCTGGGC TGCGAGGCAC AGGACCTCTA CGACAAAACT
    4381 CACACATGCC CACCGTGCCC AGCTCCAGAA CTCCTGGGCG GACCGTCAGT CTTCCTCTTC
    4441 CCCCCAAAAC CCAAGGACAC CCTCATGATC TCCCGGACCC CTGAGGTCAC ATGCGTGGTG
    4501 GTGGACGTGA GCCACGAAGA CCCTGAGGTC AAGTTCAACT GGTACGTGGA CGGCGTGGAG
    4561 GTGCATAATG CCAAGACAAA GCCGCGGGAG GAGCAGTACA ACAGCACGTA CCGTGTGGTC
    4621 AGCGTCCTCA CCGTCCTGCA CCAGGACTGG CTGAATGGCA AGGAGTACAA GTGCAAGGTC
    4681 TCCAACAAAG CCCTCCCAGC CCCCATCGAG AAAACCATCT CCAAAGCCAA AGGGCAGCCC
    4741 CGAGAACCAC AGGTGTACAC CCTGCCCCCA TCCCGGGATG AGCTGACCAA GAACCAGGTC
    4801 AGCCTGACCT GCCTGGTCAA AGGCTTCTAT CCCAGCGACA TCGCCGTGGA GTGGGAGAGC
    4861 AATGGGCAGC CGGAGAACAA CTACAAGACC ACGCCTCCCG TGTTGGACTC CGACGGCTCC
    4921 TTCTTCCTCT ACAGCAAGCT CACCGTGGAC AAGAGCAGGT GGCAGCAGGG GAACGTCTTC
    4981 TCATGCTCCG TGATGCATGA GGCTCTGCAC AACCACTACA CGCAGAAGAG CCTCTCCCTG
    5041 TCTCCGGGTA AAGGTGGCGG CGGATCAGGT GGGGGTGGAT CAGGCGGTGG AGGTTCCGGT
    5101 GGCGGGGGAT CAGACAAAAC TCACACATGC CCACCGTGCC CAGCACCTGA ACTCCTGGGA
    5161 GGACCGTCAG TCTTCCTCTT CCCCCCAAAA CCCAAGGACA CCCTCATGAT CTCCCGGACC
    5221 CCTGAGGTCA CATGCGTGGT GGTGGACGTG AGCCACGAAG ACCCTGAGGT CAAGTTCAAC
    5281 TGGTACGTGG ACGGCGTGGA GGTGCATAAT GCCAAGACAA AGCCGCGGGA GGAGCAGTAC
    5341 AACAGCACGT ACCGTGTGGT CAGCGTCCTC ACCGTCCTGC ACCAGGACTG GCTGAATGGC
    5401 AAGGAGTACA AGTGCAAGGT CTCCAACAAA GCCCTCCCAG CCCCCATCGA GAAAACCATC
    5461 TCCAAAGCCA AAGGGCAGCC CCGAGAACCA CAGGTGTACA CCCTGCCCCC TCCCGCGAT
    5521 GAGCTGACCA AGAACCAGGT CAGCCTGACC TGCCTGGTCA AAGGCTTCTA TCCCAGCGAC
    5581 ATCGCCGTGG AGTGGGAGAG CAATGGGCAG CCGGAGAACA ACTACAAGAC CACGCCTCCC
    5641 GTGTTGGACT CCGACGGCTC CTTCTTCCTC TACAGCAAGC TCACCGTGGA CAAGAGCAGG
    5701 TGGCAGCAGG GGAACGTCTT CTCATGCTCC GTGATGCATG AGGCTCTGCA CAACCACTAC
    5761 ACGCAGAAGA GCCTCTCCCT GTCTCCGGGT AAATGA
  • FVIII-041 amino acid sequence. Signal sequence is shown in dotted underline, and linker region connecting the Fc regions is underlined
  • Figure US20210355473A1-20211118-C00054
      61 TSVVYKKTLF VEFTDHLFNI AKPRPPWMGL LGPTIQAEVY DTVVITLKNM ASHPVSLHAV
     121 GVSYWKASEG AEYDDQTSQR EKEDDKVFPG GSHTYVWQVL KENGPMASDP LCLTYSYLSH
     181 VDLVKDLNSG LIGALLVCRE GSLAKEKTQT LHKFILLFAV FDEGKSWHSE TKNSLMQDRD
     241 AASARAWPKM HTVNGYVNRS LPGLIGCHRK SVYWHVIGMG TTPEVHSIFL EGHTFLVRNH
     301 RQASLEISPI TFLTAQTLLM DLGQFLLFCH ISSHQHDGME AYVKVDSCPE EPQLRMKNNE
     361 EAEDYDDDLT DSEMDVVRFD DDNSPSFIQI RSVAKKHPKT WVHYIAAEEE DWDYAPLVLA
     421 PDDRSYKSQY LNNGPQRIGR KYKKVREMAY TDETFKTREA IQHESGILGP LLYGEVGDTL
     481 LIIFKNQASR PYNIYPHGIT DVRPLYSRRL PKGVKHLKDF PILPGEIFKY KWTVTVEDGP
     541 TKSDPRCLTR YYSSFVNMER DLASGLIGPL LICYKESVDQ RGNQIMSDKR NVILFSVFDE
     601 NRSWYLTENI QRFLPNPAGV QLEDPEFQAS NIMHSINGYV FDSLQLSVCL HEVAYWYILS
     661 IGAQTDFLSV FFSGYTFKHK MVYEDTLTLF PFSGETVFMS MENPGLWILG CHNSDFRNRG
     721 MTALLKVSSC DKNTGDYYED SYEDISAYLL SKNNAIEPRS FSQNPPVLKR HQREITRTTL
     781 QSDQEEIDYD DTISVEMKKE DFDIYDEDEN QSPRSFQKKT RHYFIAAVER LWDYGMSSSP
     841 HVLRNRAQSG SVPQFKKVVF QEFTDGSFTQ PLYRGELNEH LGLLGPYIRA EVEDNIMVTF
     901 RNQASRPYSF YSSLISYEED QRQGAEPRKN FVKPNETKTY FWKVQHHMAP TKDEFDCKAW
     961 AYFSDVDLEK DVHSGLIGPL LVCHTNTLNP AHGRQVTVQE FALFFTIFDE TKSWYFTENM
    1021 ERNCRAPCNI QMEDPTFKEN YRFHAINGYI MDTLPGLVMA QDQRIRWYLL SMGSNENIHS
    1081 IHFSGHVFTV RKKEEYKMAL YNLYPGVFET VEMLPSKAGI WRVECLIGEH LHAGMSTLFL
    1141 VYSNKCQTPL GMASGHIRDF QITASGQYGQ WAPKLARLHY SGSINAWSTK EPFSWIKVDL
    1201 LAPMIIHGIK TQGARQKFSS LYISQFIIMY SLDGKKWQTY RGNSTGTLMV FFGNVDSSGI
    1261 KHNIFNPPII ARYIRLHPTH YSIRSTLRME LMGCDLNSCS MPLGMESKAI SDAQITASSY
    1321 FTNMFATWSP SKARLHLQGR SNAWRPQVNN PKEWLQVDFQ KTMKVTGVTT QGVKSLLTSM
    1381 YVKEFLISSS QDGHQWTLFF QNGKVKVFQG NQDSFTPVVN SLDPPLLTRY LRIHPQSWVH
    1441 QIALRMEVLG CEAQDLYDKT HTCPPCPAPE LLGGPSVFLF PPKPKDTLMI SRTPEVTCVV
    1501 VDVSHEDPEV KFNWYVDGVE VHNAKTKPRE EQYNSTYRVV SVLTVLHQDW LNGKEYKCKV
    1561 SNKALPAPIE KTISKAKGQP REPQVYTLPP SRDELTKNQV SLTCLVKGFY PSDIAVEWES
    1621 NGQPENNYKT TPPVLDSDGS FFLYSKLTVD KSRWQQGNVF SCSVMHEALH NHYTQKSLSL
    1681 SPGKGGGGSG GGGSGGGGSG GGGSDKTHTC PPCPAPELLG GPSVFLFPPK PKDTLMISRT
    1741 PEVTCVVVDV SHEDPEVKFN WYVDGVEVHN AKTKPREEQY NSTYRVVSVL TVLHQDWLNG
    1801 KEYKCKVSNK ALPAPIEKTI SKAKGQPREP QVYTLPPSRD ELTKNQVSLT CLVKGFYPSD
    1861 IAVEWESNGQ PENNYKTTPP VLDSDGSFFL YSKLTVDKSR WQQGNVFSCS VMHEALHNHY
    1921 TQKSLSLSPG K*
  • DNA sequence for FVIII-108
       1 ATGCAAATAG AGCTCTCCAC CTGCTTCTTT CTGTGCCTTT TGCGATTCTG CTTTAGTGCC
      61 ACCAGAAGAT ACTACCTGGG TGCAGTGGAA CTGTCATGGG ACTATATGCA AAGTGATCTC
     121 GGTGAGCTGC CTGTGGACGC AAGATTTCCT CCTAGAGTGC CAAAATCTTT TCCATTCAAC
     181 ACCTCAGTCG TGTACAAAAA GACTCTGTTT GTAGAATTCA CGGATCACCT TTTCAACATC
     241 GCTAAGCCAA GGCCACCCTG GATGGGTCTG CTAGGTCCTA CCATCCAGGC TGAGGTTTAT
     301 GATACAGTGG TCATTACACT TAAGAACATG GCTTCCCATC CTGTCAGTCT TCATGCTGTT
     361 GGTGTATCCT ACTGGAAAGC TTCTGAGGGA GCTGAATATG ATGATCAGAC CAGTCAAAGG
     421 GAGAAAGAAG ATGATAAAGT CTTCCCTGGT GGAAGCCATA CATATGTCTG GCAGGTCCTG
     481 AAAGAGAATG GTCCAATGGC CTCTGACCCA CTGTGCCTTA CCTACTCATA TCTTTCTCAT
     541 GTGGACCTGG TAAAAGACTT GAATTCAGGC CTCATTGGAG CCCTACTAGT ATGTAGAGAA
     601 GGGAGTCTGG CCAAGGAAAA GACACAGACC TTGCACAAAT TTATACTACT TTTTGCTGTA
     661 TTTGATGAAG GGAAAAGTTG GCACTCAGAA ACAAAGAACT CCTTGATGCA GGATAGGGAT
     721 GCTGCATCTG CTCGGGCCTG GCCTAAAATG CACACAGTCA ATGGTTATGT AAACAGGTCT
     781 CTGCCAGGTC TGATTGGATG CCACAGGAAA TCAGTCTATT GGCATGTGAT TGGAATGGGC
     841 ACCACTCCTG AAGTGCACTC AATATTCCTC GAAGGTCACA CATTTCTTGT GAGGAACCAT
     901 CGCCAGGCGT CCTTGGAAAT CTCGCCAATA ACTTTCCTTA CTGCTCAAAC ACTCTTGATG
     961 GACCTTGGAC AGTTTCTACT GTTTTGTCAT ATCTCTTCCC ACCAACATGA TGGCATGGAA
    1021 GCTTATGTCA AAGTAGACAG CTGTCCAGAG GAACCCCAAC TACGAATGAA AAATAATGAA
    1081 GAAGCGGAAG ACTATGATGA TGATCTTACT GATTCTGAAA TGGATGTGGT CAGGTTTGAT
    1141 GATGACAACT CTCCTTCCTT TATCCAAATT CGCTCAGTTG CCAAGAAGCA TCCTAAAACT
    1201 TGGGTACATT ACATTGCTGC TGAAGAGGAG GACTGGGACT ATGCTCCCTT AGTCCTCGCC
    1261 CCCGATGACA GAAGTTATAA AAGTCAATAT TTGAACAATG GCCCTCAGCG GATTGGTAGG
    1321 AAGTACAAAA AAGTCCGATT TATGGCATAC ACAGATGAAA CCTTTAAGAC TCGTGAAGCT
    1381 ATTCAGCATG AATCAGGAAT CTTGGGACCT TTACTTTATG GGGAAGTTGG AGACACACTG
    1441 TTGATTATAT TTAAGAATCA AGCAAGCAGA CCATATAACA TCTACCCTCA CGGAATCACT
    1501 GATGTCCGTC CTTTGTATTC AAGGAGATTA CCAAAAGGTG TAAAACATTT GAAGGATTTT
    1561 CCAATTCTGC CAGGAGAAAT ATTCAAATAT AAATGGACAG TGACTGTAGA AGATGGGCCA
    1621 ACTAAATCAG ATCCTCGGTG CCTGACCCGC TATTACTCTA GTTTCGTTAA TATGGAGAGA
    1681 GATCTAGCTT CAGGACTCAT TGGCCCTCTC CTCATCTGCT ACAAAGAATC TGTAGATCAA
    1741 AGAGGAAACC AGATAATGTC AGACAAGAGG AATGTCATCC TGTTTTCTGT ATTTGATGAG
    1801 AACCGAAGCT GGTACCTCAC AGAGAATATA CAACGCTTTC TCCCCAATCC AGCTGGAGTG
    1861 CAGCTTGAGG ATCCAGAGTT CCAAGCCTCC AACATCATGC ACAGCATCAA TGGCTATGTT
    1921 TTTGATAGTT TGCAGTTGTC AGTTTGTTTG CATGAGGTGG CATACTGGTA CATTCTAAGC
    1981 ATTGGAGCAC AGACTGACTT CCTTTCTGTC TTCTTCTCTG GATATACCTT CAAACACAAA
    2041 ATGGTCTATG AAGACACACT CACCCTATTC CCATTCTCAG GAGAAACTGT CTTCATGTCG
    2101 ATGGAAAACC CAGGTCTATG GATTCTGGGG TGCCACAACT CAGACTTTCG GAACAGAGGC
    2161 ATGACCGCCT TACTGAAGGT TTCTAGTTGT GACAAGAACA CTGGTGATTA TTACGAGGAC
    2221 AGTTATGAAG ATATTTCAGC ATACTTGCTG AGTAAAAACA ATGCCATTGA ACCAAGAAGC
    2281 TTCTCTCAAA ACCCACCAGT CTTGAAACGC CATCAACGGG AAATAACTCG TACTACTCTT
    2341 CAGTCAGATC AAGAGGAAAT TGACTATGAT GATACCATAT CAGTTGAAAT GAAGAAGGAA
    2401 GATTTTGACA TTTATGATGA GGATGAAAAT CAGAGCCCCC GCAGCTTTCA AAAGAAAACA
    2461 CGACACTATT TTATTGCTGC AGTGGAGAGG CTCTGGGATT ATGGGATGAG TAGCTCCCCA
    2521 CATGTTCTAA GAAACAGGGC TCAGAGTGGC AGTGTCCCTC AGTTCAAGAA AGTTGTTTTC
    2581 CAGGAATTTA CTGATGGCTC CTTTACTCAG CCCTTATACC GTGGAGAACT AAATGAACAT
    2641 TTGGGACTCC TGGGGCCATA TATAAGAGCA GAAGTTGAAG ATAATATCAT GGTAACTTTC
    2701 AGAAATCAGG CCTCTCGTCC CTATTCCTTC TATTCTAGCC TTATTTCTTA TGAGGAAGAT
    2761 CAGAGGCAAG GAGCAGAACC TAGAAAAAAC TTTGTCAAGC CTAATGAAAC CAAAACTTAC
    2821 TTTTGGAAAG TGCAACATCA TATGGCACCC ACTAAAGATG AGTTTGACTG CAAAGCCTGG
    2881 GCTTATTTCT CTGATGTTGA CCTGGAAAAA GATGTGCACT CAGGCCTGAT TGGACCCCTT
    2941 CTGGTCTGCC ACACTAACAC ACTGAACCCT GCTCATGGGA GACAAGTGAC AGTACAGGAA
    3001 TTTGCTCTGT TTTTCACCAT CTTTGATGAG ACCAAAAGCT GGTACTTCAC TGAAAATATG
    3061 GAAAGAAACT GCAGGGCTCC CTGCAATATC CAGATGGAAG ATCCCACTTT TAAAGAGAAT
    3121 TATCGCTTCC ATGCAATCAA TGGCTACATA ATGGATACAC TACCTGGCTT AGTAATGGCT
    3181 CAGGATCAAA GGATTCGATG GTATCTGCTC AGCATGGGCA GCAATGAAAA CATCCATTCT
    3241 ATTCATTTCA GTGGACATGT GTTCACTGTA CGAAAAAAAG AGGAGTATAA AATGGCACTG
    3301 TACAATCTCT ATCCAGGTGT TTTTGAGACA GTGGAAATGT TACCATCCAA AGCTGGAATT
    3361 TGGCGGGTGG AATGCCTTAT TGGCGAGCAT CTACATGCTG GGATGAGCAC ACTTTTTCTG
    3421 GTGTACAGCA ATAAGTGTCA GACTCCCCTG GGAATGGCTT CTGGACACAT TAGAGATTTT
    3481 CAGATTACAG CTTCAGGACA ATATGGACAG TGGGCCCCAA AGCTGGCCAG ACTTCATTAT
    3541 TCCGGATCAA TCAATGCCTG GAGCACCAAG GAGCCCTTTT CTTGGATCAA GGTGGATCTG
    3601 TTGGCACCAA TGATTATTCA CGGCATCAAG ACCCAGGGTG CCCGTCAGAA GTTCTCCAGC
    3661 CTCTACATCT CTCAGTTTAT CATCATGTAT AGTCTTGATG GGAAGAAGTG GCAGACTTAT
    3721 CGAGGAAATT CCACTGGAAC CTTAATGGTC TTCTTTGGCA ATGTGGATTC ATCTGGGATA
    3781 AAACACAATA TTTTTAACCC TCCAATTATT GCTCGATACA TCCGTTTGCA CCCAACTCAT
    3841 TATAGCATTC GCAGCACTCT TCGCATGGAG TTGATGGGCT GTGATTTAAA TAGTTGCAGC
    3901 ATGCCATTGG GAATGGAGAG TAAAGCAATA TCAGATGCAC AGATTACTGC TTCATCCTAC
    3961 TTTACCAATA TGTTTGCCAC CTGGTCTCCT TCAAAAGCTC GACTTCACCT CCAAGGGAGG
    4021 AGTAATGCCT GGAGACCTCA GGTGAATAAT CCAAAAGAGT GGCTGCAAGT GGACTTCCAG
    4081 AAGACAATGA AAGTCACAGG AGTAACTACT CAGGGAGTAA AATCTCTGCT TACCAGCATG
    4141 TATGTGAAGG AGTTCCTCAT CTCCAGCAGT CAAGATGGCC ATCAGTGGAC TCTCTTTTTT
    4201 CAGAATGGCA AAGTAAAGGT TTTTCAGGGA AATCAAGACT CCTTCACACC TGTGGTGAAC
    4261 TCTCTAGACC CACCGTTACT GACTCGCTAC CTTCGAATTC ACCCCCAGAG TTGGGTGCAC
    4321 CAGATTGCCC TGAGGATGGA GGTTCTGGGC TGCGAGGCAC AGGACCTCTA CGACAAAACT
    4381 CACACATGCC CACCGTGCCC AGCACCTGAA CTCCTGGGAG GACCGTCAGT CTTCCTCTTC
    4441 CCCCCAAAAC CCAAGGACAC CCTCATGATC TCCCGGACCC CTGAGGTCAC ATGCGTGGTG
    4501 GTGGACGTGA GCCACGAAGA CCCTGAGGTC AAGTTCAACT GGTACGTGGA CGGCGTGGAG
    4561 GTGCATAATG CCAAGACAAA GCCGCGGGAG GAGCAGTACA ACAGCACGTA CCGTGTGGTC
    4621 AGCGTCCTCA CCGTCCTGCA CCAGGACTGG CTGAATGGCA AGGAGTACAA GTGCAAGGTC
    4681 TCCAACAAAG CCCTCCCAGC CCCCATCGAG AAAACCATCT CCAAAGCCAA AGGGCAGCCC
    4741 CGAGAACCAC AGGTGTACAC CCTGCCCCCA TCCCGCGATG AGCTGACCAA GAACCAGGTC
    4801 AGCCTGACCT GCCTGGTCAA AGGCTTCTAT CCCAGCGACA TCGCCGTGGA GTGGGAGAGC
    4861 AATGGGCAGC CGGAGAACAA CTACAAGACC ACGCCTCCCG TGTTGGACTC CGACGGCTCC
    4921 TTCTTCCTCT ACAGCAAGCT CACCGTCGAC AAGAGCAGGT GGCAGCAGGG GAACGTCTTC
    4981 TCATGCTCCG TGATGCATGA GGCTCTGCAC AACCACTACA CGCAGAAGAG CCTCTCCCTG
    5041 TCTCCGGGTA AACGGCGCCG CCGGAGCGGT GGCGGCGGAT CAGGTGGGGG TGGATCAGGC
    5101 GGTGGAGGTT CCGGTGGCGG GGGATCCGGC GGTGGAGGTT CCGGTGGGGG TGGATCAAGG
    5161 AAGAGGAGGA AGAGGGCGCA GGTGCAGCTG CAGGAGTCTG GGGGAGGCTT GGTACAGCCT
    5221 GGGGGGTCCC TGAGACTCTC CTGTGCAGCC TCTGGATTCA TGTTTAGCAG GTATGCCATG
    5281 AGCTGGGTCC GCCAGGCTCC AGGGAAGGGG CCAGAGTGGG TCTCAGGTAT TAGTGGTAGT
    5341 GGTGGTAGTA CATACTACGC AGACTCCGTG AAGGGCCGGT TCACCGTCTC CAGAGACAAT
    5401 TCCAAGAACA CGCTGTATCT GCAAATGAAC AGCCTGAGAG CCGAGGACAC GGCTGTATAT
    5461 TACTGCGCCC GGGGCGCCAC CTACACCAGC CGGAGCGACG TGCCCGACCA GACCAGCTTC
    5521 GACTACTGGG GCCAGGGAAC CCTGGTCACC GTCTCCTCAG GGAGTGCATC CGCCCCAAAG
    5581 CTTGAAGAAG GTGAATTTTC AGAAGCACGC GTATCTGAAC TGACTCAGGA CCCTGCTGTG
    5641 TCTGTGGCCT TGGGACAGAC AGTCAGGATC ACATGCCAAG GAGACAGCCT CAGAAACTTT
    5701 TATGCAAGCT GGTACCAGCA GAAGCCAGGA CAGGCCCCTA CTCTTGTCAT CTATGGTTTA
    5761 AGTAAAAGGC CCTCAGGGAT CCCAGACCGA TTCTCTGCCT CCAGCTCAGG AAACACAGCT
    5821 TCCTTGACCA TCACTGGGGC TCAGGCGGAA GATGAGGCTG ACTATTACTG CCTGCTGTAC
    5881 TACGGCGGCG GCCAGCAGGG CGTGTTCGGC GGCGGCACCA AGCTGACCGT CCTACGTCAG
    5941 CCCAAGGCTG CCCCCTCGGT CACTCTGTTC CCGCCCTCTT CTGCGGCCGG TGGCGGTGGC
    6001 TCCGGCGGAG GTGGGTCCGG TGGCGGCGGA TCAGGTGGGG GTGGATCAGG CGGTGGAGGT
    6061 TCCGGTGGCG GGGGATCAGA CAAAACTCAC ACATGCCCAC CGTGCCCAGC ACCGGAACTC
    6121 CTGGGCGGAC CGTCAGTCTT CCTCTTCCCC CCAAAACCCA AGGACACCCT CATGATCTCC
    6181 CGGACCCCTG AGGTCACATG CGTGGTGGTG GACGTGAGCC ACGAAGACCC TGAGGTCAAG
    6241 TTCAACTGGT ACGTGGACGG CGTGGAGGTG CATAATGCCA AGACAAAGCC GCGGGAGGAG
    6301 CAGTACAACA GCACGTACCG TGTGGTCAGC GTCCTCACCG TCCTGCACCA GGACTGGCTG
    6361 AATGGCAAGG AGTACAAGTG CAAGGTCTCC AACAAAGCCC TCCCAGCCCC CATCGAGAAA
    6421 ACCATCTCCA AAGCCAAAGG GCAGCCCCGA GAACCACAGG TGTACACCCT GCCCCCATCC
    6481 CGGGATGAGC TGACCAAGAA CCAGGTCAGC CTGACCTGCC TGGTCAAAGG CTTCTATCCC
    6541 AGCGACATCG CCGTGGAGTG GGAGAGCAAT GGGCAGCCGG AGAACAACTA CAAGACCACG
    6601 CCTCCCGTGT TGGACTCCGA CGGCTCCTTC TTCCTCTACA GCAAGCTCAC CGTGGACAAG
    6661 AGCAGGTGGC AGCAGGGGAA CGTCTTCTCA TGCTCCGTGA TGCATGAGGC TCTGCACAAC
    6721 CACTACACGC AGAAGAGCCT CTCCCTGTCT CCGGGTAAAT GA
  • FVIII-108 amino acid sequence. Signal sequence is shown in dotted underline, linker region connecting SCE5 to Fc region is underlined, and linker with proprotein convertase processing sites is shown in bold
  • 1
    Figure US20210355473A1-20211118-C00055
    61 TSVVYKKTLF VEFTDHLFNI AKPRPPWMGL LGPTIQAEVY DTVVITLKNM ASHPVSLHAV
    121 GVSYWKASEG AEYDDQTSQR EKEDDKVFPG GSHTYVWQVL KENGPMASDP LCLTYSYLSH
    181 VDLVKDLNSG LIGALLVCRE GSLAKEKTQT LHKFILLFAV FDEGKSWHSE TKNSLMQDRD
    241 AASARAWPKM HTVNGYVNRS LPGLIGCHRK SVYWHVIGMG TTPEVHSIFL EGHTFLVRNH
    301 RQASLEISPI TFLTAQTLLM DLGQFLLFCH ISSHQHDGME AYVKVDSCPE EPQLRMKNNE
    351 EAEDYDDDLT DSEMDVVRFD DDNSPSFIQI RSVAKKHPKT WVHYIAAEEE DWDYAPLVLA
    421 PDDRSYKSQY LNNGPQRIGR KYKKVREMAY TDETFKTREA IQHESGILGP LLYGEVGDTL
    481 LIIFKNQASR PYNIYPHGIT DVRPLYSRRL PKGVKHLKDF PILPGEIFKY KWTVTVEDGP
    541 TKSDPRCLTR YYSSFVNMER DLASGLIGPL LICYKESVDQ RGNQIMSDKR NVILFSVFDE
    601 NRSWYLTENI QRFLPNPAGV QLEDPEFQAS NIMHSINGYV FDSLQLSVCL HEVAYWYILS
    661 IGAQTDFLSV FFSGYTFKHK MVYEDTLTLF PFSGETVFMS MENPGLWILG CHNSDFRNRG
    721 MTALLKVSSC DKNTGDYYED SYEDISAYLL SKNNAIEPRS FSQNPPVLKR HQREITRTTL
    781 QSDQEEIDYD DTISVEMKKE DFDIYDEDEN QSPRSFQKKT RHYFIAAVER LWDYGMSSSP
    841 HVLRNRAQSG SVPQFKKVVF QEFTDGSFTQ PLYRGELNEH LGLLGPYIRA EVEDNIMVTF
    901 RNQASRPYSF YSSLISYEED QRQGAEPRKN FVKPNETKTY FWKVQHHMAP TKDEFDCKAW
    951 AYFSDVDLEK DVHSGLIGPL LVCHTNTLNP AHGRQVTVQE FALFFTIFDE TKSWYFTENM
    1021 ERNCRAPCNI QMEDPTFKEN YRFHAINGYI MDTLPGLVMA QDQRIRWYLL SMGSNENIHS
    1081 IHFSGHVFTV RKKEEYKMAL YNLYPGVFET VEMLPSKAGI WRVECLIGEH LHAGMSTLFL
    1141 VYSNKCQTPL GMASGHIRDF QITASGQYGQ WAPKLARLHY SGSINAWSTK EPFSWIKVDL
    1201 LAPMIIHGIK TQGARQKFSS LYISQFIIMY SLDGKKWQTY RGNSTGTLMV FFGNVDSSGI
    1261 KHNIFNPPII ARYIRLHPTH YSIRSTLRME LMGCDLNSCS MPLGMESKAI SDAQITASSY
    1321 FTNMFATWSP SKARLHLQGR SNAWRPQVNN PKEWLQVDFQ KTMKVTGVTT QGVKSLLTSM
    1301 YVKEFLISSS QDGHQWTLFF QNGKVKVFQG NQDSFTPVVN SLDPPLLTRY LRIHPQSWVH
    1441 QIALRMEVLG CEAQDLYDKT HTCPPCPAPE LLGGPSVFLF PPKPKDTLMI SRTPEVTCVV
    1501 VDVSHEDPEV KFNWYVDGVE VHNAKTKPRE EQYNSTYRVV SVLTVLHQDW LNGKEYKCKV
    1551 SNKALPAPIE KTISKAKGQP REPQVYTLPP SRDELTKNQV SLTCLVKGFY PSDIAVEWES
    1621 NGQPENNYKT TPPVLDSDGS FFLYSKLTVD KSRWQQGNVF SCSVMHEALH NHYTQKSLSL
    1681 SPGKRRRRSG GGGSGGGGSG GGGSGGGGSG GGGSGGGGSR KRRKRAQVQL QESGGGLVQP
    1741 GGSLRLSCAA SGEMFSRYAM SWVRQAPGKG PEWVSGISGS GGSTYYADSV KGRFTVSRDN
    1801 SKNTLYLQMN SLRAEDTAVY YCARGATYTS RSDVPDQTSF DYWGQGTLVT VSSGSASAPK
    1861 LEEGEFSEAR VSELTQDPAV SVALGQTVRI TCQGDSLRNF YASWYQQKPG QAPTLVIYGL
    1921 SKRPSGIPDR FSASSSGNTA SLTITGAQAE DEADYYCLLY YGGGQQGVFG GGTKLTVLRQ
    1901 PKAAPSVTLF PPSSAAGGGG SGGGGSGGGG SGGGGSGGGG SGGGGSDKTH TCPPCPAPEL
    2041 LGGPSVFLFP PKPKDTLMIS RTPEVTCVVV DVSHEDPEVK FNWYVDGVEV HNAKTKPREE
    2101 QYNSTYRVVS VLTVLHQDWL NGKEYKCKVS NKALPAPIEK TISKAKGQPR EPQVYTLPPS
    2161 RDELTKNQVS LTCLVKGFYP SDIAVEWESN GQPENNYKTT PPVLDSDGSF FLYSKLTVDK
    2221 SRWQQGNVFS CSVMHEALHN HYTQKSLSLS PGK*
  • DNA sequence for pSYN-FVIII-049 
       1 ATGCAAATAG AGCTCTCCAC CTGCTTCTTT CTGTGCCTTT TGCGATTCTG CTTTAGTGCC 
      61 ACCAGAAGAT ACTACCTGGG TGCAGTGGAA CTGTCATGGG ACTATATGCA AAGTGATCTC 
     121 GGTGAGCTGC CTGTGGACGC AAGATTTCCT CCTAGAGTGC CAAAATCTTT TCCATTCAAC 
     181 ACCTCAGTCG TGTACAAAAA GACTCTGTTT GTAGAATTCA CGGATCACCT TTTCAACATC 
     241 GCTAAGCCAA GGCCACCCTG GATGGGTCTG CTAGGTCCTA CCATCCAGGC TGAGGTTTAT 
     301 GATACAGTGG TCATTACACT TAAGAACATG GCTTCCCATC CTGTCAGTCT TCATGCTGTT 
     361 GGTGTATCCT ACTGGAAAGC TTCTGAGGGA GCTGAATATG ATGATCAGAC CAGTCAAAGG 
     421 GAGAAAGAAG ATGATAAAGT CTTCCCTGGT GGAAGCCATA CATATGTCTG GCAGGTCCTG 
     481 AAAGAGAATG GTCCAATGGC CTCTGACCCA CTGTGCCTTA CCTACTCATA TCTTTCTCAT 
     541 GTGGACCTGG TAAAAGACTT GAATTCAGGC CTCATTGGAG CCCTACTAGT ATGTAGAGAA 
     601 GGGAGTCTGG CCAAGGAAAA GACACAGACC TTGCACAAAT TTATACTACT TTTTGCTGTA 
     661 TTTGATGAAG GGAAAAGTTG GCACTCAGAA ACAAAGAACT CCTTGATGCA GGATAGGGAT 
     721 GCTGCATCTG CTCGGGCCTG GCCTAAAATG CACACAGTCA ATGGTTATGT AAACAGGTCT 
     161 CTGCCAGGTC TGATTGGATG CCACAGGAAA TCAGTCTATT GGCATGTGAT TGGAATGGGC 
     841 ACCACTCCTG AAGTGCACTC AATATTCCTC GAAGGTCACA CATTTCTTGT GAGGAACCAT 
     901 CGCCAGGCGT CCTTGGAAAT CTCGCCAATA ACTTTCCTTA CTGCTCAAAC ACTCTTGATG 
     961 GACCTTGGAC AGTTTCTACT GTTTTGTCAT ATCTCTTCCC ACCAACATGA TGGCATGGAA 
    1021 GCTTATGTCA AAGTAGACAG CTGTCCAGAG GAACCCCAAC TACGAATGAA AAATAATGAA 
    1081 GAAGCGGAAG ACTATGATGA TGATCTTACT GATTCTGAAA TGGATGTGGT CAGGTTTGAT 
    1141 GATGACAACT CTCCTTCCTT TATCCAAATT CGCTCAGTTG CCAAGAAGCA TCCTAAAACT 
    1201 TGGGTACATT ACATTGCTGC TGAAGAGGAG GACTGGGACT ATGCTCCCTT AGTCCTCGCC 
    1261 CCCGATGACA GAAGTTATAA AAGTCAATAT TTGAACAATG GCCCTCAGCG GATTGGTAGG 
    1321 AAGTACAAAA AAGTCCGATT TATGGCATAC ACAGATGAAA CCTTTAAGAC TCGTGAAGCT 
    1381 ATTCAGCATG AATCAGGAAT CTTGGGACCT TTACTTTATG GGGAAGTTGG AGACACACTG 
    1441 TTGATTATAT TTAAGAATCA AGCAAGCAGA CCATATAACA TCTACCCTCA CGGAATCACT 
    1501 GATGTCCGTC CTTTGTATTC AAGGAGATTA CCAAAAGGTG TAAAACATTT GAAGGATTTT 
    1561 CCAATTCTGC CAGGAGAAAT ATTCAAATAT AAATGGACAG TGACTGTAGA AGATGGGCCA 
    1621 ACTAAATCAG ATCCTCGGTG CCTGACCCGC TATTACTCTA GTTTCGTTAA TATGGAGAGA 
    1601 GATCTAGCTT CAGGACTCAT TGGCCCTCTC CTCATCTGCT ACAAAGAATC TGTAGATCAA 
    1141 AGAGGAAACC AGATAATGTC AGACAAGAGG AATGTCATCC TGTTTTCTGT ATTTGATGAG 
    1801 AACCGAAGCT GGTACCTCAC AGAGAATATA CAACGCTTTC TCCCCAATCC AGCTGGAGTG 
    1851 CAGCTTGAGG ATCCAGAGTT CCAAGCCTCC AACATCATGC ACAGCATCAA TGGCTATGTT 
    1921 TTTGATAGTT TGCAGTTGTC AGTTTGTTTG CATGAGGTGG CATACTGGTA CATTCTAAGC 
    1961 ATTGGAGCAC AGACTGACTT CCTTTCTGTC TTCTTCTCTG GATATACCTT CAAACACAAA 
    2041 ATGGTCTATG AAGACACACT CACCCTATTC CCATTCTCAG GAGAAACTGT CTTCATGTCG 
    2101 ATGGAAAACC CAGGTCTATG GATTCTGGGG TGCCACAACT CAGACTTTCG GAACAGAGGC 
    2161 ATGACCGCCT TACTGAAGGT TTCTAGTTGT GACAAGAACA CTGGTGATTA TTACGAGGAC 
    2221 AGTTATGAAG ATATTTCAGC ATACTTGCTG AGTAAAAACA ATGCCATTGA ACCAAGAAGC 
    2201 TTCTCTCAAA ACCCACCAGT CTTGAAACGC CATCAACGGG AAATAACTCG TACTACTCTT 
    2341 CAGTCAGATC AAGAGGAAAT TGACTATGAT GATACCATAT CAGTTGAAAT GAAGAAGGAA 
    2401 GATTTTGACA TTTATGATGA GGATGAAAAT CAGAGCCCCC GCAGCTTTCA AAAGAAAACA 
    2451 CGACACTATT TTATTGCTGC AGTGGAGAGG CTCTGGGATT ATGGGATGAG TAGCTCCCCA 
    2521 CATGTTCTAA GAAACAGGGC TCAGAGTGGC AGTGTCCCTC AGTTCAAGAA AGTTGTTTTC 
    2561 CAGGAATTTA CTGATGGCTC CTTTACTCAG CCCTTATACC GTGGAGAACT AAATGAACAT 
    2641 TTGGGACTCC TGGGGCCATA TATAAGAGCA GAAGTTGAAG ATAATATCAT GGTAACTTTC 
    2101 AGAAATCAGG CCTCTCGTCC CTATTCCTTC TATTCTAGCC TTATTTCTTA TGAGGAAGAT 
    2761 CAGAGGCAAG GAGCAGAACC TAGAAAAAAC TTTGTCAAGC CTAATGAAAC CAAAACTTAC 
    2821 TTTTGGAAAG TGCAACATCA TATGGCACCC ACTAAAGATG AGTTTGACTG CAAAGCCTGG 
    2881 GCTTATTTCT CTGATGTTGA CCTGGAAAAA GATGTGCACT CAGGCCTGAT TGGACCCCTT 
    2941 CTGGTCTGCC ACACTAACAC ACTGAACCCT GCTCATGGGA GACAAGTGAC AGTACAGGAA 
    3001 TTTGCTCTGT TTTTCACCAT CTTTGATGAG ACCAAAAGCT GGTACTTCAC TGAAAATATG 
    3051 GAAAGAAACT GCAGGGCTCC CTGCAATATC CAGATGGAAG ATCCCACTTT TAAAGAGAAT 
    31:1 TATCGCTTCC ATGCAATCAA TGGCTACATA ATGGATACAC TACCTGGCTT AGTAATGGCT 
    3161 CAGGATCAAA GGATTCGATG GTATCTGCTC AGCATGGGCA GCAATGAAAA CATCCATTCT 
    3241 ATTCATTTCA GTGGACATGT GTTCACTGTA CGAAAAAAAG AGGAGTATAA AATGGCACTG 
    3301 TACAATCTCT ATCCAGGTGT TTTTGAGACA GTGGAAATGT TACCATCCAA AGCTGGAATT 
    3361 TGGCGGGTGG AATGCCTTAT TGGCGAGCAT CTACATGCTG GGATGAGCAC ACTTTTTCTG 
    3421 GTGTACAGCA ATAAGTGTCA GACTCCCCTG GGAATGGCTT CTGGACACAT TAGAGATTTT 
    3481 CAGATTACAG CTTCAGGACA ATATGGACAG TGGGCCCCAA AGCTGGCCAG ACTTCATTAT 
    3541 TCCGGATCAA TCAATGCCTG GAGCACCAAG GAGCCCTTTT CTTGGATCAA GGTGGATCTG 
    3601 TTGGCACCAA TGATTATTCA CGGCATCAAG ACCCAGGGTG CCCGTCAGAA GTTCTCCAGC 
    3661 CTCTACATCT CTCAGTTTAT CATCATGTAT AGTCTTGATG GGAAGAAGTG GCAGACTTAT 
    3721 CGAGGAAATT CCACTGGAAC CTTAATGGTC TTCTTTGGCA ATGTGGATTC ATCTGGGATA 
    3181 AAACACAATA TTTTTAACCC TCCAATTATT GCTCGATACA TCCGTTTGCA CCCAACTCAT 
    3841 TATAGCATTC GCAGCACTCT TCGCATGGAG TTGATGGGCT GTGATTTAAA TAGTTGCAGC 
    3901 ATGCCATTGG GAATGGAGAG TAAAGCAATA TCAGATGCAC AGATTACTGC TTCATCCTAC 
    3951 TTTACCAATA TGTTTGCCAC CTGGTCTCCT TCAAAAGCTC GACTTCACCT CCAAGGGAGG 
    4021 AGTAATGCCT GGAGACCTCA GGTGAATAAT CCAAAAGAGT GGCTGCAAGT GGACTTCCAG 
    4081 AAGACAATGA AAGTCACAGG AGTAACTACT CAGGGAGTAA AATCTCTGCT TACCAGCATG 
    4141 TATGTGAAGG AGTTCCTCAT CTCCAGCAGT CAAGATGGCC ATCAGTGGAC TCTCTTTTTT 
    4201 CAGAATGGCA AAGTAAAGGT TTTTCAGGGA AATCAAGACT CCTTCACACC TGTGGTGAAC 
    4261 TCTCTAGACC CACCGTTACT GACTCGCTAC CTTCGAATTC ACCCCCAGAG TTGGGTGCAC 
    4321 CAGATTGCCC TGAGGATGGA GGTTCTGGGC TGCGAGGCAC AGGACCTCTA CGACAAAACT 
    4381 CACACATGCC CACCGTGCCC AGCACCTGAA CTCCTGGGAG GACCGTCAGT CTTCCTCTTC 
    4441 CCCCCAAAAC CCAAGGACAC CCTCATGATC TCCCGGACCC CTGAGGTCAC ATGCGTGGTG 
    4501 GTGGACGTGA GCCACGAAGA CCCTGAGGTC AAGTTCAACT GGTACGTGGA CGGCGTGGAG 
    4551 GTGCATAATG CCAAGACAAA GCCGCGGGAG GAGCAGTACA ACAGCACGTA CCGTGTGGTC 
    4621 AGCGTCCTCA CCGTCCTGCA CCAGGACTGG CTGAATGGCA AGGAGTACAA GTGCAAGGTC 
    4681 TCCAACAAAG CCCTCCCAGC CCCCATCGAG AAAACCATCT CCAAAGCCAA AGGGCAGCCC 
    4141 CGAGAACCAC AGGTGTACAC CCTGCCCCCA TCCCGCGATG AGCTGACCAA GAACCAGGTC 
    4801 AGCCTGACCT GCCTGGTCAA AGGCTTCTAT CCCAGCGACA TCGCCGTGGA GTGGGAGAGC 
    4861 AATGGGCAGC CGGAGAACAA CTACAAGACC ACGCCTCCCG TGTTGGACTC CGACGGCTCC 
    4921 TTCTTCCTCT ACAGCAAGCT CACCGTCGAC AAGAGCAGGT GGCAGCAGGG GAACGTCTTC 
    4981 TCATGCTCCG TGATGCATGA GGCTCTGCAC AACCACTACA CGCAGAAGAG CCTCTCCCTG 
    5041 TCTCCGGGTA AACGGCGCCG CCGGAGCGGT GGCGGCGGAT CAGGTGGGGG TGGATCAGGC 
    5101 GGTGGAGGTT CCGGTGGCGG GGGATCCGGC GGTGGAGGTT CCGGTGGGGG TGGATCAAGG 
    5151 AAGAGGAGGA AGAGGGACAA AACTCACACA TGCCCACCGT GCCCAGCTCC AGAACTCCTG 
    5221 GGCGGACCGT CAGTCTTCCT CTTCCCCCCA AAACCCAAGG ACACCCTCAT GATCTCCCGG 
    5281 ACCCCTGAGG TCACATGCGT GGTGGTGGAC GTGAGCCACG AAGACCCTGA GGTCAAGTTC 
    5341 AACTGGTACG TGGACGGCGT GGAGGTGCAT AATGCCAAGA CAAAGCCGCG GGAGGAGCAG 
    5401 TACAACAGCA CGTACCGTGT GGTCAGCGTC CTCACCGTCC TGCACCAGGA CTGGCTGAAT 
    5461 GGCAAGGAGT ACAAGTGCAA GGTCTCCAAC AAAGCCCTCC CAGCCCCCAT CGAGAAAACC 
    5521 ATCTCCAAAG CCAAAGGGCA GCCCCGAGAA CCACAGGTGT ACACCCTGCC CCCATCCCGG 
    5581 GATGAGCTGA CCAAGAACCA GGTCAGCCTG ACCTGCCTGG TCAAAGGCTT CTATCCCAGC 
    5641 GACATCGCCG TGGAGTGGGA GAGCAATGGG CAGCCGGAGA ACAACTACAA GACCACGCCT 
    5101 CCCGTGTTGG ACTCCGACGG CTCCTTCTTC CTCTACAGCA AGCTCACCGT GGACAAGAGC 
    5761 AGGTGGCAGC AGGGGAACGT CTTCTCATGC TCCGTGATGC ATGAGGCTCT GCACAACCAC 
    5821 TACACGCAGA AGAGCCTCTC CCTGTCTCCG GGTAAATGA 
  • FVIII-049 amino acid sequence. Signal sequence is shown in dotted underline, and linker with proprotein convertase processing sites is shown in bold
  • Figure US20210355473A1-20211118-C00056
      61 TSVVYKKTLF VEFTDHLFNI AKPRPPWMGL LGPTIQAEVY DTVVITLKNM ASHPVSLHAV
     121 GVSYWKASEG AEYDDQTSQR EKEDDKVFPG GSHTYVWQVL KENGPMASDP LCLTYSYLSH
     181 VDLVKDLNSG LIGALLVCRE GSLAKEKTQT LHKFILLFAV FDEGKSWHSE TKNSLMQDRD
     241 AASARAWPKM HTVNGYVNRS LPGLIGCHRK SVYWHVIGMG TTPEVHSIFL EGHTFLVRNH
     301 RQASLEISPI TFLTAQTLLM DLGQFLLFCH ISSHQHDGME AYVKVDSCPE EPQLRMKNNE
     361 EAEDYDDDLT DSEMDVVRFD DDNSPSFIQI RSVAKKHPKT WVHYIAAEEE DWDYAPLVLA
     421 PDDRSYKSQY LNNGPQRIGR KYKKVRFMAY TDETFKTREA IQHESGILGP LLYGEVGDTL
     481 LIIFKNQASR PYNIYPHGIT DVRPLYSRRL PKGVKHLKDF PILPGEIFKY KWTVTVEDGP
     541 TKSDPRCLTR YYSSFVNMER DLASGLIGPL LICYKESVDQ RGNQIMSDKR NVILFSVFDE
     601 NRSWYLTENI QRFLPNPAGV QLEDPEFQAS NIMHSINGYV FDSLQLSVCL HEVAYWYILS
     661 IGAQTDFLSV FFSGYTFKHK MVYEDTLTLF PFSGETVFMS MENPGLWILG CHNSDFRNRG
     721 MTALLKVSSC DKNTGDYYED SYEDISAYLL SKNNAIEPRS FSQNPPVLKR HQREITRTTL
     781 QSDQEEIDYD DTISVEMKKE DFDIYDEDEN QSPRSFQKKT RHYFIAAVER LWDYGMSSSP
     841 HVLRNRAQSG SVPQFKKVVF QEFTDGSFTQ PLYRGELNEH LGLLGPYIRA EVEDNIMVTF
     901 RNQASRPYSF YSSLISYEED QRQGAEPRKN FVKPNETKTY FWKVQHHMAP TKDEFDCKAW
     961 AYFSDVDLEK DVHSGLIGPL LVCHTNTLNP AHGRQVTVQE FALFFTIFDE TKSWYFTENM
    1021 ERNCRAPCNI QMEDPTFKEN YRFHAINGYI MDTLPGLVMA QDQRIRWYLL SMGSNENIHS
    1081 IHFSGHVFTV RKKEEYKMAL YNLYPGVFET VEMLPSKAGI WRVECLIGEH LHAGMSTLFL
    1141 VYSNKCQTPL GMASGHIRDF QITASGQYGQ WAPKLARLHY SGSINAWSTK EPFSWIKVDL
    1201 LAPMIIHGIK TQGARQKFSS LYISQFIIMY SLDGKKWQTY RGNSTGTLMV FFGNVDSSGI
    1261 KHNIFNPPII ARYIRLHPTH YSIRSTLRME LMGCDLNSCS MPLGMESKAI SDAQITASSY
    1321 FTNMFATWSP SKARLHLQGR SNAWRPQVNN PKEWLQVDFQ KTMKVTGVTT QGVKSLLTSM
    1381 YVKEFLISSS QDGHQWTLFF QNGKVKVFQG NQDSFTPVVN SLDPPLLTRY LRIHPQSWVH
    1441 QIALRMEVLG CEAQDLYDKT HTCPPCPAPE LLGGPSVFLF PPKPKDTLMI SRTPEVTCVV
    1501 VDVSHEDPEV KFNWYVDGVE VHNAKTKPRE EQYNSTYRVV SVLTVLHQDW LNGKEYKCKV
    1561 SNKALPAPIE KTISKAKGQP REPQVYTLPP SRDELTKNQV SLTCLVKGFY PSDIAVEWES
    1621 NGQPENNYKT TPPVLDSDGS FFLYSKLTVD KSRWQQGNVF SCSVMHEALH NHYTQKSLSL
    1681 SPGKRRRRSG GGGSGGGGSG GGGSGGGGSG GGGSGGGGSR KRRKRDKTHT CPPCPAPELL
    1741 GGPSVFLFPP KPKDTLMISR TPEVTCVVVD VSHEDPEVKF NWYVDGVEVH NAKTKPREEQ
    1801 YNSTYRVVSV LTVLHQDWLN GKEYKCKVSN KALPAPIEKT ISKAKGQPRE PQVYTLPPSR
    1861 DELTKNQVSL TCLVKGFYPS DIAVEWESNG QPENNYKTTP PVLDSDGSFF LYSKLTVDKS
    1921 RWQQGNVFSC SVMHEALHNH YTQKSLSLSP GK*

Claims (34)

1. A chimeric clotting factor which comprises i) a clotting factor selected from the group consisting of FVII, FIX and FX and ii) a targeting moiety and, optionally, iii) a spacer moiety between the clotting factor and the targeting moiety.
2. The chimeric clotting factor of claim 1, which comprises a structure represented by the formula A B C, wherein A is the clotting factor; wherein B is a spacer moiety; and wherein C is at least one targeting moiety which binds to platelets.
3-4. (canceled)
5. The chimeric clotting factor of claim 1, further comprising a scaffold moiety and, optionally, a second spacer moiety.
6. (canceled)
7. The chimeric clotting factor of claim 1, further comprising a dimeric Fc region comprising a first Fc moiety, F1 and a second Fc moiety, F2.
8. The chimeric clotting factor of claim 7, wherein the chimeric clotting factor is expressed as a polypeptide comprising a cleavable single chain Fc (cscFc) linker interposed between the two Fc moieties, wherein the cscFc linker is adjacent to at least one enzymatic cleavage site which results in cleavage of the cscFc polypeptide linker.
9-19. (canceled)
20. The chimeric clotting factor of claim 7, wherein the targeting moiety is fused to at least one of F1 and F2.
21-23. (canceled)
24. The chimeric clotting factor of claim 1, wherein the targeting moiety is selected from the group consisting of: an antibody molecule, an antigen binding fragment of an antibody molecule, an scFv molecule, a receptor binding portion of a receptor, and a peptide.
25-31. (canceled)
32. The chimeric clotting factor of claim 1, wherein the clotting factor is Factor VII.
33. (canceled)
34. The chimeric clotting factor of claim 1, wherein the clotting factor is Factor IX.
35. (canceled)
36. The chimeric clotting factor of claim 1, wherein the clotting factor is Factor X.
37-39. (canceled)
40. The chimeric clotting factor of claim 1, wherein the chimeric clotting factor comprises a heterologous enzymatic cleavage site not naturally present in the clotting factor.
41-43. (canceled)
44. A polypeptide comprising FVII, which FVII comprises a heterologous enzymatic cleavage site activatable by a component of the clotting cascade.
45. The polypeptide of claim 44, wherein the polypeptide comprises a scaffold moiety and, optionally, a spacer moiety.
46. The chimeric clotting factor of claim 45, wherein the scaffold moiety is a dimeric Fc region comprising a first Fc moiety, F1 and a second Fc moiety, F2.
47-70. (canceled)
71. A nucleic acid molecule encoding a chimeric clotting factor of claim 1.
72. A vector comprising the nucleic acid molecule of claim 71.
73-74. (canceled)
75. A host cell comprising the vector of claim 72, wherein the host cell expresses an enzyme capable of intracellular processing.
76-77. (canceled)
78. A method for producing a chimeric clotting factor comprising culturing the host cell of claim 75 in culture and recovering the chimeric clotting factor from the medium.
79. A processed, heterodimeric polypeptide comprising two polypeptide chains, wherein said processed, heterodimeric polypeptide is made by expressing the vector of claim 78 in a cell cultured in cell culture medium and isolating the mature, heterodimeric polypeptide from the culture medium.
80. A pharmaceutical composition comprising the chimeric clotting factor claim 1 and a pharmaceutically acceptable carrier.
81. (canceled)
82. A method for improving hemostasis in a subject, comprising administering to a subject in need thereof an effective amount of the composition of claim 1.
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