US20210317156A1 - New polymer linked multimers of guanosine-3', 5'-cyclic monophosphates - Google Patents

New polymer linked multimers of guanosine-3', 5'-cyclic monophosphates Download PDF

Info

Publication number
US20210317156A1
US20210317156A1 US16/329,031 US201716329031A US2021317156A1 US 20210317156 A1 US20210317156 A1 US 20210317156A1 US 201716329031 A US201716329031 A US 201716329031A US 2021317156 A1 US2021317156 A1 US 2021317156A1
Authority
US
United States
Prior art keywords
cyclic monophosphate
guanosine
phenyl
thio
cyclic
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Abandoned
Application number
US16/329,031
Inventor
Hans-Gottfried Genieser
Frank Schwede
Andreas Rentsch
Valeria Marigo
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Graybug Vision Inc
Original Assignee
Mireca Medicines GmbH
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Mireca Medicines GmbH filed Critical Mireca Medicines GmbH
Assigned to MIRECA MEDICINES GMBH reassignment MIRECA MEDICINES GMBH ASSIGNMENT OF ASSIGNORS INTEREST (SEE DOCUMENT FOR DETAILS). Assignors: RENTSCH, ANDREAS, SCHWEDE, FRANK, MARIGO, VALERIA, GENIESER, HANS-GOTTFRIED
Publication of US20210317156A1 publication Critical patent/US20210317156A1/en
Assigned to Graybug Vision, Inc. reassignment Graybug Vision, Inc. ASSIGNMENT OF ASSIGNORS INTEREST (SEE DOCUMENT FOR DETAILS). Assignors: MIRECA MEDICINES GMBH
Abandoned legal-status Critical Current

Links

Images

Classifications

    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07HSUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
    • C07H19/00Compounds containing a hetero ring sharing one ring hetero atom with a saccharide radical; Nucleosides; Mononucleotides; Anhydro-derivatives thereof
    • C07H19/02Compounds containing a hetero ring sharing one ring hetero atom with a saccharide radical; Nucleosides; Mononucleotides; Anhydro-derivatives thereof sharing nitrogen
    • C07H19/04Heterocyclic radicals containing only nitrogen atoms as ring hetero atom
    • C07H19/16Purine radicals
    • C07H19/20Purine radicals with the saccharide radical esterified by phosphoric or polyphosphoric acids
    • C07H19/213Purine radicals with the saccharide radical esterified by phosphoric or polyphosphoric acids containing cyclic phosphate
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P1/00Drugs for disorders of the alimentary tract or the digestive system
    • A61P1/04Drugs for disorders of the alimentary tract or the digestive system for ulcers, gastritis or reflux esophagitis, e.g. antacids, inhibitors of acid secretion, mucosal protectants
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P11/00Drugs for disorders of the respiratory system
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P19/00Drugs for skeletal disorders
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P19/00Drugs for skeletal disorders
    • A61P19/02Drugs for skeletal disorders for joint disorders, e.g. arthritis, arthrosis
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P19/00Drugs for skeletal disorders
    • A61P19/08Drugs for skeletal disorders for bone diseases, e.g. rachitism, Paget's disease
    • A61P19/10Drugs for skeletal disorders for bone diseases, e.g. rachitism, Paget's disease for osteoporosis
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P21/00Drugs for disorders of the muscular or neuromuscular system
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P21/00Drugs for disorders of the muscular or neuromuscular system
    • A61P21/02Muscle relaxants, e.g. for tetanus or cramps
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P25/00Drugs for disorders of the nervous system
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P29/00Non-central analgesic, antipyretic or antiinflammatory agents, e.g. antirheumatic agents; Non-steroidal antiinflammatory drugs [NSAID]
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P31/00Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P33/00Antiparasitic agents
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P33/00Antiparasitic agents
    • A61P33/02Antiprotozoals, e.g. for leishmaniasis, trichomoniasis, toxoplasmosis
    • A61P33/06Antimalarials
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P35/00Antineoplastic agents
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P35/00Antineoplastic agents
    • A61P35/04Antineoplastic agents specific for metastasis
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P37/00Drugs for immunological or allergic disorders
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P37/00Drugs for immunological or allergic disorders
    • A61P37/02Immunomodulators
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P5/00Drugs for disorders of the endocrine system
    • A61P5/14Drugs for disorders of the endocrine system of the thyroid hormones, e.g. T3, T4
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P9/00Drugs for disorders of the cardiovascular system
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P9/00Drugs for disorders of the cardiovascular system
    • A61P9/10Drugs for disorders of the cardiovascular system for treating ischaemic or atherosclerotic diseases, e.g. antianginal drugs, coronary vasodilators, drugs for myocardial infarction, retinopathy, cerebrovascula insufficiency, renal arteriosclerosis
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P9/00Drugs for disorders of the cardiovascular system
    • A61P9/12Antihypertensives

Definitions

  • the present invention relates to novel polymer linked multimers of guanosine-3′, 5′-cyclic nucleotide monophosphates, including tethered di-, tri- and tetramers and their application in the fields of medicine and pharmacy.
  • the invention also relates to specific monomers as precursors.
  • the invention further relates to the use of such compounds as reagents for signal transduction research and as modulators of cyclic nucleotide-regulated binding proteins and isoenzymes thereof, and as ligands for affinity chromatography, for antibody production or for diagnostic applications e.g. on chip surfaces.
  • cGMP Guanosine-3′,5′-cyclic monophosphate
  • the cGMP signaling cascade therefore has been recognized as a potential pharmacological target and is investigated by numerous academic groups and pharmaceutical companies. Research in this field demands for compounds that effectively modulate different targets of the said cascade. For this purpose, a number of cGMP analogues featuring cell permeability (in contrast to cGMP), enhanced activity and increased resistance to degradation by phosphodiesterases (PDE) have been established.
  • cell permeability in contrast to cGMP
  • PDE phosphodiesterases
  • cGMP analogues need to comply with a complex profile of characteristics that is unique for each biological system, to achieve a maximum effect. While applied compounds are usually selected for their ability to interfere with the main target of a studied mechanism of a disease, condition or disorder, there are always several required characteristics of a compound, that cannot be predicted and demand for testing a large set of analogues. Accordingly, for the increasing number of applications there is growing need for constantly expanding the group of available cGMP analogues with derivatives that feature another combination of characteristics as well as further improved activation potential, target specificity or multi target effects. Also tailor-made modifications such as reporting groups are desired variations for instance for research or diagnostic purposes.
  • cGMP dependent protein kinase PKG
  • I ⁇ , Iß and II three isoforms
  • a desired selective biological effect is always also an issue of the activation potential.
  • PLM polymer linked multimers
  • This concept comprises the idea of achieving a strong enhancement of activity through addressing multiple binding sites with a single molecule.
  • PMD polymer linked dimeric cGMP
  • the achieved objective of the present invention has been to provide new polymer linked multimeric analogues of guanosine-3′,5′-cyclic monophosphate (PLMs) including di-, tri- and tetrameric derivatives, which are compared to monomeric analogues used so far, improved in terms of PKG Iß and/or PKG II activation potential.
  • PLMs guanosine-3′,5′-cyclic monophosphate
  • the new PLMs additionally interfere with PKG I ⁇ , wherein it is even more preferred that the activation potential for this isoform exceeds the previously reported one for a polymer linked dimer.
  • Another objective of the invention has been, to provide PKG activators, which can be functionalized (e.g. with a reporting group), while essentially maintaining their target affinity.
  • a further objective of the invention has been to provide the new PLMs as pharmaceutically acceptable analogues for treating or diagnosing a disease, condition or disorder associated with dysregulation of a cGMP-effected cellular target, wherein additional targets can be, including, but not limited to, a hyperpolarization-activated cyclic nucleotide-gated (HCN) channel, a phosphodiesterase (PDE) and a cGMP-gated channel (CNGC).
  • HCNGC hyperpolarization-activated cyclic nucleotide-gated
  • PDE phosphodiesterase
  • CNGC cGMP-gated channel
  • the objective of the invention has been to provide the new PLMs for application as research tool to identify and validate the cGMP-system in cell cultures or tissues or as a diagnostic tool.
  • Embodiments of the invention are directed to new polymer linked multimeric guanosine-3′, 5′-cyclic monophosphate (cGMP) analogues that modulate the cGMP-signaling system, preferably having activating properties, and more preferably being activators of cGMP dependent protein kinase (PKG), and related monomeric precursors thereof.
  • cGMP polymer linked multimeric guanosine-3′, 5′-cyclic monophosphate
  • PKG cGMP dependent protein kinase
  • Another achieved objective of the present invention has been to provide related monomeric compounds, which may serve as monomeric precursors of the multimers of the present invention and/or may also show modulating activity.
  • another objective of the invention has been to provide related monomeric compounds as pharmaceutically acceptable analogues for treating or diagnosing a disease, condition or disorder associated with dysregulation of a cGMP-effected cellular target, wherein additional tar-gets can be, including, but not limited to, a hyperpolarization-activated cyclic nucleotide-gated (HCN) channel, a phosphodiesterase (PDE) and a cGMP-gated channel (CNGC).
  • HCN hyperpolarization-activated cyclic nucleotide-gated
  • PDE phosphodiesterase
  • CNGC cGMP-gated channel
  • the objective of the invention has been to provide the new related monomeric compounds for application as research tool to identify and validate the cGMP-system in cell cultures or tissues or as a diagnostic tool.
  • Embodiments of the invention are directed to new related monomeric compound analogues that modulate the cGMP-signaling system, preferably having activating properties, and more preferably being activators of cGMP dependent protein kinase (PKG).
  • FIG. 1 Previously reported polymer linked dimeric cGMP 5
  • FIG. 2 Example of a trimeric compound according to the invention, illustrating the used variables.
  • FIGS. 3 to 5 In vitro activation of PKG isoforms by polymer linked cGMP derivatives featuring different spacer lengths with and without PET-modification ( FIG. 3 ), varied linking position ( FIG. 4 ) and unequal cGMP (analogue) units with and without unequal linking positions ( FIG. 5 ).
  • PKG isozymes I ⁇ (0.2 nM), I ⁇ (0.15 nM) and II (0.5 nM) were incubated with different concentrations (10 pM to 6 ⁇ M) of compounds of the invention and cGMP as reference compound at room temperature for 60 min.
  • the activation values of the compounds are expressed as relative PKG activation compared to cGMP with cGMP set as 1 for each kinase isozyme.
  • the K a -values of cGMP for half-maximal kinase activation were 28 nM for I ⁇ , 425 nM for I ⁇ and 208 nM for II.
  • Compound numbers refer to analogues displayed in Table 13.
  • FIG. 6 Expression of PKG isoforms in 661W cells.
  • RT-PCR on cDNA from mRNA extracted from 661W cell The 661W cell line expresses the PKG isoforms I ⁇ and II. Heart and muscle tissues were used as positive controls.
  • FIG. 7 Increased cell death in the 661W cell line after treatment with different polymer linked dimeric cGMP analogues.
  • the new polymer linked multimeric cGMP analogues of the invention are compounds having the formula (I) or (II)
  • G units G 1 and G 2 independently are compounds of formula (III) and G units G 3 and G 4 independently from G 1 and G 2 and independently from each other are compounds of formula (III) or absent, wherein in case of formula (II) G 4 is always absent if G 3 is absent,
  • R 1 , R 4 , R 5 , R 7 and R 8 independently can be equal or individual for each G unit (G 1 , G 2 , G 3 and G 4 ), while
  • linking residues LR 1 , LR 2 , LR 3 and LR 4 independently can replace or covalently bind to any of the particular residues R 1 , R 4 and/or R 5 of the G units (G 1-4 ) they connect,
  • an endstanding group of the particular residue (R 1 , R 4 and/or R 5 ), as defined above, is transformed or replaced in the process of establishing the connection and is then further defined as part of the particular linking residue (LR 1-4 ) within the assembled compound,
  • G 1 , G 2 , G 3 and G 4 can further be salts and/or hydrates
  • G 1 , G 2 , G 3 and G 4 can optionally be isotopically or radioactively labeled, be PEGylated, immobilized or be labeled with a dye or another reporting group,
  • the precedingly defined compound of formula (I) and/or (II) may be a compound, wherein at least two G units are unequally substituted.
  • the precedingly defined compound of formula (I) and/or (II) may be a compound, wherein in case of formula (I) G3 and G4 are absent, or in case of formula (II) G 3 , G 4 , LR 3 and LR 4 are absent; and wherein R 4 is not H and/or R 5 is not NH 2 .
  • the precedingly defined compound of formula (I) and/or (II) may be a compound, wherein at least one G unit is linked via a position other than R 1 .
  • the precedingly defined compound of formula (I) and/or (II) may be a compound, wherein in case of formula (I) G 3 and G 4 are absent, or in case of formula (II) G 3 , G 4 , LR 3 and LR 4 are absent.
  • any of the precedingly defined compounds of formula (I) and/or (II) may be a compound, wherein all R 7 are SH and all R 8 are O, or all R 7 are O and all R 8 are OH.
  • Halogen refers to F, Cl, Br, and I.
  • Alkyl refers to an alkyl group, which is a hydrocarbon moiety with 1 to 28, preferably 1 to 20 carbon atoms, with or without (integrated) heteroatoms such as but not limited to O, S, Si, N, Se, B, wherein the point of attachment unless specified otherwise is a carbon atom. Its constitution can be
  • Linear saturated hydrocarbon moiety including, but not limited to, methyl, ethyl, propyl, butyl and pentyl or
  • Linear unsaturated hydrocarbon moiety containing more preferably 2 to 20 carbon atoms, including, but not limited to, ethylen, propylen, butylen and pentylen or
  • Branched saturated hydrocarbon moiety deviceiating from the general alkyl definition by containing at least 3 carbon atoms and including, but not limited to, isopropyl, sec.-butyl and tert.-butyl or
  • Branched unsaturated hydrocarbon moiety deviceiating from the general alkyl definition by containing at least 3 carbon atoms and including, but not limited to, isopropenyl, isobutenyl, isopentenyl and 4-methyl-3-pentenyl
  • Cyclic saturated hydrocarbon moiety containing more preferably 3 to 8 ring atoms and including, but not limited to, cyclopentyl, cyclohexyl, cycloheptyl, piperidino, piperazino
  • Cyclic unsaturated hydrocarbon moiety containing more preferably 3 to 8 ring atoms.
  • saturated means the group has no carbon-carbon double and no carbon-carbon triple bonds.
  • one or more carbon-oxygen or carbon-nitrogen double bonds may be present, which may occur as part of keto-enol and imine-enamine tautomerisation respectively.
  • an alkyl group as defined herein, can be substituted or unsubstituted.
  • Substituents include, but are not limited to, one or more alkyl groups, halogen atoms, haloalkyl groups, (un)substituted aryl groups, (un)substituted heteroaryl groups, amino, oxo, nitro, cyano, azido, hydroxy, mercapto, keto, carboxy, carbamoyl, expoxy, methoxy, ethynyl.
  • alkyl contains a poly ethylene glycol (PEG) moiety
  • PEG poly ethylene glycol
  • -(EO) n — is used as an abbreviated expression for —(CH 2 CH 2 O) n — with n indicating the number of ethylene glycol groups.
  • Aralkyl refers to an alkyl group as described above, that connects to an unsubstituted or substituted aromatic or heteroaromatic hydrocarbon moiety, consisting of one or more aromatic or heteroaromatic rings with 3-8 ring atoms each.
  • Substituents for both the alkyl and aryl part include, but are not limited to, one or more halogen atoms, alkyl or haloalkyl groups, substituted or unsubstituted aryl groups, substituted or unsubstituted heteroaryl groups, amino, nitro, cyano, hydroxy, mercapto, carboxy, azido, methoxy, methylthio.
  • Aryl refers to an aryl group, which is an unsubstituted or substituted aromatic or heteroaromatic hydrocarbon moiety, consisting of one or more aromatic or heteroaromatic rings with 3-8 ring atoms each.
  • Substituents include, but are not limited to, one or more halogen atoms, haloalkyl groups, substituted or unsubstituted aryl groups, substituted or unsubstituted heteroaryl groups, amino, nitro, cyano, hydroxy, mercapto, carboxy, azido, methoxy, methylthio.
  • Acyl refers to a —C(O)-alkyl group, wherein the alkyl group is as defined above.
  • Aracyl refers to a —C(O)-aryl group, wherein the aryl group is as defined above.
  • Carbamoyl refers to a —C(O)—NH 2 group, wherein the hydrogens can independently from each other be substituted with an alkyl group, aryl group or aralkyl group, wherein alkyl group, aryl group or aralkyl group are as defined above.
  • O-acyl refers to an —O—C(O)-alkyl group, wherein the alkyl group is as defined above.
  • O-alkyl refers to an alkyl group, which is bound through an O-linkage, wherein the alkyl group is as defined above.
  • O-aracyl refers to a —O—C(O)-aryl group, wherein the aryl group is as defined above.
  • O-aralkyl refers to an aralkyl group, which is bound through an O-linkage, wherein the aralkyl group is as defined above.
  • O-aryl refers to an aryl group, which is bound through an O-linkage, wherein the aryl group is as defined above.
  • O-carbamoyl refers to a carbamoyl group, which is bound through an O-linkage, wherein the carbamoyl group is as defined above.
  • S-alkyl refers to an alkyl group, which is bound through a S-linkage, wherein the alkyl group is as defined above.
  • S-aryl refers to an aryl group, which is bound through a S-linkage, wherein the aryl group is as defined above.
  • S-aralkyl refers to an aralkyl group, which is bound through a S-linkage, wherein the aralkyl group is as defined above.
  • S-aralkyl refers to an aralkyl group, which is bound through an S-linkage, wherein the aralkyl group is as defined above.
  • Se-alkyl refers to an alkyl group, which is bound through a Se-linkage, wherein the alkyl group is as defined above.
  • Se-aryl refers to an aryl group, which is bound through a Se-linkage, wherein the aryl group is as defined above.
  • Se-aralkyl refers to an aralkyl group, which is bound through a Se-linkage, wherein the aralkyl group is as defined above.
  • NH-alkyl and N-bisalkyl refer to alkyl groups, which are bound through an N linkage, wherein the alkyl groups are as defined above.
  • NH-aryl and N-bisaryl refer to aryl groups, which are bound through an N linkage, wherein the aryl groups are as defined above.
  • NH-carbamoyl refers to a carbamoyl group, which is bound through an N-linkage, wherein the carbamoyl group is as defined above.
  • Amido-alkyl refers to an alkyl group, which is bound through a NH—C(O)— linkage, wherein the alkyl group is as defined above.
  • Amido-aryl refers to an aryl group, which is bound through a NH—C(O)— linkage, wherein the aryl group is as defined above.
  • Amido-aralkyl refers to an aralkyl group, which is bound through a NH—C(O)— linkage, wherein the aralkyl group is as defined above.
  • Endstanding group refers to a group of a particular residue (R 1 , R 4 and/or R 5 ) which is (sterically) accessible and capable for covalently binding to a particular linking residue (LR 1-4 ). This may be a group at the actual terminal end of the residue (R 1 , R 4 and/or R 5 ) or at any terminal end of any sidechain of the residue (R 1 , R 4 and/or R 5 ), or which is otherwise located in the residue (R 1 , R 4 and/or R 5 ) and sufficiently (sterically) accessible and capable for covalently binding to a particular linking residue (LR 1-4 ).
  • the definition of the term endstanding group if applicable, is independently also valid for the residues LR 5 and/or LR PEG . Further, the term terminus refers to an endstanding group which is actually a terminal end of the concerned residue.
  • a particular linking residue (LR 1-4 ) may represent a radical depending on the number of particular G units it binds to.
  • the particular linking residue (LR 1-4 ) may be a biradical, or in case it is (intermediary) bound to only one particular G unit it may be a monoradical.
  • the particular linking residue (LR 1 ) may be a biradical, triradical, or tetraradical, or in case it is (intermediary) bound to only one particular G unit it may be a monoradical.
  • divalent alkyl any organic radical that is used with the modifier “divalent” as in “divalent alkyl” then this adds a second attachment point.
  • divalent alkyl would be —CH 2 —, —CH 2 CH 2 —, —CH 2 C(CH 3 ) 2 CH 2 —.
  • bonds to ring atoms, and the molecular entities attached to such bonds are termed “axial” or “equatorial” according to whether they are located about the periphery of the ring (“equatorial”), or whether they are orientated above or below the approximate plane of the ring (“axial”). Due to the given stereochemistry of the cyclic phosphate ring, the axial position can only be above the approximate plane of the ring.
  • both R7 and R8 are oxygen, and the phosphorus double bond is “distributed or dislocated” between both atoms.
  • the compound In water at physiological pH, the compound has a negative charge between both oxygens, and a corresponding cation, such as H+ or Na+.
  • the corresponding compound structures herein are presented as charged compounds with a dislocated double bond at the phosphorus, as long as this is in accordance with valency rules. This style is chosen to account for, depict and disclose all possible “locations” of the phosphorous double bond and distribution of electron density or charge each within a single structure.
  • the dislocated double bond as used herein, depending on the nature of the particular R7 and R8, however, does not necessarily refer to an equally distributed charge or electron density between R7 and R8.
  • PLM polymer linked multimeric guanosine-3′, 5′-cyclic monophosphate (cGMP) analogue, wherein the term “multimeric” can refer to di-, tri- or tetrameric.
  • PLD polymer linked dimeric cGMP analogue
  • polymer refers to a moiety consisting of at least two (equal) units or monomers.
  • the phosphorus atom has four different ligands and becomes chiral resulting in two stereoisomeric forms.
  • Rp/Sp-nomenclature is used. Therein R/S follows the Cahn-Ingold-Prelog rules while “p” stands for phosphorus.
  • the invention relates to a compound according to the definition hereinabove, wherein in case of formula (I) G 4 is absent, or, wherein in case of formula (II) G 4 and LR 4 are absent.
  • the invention relates to a compound according to the definition hereinabove, wherein in case of formula (I) G 3 and G 4 are absent, or, wherein in case of formula (II) G 3 , G 4 , LR 3 and LR 4 are absent.
  • the invention relates to a compound according to any definition hereinabove, wherein all R 7 are O and all R 8 are OH.
  • linking residues LR 1 , LR 2 , LR 3 and LR 4 are further subdivided as depicted in formula (Ib) and (IIb),
  • coupling functions C 1 , C 1′ , C 2 , C 2′ , C 3 , C 3′ , C 4 and C 4′ independently from each other can be absent or as defined by structures selected from the group consisting of
  • the linker (L) is selected from the group consisting of
  • linking residues LR 1 , LR 2 , LR 3 and LR 4 are further subdivided as depicted in formula (Ib) and (IIb), containing spacer moieties (S 1-4 ), coupling functions (C 1-4 , C 1-4 ) and a linker (L, only multimers of structure Ib), coupling functions (C 1-4 , C 1-4 ) establish covalent bonds between
  • Coupling functions (C 1-4 , C 1′-4 ) are generated in a reaction between endstanding groups of the particular precursor parts according to well established methods of the art.
  • Non limiting examples of precursor endstanding groups (of monomeric G units and (commercially available) linkers, dyes, reporting groups and spacers) and the corresponding coupling functions (C 1-4 , C 1′-4 ), to which they are transformed within the assembled (mono- or multimeric) compound according to the invention, are as depicted in Table 1.
  • Coupling functions (C 1-4 , C 1′-4 ) can independently further be absent or be equal or individual within a particular mono- or multimeric compound.
  • FIG. 2 A non limiting example of a multimeric compound according to the invention, illustrating the used and defined variables above is given in FIG. 2 .
  • Embodiments of the invention are directed to new polymer linked multimeric guanosine-3′, 5′-cyclic monophosphate (cGMP) analogues that modulate the cGMP-signaling system, preferably having activating properties, and more preferably being activators of cGMP dependent protein kinase (PKG), and related monomeric precursors thereof.
  • the invention is also directed to related monomeric compounds, which may also show modulating activity and/or may serve as monomeric precursors of the multimers.
  • PLD polymer linked dimeric cGMP analogue
  • the PKG Iß activation potential determined for this new PLD is the strongest so far observed 1735-fold activity of cGMP) while PKG II is rather poorly activated (2.5-fold activity of cGMP).
  • this compound not only causes increased PKG I ⁇ activation but the effect is also more than 4-fold greater ( ⁇ 140-fold potential of cGMP) as determined for the best PLD agonist (PEG-spacer of 282 Da) described before.
  • PKG activation values of the compounds of the invention are expressed as multiple of the cGMP activation with the cGMP activation value set as 1 for each isozyme. It has to be noted, that the applied standard assay conditions only allowed to determine increased activation potencies of up to 140-fold for PKG I ⁇ , 2832-fold for PKG Iß and 408-fold for PKG II, which is due to the employed enzyme concentration in the assays and the phenomenon that the isozymes were activity-titrated in some cases by the highly active compounds of the invention.
  • the actual PKG activation potentials of these particular corns pounds of the invention appear to be significantly higher and are therefore expressed as ⁇ 140-fold for PKG I ⁇ , ⁇ 2832-fold for PKG Iß and ⁇ 408-fold for PKG II.
  • PLDs of the present invention feature a variety of different spacer lengths, as the results described above were also reproduced with homologues PLDs. For instance shorter spacers (19 and 8 ethylene glycol units (-(EO) 19 — and -(EO) 8 —), see Table 13, compounds 12, 5, 8, 3) gave similar results, wherein in several cases the PKG enzyme was titrated ( FIG. 3 ). As mentioned above, a titrated enzyme corresponds to a value beyond the measurement limit, indicating a very strong activation potential. The substantial major effect of nucleobase manipulation, in particular R 4 /R 5 substitution, can again be observed by comparing for instance compounds 3 and 5 ( FIG. 3 ). Therein compound 3 is identical to 5 but lacks the PET moiety.
  • the present invention comprises PLDs containing standard coupling moieties other than amide groups, as the superior activity of new PLDs according to the invention is not limited to this particular type of coupling function.
  • Dimers linked via a triazole group e.g. compound 23 with ⁇ 2832-fold activity of cGMP for PKG IR, also see FIG. 4
  • featuring no additional coupling function besides the thio ether group directly connected to the nucleobase e.g. compound 1 with 231-fold activity of cGMP for PKG II
  • two random non limiting examples of the present invention gave comparable results.
  • PLDs Another structural aspect of PLDs according to the invention concerns the linkage position at which the two cGMP analogues are coupled to each other.
  • the observed activity enhancement of PLDs is not restricted to linkage via the R 1 position. It is still present, when linkage is varied along the G unit.
  • PLDs coupled via the PET-moiety displayed a similarly increased PKG agonist potential as PET-substituted derivatives tethered via the R 1 -position (compound 6 and 23, FIG. 4 ).
  • PLDs of the invention comprise a variety of possible linking positions as defined further above.
  • spacer moiety is another motive that affects PLD induced PKG activation.
  • PEG (spacer) units used on the PLD derivatives mentioned so far can be replaced by or combined with other functionalities such as peptides or alkanes, included in the present invention.
  • Alkanes in particular, however, are restricted in size, as solubility decreases significantly with growing alkyl spacer length.
  • Still alkyl spacers with moderate size are tolerated with respect to maintaining sufficient water solubility.
  • a PKG activation screening performed with compound 16 indicated that such compounds can show an activity increasing effect (PKG II activation approx. 22-fold higher than for cGMP).
  • compound 18 is a strong activator of PKG 11 (381-fold activity of cGMP) while 6 shows virtually no increased effect on this isoform (1.3-fold activity of cGMP). Even though 6 or this type of G unit respectively therefore appears to be unable to contribute to PKG II activation, the mixed PLD hybrid 22 still is a very strong activator of PKG II (194-fold activity of cGMP).
  • the second G unit can even be a significantly less effective activator of PKG (observed for the respective homogenous PLD) while the superior PKG activation of the first G unit (again observed for the respective homogenous PLD) is substantially preserved within the mixed PLD hybrid.
  • mixed PLDs allow a much broader diversity of modifications (at one cGMP unit), while the undesired decrease of PKG activation, caused by these modifications, is much less pronounced if present at all.
  • mixed PLDs also support the design of multi target compounds. Functional groups (e.g. PET-group), intended to address different targets (e.g. different PKG isoform) apparently can be installed at one cGMP unit, giving an extended target activation spectrum of the mixed PLD.
  • the present invention also comprises the extension of the described concept of polymer linked cGMP analogues from dimers to tri- and tetramers. Therein linkage of the particular G units is accomplished either in a linear or branched fashion (see formula I and II).
  • Compounds 14 and 15 (Table 13) are two non limiting examples of the latter case, featuring particularly strong PKG II activation as predicted from analogues PLD derivatives lacking the PET-moiety ( ⁇ 416-fold activity of cGMP for compound 14).
  • the increased number of G units within tri- and tetramers results in even more diverse opportunities to combine (different) activator and target independent functionalized G units.
  • the present invention has established the first activators of PKG Iß and PKG II with PLM structure, which are furthermore significantly improved when compared to state of the art compounds.
  • PLM are also derivatives, which in addition activate PKG I ⁇ , and mixed PLM, which amongst others are beneficial for functionalization and/or addressing all three PKG isoforms.
  • Nucleobase modifications at R 4 /R 5 and R 1 position as a key part of the invention, thereby proved to be powerful modifiers of PKG activation potential. These modifications were shown herein to be able to exceed and overrule the effect of varying spacer lengths, which before was suggested to be the main effector of target selectivity and activity increase (compared to the monomer).
  • PLMs coupled via the R 1 position which overlaps with a nucleobase modification at R 1 , wherein in addition R 4 is absent and R 5 is NH 2 (according to formula III), were found to feature strongly increased PKG II activation potential (compared to the monomer).
  • Prior art PLD compounds 5 (see FIG. 1 ) also fall under the scope of this general structural paradigm, however, only by coincidence, and are expressively disclaimed from the present invention. Their appearance in the art was connected to a different question, wherein a different target (PKG I ⁇ and CNGC) was addressed and the crucial role of a different modifier (spacer length instead of nucleobase modification) was concluded.
  • the new PLM compounds of the present invention furthermore differ in and benefit from improved synthetic coupling strategies.
  • Prior art synthetic protocol for PLDs involved coupling of a thiol-group in the 8-(R 1 )position with a bifunctional PEG vinylsulfone. 5
  • the reported conditions as published later and in accordance with our own experience, however, favour addition at the 7-(R 2 ) instead of the 8-(R 1 )position.
  • various more robust, regioselective and higher yielding methods were developed for the present invention, involving for instance peptide (amid)- and click chemistry.
  • the 661W cell line was used and increase in cell death after treatment was assessed (for more details see examples section).
  • the 661W cell line is a photoreceptor precursor cell line, which expresses PKG ( FIG. 6 ). This makes them a suitable model for examining PKG activity using cell death as readout since increased PKG activity was previously associated with increased cell death.
  • 9 Results were compared to untreated cells and to incubation with 8-Br-PET-cGMP as reference.
  • 8-Br-PET-cGMP is a well established commercially available PKG activator, which has been applied in various cellular systems and is furthermore a synthetic precursor of some of the exemplary PLDs of the invention.
  • the most potent PLDs of the invention display a 5-6 fold increase in cell death when compared to untreated cells and 3-4 fold increase in cell death when compared to the reference 8-Br-PET-cGMP.
  • R 1 is selected from group consisting of H, halogen, azido, nitro, alkyl, acyl, aryl, OH, O-alkyl, O-aryl, SH, S-alkyl, S-aryl, S-aralkyl, S(O)-alkyl, S(O)-aryl, S(O)aralkyl, S(O)-benzyl, S(O) 2 -alkyl, S(O) 2 -aryl, S(O) 2 -aralkyl, amino, NH-alkyl, NH-aryl, NH-aralkyl, NR9R10, SiR13R14R15 wherein R9, R10, R13, R14, R15 are alkyl.
  • R 1 is selected from the group consisting of H, CI, Br, I, F, N 3 , NO 2 , OH, SH, NH 2 , CF 3 , 2-furyl, 3-furyl, 2-bromo-5-furyl, (2-furyl)thio, (3-(2-methyl)furyl)thio, (3-furyl)thio, 2-thienyl, 3-thienyl, (5-(1-methyl)tetrazolyl)thio, 1,1,2-trifluoro-1-butenthio, (2-(4-phenyl)imidazolyl)thio, (2-benzothiazolyl)thio, (2,6-dichlorophenoxypropyl)thio, 2-(N-(7-nitrobenz-2-oxa-1,3-diazol-4-yl)amino)ethylthio, (4-bromo-2,3-dioxobutyl)thio, [2-
  • R 1 is selected from the group consisting of H, Cl, Br, I, F, N 3 , NO 2 , OH, SH, NH 2 , CF 3 , 2-furyl, 3-furyl, (2-furyl)thio, (3-(2-methyl)furyl)thio, (3-furyl)thio, 2-thienyl, 3-thienyl, (5-(1-methyl)tetrazolyl)thio, 1,1,2-trifluoro-1-butenthio, (2-(4-phenyl)imidazolyl)thio, (2-benzothiazolyl)thio, (2,6-dichlorophenoxypropyl)thio, 2-(N-(7-nitrobenz-2-oxa-1,3-diazol-4-yl)amino)ethylthio, (4-bromo-2,3-dioxobutyl)thio, [2-[(fluoresceinylthioure
  • Q S, S(O), S(O) 2 , NH.
  • R 1 is selected from the group consisting of H, Cl, Br, SH, 2-furyl, 3-furyl, (2-furyl)thio, (3-(2-methyl)furyl)thio, (3-furyl)thio, 2-thienyl, 3-thienyl, (5-(1-methyl)tetrazolyl)thio, 1,1,2-trifluoro-1-butenthio, (2-(4-phenyl)imidazolyl)thio, (2-benzothiazolyl)thio, (2,6-dichlorophenoxypropyl)thio, 2-(N-(7-nitrobenz-2-oxa-1,3-diazol-4-yl)amino)ethylthio, (4-bromo-2,3-dioxobutyl)thio, [2-[(fluoresceinylthioureido)amino]ethyl]thio, 2,3,5,6-tetra
  • Q S.
  • R 4 is absent or selected from the group consisting of amino, N-oxide or as depicted in Table 5.
  • X 2 can be H, Ph, 2-naphtyl, 9-phenanthryl, 1-pyrenyl, 2,3-dihydro-1,4-benzodioxin-6-yl, dibenzo[b,d]furan-2-yl, 2,3-dihydro-1-benzofuran-5-yl, 1-benzothien-5-yl, 1-benzofuran-5-yl, cycopropyl, 1-adamantyl, C(Ph) 3 , 2-thienyl, 3-chloro-2-thienyl, 3-thienyl, 1,3-thiazol-2-yl, 2- pyridinyl, 5-chloro-2-thienyl, 1-benzofuran-2-yl, X 3 , X 4 and X 5 can independently be H, OH, NH, CH 3 , Cl, Br, F, CN, N 3 , CF 3 , OCF 3 , NO 2 , C(O)OH, C(
  • n 1-6.
  • R 4 is absent or selected from the group consisting of amino, N-oxide or as depicted in Table 6.
  • X 2 can be H, Ph, 2-naphtyl, 9-phenanthryl, 1-pyrenyl, 2,3-dihydro-1,4-benzodioxin-6-yl, dibenzo[b,d]furan-2-yl, 2,3-dihydro-1-benofuran-5-yl, 1-benzothien-5-yl, 1-benzofuran-5-yl, cycopropyl, 1-adamantyl, C(Ph) 3 , 2-thienyl, 3-chloro-2-thienyl, 3-thienyl, 1,3-thiazol-2-yl, 2- pyridinyl, 1-benzofuran-2-yl; X 3 , X 4 and X 5 can independently be H, OH, NH, CH 3 , Cl, Br, F, CN, N 3 , CF 3 , OCF 3 , NO 2 , C(O)OH, C(O)OCH 3 , OCH 3
  • n 1-6.
  • R 4 is absent or as depicted in Table 7.
  • X 2 can be H, Ph, 2-naphtyl, 9-phenanthryl, 1-pyrenyl, 2,3-dihydro-1,4-benzodioxin-6-yl, dibenzo[b,d]furan-2-yl, 2,3-dihydro-1-benofuran-5-yl, 1-benzothien-5-yl, 1-benzofuran-5-yl, cycopropyl, 1-adamantyl, C(Ph) 3 , 2-thienyl, 3-chloro-2-thienyl, 3-thienyl, 1,3-tiazol-2-yl, 2- pyridinyl, 1-benzofuran-2-yl; X 3 , X 4 and X 5 can independently be H, OH, NH, CH 3 , Cl, Br, F, CN, N 3 , CF 3 , OCF 3 , NO 2 , C(O)OH, C(O)OCH 3 , OCH
  • R 5 is selected from the group consisting of H, NH 2 , F, Cl, Br, I, methylamino, NH-benzyl, NH-phenyl, NH-4-azidophenyl, NH-phenylethyl, NH-phenylpropyl, 2-aminoethylamino, n-hexylamino, 6-amino-n-hexylamino, 8-amino-3,6-dioxaoctylamino, dimethylamino, 1-piperidino, 1-piperazino or can form together with R 4 , Y and the carbon bridging Y and R 5 a ring system as depicted in Table 5 (entry 2 and 3).
  • R 5 is selected from the group consisting of H, NH 2 , F, Cl, Br, I, methylamino, NH-benzyl, NH-phenyl, NH-4-azidophenyl, NH-phenylethyl, NH-phenylpropyl, 2-aminoethylamino, n-hexylamino, 6-amino-n-hexylamino, 8-amino-3,6-dioxaoctylamino, dimethylamino, 1-piperidino, 1-piperazino or can form together with R 4 , Y and the carbon bridging Y and R 5 a ring system as depicted in Table 6 (entry 2 and 3).
  • R 5 is NH 2 , or can form together with R 4 , Y and the carbon bridging Y and R 5 a ring system as depicted in Table 7 (entry 2 and 3).
  • R 7 is selected from group consisting of OH, O-alkyl, O-aryl, O-aralkyl, O-acyl, SH, S-alkyl, S-aryl, S-aralkyl, borano (BH 3 ), methylborano, dimethylborano, cyanoborano (BH 2 CN), S-PAP, O-PAP, S-BAP, or O-BAP
  • R 7 is selected from the group consisting of OH, methyloxy, ethyloxy, cyanoethyloxy, acetoxymethyloxy, pivaloyloxymethyloxy, methoxymethyloxy, propionyloxymethyloxy, butyryloxymethyloxy, acetoxyethyloxy, acetoxybutyloxy, acetoxyisobutyloxy, phenyloxy, benzyloxy, 4-acetoxybenzyloxy, 4-pivaloyloxybenzyloxy, 4-isobutyryloxybenzyloxy, 4-octanoyloxybenzyloxy, 4-benzoyloxybenzyloxy, acetyloxy, propionyloxy, benzoyloxy, SH, methylthio, acetoxymethylthio, pivaloyloxymethylthio, methoxymethylthio, propionyloxymethylthio, butyryloxymethylthio, cyanoethyl
  • R 7 is selected from the group consisting of OH, methyloxy, ethyloxy, cyanoethyloxy, acetoxymethyloxy, pivaloyloxymethyloxy, methoxymethyloxy, propionyloxymethyloxy, butyryloxymethyloxy, acetoxyethyloxy, acetoxybutyloxy, acetoxyisobutyloxy, phenyloxy, benzyloxy, 4-acetoxybenzyloxy, 4-pivaloyloxybenzyloxy, 4-isobutyryloxybenzyloxy, 4-octanoyloxybenzyloxy, 4-benzoyloxybenzyloxy, acetyloxy, propionyloxy, benzoyloxy, SH, methylthio, acetoxymethylthio, pivaloyloxymethylthio, methoxymethylthio, propionyloxymethylthio, butyryloxymethylthio, cyanoethyloxy, SH, methylthio
  • R7 is OH
  • R8 is selected from group consisting of OH, O-alkyl, O-aryl, O-aralkyl, O-acyl, O-PAP or O-BAP,
  • R8 is selected from the group consisting OH, methyloxy, ethyloxy, cyanoethyloxy, acetoxymethyloxy, pivaloyloxymethyloxy, methoxymethyloxy, propionyloxymethyloxy, butyryloxymethyloxy, acetoxyethyloxy, acetoxybutyloxy, acetoxyisobutyloxy, phenyloxy, benzyloxy, 4-acetoxybenzyloxy, 4-pivaloyloxybenzyloxy, 4-isobutyryloxybenzyloxy, 4-octanoyloxybenzyloxy, 4-benzoyloxybenzyloxy, acetyloxy, propionyloxy, benzoyloxy;
  • R8 is OH
  • residues involved in connecting a G unit with another G unit or a dye or another reporting group can be R 1 , R 4 and/or R 5 , in which case the particular residue is
  • Residues R1, R4 and R5 involved in connecting a G unit with another G unit or a dye or another reporting group (if present Q 1 connects to the G unit).
  • n 0-6;
  • m 0-6;
  • Q1 absent, S, NH, O;
  • Q2 NH, S, O, C(O), CH 2 , OC(O), NC(O);
  • Q1 absent, S, NH, O;
  • Q1 absent, S, NH, O;
  • Q2 NH, S, O, C(O), CH 2 , OC(O), NC(O);
  • residues involved in connecting a G unit with another G unit or a dye or another reporting group can be R 1 , R 4 and/or R 5 , in which case the particular residue is
  • R 1 , R 4 and R 5 involved in connecting a G unit with another G unit or a dye or another reporting group (if present Q 1 connects to the G unit)
  • Q1 S;
  • Q2 NH, S, O, CH 2 , NC(O);
  • coupling functions are absent or selected from the group depicted in Table 10.
  • coupling functions are absent or selected from the group depicted in Table 11.
  • linker (L) is absent or selected from the group depicted in Table 12.
  • n for each sidechain within a particular linker can have an equal or individual value as defined.
  • Especially preferred according to the invention are the compounds of Table 13, and as defined in claim 10 . It has to be noted that in case of doubt the chemical structure as depicted in the formula is the valid one. It further has to be noted, that the compounds of Table 13 are displayed as the free acid.
  • the present invention also comprises salts of these compounds, featuring cations such as but not limited to Na + , Li + , NH 4 + , Et 3 NH + and (i-Pr) 2 EtNH + .
  • Monomeric precursor cGMP analogues (G units) for the synthesis of polymer linked multimeric cGMP analogues (PLMs) are compounds of formula (III).
  • the PKG activation potential is strongly increased, once the monomeric precursor is linked to additional one(s) within a PLM, wherein particularly enhanced PKG isoform activation can be related to a certain extend to structural parameters.
  • Non limiting examples of methods for the transformation of monomeric precursors into exemplary PLMs are given in the examples section.
  • Table 1 gives an overview of exemplary endstanding groups, that can be used for coupling reactions and the corresponding coupling functions within the PLM, to which they are transformed according to established methods of the art.
  • the invention in one aspect also relates to monomeric compounds of formula (III) and/or monomeric precursors according to formula (III), of any compound of the invention as described herein above, wherein the monomeric compound of formula (III) and/or the monomeric precursor of formula (III) is defined in the context of any said compounds herein above, and preferably wherein the monomeric compound of formula (III) and/or monomeric precursor of formula (III) complies with the following proviso:
  • the monomeric compound of formula (III) and/or the monomeric precursor compound of formula (III) is not selected from the group of compounds consisting of
  • the monomeric compound of formula (III) and/or the monomeric precursor of the invention is selected from the group depicted in Table 14.
  • the compounds according to the present invention may further be labelled, according to well-known labelling techniques.
  • fluorescent dyes may be coupled to the compounds in order to, but not limited to, localize the intracellular distribution of cyclic nucleotide binding proteins in living cells by means of confocal microscopy, for fluorescence correlation spectrometry, for fluorescence energy transfer studies, or for determination of their concentration in living cells.
  • the compounds according to the inventions may be labelled with (radio) nuclides.
  • the person skilled in the art knows many techniques and suitable isotopes that can be used for this.
  • the invention also comprises PEGylated forms of the specified compounds, wherein PEGylation is generally known to greatly improve water solubility, pharmacokinetic and biodistribution properties.
  • the invention further comprises modifications wherein R 7 (according to formula III) can be an unsubstituted or substituted thio- or borano function. Both modifications are known in the art to improve resistance towards metabolic degradation. 1a, 14
  • the invention also comprises prodrug forms of the described compounds, wherein the negative charge of the (modified or unmodified) phosphate moiety is masked by a bioactivatable protecting group. It is widely accepted that such structures increase lipophilicity and with that, membrane-permeability and bioavailability resulting in a 10-1000 fold enhanced potency compared to the mother-compound.
  • bioactivatable protecting groups can be introduced according to well known techniques of the art and include, but are not limited to acetoxymethyl, propionyloxymethyl, butyryloxymethyl, pivaloyloxymethyl, acetoxyethyl, acetoxybutyl, acetoxyisobutyl.
  • Non limiting examples of corresponding residues R7 and/or R8 according to the invention are acetoxymethyloxy, propionyloxymethyloxy and butyryloxymethyloxy. More labile examples of protecting groups include alkyl or aryl groups as well as substituted alkyl or aryl groups.
  • Non limiting examples for chemically labile protection groups of the R7 and/or R8 position are methyl, ethyl, 2-cyanoethyl, propyl, benzyl, phenyl and polyethylene glycol. These compounds are inactive per se, but extremely membrane-permeable, leading to strongly increased intracellular concentrations. Upon hydrolysis of the ester bond, the biologically active mother compounds are released.
  • Compounds according to the invention can also feature a photolysable group (also-called “caged”- or photo-activatable protecting group), which can be introduced according to well known techniques of the art.
  • a photolysable group also-called “caged”- or photo-activatable protecting group
  • caged groups may be coupled to an R8 oxo-function, leading to compounds with significantly increased lipophilicity and bioavailability.
  • Non limiting examples for caged groups are o-nitro-benzyl, 1-(o-nitrophenyl)-ethylidene, 4,5-dimethoxy-2-nitro-benzyl, 7-dimethylaminocoumarin-4-yl (DMACM-caged), 7-diethylamino-coumarin-4-yl (DEACM-caged) and 6,7-bis(carboxymethoxy)coumarin-4-yl)methyl (BCMCM-caged).
  • DMACM-caged 7-dimethylaminocoumarin-4-yl
  • DECM-caged 7-diethylamino-coumarin-4-yl
  • BCMCM-caged 6,7-bis(carboxymethoxy)coumarin-4-yl)methyl
  • the compounds according to the present invention can also be immobilized to insoluble supports, such as, but not limited to, agarose, dextran, cellulose, starch and other carbohydrate-based polymers, to synthetic polymers such as polacrylamide, polyethyleneimine, polystyrol and similar materials, to apatite, glass, silica, gold, graphene, fullerenes, carboranes, titania, zirconia or alumina, to the surface of a chip suitable for connection with various ligands.
  • insoluble supports such as, but not limited to, agarose, dextran, cellulose, starch and other carbohydrate-based polymers, to synthetic polymers such as polacrylamide, polyethyleneimine, polystyrol and similar materials, to apatite, glass, silica, gold, graphene, fullerenes, carboranes, titania, zirconia or alumina, to the surface of a chip suitable for connection with various ligands
  • the compounds according to the present invention can also be encapsulated within nanoparticles or liposomes for directed or non-directed delivery and release purposes of the compounds as described in the literature. 11
  • the new polymer linked multimeric cGMP analogues of the invention, or the related monomeric compounds of formula (III) of the present invention, respectively, are used for treating or preventing a disease or condition that is associated with low cGMP signaling activity.
  • Diseases and conditions are preferably treated with polymer linked multimeric cGMP analogues, or the related monomeric compounds of formula (III) of the present invention, respectively, that activate the disease-related unbalanced cGMP-system, and include 1c :
  • the invention relates to a method for treating or preventing any of the above pathologies, conditions or disorders by administration of a therapeutically or prophylactically effective amount of an equatorially modified cGMP-analogue of the invention to a subject in need of prophylaxis or therapy.
  • the compounds according to the present invention can also be used as research tool compound, preferably as research tool compound in regard of a disease or disorder related to an unbalanced cGMP-system, preferably a disease or disorder selected from the group consisting of cancer, cardiovascular disease or disorder, or autoimmune disease or disorder, or neurodegenerative disease or disorder.
  • a disease or disorder related to an unbalanced cGMP-system preferably a disease or disorder selected from the group consisting of cancer, cardiovascular disease or disorder, or autoimmune disease or disorder, or neurodegenerative disease or disorder.
  • 8-Br-cGMP, 8-Br-PET-cGMP and 4-N 3 -PET-8-Br-cGMP were available from Biolog Life Science Institute (Bremen, Germany). 8-T-cGMP is established in the literature and was prepared analogously to PET-8-T-cGMP (see examples below). Solvents used were specified as analytical or hplc grade. Dimethyl sulfoxide was stored over activated molecular sieves for at least two weeks before use. Chromatographic operations were performed at ambient temperature.
  • reaction progress and purity of isolated products were determined by reversed phase hplc (RP-18, ODS-A-YMC, 120-S-11, 250 ⁇ 4 mm, 1.5 mL/min), wherein UV detection was performed either at 263 nm, an intermediate wavelength suitable to detect most cyclic GMP products and—impurities, or at the ⁇ max of the particular starting material or product.
  • Syntheses were typically performed in a 20-200 ⁇ mol scale in 2 mL polypropylene reaction vials with screw cap (reactions requiring inert gas atmosphere and/or degassing were performed in round bottom flasks (typically 10 or 25 mL)).
  • Dissolution of poorly soluble reactants was achieved through sonification or heating (70° C.) prior to addition of reagents. In case dissolution was not elicited by these techniques, which mainly applied to some cGMP analogues carrying a PET-moiety, the suspension was used. Purification of products was accomplished by preparative reversed phase hplc (RP-18, ODS-A-YMC, 12 nm-S-10, 250 ⁇ 16 mm, UV 254 nm). The eluent composition is described in the particular synthetic example and, unless stated otherwise, can be used for analytical purposes as well.
  • Desalting of products was accomplished by repeatedly freeze-drying or by preparative reversed phase hplc (RP-18, ODS-A-YMC, 12 nm-S-10, 250 ⁇ 16 mm, UV 254 nm) according to standard procedures for nucleotides. Solutions were frozen at ⁇ 70° C. for 15 min prior to evaporation, in case a speedvac concentrator was used to remove the solvent. Products were either isolated as sodium or triethylammonium salt, depending on the applied buffer. Yields refer to the fraction of isolated product featuring the reported purity.
  • aqueous phase was evaporated under reduced pressure using a rotary evaporator, the residue redissolved in water, subjected to preparative reversed phase hplc and desalted, giving the 8-thio-modified cGMP analogue.
  • N,N-diisopropylethylamine (2 eq) and the corresponding bromide (1 eq) were added successively to a solution of the 8-SH-substituted cGMP analogue (sodium or triethylammonium salt, 100 mM, 1 eq) in DMSO.
  • the reaction mixture was stirred until the thiol starting material was completely consumed or no further reaction progress was observed.
  • the solvent was removed through high vacuum evaporation with a speedvac concentrator. The residue was dissolved in water (1 mL), washed with ethyl acetate (3 ⁇ ), subjected to preparative reversed phase hplc and desalted.
  • the aqueous phase was evaporated under reduced pressure using a rotary evaporator, redissolved in water, subjected to preparative reversed phase hplc and desalted, giving the coupled cGMP analogue.
  • the less valuable reactant was added in slight excess, thus for the reaction with reversed functions the amine-substituted cGMP analogue (100 mM in DMSO, 1 eq) and the acid reactant (1.1 eq) were used.
  • N,N-diisopropylethylamine (2.2 eq) and PyBOP (1.1 eq) were added successively to a solution of the corresponding carboxylic acid-substituted cGMP analogue (100 mM in DMSO, 1 eq) and the corresponding amine (1.1 eq)*.
  • the reaction mixture was stirred until the starting material was completely consumed or no further reaction progress was observed (usually ⁇ 10 min).
  • Water (100 ⁇ L) was added, stirring was continued for 10 min and the solvent was removed through high vacuum evaporation with a speedvac concentrator.
  • Derivatives featuring a modified phosphate function, sensitive to oxidation reactions, such as a phosphorothioate, were synthesized starting from the corresponding guanosine, while the (modified) phosphate group was then introduced according to well established methods of the art (e.g. thiophosphorylation protocol 12 ) after oxidation of the 8-thio function.
  • aqueous phase was evaporated under reduced pressure using a rotary evaporator, the residue was redissolved in water/MeOH (4:1), subjected to preparative reversed phase hplc and desalted, giving the iminophosphoranyl analogue.
  • N,N-diisopropylethylamine (2 eq) was added to a solution of 4-mercaptophenylboronic acid (0.2 M, 1 eq) and Br-(EO) 5 —(CH 2 ) 2 —Br (0.5 eq) in DMF.
  • the reaction mixture was stirred until the boronic acid starting material was completely consumed or no further reaction progress was observed.
  • the solvent was removed through high vacuum evaporation with a speedvac concentrator.
  • N,N-diisopropylethylamine (2 eq) and PyBOP (1.1 eq) were added successively to a solution of the corresponding 1-carboxyalkyl-substituted cGMP analogue (10 mM in DMSO, 1 eq).
  • the reaction mixture was stirred until the cGMP analogue starting material was completely consumed or no further reaction progress was observed.
  • Water (100 ⁇ L) was added, stirring was continued for 10 min and the solvent was removed through high vacuum evaporation with a speedvac concentrator. The residue was dissolved in water (1 mL), the pH adjusted to 5-6 with NaOH (2 M) and the solution washed with ethyl acetate (5 ⁇ ).
  • the aqueous phase was evaporated under reduced pressure using a rotary evaporator, redissolved in water, subjected to preparative reversed phase hplc and desalted, giving the 1, N 2 -acyl-functionalized cGMP analogue.
  • aqueous phase was evaporated under reduced pressure using a rotary evaporator, the residue was redissolved in water, subjected to preparative reversed phase hplc and desalted, giving the 1-substituted cGMP analogue.
  • aqueous phase was evaporated under reduced pressure using a rotary evaporator, the residue was redissolved in water, subjected to preparative reversed phase hplc and desalted, giving the 1-substituted dimeric cGMP analogue.
  • HPLC (5% MeCN, 100 mM TEAF buffer, pH 6.8).
  • HPLC (9 MeCN, 20 mM TEAF buffer, pH 6.8).
  • the title compound was synthesized from 8-MPT-cGMP using general procedure F.
  • HPLC (5 MeCN, 10 mM TEAF buffer, pH 6.8).
  • HPLC (32% MeOH, 10 mM TEAF buffer, pH 6.8).
  • Ethylene glycol-bis(2-aminoethylether)-N,N,N′,N′-tetra-[(8- methylamidoethylthio)guanosine-3′,5′-cyclic monophosphate] (EG-N,N,N′,N′-tetra(8- MAmdET-cGMP))
  • EGTA Ethylene glycol-bis(2- aminoethylether)-N,N,N′,N′-tetraacetic acid
  • PET-cGMP- 8-T-(CH 2 ) 12 -T-8-cGMP-PET PET-8-T-cGMP was reacted with 1,12-dibromdodecane to give the title compound. Yield (Purity): 24% (>99%). HPLC: (36% MeCN, 20 mM TEAF buffer, pH 6.8).
  • the reaction mixture was stirred until no further reaction progress was observed ( ⁇ 10% remaining starting material).
  • the solvent was removed through high vacuum evaporation with a speedvac concentrator.
  • the residue was dissolved in MeCN/water (8:1, v/v), washed with petroleum ether (3 ⁇ ) and the aqueous phase evaporated to dryness using a rotary evaporator.
  • the crude product was dissolved in DMF (115 mM). 4,4′-Thiobisbenzenthiol (0.5 eq) and N,N-diisopropylethylamine (2.2 eq) were added successively.
  • the reactin mixture was stirred until the starting material was completely consumed.
  • the solvent was removed through high vacuum evaporation with a speedvac concentrator.
  • Monomeric precursors of the invention and/or momomeric compounds of the invention are further illustrated by the figures and examples of Table 16 describing preferred embodiments of the present invention which are, however, not intended to limit the invention in any way. Structural examples of novel compounds are depicted in the free acid form. After HPLC workup, compounds are obtained as salts of the applied buffer, but can be transformed to other salt forms or to the free acid by cation exchange according to standard procedures for nucleotides.
  • 32 8-(4-Boronatephenylthio)-guanosine-3′,5′-cyclic monophosphate (8-pB(OH) 2 PT- cGMP) Using general procedure A, 8-Br-cGMP was reacted with 4-mercaptophenylboronic acid to give the title compound. Yield (Purity): 71% (>99%).
  • 66 8-(3-Boronatephenyl)amidoethylthio-guanosine-3′,5′-cyclic monophosphate (8- mB(OH) 2 PAmdET-cGMP) Using general procedure H, 8-CET-cGMP was reacted with 3-aminophenylboronic acid to give the title compound.
  • 8-Methylpropionylthioguanosine-3′,5′-cyclic monophosphate 8-MPT-cGMP
  • 8-T-cGMP was reacted with methyl 3-bromopropionate and equivalents were increased stepwise (methyl 3-bromopropionate up to 9 eq, N,N- diisopropylethylamine up to 8 eq) to improve the yield of the title compound.
  • HPLC (15% MeOH, 10 mM TEAF buffer, pH 6.8).
  • 8-Methoxyethylamidoethylthio-guanosine-3′,5′-cyclic monophosphate (8- MeOEAmdEt-cGMP) Using general procedure H, 8-CET-cGMP was reacted with 2-methoxyethylamine to give the title compound. Yield (Purity): 65% (>99%).
  • 8-(4-Thiophenyl-4′′-thiophenylthio)guanosine-3′,5′-cyclic monophosphate (8-pTP- pTPT-cGMP) Using general procedure B, 8-Br-cGMP was reacted with 4,4′-thiobisbenzenethiol to give the title compound.
  • 8-Carboxymethylthio- ⁇ -phenyl-1,N 2 -ethenoguanosine-3′,5′-cyclic monophosphate (8-CMT-PET-cGMP) Using general procedure C, 8-Br-PET-cGMP was reacted with mercaptoacetic acid to give the title compound. Yield (Purity): 68% (>99%).
  • 8-Ethylthio- ⁇ -phenyl-1,N2-ethenoguanosine-3′,5′-cyclic monophosphate (8-ET- PET-cGMP) Using general procedure A, 8-Br-PET-cGMP (1 eq) was reacted with ethanethiol (12 eq) in a tube with screw cap at 70° C.
  • 8-Bromo-(4-methoxy- ⁇ -phenyl-1,N2-etheno)guanosine-3′,5′-cyclic monophosphate (8-Br-pMeO-PET-cGMP) Using general procedure Y, 8-Br-cGMP was reacted with 2-bromo-4′-methoxyacetophenone to give the title compound.
  • 153 ⁇ -(4-Aminophenyl)-1,N 2 -etheno-8-bromoguanosine-3′,5′-cyclic monophosphate pNH 2 -PET-8-Br-cGMP
  • the title compound was synthesized from 4-N 3 -PET-8-Br-cGMP using general procedure V. Yield (Purity): 10% (>98%).
  • 8-Bromo-(9-phenanthrenyl-1,N 2 -etheno)guanosine-3′,5′-cyclic monophosphate (8-Br-(9-Phethr)ET-cGMP) Using general procedure Y, 8-Br-cGMP was reacted with 9-(2-bromoacetyl)phenantrene to give the title compound.
  • 159 1,N 2 -Etheno-8-(2-phenylethyl)thioguanosine-3′,5′-cyclic monophosphate (ET-8- PhEtT-cGMP) Using general procedure A, 8-Br-Et-cGMP (B 177) was reacted with 2-phenyethanethiol to give the title compound.
  • PKGIß and PKGII were expressed in Sf9 cells and purified by affinity chromatography. 2 Concentrations of enzymes given below refer to the dimeric form. VASPtide (GL Biochem Ltd., Shanghai, China) was used as PKG-selective phosphorylation substrate peptide. 2
  • FIGS. 3 to 5 show that all tested PLMs produce significantly higher relative PKG activation for at least 2 of the 3 PKG isozymes compared to the reference compound cGMP. Furthermore, it has to be noted, that the applied standard assay conditions only allowed to determine increased activation potencies of up to 140-fold for PKG I ⁇ , 2832-fold for PKG Iß and 416-fold for PKG II, which is due to the employed enzyme concentration in the assays and the phenomenon that the isozymes were activity-titrated in some cases by the highly active compounds of the invention.
  • the 661W cell line was used and increase in cell death after treatment was assessed.
  • the 661W cell line is a photoreceptor precursor cell line, immortalized with the SV40 T antigen.
  • the 661W cells express PKG. This makes them a suitable model for examining PKG activity using cell death as readout since increased PKG activity was previously associated with increased cell deaths. Because of potentially complex outcomes from the activation of different PKG isoforms this analysis is interpreted as a proof of principle on the use of these compounds in PKG-expressing cells or tissues.
  • the 661W cells were cultured in DMEM with 10% FBS (Fetal Bovine Serum), 2 mM Glutamine, 100 U/ml penicillin, and 100 ⁇ g/ml streptomycin.
  • FBS Fetal Bovine Serum
  • ECM extracellular matrix
  • Ethidium Homodimer stains nuclei of dying cells.
  • microphotographs were taken from three different slides for each compound concentration and the total number of cells, as well as the number of dying Ethidium Homodimer positive cells, were counted in each picture. The value for untreated cells was set to 1. To statistically assess significant differences between untreated and treated cells, the unpaired Student's t-test was used and a P value ⁇ 0.05 was considered significant (* ⁇ 0.05, ** ⁇ 0.01, *** ⁇ 0.001).
  • FIG. 7 shows percentage of cells undergoing cell death after treatment with non limiting exemplary polymer linked dimeric cGMP analogues of the invention (12 compounds).
  • Six of the tested compounds led to significantly increased cell death at one or more concentrations when compared to untreated cells.
  • the most potent compounds of the invention display a 5-6 fold increase in cell death when compared to untreated cells and 3-4 fold increase in cell death when compared to the reference 8-Br-PET-cGMP.

Abstract

Embodiments of the invention are directed to new polymer linked multimeric guanosine-3′, 5′-cyclic monophosphate (cGMP) analogues that modulate the cGMP-signaling system, preferably having activating properties, and more preferably being activators of cGMP dependent protein kinase (PKG), and related monomeric precursors thereof. The invention is also directed to related monomeric compounds, which may also show modulating activity and/or may serve as monomeric precursors of the multimers. The invention further relates to the use of such compounds as reagents for signal transduction research and as modulators of cyclic nucleotide-regulated binding proteins and isoenzymes thereof, and as ligands for affinity chromatography, for antibody production or for diagnostic applications e.g. on chip surfaces.

Description

    FIELD OF THE INVENTION
  • The present invention relates to novel polymer linked multimers of guanosine-3′, 5′-cyclic nucleotide monophosphates, including tethered di-, tri- and tetramers and their application in the fields of medicine and pharmacy. The invention also relates to specific monomers as precursors. The invention further relates to the use of such compounds as reagents for signal transduction research and as modulators of cyclic nucleotide-regulated binding proteins and isoenzymes thereof, and as ligands for affinity chromatography, for antibody production or for diagnostic applications e.g. on chip surfaces.
  • BACKGROUND OF THE INVENTION
  • Guanosine-3′,5′-cyclic monophosphate (cGMP) is a purine nucleobase-containing cyclic nucleotide and was discovered as endogenous molecule in 1963. It is well known to act as a second messenger, wherein its intracellular level is altered as a response to (primary) signaling molecules such as toxins, hormones or nitric oxide, which in turn induces diverse cellular processes, such as gene control, chemotaxis, proliferation, differentiation, and apoptosis. Several diseases like retinal degeneration, cardiovascular diseases, asthma or diabetes are associated with unusually high or low levels of cGMP.1 The cGMP signaling cascade therefore has been recognized as a potential pharmacological target and is investigated by numerous academic groups and pharmaceutical companies. Research in this field demands for compounds that effectively modulate different targets of the said cascade. For this purpose, a number of cGMP analogues featuring cell permeability (in contrast to cGMP), enhanced activity and increased resistance to degradation by phosphodiesterases (PDE) have been established.
  • However, for the use as a drug and/or research tool cGMP analogues need to comply with a complex profile of characteristics that is unique for each biological system, to achieve a maximum effect. While applied compounds are usually selected for their ability to interfere with the main target of a studied mechanism of a disease, condition or disorder, there are always several required characteristics of a compound, that cannot be predicted and demand for testing a large set of analogues. Accordingly, for the increasing number of applications there is growing need for constantly expanding the group of available cGMP analogues with derivatives that feature another combination of characteristics as well as further improved activation potential, target specificity or multi target effects. Also tailor-made modifications such as reporting groups are desired variations for instance for research or diagnostic purposes. One of the targets addressed by cGMP and its analogues is the cGMP dependent protein kinase (PKG) from which three isoforms (Iα, Iß and II) are known. Knowledge on the identity and presence of PKG substrates in different cells, tissues and organisms is restricted. Hence the physiological as well as pathological importance of the cGMP-PKG system is not well understood, which is likely to have reduced the general understanding of cGMP-related phenomena, as well as the development of therapies in diseases and conditions where such substrates are involved. Efficient and reliable PKG activators will make it possible to address this question much more sharply than what can be currently achieved.
  • Among the PKG isoforms compounds activating PKG Iα have been explored most widely, while far less derivatives targeting Iß and even fewer interfering with PKG II are available. In fact, only a small number of compounds were reported to feature PKG II activation.2 3 For biochemical assays the most potent and predominantly applied one is 8-pCPT-cGMP. A drawback of this compound, however, is associated with the substituent in the 8-position. The 8-pCPT-moiety has been reported to induce additional off target effects besides PKG activation.4 Furthermore it is not suitable for assays involving UV light, as it is decomposed under these conditions. For some applications it is therefore desirable to have strong PKG II agonists that don't feature an 8-pCPT-group.
  • A desired selective biological effect is always also an issue of the activation potential. The less a compound activates a studied target, the larger amount of substance needs to be applied and thus the higher is the probability of off target effects such as extra cellular bindings.4 In conclusion it is favorable to use agonists with improved activation potential, reasoning a constant need for such compounds.
  • A class of PKG agonists, which could offer superior activity, are polymer linked multimers (PLM) of cGMP analogues, including di-, tri- and tetramers. This concept comprises the idea of achieving a strong enhancement of activity through addressing multiple binding sites with a single molecule. Prior to the present invention, however, the concept had only been applied once on a dimeric compounds (tri- and tetrameric analogues have not been reported). Therein, just a single type of a polymer linked dimeric cGMP (PLD), or more precisely one homologous series, differing only in the spacer length, has been disclosed. The preparation of said homologues was described as a coupling via the 8-position by reacting 8-thio cGMP with bifunctional PEG vinyl sulfones (VS-PEGn-VS) affording structures of general formula cGMP-8-S—(CH2)2—SO2-PEGn-SO2—(CH2)2—S-8-cGMP (also see FIG. 1). Dependent on the length of the (PEG) spacer these PLDs displayed an increased activation potential for either PKG Iα (up to 30-fold) or cyclic-nucleotide-gated (CNG) channels (up to 1000-fold) compared to cGMP itself. The most potent commercially available monomeric PKG Iα agonist 8-(2-NH2-Ph-S)-cGMP (8-APT-cGMP) in contrary exhibits only an about 15-fold higher activity than cGMP.6
  • Applicability of the PLM concept has been proposed for further targets,8 but no concrete methods to generate PLMs with superior activating potential for PKG isoforms Iß and II were disclosed and no further coupling strategies or synthetic protocols were reported. Particularly the synthetic access, however, comprises a drawback of the reported PLDs. Applying the published protocol, the desired compound is obtained in poor yields only as a byproduct. This outcome results from a favored addition of vinyl sulfones to the 7-position of cGMP.7 PLDs featuring a different coupling moiety, that supports a more reliable access as well as maintained or preferably increased PKG activation, are therefore needed.
  • In addition, compounds featuring a similarly increased PKG Iß and/or PKG II activation potential as described for Iα targeting PLDs above, would be valuable tools for numerous research groups. The effects on these isoforms, however, have never been studied in connection with polymer linked di-, tri- or tetramers. Accordingly it was desirable to provide polymer linked multimeric activators of PKG Iß and II, but unknown, whether the concept could be transferred to these isoforms and if, what modifications would be necessary.
  • The effect of structural manipulations at the nucleobase in context with polymer linked multimers also has not been studied before. This in turn is especially important, though, as established compounds used as biochemical tools often require customized derivatization for specific applications. Among others introduction of a reporter moiety that facilitates a certain assay read out or detection method can be desirable. Coupling of the respective compound to a fluorescent dye, for instance, is a common strategy in this context. This dye in turn allows localizing the intracellular distribution of the compound and its binding proteins in living cells by means of microscopic or spectroscopic techniques. A frequently observed drawback of strategies that involve structural manipulation of an activator, however, is the change of nature of the parent compound. Even minor modifications can result in a significant shift of target affinity and specificity or even loss of activation potential.
  • In addition, compounds, which simultaneously activate multiple targets such as two or all three PKG isoforms, could be beneficial for some applications and unsolved problems in signal transduction research.
  • Supported by the results of the only homologoues PLD series reported before (as stated above), however, the enhanced target activation of these compounds appeared to fundamentally depend on an optimum spacer length (between the cGMP units), which is unique for each addressed protein. Therefore, addressing two or more targets, with the same PLD, seemed, if feasible at all, only possible with an intermediate spacer length at which the activation potential for both targets would be significantly decreased.
  • Accordingly, there is a growing need for activators of the cGMP signaling cascade, tailor-made for individual biochemical applications, featuring superior single or multiple target activation, with or without additional functionalization that for instance facilitates specific assay read outs. To combine all these features within a single monomeric structure can be very difficult to accomplish. On such relatively small compounds each of the multiple modifications necessary can have a significant influence on the original target binding properties.
  • The situation, however, changes when it comes to multimers, wherein each desired modification can be introduced on a different cGMP unit. Thus, the respective impact on the biochemical activation profile follows different rules. PLMs offer access to a highly potent, so far rarely studied class of compounds. The challenges of transferring their potential to further targets of the cGMP signal transduction cascade (in particular PKG Iß and II) and addressing multiple targets simultaneously, while optionally featuring a reporting group, though, have not been mastered yet.
  • OBJECTIVE AND SUMMARY OF THE INVENTION
  • Therefore the achieved objective of the present invention has been to provide new polymer linked multimeric analogues of guanosine-3′,5′-cyclic monophosphate (PLMs) including di-, tri- and tetrameric derivatives, which are compared to monomeric analogues used so far, improved in terms of PKG Iß and/or PKG II activation potential. Preferably the new PLMs additionally interfere with PKG Iα, wherein it is even more preferred that the activation potential for this isoform exceeds the previously reported one for a polymer linked dimer.5 Another objective of the invention has been, to provide PKG activators, which can be functionalized (e.g. with a reporting group), while essentially maintaining their target affinity. A further objective of the invention has been to provide the new PLMs as pharmaceutically acceptable analogues for treating or diagnosing a disease, condition or disorder associated with dysregulation of a cGMP-effected cellular target, wherein additional targets can be, including, but not limited to, a hyperpolarization-activated cyclic nucleotide-gated (HCN) channel, a phosphodiesterase (PDE) and a cGMP-gated channel (CNGC). In another aspect, the objective of the invention has been to provide the new PLMs for application as research tool to identify and validate the cGMP-system in cell cultures or tissues or as a diagnostic tool. Embodiments of the invention are directed to new polymer linked multimeric guanosine-3′, 5′-cyclic monophosphate (cGMP) analogues that modulate the cGMP-signaling system, preferably having activating properties, and more preferably being activators of cGMP dependent protein kinase (PKG), and related monomeric precursors thereof.
  • Another achieved objective of the present invention has been to provide related monomeric compounds, which may serve as monomeric precursors of the multimers of the present invention and/or may also show modulating activity. Thus, another objective of the invention has been to provide related monomeric compounds as pharmaceutically acceptable analogues for treating or diagnosing a disease, condition or disorder associated with dysregulation of a cGMP-effected cellular target, wherein additional tar-gets can be, including, but not limited to, a hyperpolarization-activated cyclic nucleotide-gated (HCN) channel, a phosphodiesterase (PDE) and a cGMP-gated channel (CNGC). In another aspect, the objective of the invention has been to provide the new related monomeric compounds for application as research tool to identify and validate the cGMP-system in cell cultures or tissues or as a diagnostic tool. Embodiments of the invention are directed to new related monomeric compound analogues that modulate the cGMP-signaling system, preferably having activating properties, and more preferably being activators of cGMP dependent protein kinase (PKG).
  • BRIEF DESCRIPTION OF THE FIGURES AND FORMULAS
  • Formula I General constitution of compounds of the invention (branched and linear analogues).
  • Formula Ib More detailed illustration of Formula I.
  • Formula II General constitution of compounds of the invention (linear analogues).
  • Formula IIb More detailed illustration of Formula II.
  • Formula III General constitution of G units as discrete compounds of the invention or units of compounds according to Formula I or II.
  • Formula IV and V General constitution of G units according to Formula III, featuring exemplary imidazolinone substitution.
  • FIG. 1 Previously reported polymer linked dimeric cGMP5
  • Legend: Guanosine-3′, 5′-cyclic monophosphate-[8-thioethylsulfonyl-(ethyloxy)n-ethylsulfonylethylthio-8]-guanosine-3′, 5′-cyclic monophosphate (polydispers compound arising from synthesis with polydispers bis vinylsulfonyl-PEGn with Mw of 800 g/mol, 1.2 kg/mol, 3.4 kg/mol or 20 kg/mol; or monodispers compound with n=6).
  • FIG. 2 Example of a trimeric compound according to the invention, illustrating the used variables.
  • FIGS. 3 to 5 In vitro activation of PKG isoforms by polymer linked cGMP derivatives featuring different spacer lengths with and without PET-modification (FIG. 3), varied linking position (FIG. 4) and unequal cGMP (analogue) units with and without unequal linking positions (FIG. 5).
  • Legend: PKG isozymes Iα (0.2 nM), Iβ (0.15 nM) and II (0.5 nM) were incubated with different concentrations (10 pM to 6 μM) of compounds of the invention and cGMP as reference compound at room temperature for 60 min. The activation values of the compounds are expressed as relative PKG activation compared to cGMP with cGMP set as 1 for each kinase isozyme. The Ka-values of cGMP for half-maximal kinase activation were 28 nM for Iα, 425 nM for Iβ and 208 nM for II. Compound numbers refer to analogues displayed in Table 13.
  • FIG. 6 Expression of PKG isoforms in 661W cells.
  • Legend: RT-PCR on cDNA from mRNA extracted from 661W cell. The 661W cell line expresses the PKG isoforms Iα and II. Heart and muscle tissues were used as positive controls.
  • FIG. 7 Increased cell death in the 661W cell line after treatment with different polymer linked dimeric cGMP analogues.
  • Legend: 661W cells were exposed to compounds for 16 hours at different concentrations (1 nM to 10 μM) and percentage of dying cells was evaluated by Ethidium Homodimer assay. Untreated cells are shown as control sample (black bar). Reference compound 8-Br-PET-cGMP is shown as dashed bars. Data are presented as means±SD from at least three biological replicates. Results not including standard deviation refer to single measurements. Asterisks indicate the P value of the unpaired Student's t-test (*P≤0.05, **P≤0.01, ***P≤0.001), statistically assessing significant differences between untreated and treated cells, wherein a p value ≤0.05 was considered significant. Compound numbers refer to analogues displayed in Table 13.
  • SPECIFICATION OF STRUCTURES
  • The new polymer linked multimeric cGMP analogues of the invention are compounds having the formula (I) or (II)
  • Figure US20210317156A1-20211014-C00001
  • wherein:
  • G units G1 and G2 independently are compounds of formula (III) and G units G3 and G4 independently from G1 and G2 and independently from each other are compounds of formula (III) or absent, wherein in case of formula (II) G4 is always absent if G3 is absent,
  • Figure US20210317156A1-20211014-C00002
  • and wherein in formula (III)
  • X, Y and Z are N
  • R1, R4, R5, R7 and R8 independently can be equal or individual for each G unit (G1, G2, G3 and G4), while
      • R1 can independently be H, halogen, azido, cyano, acyl, aracyl, nitro, alkyl, aryl, aralkyl, OH, O-alkyl, O-aryl, O-aralkyl, O-acyl, O-aracyl, SH, S-alkyl, S-aryl, S-aralkyl, S-acyl, S-aracyl, S(O)alkyl, S(O)-aryl, S(O)-aralkyl, S(O)-acyl, S(O)-aracyl, S(O)2-alkyl, S(O)2-aryl, S(O)2-aralkyl, S(O)2-acyl, S(O)2-aracyl, SeH, Se-alkyl, Se-aryl, Se-aralkyl, NR9R10, SiR13R14R15 wherein R9, R10, R13, R14, R15 independently from each other can be H, alkyl, aryl, aralkyl;
      • R2 is absent;
      • R3 is OH;
      • R4 can independently be absent, H, amino, alkyl, aralkyl, nitro, N-oxide, or can form together with R3, Y and the carbon bridging Y and R3 an imidazole ring which can be unsubstituted or substituted with alkyl, aryl or aralkyl, or can form together with Y and R5 and the carbon bridging Y and R5 an imidazole ring which can be unsubstituted or substituted with alkyl, aryl or aralkyl, or can form together with Y and R5 and the carbon bridging Y and R5 an imidazolinone as depicted (structure IV, V, n=1) or an homologous ring (n=2 to 8) which each can be unsubstituted or substituted (not depicted) with alkyl, aryl or aralkyl;
  • Figure US20210317156A1-20211014-C00003
      • R5 can independently be H, halogen, NR30R31, NH-carbamoylR32R33 wherein R30, R31, R32, R33, independently from each other can be H, alkyl, aryl, aralkyl, or can form together with R4, Y and the carbon bridging Y and R5 an imidazole ring which can be unsubstituted or substituted with alkyl, aryl or aralkyl, or can form together with Ra, Y and the carbon bridging Y and R5 an imidazolinone ring as depicted (structure IV, V, n=1) or an homologous ring (n=2 to 8) which each can be unsubstituted or substituted (not depicted) with alkyl, aryl or aralkyl;
      • R6 is OH;
      • R7 is O-carbamoyl-alkyl, O-carbamoyl-aryl, O-carbamoyl-aralkyl, OH, O-alkyl, O-aryl, O-aralkyl, O-acyl, SH, S-alkyl, S-aryl, S-aralkyl, borano (BH3), methylborano, dimethylborano, cyanoborano (BH2CN), S-PAP, O-PAP, S-BAP, or O-BAP,
        • wherein PAP is a photo-activatable protecting group with non limiting examples of, optionally, PAP=o-nitro-benzyl, 1-(o-nitrophenyl)-ethylidene, 4,5-dimethoxy-2-nitrobenzyl, 7-dimethylamino-coumarin-4-yl (DMACM-caged), 7-diethylamino-coumarin-4-yl (DEACM-caged) and 6,7-bis(carboxymethoxy)coumarin-4-yl)methyl (BCMCM-caged);
        • and wherein BAP is a bio-activatable protecting group with non limiting examples of, optionally, BAP=methyl, acetoxymethyl, pivaloyloxymethyl, methoxymethyl, propionyloxymethyl, butyryloxymethyl, cyanoethyl, phenyl, benzyl, 4-acetoxybenzyl, 4-pivaloyloxybenzyl, 4-isobutyryloxybenzyl, 4-octanoyloxybenzyl, 4-benzoyloxybenzyl; and
      • R8 is O-carbamoyl-alkyl, O-carbamoyl-aryl, O-carbamoyl-aralkyl, OH, O-alkyl, O-aryl, O-aralkyl, O-acyl, O-PAP or O-BAP,
        • wherein PAP is a photo-activatable protecting group with non limiting examples of, optionally, PAP=o-nitro-benzyl, 1-(o-nitrophenyl)-ethylidene, 4,5-dimethoxy-2-nitrobenzyl, 7-dimethylamino-coumarin-4-yl (DMACM-caged), 7-diethylamino-coumarin-4-yl (DEACM-caged) and 6,7-bis(carboxymethoxy)coumarin-4-yl)methyl (BCMCM-caged);
        • and wherein BAP is a bio-activatable protecting group with non limiting examples of, optionally, BAP=methyl, acetoxymethyl, pivaloyloxymethyl, methoxymethyl, propionyloxymethyl, butyryloxymethyl, cyanoethyl, phenyl, benzyl, 4-acetoxybenzyl, 4-pivaloyloxybenzyl, 4-isobutyryloxybenzyl, 4-octanoyloxybenzyl, 4-benzoyloxybenzyl;
  • and wherein
  • linking residues LR1, LR2, LR3 and LR4 independently can replace or covalently bind to any of the particular residues R1, R4 and/or R5 of the G units (G1-4) they connect,
  • wherein in case they bind to any of the residues R1, R4 and/or R5, an endstanding group of the particular residue (R1, R4 and/or R5), as defined above, is transformed or replaced in the process of establishing the connection and is then further defined as part of the particular linking residue (LR1-4) within the assembled compound,
      • while
      • LR1 is (a) a tri- or tetravalent branched hydrocarbon moiety or (b) a divalent hydrocarbon moiety each with or without incorporated heteroatoms such as, but not limited to, O, N, S, Si, Se, B, wherein the backbone preferably contains 1 to 28 carbon atoms and can be saturated or unsaturated, substituted or unsubstituted,
        • while
        • each attachment point independently can be a substituted or unsubstituted carbon- or heteroatom
        • and
        • in case poly ethylene glycole (PEG) moieties are incorporated in accordance to the definition, the preferred number of carbon atoms can be exceeded by the number present in the PEG moieties, wherein all PEG moieties together can contain a total amount of
          • 1 to 500 ethylene glycol groups (—(CH2CH2O)n— with n=1 to 500) in case of divalent linking residue (LR1)
          • or
          • 1 to 750 ethylene glycol groups (—(CH2CH2O)n— with n=1 to 750) in case of trivalent linking residue (LR1)
          • or
          • 1 to 1000 ethylene glycol groups (—(CH2CH2O)n— with n=1 to 1000) in case of tetravalent linking residue (LR1),
        • and, if substituted,
        • substituents include, but are not limited to, optionally one or more alkyl groups, halogen atoms, haloalkyl groups, (un)substituted aryl groups, (un)substituted heteroaryl groups, amino, oxo, nitro, cyano, azido, hydroxy, mercapto, keto, carboxy, carbamoyl, expoxy, methoxy, ethynyl,
        • and/or substituents can further be connected to each other, forming a ringsystem with 1 to 4 rings, with or without incorporated heteroatoms, saturated or unsaturated, substituted or unsubstituted, aliphatic or aromatic;
      • LR2, LR3 and LR4 are divalent hydrocarbon moieties with or without incorporated heteroatoms such as, but not limited to, optionally heteroatoms O, N, S, Si, Se, B, wherein the backbone preferably contains 1 to 28 carbon atoms and can be, saturated or unsaturated, substituted or unsubstituted,
        • while
        • each attachment point independently can be a substituted or unsubstituted carbon- or heteroatom
        • and
        • in case poly ethylene glycole (PEG) moieties are incorporated in accordance to the definition, the preferred number of carbon atoms can be exceeded by the number present in the PEG moieties, wherein all PEG moieties together can contain a total amount of 1 to 500 ethylene glycol groups (—(CH2CH2O)n— with n=1 to 500)
        • and, if substituted,
        • substituents include, but are not limited to, optionally one or more alkyl groups, halogen atoms, haloalkyl groups, (un)substituted aryl groups, (un)substituted heteroaryl groups, amino, oxo, nitro, cyano, azido, hydroxy, mercapto, keto, carboxy, carbamoyl, expoxy, methoxy, ethynyl,
        • and/or substituents can further be connected to each other, forming a ringsystem with 1 to 4 rings, with or without incorporated heteroatoms, saturated or unsaturated, substituted or unsubstituted, aliphatic or aromatic;
  • wherein in case of formula (II) if G4 is absent, LR4 is absent, too, and
  • wherein in case of formula (II) if G3 and G4 are absent, LR3 and LR4 are absent, too,
  • and wherein
  • G1, G2, G3 and G4 can further be salts and/or hydrates
      • while, optionally, non limiting examples of suitable salts of the particular phosphate moiety are lithium, sodium, potassium, calcium, magnesium, zinc or ammonium, and trialkylammonium, dialkylammonium, alkylammonium, e.g., triethylammonium, trimethylammonium, diethylammonium and octylammonium;
  • and wherein
  • G1, G2, G3 and G4 can optionally be isotopically or radioactively labeled, be PEGylated, immobilized or be labeled with a dye or another reporting group,
      • wherein
      • the reporting group(s) and/or dye(s)
        • (a) are coupled to G1, G2, G3 and/or G4 via a linking residue (LR5), bound covalently to or replacing any of the particular residues R1, R4 and/or R5 independently for each G unit (G1, G2, G3 and/or G4)
          • while LR5 can be as defined for LR2
        • or
        • (b) in case of formula (I) can replace G3 and/or G4
      • and wherein
      • examples of optionally suitable dyes include, but are not limited to, fluorescent dyes such as fluorescein, anthraniloyl, N-methylanthraniloyl, dansyl or the nitro-benzofurazanyl (NBD) system, rhodamine-based dyes such as Texas Red or TAMRA, cyanine dyes such as Cy™3, Cy™5, Cy™7, EVOblue™10, EVOblue™30, EVOblue™90, EVOblue™100 (EVOblue™-family), the BODIPY™-family, Alexa Fluor™-family, the DY-family, such as DY-547P1, DY-647P1, coumarines, acridines, oxazones, phenalenones, fluorescent proteins such as GFP, BFP and YFP, and near and far infrared dyes
      • and wherein
      • reporting groups optionally include, but are not limited to, quantum dots, biotin and tyrosylmethyl ester;
      • and wherein
      • PEGylated refers to the attachment of a single or multiple LRPEG group(s) independently, wherein LRPEG can be as defined for LR2, with the provisos that in this case (i) of LR2 only one terminus is connected to a G unit (G1, G2, G3 and/or G4) by covalently binding to or replacing any of the particular residues R1, R4, and/or R5 independently for each G unit (G1, G2, G3 and/or G4), and (ii) the other terminus of LR2 is either an alkyl group or a reactive group that allows for conjugation reactions and/or hydrogen bonding
        • while, optionally, non limiting examples of reactive groups are, —NH2, —SH, —OH, —COOH, —N3, —NHS-ester, halogen group, epoxide, ethynyl, allyl
      • and with the proviso (iii) that LRPEG has incorporated ethylene glycol moieties (—(CH2CH2O)n— with n=2 to 500)
  • with the proviso that the compound of formula (I) and/or (II), is not selected from structures depicted in FIG. 1; Guanosine-3′, 5′-cyclic monophosphate-[8-thioethylsulfonyl-(ethyloxy)n-ethylsulfonylethylthio-8]-guanosine-3′, 5′-cyclic monophosphate (polydispers compound arising from synthesis with polydispers bis vinylsulfonyl-PEGn with Mw of 800 g/mol, 1.2 kg/mol, 3.4 kg/mol or 20 kg/mol; or monodispers compound with n=6).
  • In a particular embodiment, the precedingly defined compound of formula (I) and/or (II) may be a compound, wherein at least two G units are unequally substituted.
  • In another particular embodiment, the precedingly defined compound of formula (I) and/or (II) may be a compound, wherein in case of formula (I) G3 and G4 are absent, or in case of formula (II) G3, G4, LR3 and LR4 are absent; and wherein R4 is not H and/or R5 is not NH2.
  • In a particular variant embodiment, the precedingly defined compound of formula (I) and/or (II) may be a compound, wherein at least one G unit is linked via a position other than R1.
  • In a further particular embodiment, the precedingly defined compound of formula (I) and/or (II) may be a compound, wherein in case of formula (I) G3 and G4 are absent, or in case of formula (II) G3, G4, LR3 and LR4 are absent.
  • In still another particular embodiment, any of the precedingly defined compounds of formula (I) and/or (II) may be a compound, wherein all R7 are SH and all R8 are O, or all R7 are O and all R8 are OH.
  • Any reasonable combination of the before embodiments is possible, too, according to the invention.
  • Chemical Definitions
  • Listed below are the definitions of various terms and phrases used to describe the compounds of the present invention. These definitions apply to the terms as they are used throughout the specification.
  • Halogen refers to F, Cl, Br, and I.
  • Alkyl refers to an alkyl group, which is a hydrocarbon moiety with 1 to 28, preferably 1 to 20 carbon atoms, with or without (integrated) heteroatoms such as but not limited to O, S, Si, N, Se, B, wherein the point of attachment unless specified otherwise is a carbon atom. Its constitution can be
  • Linear saturated hydrocarbon moiety—including, but not limited to, methyl, ethyl, propyl, butyl and pentyl or
  • Linear unsaturated hydrocarbon moiety—containing more preferably 2 to 20 carbon atoms, including, but not limited to, ethylen, propylen, butylen and pentylen or
  • Branched saturated hydrocarbon moiety—deviating from the general alkyl definition by containing at least 3 carbon atoms and including, but not limited to, isopropyl, sec.-butyl and tert.-butyl or
  • Branched unsaturated hydrocarbon moiety—deviating from the general alkyl definition by containing at least 3 carbon atoms and including, but not limited to, isopropenyl, isobutenyl, isopentenyl and 4-methyl-3-pentenyl
  • or
  • Cyclic saturated hydrocarbon moiety—containing more preferably 3 to 8 ring atoms and including, but not limited to, cyclopentyl, cyclohexyl, cycloheptyl, piperidino, piperazino
  • or
  • Cyclic unsaturated hydrocarbon moiety—containing more preferably 3 to 8 ring atoms.
  • Herein the term saturated means the group has no carbon-carbon double and no carbon-carbon triple bonds. However, in the substituted case of saturated groups one or more carbon-oxygen or carbon-nitrogen double bonds may be present, which may occur as part of keto-enol and imine-enamine tautomerisation respectively. Independent from its constitution, an alkyl group, as defined herein, can be substituted or unsubstituted. Substituents include, but are not limited to, one or more alkyl groups, halogen atoms, haloalkyl groups, (un)substituted aryl groups, (un)substituted heteroaryl groups, amino, oxo, nitro, cyano, azido, hydroxy, mercapto, keto, carboxy, carbamoyl, expoxy, methoxy, ethynyl. In case alkyl, as defined herein, contains a poly ethylene glycol (PEG) moiety, the preferred number of carbon atoms can be exceeded by the number present in the PEG moiety, wherein the PEG moiety can contain a total amount of 1 to 500 ethylene glycol groups (—(CH2CH2O)n— with n=1 to 500).
  • It has to be noted, that -(EO)n— is used as an abbreviated expression for —(CH2CH2O)n— with n indicating the number of ethylene glycol groups. The number of ethylene glycol groups especially may be n=1-500 or as stated in the particular example.
  • Aralkyl refers to an alkyl group as described above, that connects to an unsubstituted or substituted aromatic or heteroaromatic hydrocarbon moiety, consisting of one or more aromatic or heteroaromatic rings with 3-8 ring atoms each. Substituents for both the alkyl and aryl part include, but are not limited to, one or more halogen atoms, alkyl or haloalkyl groups, substituted or unsubstituted aryl groups, substituted or unsubstituted heteroaryl groups, amino, nitro, cyano, hydroxy, mercapto, carboxy, azido, methoxy, methylthio.
  • Aryl refers to an aryl group, which is an unsubstituted or substituted aromatic or heteroaromatic hydrocarbon moiety, consisting of one or more aromatic or heteroaromatic rings with 3-8 ring atoms each. Substituents include, but are not limited to, one or more halogen atoms, haloalkyl groups, substituted or unsubstituted aryl groups, substituted or unsubstituted heteroaryl groups, amino, nitro, cyano, hydroxy, mercapto, carboxy, azido, methoxy, methylthio.
  • Acyl refers to a —C(O)-alkyl group, wherein the alkyl group is as defined above.
  • Aracyl refers to a —C(O)-aryl group, wherein the aryl group is as defined above.
  • Carbamoyl refers to a —C(O)—NH2 group, wherein the hydrogens can independently from each other be substituted with an alkyl group, aryl group or aralkyl group, wherein alkyl group, aryl group or aralkyl group are as defined above.
  • O-acyl refers to an —O—C(O)-alkyl group, wherein the alkyl group is as defined above.
  • O-alkyl refers to an alkyl group, which is bound through an O-linkage, wherein the alkyl group is as defined above.
  • O-aracyl refers to a —O—C(O)-aryl group, wherein the aryl group is as defined above.
  • O-aralkyl refers to an aralkyl group, which is bound through an O-linkage, wherein the aralkyl group is as defined above.
  • O-aryl refers to an aryl group, which is bound through an O-linkage, wherein the aryl group is as defined above.
  • O-carbamoyl refers to a carbamoyl group, which is bound through an O-linkage, wherein the carbamoyl group is as defined above.
  • S-alkyl refers to an alkyl group, which is bound through a S-linkage, wherein the alkyl group is as defined above.
  • S-aryl refers to an aryl group, which is bound through a S-linkage, wherein the aryl group is as defined above. S-aralkyl refers to an aralkyl group, which is bound through a S-linkage, wherein the aralkyl group is as defined above.
  • S-aralkyl refers to an aralkyl group, which is bound through an S-linkage, wherein the aralkyl group is as defined above.
  • Se-alkyl refers to an alkyl group, which is bound through a Se-linkage, wherein the alkyl group is as defined above. Se-aryl refers to an aryl group, which is bound through a Se-linkage, wherein the aryl group is as defined above.
  • Se-aralkyl refers to an aralkyl group, which is bound through a Se-linkage, wherein the aralkyl group is as defined above. NH-alkyl and N-bisalkyl refer to alkyl groups, which are bound through an N linkage, wherein the alkyl groups are as defined above.
  • NH-aryl and N-bisaryl refer to aryl groups, which are bound through an N linkage, wherein the aryl groups are as defined above.
  • NH-carbamoyl refers to a carbamoyl group, which is bound through an N-linkage, wherein the carbamoyl group is as defined above.
  • Amido-alkyl refers to an alkyl group, which is bound through a NH—C(O)— linkage, wherein the alkyl group is as defined above.
  • Amido-aryl refers to an aryl group, which is bound through a NH—C(O)— linkage, wherein the aryl group is as defined above.
  • Amido-aralkyl refers to an aralkyl group, which is bound through a NH—C(O)— linkage, wherein the aralkyl group is as defined above.
  • Endstanding group refers to a group of a particular residue (R1, R4 and/or R5) which is (sterically) accessible and capable for covalently binding to a particular linking residue (LR1-4). This may be a group at the actual terminal end of the residue (R1, R4 and/or R5) or at any terminal end of any sidechain of the residue (R1, R4 and/or R5), or which is otherwise located in the residue (R1, R4 and/or R5) and sufficiently (sterically) accessible and capable for covalently binding to a particular linking residue (LR1-4). The definition of the term endstanding group, if applicable, is independently also valid for the residues LR5 and/or LRPEG. Further, the term terminus refers to an endstanding group which is actually a terminal end of the concerned residue.
  • The person skilled in the art is well aware that a particular linking residue (LR1-4) may represent a radical depending on the number of particular G units it binds to. Thus, in compounds of formula (II), the particular linking residue (LR1-4) may be a biradical, or in case it is (intermediary) bound to only one particular G unit it may be a monoradical. Similarly, in case of compounds formula (I), depending on the number of particular G units it binds to, the particular linking residue (LR1) may be a biradical, triradical, or tetraradical, or in case it is (intermediary) bound to only one particular G unit it may be a monoradical.
  • If an otherwise considered monovalent group is used with the modifier “divalent” as in “divalent alkyl” then this adds a second attachment point. Non limiting examples of divalent alkyl would be —CH2—, —CH2CH2—, —CH2C(CH3)2CH2—.
  • Whenever side chains or residues are depicted as “floating groups” on a ring system, for example, in the formula:
  • Figure US20210317156A1-20211014-C00004
  • then these side chains (or residues) may replace any hydrogen atom attached to any of the ring atoms, including depicted, implied, or expressly defined hydrogen, as long as a stable structure is formed. All resulting substitution patterns are thus included. For the given example, this corresponds to
  • Figure US20210317156A1-20211014-C00005
  • The person skilled in the art understands that many compounds that fall under formula III as defined above have tautomeric forms. It has to be noted that according to this specification all tautomeric forms fall under formula III if at least one of the tautomers falls under formula III as defined above.
  • In the chair form of saturated six-membered rings, bonds to ring atoms, and the molecular entities attached to such bonds, are termed “axial” or “equatorial” according to whether they are located about the periphery of the ring (“equatorial”), or whether they are orientated above or below the approximate plane of the ring (“axial”). Due to the given stereochemistry of the cyclic phosphate ring, the axial position can only be above the approximate plane of the ring.
  • In naturally occurring cyclic nucleotide monophosphates (cNMP), both R7 and R8 are oxygen, and the phosphorus double bond is “distributed or dislocated” between both atoms. In water at physiological pH, the compound has a negative charge between both oxygens, and a corresponding cation, such as H+ or Na+. The corresponding compound structures herein are presented as charged compounds with a dislocated double bond at the phosphorus, as long as this is in accordance with valency rules. This style is chosen to account for, depict and disclose all possible “locations” of the phosphorous double bond and distribution of electron density or charge each within a single structure. The dislocated double bond, as used herein, depending on the nature of the particular R7 and R8, however, does not necessarily refer to an equally distributed charge or electron density between R7 and R8.
  • The term PLM as used herein, stands for polymer linked multimeric guanosine-3′, 5′-cyclic monophosphate (cGMP) analogue, wherein the term “multimeric” can refer to di-, tri- or tetrameric. To ease understanding of definitions and descriptions the term PLD (polymer linked dimeric cGMP analogue) is used as an equivalent to specifically refer to dimeric compounds.
  • The term polymer, as used herein, refers to a moiety consisting of at least two (equal) units or monomers.
  • If R7 and R8 are not equal, the phosphorus atom has four different ligands and becomes chiral resulting in two stereoisomeric forms. To describe the configuration of the chiral phosphorus, the Rp/Sp-nomenclature is used. Therein R/S follows the Cahn-Ingold-Prelog rules while “p” stands for phosphorus.
  • To give an example: if the equatorial residue R8 is oxygen (while axial R7 is sulphur), the corresponding cyclic guanosine-3′, 5′-monophosphorothioate compound (cGMPS-analogue) is Sp-configurated at phosphorus.
  • The person skilled in the art knows, that for the use in the field of the medicine especially as part of medicaments certainly only physiologically acceptable salts of the compounds according to the invention may be used.
  • Further Specification of Structures
  • In an embodiment the invention relates to a compound according to the definition hereinabove, wherein in case of formula (I) G4 is absent, or, wherein in case of formula (II) G4 and LR4 are absent.
  • In another embodiment the invention relates to a compound according to the definition hereinabove, wherein in case of formula (I) G3 and G4 are absent, or, wherein in case of formula (II) G3, G4, LR3 and LR4 are absent.
  • In an embodiment the invention relates to a compound according to any definition hereinabove, wherein all R7 are O and all R8 are OH.
  • According to the invention it is preferred, that linking residues LR1, LR2, LR3 and LR4 are further subdivided as depicted in formula (Ib) and (IIb),
  • Figure US20210317156A1-20211014-C00006
  • wherein:
  • coupling functions C1, C1′, C2, C2′, C3, C3′, C4 and C4′ independently from each other can be absent or as defined by structures selected from the group consisting of
  • Figure US20210317156A1-20211014-C00007
    Figure US20210317156A1-20211014-C00008
  • while connectivity can be as depicted or reversed as exemplified by
      • G1-O—C(O)—NH—S2 versus G1-NH—C(O)—O—S2
  • and wherein
  • in case the coupling function (C1, C1′, C2, C2′, C3, C3′, C4 and/or C4′) does not replace the residue of the G unit (R1, R4 and/or R5 of G1-4) but bind to it, the particular residue (R1, R4 and/or R5) involved in coupling of G units (or G unit with dye(s) or other reporting group(s)) independently from each other is as defined further above, wherein an endstanding group is replaced by or transformed to a coupling function
  • or
  • selected from the group depicted hereinafter (wherein if present, Q1 connects to the G unit)
  • Figure US20210317156A1-20211014-C00009
    n = 0-6; m = 0-6;
    Q1 = absent, S, NH, O, C(O),
    S(O), S(O)2;
    Q2 = NH, S, O, C(O), CH2,
    OC(O), NC(O);
    Figure US20210317156A1-20211014-C00010
    n = 0-4, m = 0-4
    Q1 = absent, S, NH, O, C(O),
    S(O), S(O)2;
    Figure US20210317156A1-20211014-C00011
    n1 = 0-4, n2 = 0-4, n3 = 0-4,
    Q1 = absent, S, NH, O, C(O),
    S(O), S(O)2;
    Q2 = NH, S, O, C(O), CH2,
    OC(O), NC(O);
    Figure US20210317156A1-20211014-C00012
    n = 0-4; m = 0-4;
    Q1 = absent, S, NH, O, C(O),
    S(O), S(O)2;
    Figure US20210317156A1-20211014-C00013
    n1 = 0-4, n2 = 0-4; m = 0-4;
    Q1 = absent, S, NH, O, C(O),
    S(O), S(O)2;
    Q2 = CH2, O, NH, S;
    Figure US20210317156A1-20211014-C00014
    Figure US20210317156A1-20211014-C00015
  • and wherein
  • the linker (L) is selected from the group consisting of
  • Dimeric Linkers Trimeric Linkers
    Figure US20210317156A1-20211014-C00016
    Figure US20210317156A1-20211014-C00017
    n = 0-4 n = 0-4
    Figure US20210317156A1-20211014-C00018
    Figure US20210317156A1-20211014-C00019
    X = CH2, O, NH, S, S—S, C(O); X = CH2, O, NH, S, S—S, C(O);
    n = 0-4 n = 0-4
    Figure US20210317156A1-20211014-C00020
    Figure US20210317156A1-20211014-C00021
    X = CH2, NH, O, S; X = CH2, NH, O, S;
    n = 0-4; m = 1-2 n = 0-4; m = 1-2
    Figure US20210317156A1-20211014-C00022
    Figure US20210317156A1-20211014-C00023
    n = 0-4 n = 0-4
    Figure US20210317156A1-20211014-C00024
    Figure US20210317156A1-20211014-C00025
    n = 0-4 n = 0-4
    Figure US20210317156A1-20211014-C00026
    Figure US20210317156A1-20211014-C00027
    n = 0-4 n = 0-4
    Figure US20210317156A1-20211014-C00028
    Figure US20210317156A1-20211014-C00029
    X = NH, O, S; n = 0-4; X = NH, O, S; n = 0-4;
    Figure US20210317156A1-20211014-C00030
    Figure US20210317156A1-20211014-C00031
    n = 0-6 n = 0-12
    Figure US20210317156A1-20211014-C00032
    n = 0-6
    Figure US20210317156A1-20211014-C00033
    n = 0-4
    Figure US20210317156A1-20211014-C00034
    X = O, S; n = 1-4
    Figure US20210317156A1-20211014-C00035
    X = CH, P; n = 0-4
    Figure US20210317156A1-20211014-C00036
    X = B, Si; n = 1-4
    Figure US20210317156A1-20211014-C00037
    n = 1-4 or
    Figure US20210317156A1-20211014-C00038
    n = 1-4
    Figure US20210317156A1-20211014-C00039
    Tetrameric linkers
    Figure US20210317156A1-20211014-C00040
    n = 0-4
    Figure US20210317156A1-20211014-C00041
    X = CH2, O, NH, S, S—S, C(O);
    n = 0-4 or
    Figure US20210317156A1-20211014-C00042
    X = CH2, O, NH, S, S—S, C(O);
    n = 0-4
    Figure US20210317156A1-20211014-C00043
    X = CH2, NH, O, S, C(O); n = 0-4; m = 1-2
    Figure US20210317156A1-20211014-C00044
    n = 0-4 or
    Figure US20210317156A1-20211014-C00045
    n = 0-4
    Figure US20210317156A1-20211014-C00046
    n = 0-4
    Figure US20210317156A1-20211014-C00047
    X = NH, O, S; n = 0-4;
    Figure US20210317156A1-20211014-C00048
    X = C, Si; n = 0-6 or
    Figure US20210317156A1-20211014-C00049
    m = 0-24, n = 0-6
    Figure US20210317156A1-20211014-C00050
    n = 0-6
    Figure US20210317156A1-20211014-C00051
    n = 0-4
    Figure US20210317156A1-20211014-C00052
    X = O, S; n = 1-4
    Figure US20210317156A1-20211014-C00053
    n = 0-4
    Figure US20210317156A1-20211014-C00054
    n = 1-4
    Figure US20210317156A1-20211014-C00055
    n = 1-6; m = 1-11
    Figure US20210317156A1-20211014-C00056
    X = N, CH; n = 1-6; m = 0-10
    Figure US20210317156A1-20211014-C00057
    n = 0-6
  • while
      • n for each sidechain within a particular linker of the list herebefore can have an equal or individual value as defined
      • and
      • all chiral, diastereomeric, racemic, epimeric, and all geometric isomeric forms of linkers (L) of the list herebefore, though not explicitly depicted, are included herein
      • and
      • cationic linkers (L) such as ammonium-derivatives are salts containing chloride-, bromide-, iodide- phosphate-, carbonate-, sulfate-, acetate- or any other physiologically accepted counterion
  • and wherein
  • spacers (S1, S2, S3 and S4) can be equal or individual within a particular compound, be absent or be —(CH2)n1—(CH2CH2ß)m-(CH2)n2— (with ß=O, S or NH; m=1 to 500, n1=0 to 8, n2=0 to 8, while both n1 and n2 can independently be equal or individual), or —(CH2)n— (with n=1 to 24).
  • Particularly, in the preferred embodiment of the invention, wherein it is preferred, that linking residues LR1, LR2, LR3 and LR4 are further subdivided as depicted in formula (Ib) and (IIb), containing spacer moieties (S1-4), coupling functions (C1-4, C1-4) and a linker (L, only multimers of structure Ib), coupling functions (C1-4, C1-4) establish covalent bonds between
      • the spacer and a G unit (G1-4) by connecting to or replacing any of the residues R1, R4 and/or R5 (compare formula structure III)
      • and/or
      • the spacer and a linker (L), dye or another reporting group
      • and/or
      • (in case the particular spacer is absent) a G unit (G1-4) and a dye or another reporting group by connecting to or replacing any of the residues R1, R4 and/or R5
      • and/or
      • (in case the particular spacer is absent and/or a G unit is replaced by a dye or other reporting group) the linker (L) and a dye or another reporting group or a G unit (G1-4, by connecting to or replacing any of the residues R1, R4 and/or R5).
  • Coupling functions (C1-4, C1′-4) are generated in a reaction between endstanding groups of the particular precursor parts according to well established methods of the art. Non limiting examples of precursor endstanding groups (of monomeric G units and (commercially available) linkers, dyes, reporting groups and spacers) and the corresponding coupling functions (C1-4, C1′-4), to which they are transformed within the assembled (mono- or multimeric) compound according to the invention, are as depicted in Table 1. Coupling functions (C1-4, C1′-4) can independently further be absent or be equal or individual within a particular mono- or multimeric compound.
  • TABLE 1
    Endstanding groups and corresponding coupling functions (C1-4, C1′-4′)
    (Corresponding) Coupling
    Endstanding Group of Function
    Monomeric G unit (R1, R4, R5), Spacer (C1, C1′, C2, C2′, C3, C3′, C4,
    Entry L, dye, reporting group (S1, S2, S3, S4) C4′)
    1
    Figure US20210317156A1-20211014-C00058
    Figure US20210317156A1-20211014-C00059
    Figure US20210317156A1-20211014-C00060
    2
    Figure US20210317156A1-20211014-C00061
    Figure US20210317156A1-20211014-C00062
    Figure US20210317156A1-20211014-C00063
    3
    Figure US20210317156A1-20211014-C00064
    Figure US20210317156A1-20211014-C00065
    Figure US20210317156A1-20211014-C00066
    4
    Figure US20210317156A1-20211014-C00067
    Figure US20210317156A1-20211014-C00068
    Figure US20210317156A1-20211014-C00069
    5
    Figure US20210317156A1-20211014-C00070
    Figure US20210317156A1-20211014-C00071
    Figure US20210317156A1-20211014-C00072
    6
    Figure US20210317156A1-20211014-C00073
    Figure US20210317156A1-20211014-C00074
    Figure US20210317156A1-20211014-C00075
    7
    Figure US20210317156A1-20211014-C00076
    Figure US20210317156A1-20211014-C00077
    Figure US20210317156A1-20211014-C00078
    8
    Figure US20210317156A1-20211014-C00079
    Figure US20210317156A1-20211014-C00080
    Figure US20210317156A1-20211014-C00081
    9
    Figure US20210317156A1-20211014-C00082
    Figure US20210317156A1-20211014-C00083
    Figure US20210317156A1-20211014-C00084
    Figure US20210317156A1-20211014-C00085
    Figure US20210317156A1-20211014-C00086
    10
    Figure US20210317156A1-20211014-C00087
    Figure US20210317156A1-20211014-C00088
    Figure US20210317156A1-20211014-C00089
    11
    Figure US20210317156A1-20211014-C00090
    Figure US20210317156A1-20211014-C00091
    Figure US20210317156A1-20211014-C00092
    12
    Figure US20210317156A1-20211014-C00093
    Figure US20210317156A1-20211014-C00094
    Figure US20210317156A1-20211014-C00095
    13
    Figure US20210317156A1-20211014-C00096
    Figure US20210317156A1-20211014-C00097
    Figure US20210317156A1-20211014-C00098
    14
    Figure US20210317156A1-20211014-C00099
    Figure US20210317156A1-20211014-C00100
    Figure US20210317156A1-20211014-C00101
    15
    Figure US20210317156A1-20211014-C00102
    Figure US20210317156A1-20211014-C00103
    Figure US20210317156A1-20211014-C00104
    16
    Figure US20210317156A1-20211014-C00105
    Figure US20210317156A1-20211014-C00106
    Figure US20210317156A1-20211014-C00107
    17
    Figure US20210317156A1-20211014-C00108
    Figure US20210317156A1-20211014-C00109
    Figure US20210317156A1-20211014-C00110
    18
    Figure US20210317156A1-20211014-C00111
    Figure US20210317156A1-20211014-C00112
    Figure US20210317156A1-20211014-C00113
    19
    Figure US20210317156A1-20211014-C00114
    Figure US20210317156A1-20211014-C00115
    Figure US20210317156A1-20211014-C00116
    20
    Figure US20210317156A1-20211014-C00117
    Figure US20210317156A1-20211014-C00118
    Figure US20210317156A1-20211014-C00119
    21
    Figure US20210317156A1-20211014-C00120
    Figure US20210317156A1-20211014-C00121
    Figure US20210317156A1-20211014-C00122
    X1 = Br, I X2 = alkyl, OH, O-alkyl X3 = NH, O, S
    bound to aryl, heteroaryl, X3 = NH, O, S
    alkenyl
    22
    Figure US20210317156A1-20211014-C00123
    Figure US20210317156A1-20211014-C00124
    Figure US20210317156A1-20211014-C00125
    X1 = Br, I X2 = alkyl, OH, O-alkyl X3 = NH, O, S
    bound to aryl, heteroaryl, X3 = NH, O, S
    alkenyl
    23
    Figure US20210317156A1-20211014-C00126
    Figure US20210317156A1-20211014-C00127
    Figure US20210317156A1-20211014-C00128
    X1 = Br, I X2 = alkyl, OH, O-alkyl
    bound to aryl, heteroaryl,
    alkenyl
    24
    Figure US20210317156A1-20211014-C00129
    Figure US20210317156A1-20211014-C00130
    Figure US20210317156A1-20211014-C00131
    X1 = Cl, Br, I, OTf
    bound to aryl, heteroaryl,
    alkenyl
    25
    Figure US20210317156A1-20211014-C00132
    Figure US20210317156A1-20211014-C00133
    Figure US20210317156A1-20211014-C00134
    26
    Figure US20210317156A1-20211014-C00135
    Figure US20210317156A1-20211014-C00136
    Figure US20210317156A1-20211014-C00137
    27
    Figure US20210317156A1-20211014-C00138
    Figure US20210317156A1-20211014-C00139
    Figure US20210317156A1-20211014-C00140
  • A person skilled in the art understands, that synthetic equivalents of the precursor endstanding groups of Table 1, such as but not limited to NHS esters instead of carboxylic acids or triflates instead of halogens can be used as well to generate the particular corresponding coupling function. A person skilled in the art further understands, that endstanding groups of the synthetic precursors (residues R1, R4 and/or R5, linker (L), dye, reporting group and spacer (S1-4)) can be interchanged amongst each other, resulting in reversed connectivity of the coupling function within the mono- or multimeric analogue.
  • A non limiting example of a multimeric compound according to the invention, illustrating the used and defined variables above is given in FIG. 2.
  • DETAILED DESCRIPTION OF THE INVENTION
  • Embodiments of the invention are directed to new polymer linked multimeric guanosine-3′, 5′-cyclic monophosphate (cGMP) analogues that modulate the cGMP-signaling system, preferably having activating properties, and more preferably being activators of cGMP dependent protein kinase (PKG), and related monomeric precursors thereof. The invention is also directed to related monomeric compounds, which may also show modulating activity and/or may serve as monomeric precursors of the multimers.
  • The idea of addressing more than one binding site of a target protein simultaneously with a single molecule has been reported once before using a polymer linked dimeric cGMP analogue (PLD).5 Therein a homologous series of one PLD (FIG. 1), differing only in the length of the PEG spacer, was synthesized and tested for the ability to activate cGMP-dependent protein kinase Iα (PKG Iα) and cyclic nucleotide-gated ion channels (CNG channels). The results suggested, that PLDs feature an enhanced activatory potential compared to monomeric cGMP, while this enhancement, however, fundamentally depends on an optimum spacer length (between the cGMP units), which is unique for each addressed protein. Thus with increasing deviation from this optimum spacer length the effect was reported to decrease and eventually to disappear. In particular the only studied PLD gave best PKG Iα activation with a PEG-spacer of 282 Da. The same compound carrying a PEG-spacer of 2000 Da on the other hand displayed very strong activation of CNG channels but virtually no increased effect on PKG Iα (compared to monomeric cGMP). Accordingly, addressing both PKG Iα and CNG channels (or multiple targets in general), with the same PLD, appeared, if feasible at all, only possible with an intermediate spacer length at which the activation potential for both targets would be significantly decreased. Furthermore, the impact of PLDs or other multimeric cGMP analogues on PKG isoforms Iß and II had not been studied before. In a quest to discover multimeric cGMP analogues, that would give similar results on PKG IR and/or PKG II, optionally with additional PKG Iα and/or CNGC interaction, a corresponding PLD (with a PEG 2000 Da spacer) was synthesized as part of the invention (PET-cGMP-8-TMAmd-(PEG pd 2000)AmdMT-8-cGMP-PET, Table 13, compound 13). Said compound features an amide—instead of the reported sulfonyl coupling function as well as an additional R-phenyl-1, N2-etheno (PET) function at both nucleobases. Unexpectedly, the PKG Iß activation potential determined for this new PLD is the strongest so far observed 1735-fold activity of cGMP) while PKG II is rather poorly activated (2.5-fold activity of cGMP). Very surprisingly and contrary to previously reported results of the comparable sulfonyl coupled PLD5, where superior PKG Iα activation disappeared at this spacer length, this compound not only causes increased PKG Iα activation but the effect is also more than 4-fold greater (≥140-fold potential of cGMP) as determined for the best PLD agonist (PEG-spacer of 282 Da) described before.
  • PKG activation values of the compounds of the invention are expressed as multiple of the cGMP activation with the cGMP activation value set as 1 for each isozyme. It has to be noted, that the applied standard assay conditions only allowed to determine increased activation potencies of up to 140-fold for PKG Iα, 2832-fold for PKG Iß and 408-fold for PKG II, which is due to the employed enzyme concentration in the assays and the phenomenon that the isozymes were activity-titrated in some cases by the highly active compounds of the invention. The actual PKG activation potentials of these particular corns pounds of the invention appear to be significantly higher and are therefore expressed as ≥140-fold for PKG Iα, ≥2832-fold for PKG Iß and ≥408-fold for PKG II.
  • Very surprisingly, for the analogue of compound 13 lacking the PET moiety (cGMP-8-TMAmd-(PEG pd 2000)-AmdMT-8-cGMP, Table 13, compound 10) the relative enhancement of PKG isoform activity (compared to cGMP) is almost the other way around. Thus it features the so far strongest reported PKG II activation potential (243-fold activity of cGMP) but shows a far less pronounced enhancement on relative PKG Iα and Iß activation (37-fold and 69-fold activity of cGMP). Accordingly, nucleobase manipulation of PLDs and/or variation of the coupling function, which both has not been studied before, surprisingly, overrules the so far proposed target selectivity induced by spacer length.8 5 In particular, variations at Ra and/or R5 (such as the PET moiety) and/or exchange of the sulfonyl coupling function, which overlaps with modifications of the R1 moiety, have a very significant impact on PKG activation. This was especially surprising and not foreseeable, as the monomeric precursors of the two PLD compounds, 8-Br-PET-cGMP and 8-Br-cGMP, differing only in the PET moiety, at least with respect to their PKG Iα and II activatory potential are very alike.2 Yet, as described above, when coupled to a PLD, their PKG activation profile differs significantly. Accordingly, the PKG isoform activation profile of the PLD so far cannot be predicted from the one determined for the corresponding monomers. However, as described above, structural modifications were found to be essential parameters to estimate and manipulate the increasing effects of PLDs on relative PKG isoform activation.
  • PLDs of the present invention feature a variety of different spacer lengths, as the results described above were also reproduced with homologues PLDs. For instance shorter spacers (19 and 8 ethylene glycol units (-(EO)19— and -(EO)8—), see Table 13, compounds 12, 5, 8, 3) gave similar results, wherein in several cases the PKG enzyme was titrated (FIG. 3). As mentioned above, a titrated enzyme corresponds to a value beyond the measurement limit, indicating a very strong activation potential. The substantial major effect of nucleobase manipulation, in particular R4/R5 substitution, can again be observed by comparing for instance compounds 3 and 5 (FIG. 3). Therein compound 3 is identical to 5 but lacks the PET moiety. It gives a more than 51-fold decreased relative PKG Iß activation compared to compound 5, while relative PKG II activation in turn is increased by a factor of 30. Thus, the described enhancing effect of R4/R5 transformations on relative PKG isoform activation is not restricted to a particular spacer length.
  • Furthermore, the present invention comprises PLDs containing standard coupling moieties other than amide groups, as the superior activity of new PLDs according to the invention is not limited to this particular type of coupling function. Dimers linked via a triazole group (e.g. compound 23 with ≥2832-fold activity of cGMP for PKG IR, also see FIG. 4) or featuring no additional coupling function besides the thio ether group directly connected to the nucleobase (e.g. compound 1 with 231-fold activity of cGMP for PKG II), as two random non limiting examples of the present invention, gave comparable results. Both of these optional coupling strategies as well as amide type of coupling in addition avoid regiochemical issues during synthesis, proofed to be beneficially robust and provided beneficially high yields. Furthermore, all tested PLDs linked via the R1 position at all tested spacer lengths, wherein Ra is absent and R5 is NH2 (according to formula III), were highly potent activators of PKG II.
  • Another structural aspect of PLDs according to the invention concerns the linkage position at which the two cGMP analogues are coupled to each other. The observed activity enhancement of PLDs is not restricted to linkage via the R1 position. It is still present, when linkage is varied along the G unit. Thus, as a non limiting example, PLDs coupled via the PET-moiety (at R4+R5), displayed a similarly increased PKG agonist potential as PET-substituted derivatives tethered via the R1-position (compound 6 and 23, FIG. 4). Accordingly PLDs of the invention comprise a variety of possible linking positions as defined further above.
  • The nature of the spacer moiety is another motive that affects PLD induced PKG activation. PEG (spacer) units used on the PLD derivatives mentioned so far, can be replaced by or combined with other functionalities such as peptides or alkanes, included in the present invention. Alkanes in particular, however, are restricted in size, as solubility decreases significantly with growing alkyl spacer length. Still alkyl spacers with moderate size (compounds 16, 19 and 21 as non limiting examples of the present invention) are tolerated with respect to maintaining sufficient water solubility. In addition a PKG activation screening performed with compound 16 indicated that such compounds can show an activity increasing effect (PKG II activation approx. 22-fold higher than for cGMP). This effect is less pronounced than for derivatives linked via PEG-spacers but alkyl chain tethered PLDs benefit from increased lipophilicity, which should support better cell permeability. Hence, making them useful tools for biochemical assays and for pharmacological applications.
  • As stated above, previously established and supported by the work of the inventors linkage to a second cGMP analogue unit appears to be essential to obtain significantly enhanced PKG activation. Moreover, prior to this invention just one type of PLD (FIG. 1) had been studied and its increased activation of PKG (tested only for the Iα isoform) was proposed to be connected to a simultaneous binding to homologous sites at two different PKG subunits (reasoned by the rather short observed optimal spacer length).5 It was thus not foreseeable, that mixed (heterogenous) PLDs of the invention, featuring two unequal G units (e.g. containing one PET-cGMP unit and one that lacks the PET moiety, e.g. compound 11) with different binding affinities would give a PKG (isoform) activation profile, that to a large extend resembles the characteristics of both G units in their corresponding homogenous PLDs (in the exemplary case compound 12 and 8, FIG. 5). Mixed PLDs of the invention that additionally contain mixed linking positions (e.g. PET-cGMP analogue unit linked via the R4+R5-PET-moiety and unit lacking the PET-moiety linked via the R1-position, e.g. 22) behaved similarly (FIG. 5). The latter non limiting example of mixed PLDs compound 22, which can be seen as a hybrid of the homogenous PLDs 6 and 18, particularly demonstrates the implied potential of mixed PLDs. Therein, compound 18 is a strong activator of PKG 11 (381-fold activity of cGMP) while 6 shows virtually no increased effect on this isoform (1.3-fold activity of cGMP). Even though 6 or this type of G unit respectively therefore appears to be unable to contribute to PKG II activation, the mixed PLD hybrid 22 still is a very strong activator of PKG II (194-fold activity of cGMP). These surprising results indicate, that linkage to a second cGMP (analogue) is required to obtain strongly enhanced PKG activity, the second G unit, however, does not necessarily need to be of the same kind. As described, the second G unit can even be a significantly less effective activator of PKG (observed for the respective homogenous PLD) while the superior PKG activation of the first G unit (again observed for the respective homogenous PLD) is substantially preserved within the mixed PLD hybrid.
  • These unexpected findings reveal another new great potential of (mixed) PLDs. As stated above, established effector compounds often need to be derivatized for specific biochemical applications. For instance, introduction of a fluorescent dye, to enable intracellular localization by means of microscopic or spectroscopic techniques, is a very common strategy. In order to obtain representative results, ideally such transformations, meant to facilitate assay read out, should have no impact on the target activation profile. However, these structural manipulations of the original compound frequently do result in a significant shift of target affinity and specificity or even loss of activation potential. This is especially the case, when the particular functionality can only be introduced at a pharmacophoric group or when it inhibits or weakens binding to the target protein due to steric hindrance. For applications that benefit from the use of multiple target compounds, in turn, a change in (or extension of) the target activation profile obviously can also be desirable. Developing a multi target compound, though, sometimes can be just as difficult as producing a target specific one. This is the case, whenever a modification, needed to address one target, inhibits binding to the second. Mixed PLDs as disclosed within the present invention, provide an improved solution to both of these problems. Their advantage springs from the fact, that two cGMP units (instead of one for monomers) contribute to the overall PKG activation profile. As described above, even such modifications, that would give a completely different target affinity (observed for the monomer or the homogeneous PLD), do not erase the enhanced activation characteristics of the parent compound, as long as they are performed at only one cGMP unit. In this respect, the effect of structural manipulation at a single cGMP unit is buffered within mixed PLDs. Thus, mixed PLDs allow a much broader diversity of modifications (at one cGMP unit), while the undesired decrease of PKG activation, caused by these modifications, is much less pronounced if present at all. On the other hand, mixed PLDs also support the design of multi target compounds. Functional groups (e.g. PET-group), intended to address different targets (e.g. different PKG isoform) apparently can be installed at one cGMP unit, giving an extended target activation spectrum of the mixed PLD.
  • The present invention also comprises the extension of the described concept of polymer linked cGMP analogues from dimers to tri- and tetramers. Therein linkage of the particular G units is accomplished either in a linear or branched fashion (see formula I and II). Compounds 14 and 15 (Table 13) are two non limiting examples of the latter case, featuring particularly strong PKG II activation as predicted from analogues PLD derivatives lacking the PET-moiety (≥416-fold activity of cGMP for compound 14). The increased number of G units within tri- and tetramers results in even more diverse opportunities to combine (different) activator and target independent functionalized G units. While dimeric analogues only allow linkage of an activator G unit to either another one or a target independent functionalized G unit, for tri- and tetramers both can be provided within a single compound. Accordingly, compared to PLDs, they offer a broader scope of applications.
  • In summary the present invention has established the first activators of PKG Iß and PKG II with PLM structure, which are furthermore significantly improved when compared to state of the art compounds. Among the new PLM are also derivatives, which in addition activate PKG Iα, and mixed PLM, which amongst others are beneficial for functionalization and/or addressing all three PKG isoforms. Nucleobase modifications at R4/R5 and R1 position as a key part of the invention, thereby proved to be powerful modifiers of PKG activation potential. These modifications were shown herein to be able to exceed and overrule the effect of varying spacer lengths, which before was suggested to be the main effector of target selectivity and activity increase (compared to the monomer).5,8 As an exemplary embodiment of the present invention, PLMs coupled via the R1 position, which overlaps with a nucleobase modification at R1, wherein in addition R4 is absent and R5 is NH2 (according to formula III), were found to feature strongly increased PKG II activation potential (compared to the monomer). Prior art PLD compounds5 (see FIG. 1) also fall under the scope of this general structural paradigm, however, only by coincidence, and are expressively disclaimed from the present invention. Their appearance in the art was connected to a different question, wherein a different target (PKG Iα and CNGC) was addressed and the crucial role of a different modifier (spacer length instead of nucleobase modification) was concluded. The new PLM compounds of the present invention, furthermore differ in and benefit from improved synthetic coupling strategies. Prior art synthetic protocol for PLDs involved coupling of a thiol-group in the 8-(R1)position with a bifunctional PEG vinylsulfone.5 The reported conditions, as published later and in accordance with our own experience, however, favour addition at the 7-(R2) instead of the 8-(R1)position. To replace the insufficient coupling strategy of prior art, various more robust, regioselective and higher yielding methods were developed for the present invention, involving for instance peptide (amid)- and click chemistry.
  • To test the effect of the new PKG activators of the invention in a cellular system, the 661W cell line was used and increase in cell death after treatment was assessed (for more details see examples section). The 661W cell line is a photoreceptor precursor cell line, which expresses PKG (FIG. 6). This makes them a suitable model for examining PKG activity using cell death as readout since increased PKG activity was previously associated with increased cell death.9 Results were compared to untreated cells and to incubation with 8-Br-PET-cGMP as reference. 8-Br-PET-cGMP is a well established commercially available PKG activator, which has been applied in various cellular systems and is furthermore a synthetic precursor of some of the exemplary PLDs of the invention. All 12 exemplary tested PLDs led to increased cell death at one or more concentrations when compared to untreated cells as well as the reference compound 8-Br-PET-cGMP (FIG. 7). Therein the most potent PLDs of the invention display a 5-6 fold increase in cell death when compared to untreated cells and 3-4 fold increase in cell death when compared to the reference 8-Br-PET-cGMP.
  • Compounds that are selected based on effects on 661W cells are promising tools for research studies on the intracellular signaling pathways mediated by cGMP. Such studies should not be restricted to retinal cells but also include other cell lines sensitive to changes in cGMP levels or activating cGMP targets.10
  • The present invention as summarized above and defined in the claims, which are particularly incorporated into this description by reference in their entirety, shall be exemplified in the following in more detail by preferred embodiments.
  • Preferred Compounds According to the Invention
  • According the invention it is preferred that R1 is selected from group consisting of H, halogen, azido, nitro, alkyl, acyl, aryl, OH, O-alkyl, O-aryl, SH, S-alkyl, S-aryl, S-aralkyl, S(O)-alkyl, S(O)-aryl, S(O)aralkyl, S(O)-benzyl, S(O)2-alkyl, S(O)2-aryl, S(O)2-aralkyl, amino, NH-alkyl, NH-aryl, NH-aralkyl, NR9R10, SiR13R14R15 wherein R9, R10, R13, R14, R15 are alkyl.
  • According to the invention it is further preferred that R1 is selected from the group consisting of H, CI, Br, I, F, N3, NO2, OH, SH, NH2, CF3, 2-furyl, 3-furyl, 2-bromo-5-furyl, (2-furyl)thio, (3-(2-methyl)furyl)thio, (3-furyl)thio, 2-thienyl, 3-thienyl, (5-(1-methyl)tetrazolyl)thio, 1,1,2-trifluoro-1-butenthio, (2-(4-phenyl)imidazolyl)thio, (2-benzothiazolyl)thio, (2,6-dichlorophenoxypropyl)thio, 2-(N-(7-nitrobenz-2-oxa-1,3-diazol-4-yl)amino)ethylthio, (4-bromo-2,3-dioxobutyl)thio, [2-[(fluoresceinylthioureido)amino]ethyl]thio, 2,3,5,6-tetrafluorophenylthio, (7-(4-methyl)coumarinyl)thio, (4-(7-methoxy)coumarinyl)thio, (2-naphtyl)thio, (2-(1-bromo)naphtyl)thio, benzimidazolyl-2-thiobenzothiazolylthio, 4-pyridyl, (4-pyridyl)thio, 2-pyridylthio, 5-amino-3-oxopentylamino, 8-amino-3,6-dioxaoctylamino, 19-amino-4,7,10,13,16-pentaoxanonadecylamino, 17-amino-9-aza-heptadecylamino, 4-(N-methylanthranoyl)aminobutylamino, dimethylamino, diethylamino, 4-morpholino, 1-piperidino, 1-piperazino, triphenyliminophosphoranyl or as depicted in Table 2.
  • TABLE 2
    Residue R1.
    Entry Residue
    1
    Figure US20210317156A1-20211014-C00141
    Figure US20210317156A1-20211014-C00142
    Figure US20210317156A1-20211014-C00143
    wherein
    m = 0-6.
    Q = S, S(O), S(O)2, O, NH, Se, CH2, C(O).
    X1, X2 and X3 can be equal or independently be H, OH, NH2, N3, SH, CN, NO2, F, Cl, Br, I,
    (CH2)nCH3 (with n = 0-5), i-Pr, t-Bu, (CH2)nC≡CH (with n = 0-5), (CH2)nC═CH2 (with n = 0-5),
    CH2OH, (CH2)nOCH3 (with n = 1-2), CH2N(CH3)2, O(CH2)nCH3 (with n = 0-5), Oi-Pr, OCy,
    OCyp, OBn, OC(O)CH3, OC(O)Ph, OCF3, N(CH3)2, NH(CH2)nCH3 (with n = 0-5), NHC(O)t-Bu,
    NHC(O)Ph, NHC(O)Ot-Bu, NHC(O)CH3, NHC(O)CH2N3, B(OH)2, CF3, C(O)OH, C(O)OCH3,
    C(O)Oi-Pr, C(O)Ot-Bu, C(O)OPh, C(O)OBn, C(O)NH2, C(O)N(CH3)2, C(O)NHPh, C(O)NHBn,
    C(O)CF3, CH2C(O)OH, CH2C(O)OCH3, CH2C(O)Oi-Pr, CH2C(O)Ot-Bu, CH2C(O)OBn,
    S(CH2)nCH3 (with n = 0-5), S(CH2)nOEt (with n = 1-4), SBn, SO2CH3, SO2CF3,
    Figure US20210317156A1-20211014-C00144
    (with Y1 = H, SH, CN, Ph, F, CH3, OCH3, SCH3, 4-thiophenyl, NO2, pentyl),
    Figure US20210317156A1-20211014-C00145
    (with Y2 = H, SH, F),
    Figure US20210317156A1-20211014-C00146
    (with Y3 = H, SH),
    Figure US20210317156A1-20211014-C00147
    Figure US20210317156A1-20211014-C00148
    2 or
    Figure US20210317156A1-20211014-C00149
    wherein
    m = 0-6.
    n = 1-6.
    Q = S, S(O), S(O)2, O, NH, Se.
  • According to the invention it is especially preferred that R1 is selected from the group consisting of H, Cl, Br, I, F, N3, NO2, OH, SH, NH2, CF3, 2-furyl, 3-furyl, (2-furyl)thio, (3-(2-methyl)furyl)thio, (3-furyl)thio, 2-thienyl, 3-thienyl, (5-(1-methyl)tetrazolyl)thio, 1,1,2-trifluoro-1-butenthio, (2-(4-phenyl)imidazolyl)thio, (2-benzothiazolyl)thio, (2,6-dichlorophenoxypropyl)thio, 2-(N-(7-nitrobenz-2-oxa-1,3-diazol-4-yl)amino)ethylthio, (4-bromo-2,3-dioxobutyl)thio, [2-[(fluoresceinylthioureido)amino]ethyl]thio, 2,3,5,6-tetrafluorophenylthio, (7-(4-methyl)coumarinyl)thio, (4-(7-methoxy)coumarinyl)thio, (2-naphtyl)thio, (2-(1-bromo)naphtyl)thio, benzimidazolyl-2-thio, benzothiazolylthio, 4-pyridyl, (4-pyridyl)thio, 2-pyridylthio, 5-amino-3-oxopentylamino, 8-amino-3,6-dioxaoctylamino, 19-amino-4,7,10,13,16-pentaoxanonadecylamino, 17-amino-9-aza-heptadecylamino, 4-(N-methylanthranoyl)aminobutylamino, dimethylamino, diethylamino, 4-morpholino, 1-piperidino, 1-piperazino, triphenyliminophosphoranyl or as depicted in Table 3.
  • TABLE 3
    Residue R1.
    Figure US20210317156A1-20211014-C00150
    Figure US20210317156A1-20211014-C00151
    Figure US20210317156A1-20211014-C00152
    wherein
    m = 0-6.
    Q = S, S(O), S(O)2, NH.
    X1, X2 and X3 can be equal or independently be H, OH, NH2, N3, SH, CN, NO2, F, Cl, Br, I, (CH2)nCH3
    (with n = 0-5), i-Pr, t-Bu, Ph, (CH2)nC≡CH (with n = 0-5), (CH2)nC═CH2 (with n = 0-5), CH2OH,
    (CH2)nOCH3 (with n = 1-2), CH2N(CH3)2, O(CH2)nCH3 (with n = 0-5), Oi-Pr, OCy, OCyp, OPh, OBn,
    OC(O)CH3, OC(O)Ph, OCF3, N(CH3)2, NH(CH2)nCH3 (with n = 0-5), NHC(O)t-Bu, NHC(O)Ph,
    NHC(O)Ot-Bu, NHC(O)CH3, NHC(O)CH2N3, B(OH)2, CF3, C(O)OH, C(O)OCH3, C(O)Oi-Pr,
    C(O)Ot-Bu, C(O)OPh, C(O)OBn, C(O)NH2, C(O)N(CH3)2, C(O)NHPh, C(O)NHBn, C(O)CF3,
    CH2C(O)OH, CH2C(O)OCH3, CH2C(O)Oi-Pr, CH2C(O)Ot-Bu, CH2C(O)OBn, S(CH2)nCH3 (with
    n = 0-5), S(CH2)nOEt (with n = 1-4), SBn, SPh,
    Figure US20210317156A1-20211014-C00153
    Figure US20210317156A1-20211014-C00154
    or
    Figure US20210317156A1-20211014-C00155
    wherein
    m = 0-6.
    n = 1-6.
    Q = S, S(O), S(O)2, NH.
  • According to the invention it is even more preferred that R1 is selected from the group consisting of H, Cl, Br, SH, 2-furyl, 3-furyl, (2-furyl)thio, (3-(2-methyl)furyl)thio, (3-furyl)thio, 2-thienyl, 3-thienyl, (5-(1-methyl)tetrazolyl)thio, 1,1,2-trifluoro-1-butenthio, (2-(4-phenyl)imidazolyl)thio, (2-benzothiazolyl)thio, (2,6-dichlorophenoxypropyl)thio, 2-(N-(7-nitrobenz-2-oxa-1,3-diazol-4-yl)amino)ethylthio, (4-bromo-2,3-dioxobutyl)thio, [2-[(fluoresceinylthioureido)amino]ethyl]thio, 2,3,5,6-tetrafluorophenylthio, (7-(4-methyl)coumarinyl)thio, (4-(7-methoxy)coumarinyl)thio, (2-naphtyl)thio, (2-(1-bromo)naphtyl)thio, benzimidazolyl-2-thio, benzothiazolylthio, 4-pyridyl, (4-pyridyl)thio, 2-pyridylthio, triphenyliminophosphoranyl or as depicted in Table 4.
  • TABLE 4
    Residue R1.
    Figure US20210317156A1-20211014-C00156
    Figure US20210317156A1-20211014-C00157
    Figure US20210317156A1-20211014-C00158
    wherein
    m = 0-3.
    Q = S.
    X1, X2 and X3 can be equal or independently be H, OH, NH2, N3, SH, CN, NO2, F, Cl, Br, I, (CH2)nCH3
    (with n = 0-5), i-Pr, t-Bu, Ph, (CH2)nC≡CH (with n = 0-5), (CH2)nC═CH2 (with n = 0-5), CH2OH,
    (CH2)nOCH3 (with n = 1-2), CH2N(CH3)2, O(CH2)nCH3 (with n = 0-5), Oi-Pr, OCy, OCyp, OPh, OBn,
    OC(O)CH3, OC(O)Ph, OCF3, N(CH3)2, NH(CH2)nCH3 (with n = 0-5), NHC(O)t-Bu, NHC(O)Ph,
    NHC(O)Ot-Bu, NHC(O)CH3, NHC(O)CH2N3, B(OH)2, CF3, C(O)OH, C(O)OCH3, C(O)Oi-Pr,
    C(O)Ot-Bu, C(O)OPh, C(O)OBn, C(O)NH2, C(O)N(CH3)2, C(O)NHPh, C(O)NHBn, C(O)CF3,
    CH2C(O)OH, CH2C(O)OCH3, CH2C(O)Oi-Pr, CH2C(O)Ot-Bu, CH2C(O)OBn, S(CH2)nCH3 (with
    n = 0-5), S(CH2)nOEt (with n = 1-4), SBn, SPh,
    Figure US20210317156A1-20211014-C00159
    Figure US20210317156A1-20211014-C00160
    or
    Figure US20210317156A1-20211014-C00161
    wherein
    m = 0-6.
    n = 1-6.
    Q = S.
  • In addition to the above or independent to the above it is preferred that according the invention that R4 is selected from group consisting of H, amino, alkyl, aralkyl, nitro, N-oxide or R4 can form together with Y and R5 and the carbon bridging Y and R5 an imidazole ring which can be unsubstituted or substituted with alkyl, aryl or aralkyl, or can form together with Y and R5 and the carbon bridging Y and R5 an imidazolinone as depicted above (structure IV, V, n=1) or an homologous ring (n=2 to 8) which each can be unsubstituted or substituted (not depicted) with alkyl, aryl or aralkyl.
  • According to the invention it is further preferred that R4 is absent or selected from the group consisting of amino, N-oxide or as depicted in Table 5.
  • TABLE 5
    Residue R4.
    Entry Residue
    1
    Figure US20210317156A1-20211014-C00162
    Figure US20210317156A1-20211014-C00163
    wherein
    m = 1-6.
    X1, X2 and X3 can be equal or independently be H, N3, CN, NO2, F, Cl, Br, I, (CH2)nCH3
    (with n = 0-5), i-Pr, t-Bu, (CH2)nC≡CH (with n = 0-5), (CH2)nC═CH2 (with n = 0-5), (CH2)nOCH3
    (with n = 1-2), CH2N(CH3)2, O(CH2)nCH3 (with n = 0-5), Oi-Pr, OBn, OC(O)Ph,
    OCF3, N(CH3)2, NHC(O)t-Bu, NHC(O)Ph, NHC(O)Ot-Bu, NHC(O)CH3, NHC(O)CH2N3, CF3,
    C(O)OCH3, C(O)Oi-Pr, C(O)Ot-Bu, C(O)OPh, C(O)OBn, C(O)NH2, C(O)N(CH3)2, C(O)NHPh,
    C(O)NHBn, C(O)CF3, CH2C(O)OCH3, CH2C(O)Oi-Pr, CH2C(O)Ot-Bu, CH2C(O)OBn,
    S(CH2)nCH3 (with n = 0-5), S(CH2)nOEt (with n = 1-4), SBn, SPh, SO2CF3,
    Figure US20210317156A1-20211014-C00164
    (with Y1 = H, CN, Ph, F, CH3, OCH3, SCH3, NO2, pentyl),
    Figure US20210317156A1-20211014-C00165
    (with Y2 = H, F),
    Figure US20210317156A1-20211014-C00166
    2
    Figure US20210317156A1-20211014-C00167
    Figure US20210317156A1-20211014-C00168
    wherein
    X1 can be H, CH3, Ph.
    X2 can be H, Ph, 2-naphtyl, 9-phenanthryl, 1-pyrenyl, 2,3-dihydro-1,4-benzodioxin-6-yl,
    dibenzo[b,d]furan-2-yl, 2,3-dihydro-1-benzofuran-5-yl, 1-benzothien-5-yl, 1-benzofuran-5-yl,
    cycopropyl, 1-adamantyl, C(Ph)3, 2-thienyl, 3-chloro-2-thienyl, 3-thienyl, 1,3-thiazol-2-yl, 2-
    pyridinyl, 5-chloro-2-thienyl, 1-benzofuran-2-yl,
    X3, X4 and X5 can independently be H, OH, NH, CH3, Cl, Br, F, CN, N3, CF3, OCF3, NO2,
    C(O)OH, C(O)OCH3, OCH3, OBn, O-benzoyl, SCH3, t-Bu, N(CH3)2, S-phenyl, Ph, S(O)2CH3,
    C(O)NH2, NHS(O)2CH3,
    3
    Figure US20210317156A1-20211014-C00169
    Figure US20210317156A1-20211014-C00170
    wherein deviating from the definition above, any hydrogen atom attached to any of the ring
    carbon atoms including depicted, implied, or expressly defined hydrogen, or both hydrogen
    atoms (m = 2) attached to the same particular carbon atom, can be replaced by one or two
    (equal) “floating groups” X1 respectively, as long as a stable structure is formed.
    while m = 1 or 2.
    n = 1-4.
    X1 can be H, CH3, Et, Pr, i-Pr, Bu, F, Ph, (CH2)2OH*
    *Only for first case.
    4 or
    Figure US20210317156A1-20211014-C00171
    wherein
    m = 1-6.
    n = 1-6.
  • According to the invention it is especially preferred that R4 is absent or selected from the group consisting of amino, N-oxide or as depicted in Table 6.
  • TABLE 6
    Residue R4.
    Entry Residue
    1
    Figure US20210317156A1-20211014-C00172
    Figure US20210317156A1-20211014-C00173
    wherein
    m = 1-3.
    X1, X2 and X3 can be equal or independently be H, N3, CN, NO2, F, Cl, Br, I, (CH2)nCH3
    (with n = 0-5), i-Pr, t-Bu, Ph, (CH2)nC≡CH (with n = 0-5), (CH2)nC═CH2 (with n = 0-5), (CH2)nOCH3
    (with n = 1-2), CH2N(CH3)2, O(CH2)nCH3 (with n = 0-5), Oi-Pr, OPh, OBn,
    OC(O)CH3, OC(O)Ph, OCF3, N(CH3)2, NHC(O)t-Bu, NHC(O)Ph, NHC(O)Oy-Bu,NHC(O)CH3,
    NHC(O)CH2N3, CF3, C(O)OCH3, C(O)Oi-Pr, C(O)Ot-Bu, C(O)OPh, C(O)OBn, C(O)NH2,
    C(O)N(CH3)2, C(O)NHPh, C(O)NHBn, C(O)CF3, CH2C(O)OCH3, CH2C(O)Oi-Pr,
    CH2C(O)Ot-Bu, CH2C(O)OBn, S(CH2)nCH3 (with n = 0-5), S(CH2)nOEt (with n = 1-4), SBn,
    SPh, SO2CF3,
    Figure US20210317156A1-20211014-C00174
    2
    Figure US20210317156A1-20211014-C00175
    Figure US20210317156A1-20211014-C00176
    wherein
    X1 can be H, CH3, Ph.
    X2 can be H, Ph, 2-naphtyl, 9-phenanthryl, 1-pyrenyl, 2,3-dihydro-1,4-benzodioxin-6-yl,
    dibenzo[b,d]furan-2-yl, 2,3-dihydro-1-benofuran-5-yl, 1-benzothien-5-yl, 1-benzofuran-5-yl,
    cycopropyl, 1-adamantyl, C(Ph)3, 2-thienyl, 3-chloro-2-thienyl, 3-thienyl, 1,3-thiazol-2-yl, 2-
    pyridinyl, 1-benzofuran-2-yl;
    X3, X4 and X5 can independently be H, OH, NH, CH3, Cl, Br, F, CN, N3, CF3, OCF3, NO2,
    C(O)OH, C(O)OCH3, OCH3, OBn, O-benzoyl, SCH3, t-Bu, N(CH3)2, S-phenyl, Ph, S(O)2CH3,
    C(O)NH2, NHS(O)2CH3,
    3 or
    Figure US20210317156A1-20211014-C00177
    wherein deviating from the definition above, any hydrogen atom attached to any of the ring
    carbon atoms including depicted, implied, or expressly defined hydrogen, or both hydrogen
    atoms (m = 2) attached to the same particular carbon atom, can be replaced by one or two
    (equal) “floating groups” X1 respectively, as long as a stable structure is formed.
    while m = 1 or 2.
    n = 1-4.
    X1 can be H, CH3, Et, Pr, i-Pr, Bu, F, Ph, (CH2)2OH*
    *Only for first case.
    4 or
    Figure US20210317156A1-20211014-C00178
    wherein
    m = 1-6.
    n = 1-6.
  • According to the invention it is even more preferred that R4 is absent or as depicted in Table 7.
  • TABLE 7
    Residue R4.
    Entry Residue
    1
    Figure US20210317156A1-20211014-C00179
    Figure US20210317156A1-20211014-C00180
    wherein
    m = 1-3.
    X1, X2 and X3 can be equal or independently be H, N3, CN, NO2, F, Cl, Br, I, (CH2)nCH3
    (with n = 0-5), i-Pr, t-Bu, Ph, (CH2)nC≡CH (with n = 0-5), (CH2)nC═CH2 (with n = 0-5),
    (CH2)nOCH3 (with n = 1-2), CH2N(CH3)2, O(CH2)nCH3 (with n = 0-5), Oi-Pr, OPh, OBn,
    OC(O)CH3, OC(O)Ph, OCF3, N(CH3)2, NHC(O)t-Bu, NHC(O)Ph, NHC(O)Ot-Bu, NHC(O)CH3,
    NHC(O)CH2N3, CF3, C(O)OCH3, C(O)Oi-Pr, C(O)Ot-Bu, C(O)OPh, C(O)OBn, C(O)NH2,
    C(O)N(CH3)2, C(O)NHPh, C(O)NHBn, C(O)CF3, CH2C(O)OCH3, CH2C(O)Oi-Pr,
    CH2C(O)Ot-Bu, CH2C(O)OBn, S(CH2)nCH3 (with n = 0-5), S(CH2)nOEt (with n = 1-4), SBn,
    SPh, SO2CF3,
    Figure US20210317156A1-20211014-C00181
    2 or
    Figure US20210317156A1-20211014-C00182
    Figure US20210317156A1-20211014-C00183
    wherein
    X1 can be H, CH3, Ph.
    X2 can be H, Ph, 2-naphtyl, 9-phenanthryl, 1-pyrenyl, 2,3-dihydro-1,4-benzodioxin-6-yl,
    dibenzo[b,d]furan-2-yl, 2,3-dihydro-1-benofuran-5-yl, 1-benzothien-5-yl, 1-benzofuran-5-yl,
    cycopropyl, 1-adamantyl, C(Ph)3, 2-thienyl, 3-chloro-2-thienyl, 3-thienyl, 1,3-tiazol-2-yl, 2-
    pyridinyl, 1-benzofuran-2-yl;
    X3, X4 and X5 can independently be H, OH, NH, CH3, Cl, Br, F, CN, N3, CF3, OCF3, NO2,
    C(O)OH, C(O)OCH3, OCH3, OBn, O-benzoyl, SCH3, t-Bu, N(CH3)2, S-phenyl, Ph, S(O)2CH3,
    C(O)NH2, NHS(O)2CH3,
    3 or
    Figure US20210317156A1-20211014-C00184
    wherein
    n = 1-4.
    4 or
    Figure US20210317156A1-20211014-C00185
    wherein
    m = 1-3.
    n = 1-6.
  • In addition to the above or independent to the above it is preferred that according the invention that R5 is selected from the group consisting of H, halogen, NH-carbamoyl-alkyl, NH-carbamoyl-aryl, NH-carbamoyl-aralkyl, amino, NH-alkyl, NH-aryl, NH-aralkyl, NR3OR31 wherein R30 and R31 are alkyl, or can form together with R4, Y and the carbon bridging Y and R5 an imidazole ring which can be unsubstituted or substituted with alkyl, aryl or aralkyl, or can form together with R4, Y and the carbon bridging Y and R5 an imidazolinone ring as depicted above (structure IV, V, n=1) or an homologous ring (n=2 to 8) which each can be unsubstituted or substituted (not depicted) with alkyl, aryl or aralkyl.
  • According to the invention it is further preferred that R5 is selected from the group consisting of H, NH2, F, Cl, Br, I, methylamino, NH-benzyl, NH-phenyl, NH-4-azidophenyl, NH-phenylethyl, NH-phenylpropyl, 2-aminoethylamino, n-hexylamino, 6-amino-n-hexylamino, 8-amino-3,6-dioxaoctylamino, dimethylamino, 1-piperidino, 1-piperazino or can form together with R4, Y and the carbon bridging Y and R5 a ring system as depicted in Table 5 (entry 2 and 3).
  • According to the invention it is especially preferred that R5 is selected from the group consisting of H, NH2, F, Cl, Br, I, methylamino, NH-benzyl, NH-phenyl, NH-4-azidophenyl, NH-phenylethyl, NH-phenylpropyl, 2-aminoethylamino, n-hexylamino, 6-amino-n-hexylamino, 8-amino-3,6-dioxaoctylamino, dimethylamino, 1-piperidino, 1-piperazino or can form together with R4, Y and the carbon bridging Y and R5 a ring system as depicted in Table 6 (entry 2 and 3).
  • According to the invention it is even more preferred that R5 is NH2, or can form together with R4, Y and the carbon bridging Y and R5 a ring system as depicted in Table 7 (entry 2 and 3).
  • In addition to the above or independent to the above it is preferred that according the invention that R7 is selected from group consisting of OH, O-alkyl, O-aryl, O-aralkyl, O-acyl, SH, S-alkyl, S-aryl, S-aralkyl, borano (BH3), methylborano, dimethylborano, cyanoborano (BH2CN), S-PAP, O-PAP, S-BAP, or O-BAP
      • wherein PAP is a photo-activatable protecting group with PAP=o-nitro-benzyl, 1-(o-nitrophenyl)-ethylidene, 4,5-dimethoxy-2-nitro-benzyl, 7-dimethylamino-coumarin-4-yl (DMACM-caged), 7-diethylamino-coumarin-4-yl (DEACM-caged) and 6,7-bis(carboxymethoxy)coumarin-4-yl)methyl (BCMCM-caged).
      • and wherein BAP is a bio-activatable protecting group with BAP=methyl, acetoxymethyl, pivaloyloxymethyl, methoxymethyl, propionyloxymethyl, butyryloxymethyl, cyanoethyl, phenyl, benzyl, 4-acetoxybenzyl, 4-pivaloyloxybenzyl, 4-isobutyryloxybenzyl, 4-octanoyloxybenzyl, 4-benzoyloxybenzyl.
  • According to the invention it is further preferred that R7 is selected from the group consisting of OH, methyloxy, ethyloxy, cyanoethyloxy, acetoxymethyloxy, pivaloyloxymethyloxy, methoxymethyloxy, propionyloxymethyloxy, butyryloxymethyloxy, acetoxyethyloxy, acetoxybutyloxy, acetoxyisobutyloxy, phenyloxy, benzyloxy, 4-acetoxybenzyloxy, 4-pivaloyloxybenzyloxy, 4-isobutyryloxybenzyloxy, 4-octanoyloxybenzyloxy, 4-benzoyloxybenzyloxy, acetyloxy, propionyloxy, benzoyloxy, SH, methylthio, acetoxymethylthio, pivaloyloxymethylthio, methoxymethylthio, propionyloxymethylthio, butyryloxymethylthio, cyanoethylthio, phenylthio, benzylthio, 4-acetoxybenzylthio, 4-pivaloyloxybenzylthio, 4-isobutyryloxybenzylthio, 4-octanoyloxybenzylthio, 4-benzoyloxybenzylthio, borano (BH3), methylborano, dimethylborano, cyanoborano (BH2CN).
  • According to the invention it is further more preferred that R7 is selected from the group consisting of OH, methyloxy, ethyloxy, cyanoethyloxy, acetoxymethyloxy, pivaloyloxymethyloxy, methoxymethyloxy, propionyloxymethyloxy, butyryloxymethyloxy, acetoxyethyloxy, acetoxybutyloxy, acetoxyisobutyloxy, phenyloxy, benzyloxy, 4-acetoxybenzyloxy, 4-pivaloyloxybenzyloxy, 4-isobutyryloxybenzyloxy, 4-octanoyloxybenzyloxy, 4-benzoyloxybenzyloxy, acetyloxy, propionyloxy, benzoyloxy, SH, methylthio, acetoxymethylthio, pivaloyloxymethylthio, methoxymethylthio, propionyloxymethylthio, butyryloxymethylthio, cyanoethylthio, phenylthio, benzylthio, 4-acetoxybenzylthio, 4-pivaloyloxybenzylthio, 4-isobutyryloxybenzylthio, 4-octanoyloxybenzylthio, 4-benzoyloxybenzylthio.
  • According to the invention it is even more preferred that R7 is OH.
  • In addition to the above or independent to the above it is preferred that according the invention that R8 is selected from group consisting of OH, O-alkyl, O-aryl, O-aralkyl, O-acyl, O-PAP or O-BAP,
      • wherein PAP is a photo-activatable protecting group with non limiting examples of, optionally, PAP=o-nitro-benzyl, 1-(o-nitrophenyl)-ethylidene, 4,5-dimethoxy-2-nitrobenzyl, 7-dimethylamino-coumarin-4-yl (DMACM-caged), 7-diethylamino-coumarin-4-yl (DEACM-caged) and 6,7-bis(carboxymethoxy)coumarin-4-yl)methyl (BCMCM-caged); and wherein BAP is a bio-activatable protecting group with non limiting examples of, optionally, BAP=methyl, acetoxymethyl, pivaloyloxymethyl, methoxymethyl, propionyloxymethyl, butyryloxymethyl, cyanoethyl, phenyl, benzyl, 4-acetoxybenzyl, 4-pivaloyloxybenzyl, 4-isobutyryloxybenzyl, 4-octanoyloxybenzyl, 4-benzoyloxybenzyl;
  • According to the invention it is further preferred that R8 is selected from the group consisting OH, methyloxy, ethyloxy, cyanoethyloxy, acetoxymethyloxy, pivaloyloxymethyloxy, methoxymethyloxy, propionyloxymethyloxy, butyryloxymethyloxy, acetoxyethyloxy, acetoxybutyloxy, acetoxyisobutyloxy, phenyloxy, benzyloxy, 4-acetoxybenzyloxy, 4-pivaloyloxybenzyloxy, 4-isobutyryloxybenzyloxy, 4-octanoyloxybenzyloxy, 4-benzoyloxybenzyloxy, acetyloxy, propionyloxy, benzoyloxy;
  • According to the invention it is further even more preferred that R8 is OH.
  • In addition to the above or independent to the above it is preferred that according the invention residues involved in connecting a G unit with another G unit or a dye or another reporting group can be R1, R4 and/or R5, in which case the particular residue is
      • as defined for the preferred embodiment above, wherein an endstanding group is replaced by or transformed to a coupling function
      • or
      • selected from the group depicted in Table 8 (wherein if present, Q1 connects to the G unit)
  • TABLE 8
    Residues R1, R4 and R5 involved in connecting a G unit with another
    G unit or a dye or another reporting group (if present
    Q1 connects to the G unit).
    Figure US20210317156A1-20211014-C00186
    n = 0-6; m = 0-6;
    Q1 = absent, S, NH, O;
    Q2 = NH, S, O, C(O), CH2,
    OC(O), NC(O);
    Figure US20210317156A1-20211014-C00187
    n = 0-4, m = 0-4
    Q1 = absent, S, NH, O;
    Figure US20210317156A1-20211014-C00188
    n1 = 0-4, n = 0-4, n3 = 0-4,
    Q1 = absent, S, NH, O;
    Q2 = NH, S, O, C(O), CH2,
    OC(O), NC(O);
    Figure US20210317156A1-20211014-C00189
    Figure US20210317156A1-20211014-C00190
  • According to the invention it is further preferred that residues involved in connecting a G unit with another G unit or a dye or another reporting group can be R1, R4 and/or R5, in which case the particular residue is
      • as defined for its preferred ordinary embodiment, wherein an endstanding group is replaced by or transformed to the coupling function
      • or
      • selected from the group depicted in Table 9 (wherein if present, Q1 connects to the G unit)
  • TABLE 9
    Residues R1, R4 and R5 involved in connecting a G unit with another G unit or a dye or
    another reporting group (if present Q1 connects to the G unit)
    R1 R4 R4 + R5
    Figure US20210317156A1-20211014-C00191
    Figure US20210317156A1-20211014-C00192
    Figure US20210317156A1-20211014-C00193
    Figure US20210317156A1-20211014-C00194
    Figure US20210317156A1-20211014-C00195
    Figure US20210317156A1-20211014-C00196
    Figure US20210317156A1-20211014-C00197
    n = 0-6; m = 0-6;
    Q1 = S;
    Q2 = NH, S, O, CH2, NC(O);
  • In addition to the above or independent to the above it is preferred that according the invention that coupling functions (C1-4 and C1′-4) are absent or selected from the group depicted in Table 10.
  • TABLE 10
    Coupling functions (C1-4 and C1′-4′).
    Figure US20210317156A1-20211014-C00198
    Figure US20210317156A1-20211014-C00199
    Figure US20210317156A1-20211014-C00200
    Figure US20210317156A1-20211014-C00201
    Figure US20210317156A1-20211014-C00202
    Figure US20210317156A1-20211014-C00203
    Figure US20210317156A1-20211014-C00204
    X3 = NH, O, S
    Figure US20210317156A1-20211014-C00205
    Figure US20210317156A1-20211014-C00206
    Figure US20210317156A1-20211014-C00207
    Figure US20210317156A1-20211014-C00208
    Figure US20210317156A1-20211014-C00209
    X = O, S, NH, S(O), S(O)2,
    CH2, C(O)
  • According to the invention it is further preferred that coupling functions (C1-4 and C1′-4) are absent or selected from the group depicted in Table 11.
  • TABLE 11
    Coupling functions (C1-4 and C1′-4′).
    Figure US20210317156A1-20211014-C00210
    Figure US20210317156A1-20211014-C00211
    Figure US20210317156A1-20211014-C00212
    Figure US20210317156A1-20211014-C00213
    X = O, S, NH, CH2
    Figure US20210317156A1-20211014-C00214
    Figure US20210317156A1-20211014-C00215
    Figure US20210317156A1-20211014-C00216
    Figure US20210317156A1-20211014-C00217
    Figure US20210317156A1-20211014-C00218
    X3 = NH, O, S
    Figure US20210317156A1-20211014-C00219
  • In addition to the above or independent to the above it is preferred that according the invention the linker (L) is absent or selected from the group depicted in Table 12.
  • TABLE 12
    Linker (L).
    Figure US20210317156A1-20211014-C00220
    n = 0-4
    Figure US20210317156A1-20211014-C00221
    n = 0-6
    Figure US20210317156A1-20211014-C00222
    n = 0-4
    Figure US20210317156A1-20211014-C00223
    n = 0-12
    Figure US20210317156A1-20211014-C00224
    n = 0-6
    Figure US20210317156A1-20211014-C00225
    X = O, S; n = 1-4
    Figure US20210317156A1-20211014-C00226
    X = B, Si; n = 1-4
    Figure US20210317156A1-20211014-C00227
    X = N, CH; n = 1-6; m = 0-10
    Figure US20210317156A1-20211014-C00228
    n = 0-4
    Figure US20210317156A1-20211014-C00229
    X = C, Si; n = 0-6
    or
    Figure US20210317156A1-20211014-C00230
    m = 0-24, n = 0-6
    Figure US20210317156A1-20211014-C00231
    n = 0-6
    Figure US20210317156A1-20211014-C00232
    X = O, S; n = 1-4
    Figure US20210317156A1-20211014-C00233
    n = 1-4
    Figure US20210317156A1-20211014-C00234
    n = 1-6; m = 1-11
  • While n for each sidechain within a particular linker can have an equal or individual value as defined.
  • In addition to the above or independent to the above it is preferred that in case of formula (I) according to the invention G4 or G4 and G3 are absent
      • or in case of formula (II) G4 and LR4 or G4, LR4, G3 and LR3 are absent.
  • According to the invention it is even more preferred that in case of formula (I) G4 and G3 are absent
      • or in case of formula (II) G4, LR4, G3 and LR3 are absent.
  • Particularly preferred embodiments of the invention based on the above exemplifications, are as defined in anyone of the claims 6, 7, 8 and 9.
  • Especially preferred according to the invention are the compounds of Table 13, and as defined in claim 10. It has to be noted that in case of doubt the chemical structure as depicted in the formula is the valid one. It further has to be noted, that the compounds of Table 13 are displayed as the free acid. The present invention, however, also comprises salts of these compounds, featuring cations such as but not limited to Na+, Li+, NH4 +, Et3NH+ and (i-Pr)2EtNH+.
  • TABLE 13
    Structures of novel compounds according to the invention.
    # Compound Structure
    1 Guanosine-3′,5'-cyclic monophosphate-[8-thio- (pentaethoxy)-ethylthio-8]- guanosine-3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00235
    2 Guanosine-3′,5′-cyclic monophosphate-[8- thiomethylamidomethyl- (pentaethoxy)- propylamidomethylthio-8]- guanosine-3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00236
    3 Guanosine-3′,5′-cyclic monophosphate-[8- thiomethylamido-(octaethoxy)- ethylamidomethylthio-8]- guanosine-3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00237
    4 Guanosine-3′,5′-cyclic monophosphate-[8-(4- thiophenylthio)-(pentaethoxy)- ethyl-(4-thiophenylthio)-8]- guanosine-3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00238
    5 β-Phenyl-1, N2-ethenoguanosine- 3′,5′-cyclic monophosphate-[8- thiomethylamido-(octaethoxy)- ethylamidomethylthio-8]-β-phenyl- 1, N2-ethenoguanosine-3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00239
    6 8-Bromoguanosine-3′,5′-cyclic monophosphate-[1, N2-etheno-β- phenyl-4-yl-(1-[1,2,3]-triazole- 4-yl)-methoxy-(hexaethoxy)- methyl-(4-(4-[1,2,3]-triazole-1- yl)-β-phenyl-1, N2-etheno)]-8- bromoguanosine-3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00240
    7 Guanosine-3′,5′-cyclic monophosphate-[8- thiomethylamido-(octaethoxy)- ethylamidomethylthio-8]-β-phenyl- 1, N2-ethenoguanosine-3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00241
    8 Guanosine-3′,5′-cyclic monophosphate-[8- thiomethylamido- (nonadecaethoxy)- ethylamidomethylthio-8]- guanosine-3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00242
    9 Guanosine-3′,5′-cyclic monophosphate-[8-(1-[1,2,3]- triazole-4-yl)-methoxy- (hexaethoxy)-methyl-(4-[1,2,3]- triazole-1-yl)-8]-guanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00243
    10 Guanosine-3′,5′-cyclic monophosphate-[8- thiomethylamido-(PEG pd 2000)- amidomethylthio-8]-guanosine-3′, 5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00244
    11 β-Phenyl-1, N2-ethenoguanosine- 3′,5′-cyclic monophosphate-[8- thiomethylamido- (nonadecaethoxy)- ethylamidomethylthio-8]- guanosine-3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00245
    12 β-Phenyl-1, N2-ethenoguanosine- 3′,5′-cyclic monophosphate-[8- thiomethylamido- (nonadecaethoxy)- ethylamidomethylthio-8]-β-phenyl- 1, N2-ethenoguanosine-3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00246
    13 β-Phenyl-1, N2-ethenoguanosine- 3′,5′-cyclic monophosphate-[8- thiomethylamido-(PEG pd 2000)- amidomethylthio-8]-β-phenyl-1, N2-ethenoguanosine-3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00247
    14 Benzene-1,3,5-tri-[(8- amidomethyl-(pentaethoxy)- propylamidomethylthio)guanosine- 3′,5′-cyclic monophosphate]
    Figure US20210317156A1-20211014-C00248
    15 Ethylene glycol-bis(2- aminoethylether)-N,N,N',N'-tetra- [(8- methylamidoethylthio)guanosine-3′, 5′-cyclic monophosphate]
    Figure US20210317156A1-20211014-C00249
    16 Guanosine-3′,5′-cyclic monophosphate-[8-thio- (dodecanyl)-thio-8]-guanosine-3′, 5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00250
    17 β-Phenyl-1, N2-ethenoguanosine- 3′,5′-cyclic monophosphate-[8- thio-(dodecanyl)-thio-8]-β- phenyl-1, N2-ethenoguanosine-3′, 5′-cyclic monophosphate, triethyl ammonium salt
    Figure US20210317156A1-20211014-C00251
    18 Guanosine-3′,5′-cyclic monophosphate-[8- thioethylamidomethyl-(1-[1,2,3]- triazole-4-yl)-methoxy- (hexaethoxy)-methyl-(4-[1,2,3]- triazole-1-yl)- methylamidoethylthio-8]- guanosine-3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00252
    19 Guanosine-3′,5′-cyclic monophosphate-[8-thioethylthio- 8]-guanosine-3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00253
    20 Guanosine-3′,5′-cyclic monophosphate-[8-thioethyl-(1- [1,2,3]-triazole-4-yl)-methoxy- (hexaethoxy)-methyl-(4-[1,2,3]- triazole-1-yl)-ethylthio-8]- guanosine-3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00254
    21 Guanosine-3′,5′-cyclic monophosphate-[8-thio- (dodecanyl)-(4-thiophenyl-4″- thiophenylthio)-(dodecanyl)-thio- 8]-guanosine-3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00255
    22 Guanosine-3′,5′-cyclic monophosphate-[8- thioethylamidomethyl-(1-[1,2,3]- triazole-4-yl)-methoxy- (hexaethoxy)-methyl-(4-(4-[1,2, 3]-triazole-1-yl)-β-phenyl-1, N2- etheno)]-8-bromoguanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00256
    23 β-Phenyl-1, N2-ethenoguanosine- 3′,5′-cyclic monophosphate-[8- thioethyl-(1-[1,2,3]-triazole-4- yl)-methoxy-(hexaethoxy)-methyl- (4-[1,2,3]-triazole-1-yl)- ethylthio-8]-β-phenyl-1, N2- ethenoguanosine-3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00257
    24 8-Bromoguanosine-3′,5′-cyclic monophosphate-[1- propylamidomethyl-(pentaethoxy)- propylamidomethylthio-8]-β- phenyl-1, N2-ethenoguanosine-3′, 5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00258
    25 8-Bromoguanosine-3′,5′-cyclic monophosphate-[1-(pentaethoxy)- ethyl-1]-8-bromoguanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00259
    26 8-Bromoguanosine-3′,5′-cyclic monophosphate-[1- propylamidomethyl-(pentaethoxy)- propylamidopropyl-1]-8- bromoguanosine-3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00260
    27 8-Bromoguanosine-3′,5′-cyclic monophosphate-[1- propylamidomethyl-(pentaethoxy)- propylamidomethylthio-8]- guanosine-3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00261
    28 Guanosine-3′,5′-cyclic monophosphate-[8-(phenyl-4- thio)-(pentaethoxy)-ethyl-(4- thiophenyl)-8]-guanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00262
    29 β-1, N2-Acetyl-guanosine-3′,5′- cyclic monophosphate-[8- thiomethylamido-(octaethoxy)- ethylamidomethylthio-8]-β-1,N2- acetyl-guanosine-3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00263
    30 8-Phenylguanosine-3′,5′-cyclic monophosphate-[1, N2-etheno-(3- phenyl-4-yl-(1-[1,2,3]-triazole- 4-yl)-methoxy-(hexaethoxy)- methyl-(4-(4-[1,2,3]-triazole-1- yl)-β-phenyl-1, N2-etheno)]-8- phenylguanosine-3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00264
  • Monomeric precursor cGMP analogues (G units) for the synthesis of polymer linked multimeric cGMP analogues (PLMs) are compounds of formula (III). As described above, the PKG activation potential is strongly increased, once the monomeric precursor is linked to additional one(s) within a PLM, wherein particularly enhanced PKG isoform activation can be related to a certain extend to structural parameters. Non limiting examples of methods for the transformation of monomeric precursors into exemplary PLMs are given in the examples section. In addition Table 1 gives an overview of exemplary endstanding groups, that can be used for coupling reactions and the corresponding coupling functions within the PLM, to which they are transformed according to established methods of the art.
  • The invention in one aspect also relates to monomeric compounds of formula (III) and/or monomeric precursors according to formula (III), of any compound of the invention as described herein above, wherein the monomeric compound of formula (III) and/or the monomeric precursor of formula (III) is defined in the context of any said compounds herein above, and preferably wherein the monomeric compound of formula (III) and/or monomeric precursor of formula (III) complies with the following proviso:
      • R7 is O and R5 is OH
  • and further complies with at least one of the following provisos:
      • R4 is not H and R5 is NH2
        • wherein R4 is attached via a —CH2— bridge, which is part of R4
      • or
      • R5 together with R4, Y and the carbon bridging Y and R5 form a ring system, which can be
        • a) an imidazolinone ring as depicted hereinafter (n=1) or an homologous ring (n=2 to 8)
  • Figure US20210317156A1-20211014-C00265
        • b) an imidazole ring, which can be unsubstituted or substituted as depicted hereinafter as residue entry 1 and 2
          • residue entry 1
  • Figure US20210317156A1-20211014-C00266
          • wherein
          • X1 is H;
          • X2 can be H, 2-naphtyl, 9-phenanthryl, 1-pyrenyl, 2,3-dihydro-1,4-benzodioxin-6-yl, dibenzo[b,d]furan-2-yl, 2,3-dihydro-1-benzofuran-5-yl, 1-benzothien-5-yl, 1-benzofuran-5-yl, cyclopropyl, 1-adamantyl, C(Ph)3, 2-thienyl, 3-chloro-2-thienyl, 3-thienyl, 1,3-thiazol-2-yl, 2-pyridinyl, 5-chloro-2-thienyl, 1-benzofuran-2-yl;
          • X3, X4 and X5 can independently be OH, NH, CH3, Cl, Br, F, CN, N3, CF3, OCF3, NO2, C(O)OH, C(O)OCH3, OCH3, OBn, O-benzoyl, SCH3, t-Bu, N(CH3)2, S-phenyl, Ph, S(O)2CH3, C(O)NH2, NHS(O)2CH3, while X4 and X5 can also independently be H;
          • residue entry 2
  • Figure US20210317156A1-20211014-C00267
          • while R1 is as in any of the compounds 31 to 107.
      • or
      • R1 is attached via a —S(O)— or —S(O)2— bridge or via a carbon atom of an aromatic ring system, which in each case is part of R1
        • while R4 is H and R5 is NH2
  • and in addition complies with the proviso that the monomeric compound of formula (III) and/or the monomeric precursor compound of formula (III) is not selected from the group of compounds consisting of
  • Figure US20210317156A1-20211014-C00268
  • and/or
  • the monomeric compound of formula (III) and/or the monomeric precursor of the invention is selected from the group depicted in Table 14.
  • TABLE 14
    Structures of novel monomeric precursor compounds according to the invention.
    # Compound Structure
    31 8-Amidomethylthioguanosine- 3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00269
    32 8-(4-Boronatephenylthio)- guanosine-3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00270
    33 8-(4-Cyanobenzylthio) guanosine- 3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00271
    34 8-(4-(2-Cyanophenyl)- benzylthio)guanosine- 3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00272
    35 8-Cyclohexylmethyl- thioguanosine- 3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00273
    36 8-(2,4- Dichlorophenylthio) guanosine- 3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00274
    37 8-Diethylphos- phonoethylthio- guanosine-3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00275
    38 8-Ethylthioguanosine- 3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00276
    39 8-Hexylthioguanosine- 3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00277
    40 8-(4- Isopropylphenylthio) guanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00278
    41 8-(3-(2- Methyl)furanyl) thioguanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00279
    42 8-(5-(1- Methyl)tetrazolyl) thioguanosine- 3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00280
    43 8-(4- Methoxybenzylthio) guanosine- 3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00281
    44 8-(7-(4-Methyl) coumarinyl)thio- guanosine-3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00282
    45 8-Methylacetyl- thioguanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00283
    46 8-(5-(1- Phenyl)tetrazolyl) thioguanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00284
    47 8-(2-Phenylethyl) thioguanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00285
    48 8-(2-(4- Phenyl)imidazolyl) thioguanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00286
    49 8-(2-Thiophenyl) thioguanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00287
    50 8-(1,1,2-Trifluoro-1- butenthio)guanosine- 3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00288
    51 8-Amidopropyl- thioguanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00289
    52 8-Amidoethyl- thioguanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00290
    53 8-Amidobutyl- thioguanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00291
    54 8-Acetamidoethyl- thioguanosine-3′, 5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00292
    55 8-(2-Benzothiazolyl) thioguanosine- 3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00293
    56 8-(2- Boronatebenzylthio) guanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00294
    57 8-(4-Boronatebutylthio) guanosine- 3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00295
    58 8-(4- Boronatebenzylthio) guanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00296
    59 8-(3- Boronatebenzylthio) guanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00297
    60 8-Azidomethyl- amidoethylthio- guanosine-3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00298
    61 8-(3- Boronatephenyl) amidobutylthio- guanosine-3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00299
    62 8-Benzylamidobutyl- thioguanosine- 3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00300
    63 8-Benzamidoethyl- thioguanosine- 3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00301
    64 8-(3-Boronatephenyl) amidomethyl- thioguanosine-3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00302
    65 8-Benzylamidomethylthio- guanosine-3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00303
    66 8-(3- Boronatephenyl) amidoethylthio- guanosine-3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00304
    67 8-(3- Boronatephenyl) amidopropylthio- guanosine-3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00305
    68 8-Carboxypropyl- thioguanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00306
    69 8-Carboxybutyl- thioguanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00307
    70 8-(2,6- Dichlorophenoxy- propyl)thio- guanosine-3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00308
    71 8-(4-Dimethylamino- phenyl)amido- methylthioguanosine- 3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00309
    72 8-(4-Dimethylamino- phenyl)amido- butylthioguanosine- 3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00310
    73 8-Ethylbutyrylthio- guanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00311
    74 8-Methylpropionyl- thioguanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00312
    75 8-Methylvalerianyl- thioguanosine- 3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00313
    76 8-Methoxyethyl- amidobutylthio- guanosine-3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00314
    77 8-Methoxyethyl- amidomethylthio- guanosine-3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00315
    78 8-Methoxyethyl- amidoethylthio- guanosine-3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00316
    79 8-Phenylamidomethylthio- guanosine-3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00317
    80 8-Phenylpropylthio- guanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00318
    81 8-(3-Butynylthio) guanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00319
    82 8-(4- Acetamidophenylthio) guanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00320
    83 8-(4- Chlorophenylsulfonyl) guanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00321
    84 8-(4-Chlorophenyl- sulfoxide)- guanosine-3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00322
    85 8-((2-Ethoxyethyl)-4- thiophenylthio) guanosine-3′,5′- cyclic monophosphat
    Figure US20210317156A1-20211014-C00323
    86 8-(4-Thiophenyl-4″- thiophenylthio) guanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00324
    87 8-(2-Azidoethylthio) guanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00325
    88 8-(3-Aminopropyl)- (pentaethoxy)- methylamidomethylthio- guanosine- 3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00326
    89 8-(2-Aminoethyl)- (octaethoxy)- amidomethylthio- guanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00327
    90 8-(2-Bromoethyl)- (pentaethoxy)- (4-thiophenylthio) guanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00328
    91 8-(4-(Propargyloxy- (hexaethoxy)- methyl)-[1,2,3]- triazole-1-yl)- methylamidoethylthio- guanosine-3′, 5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00329
    92 8-(4- Carboxyphenylthio) guanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00330
    93 8-(4-Hydroxy- phenylsulfonyl)- guanosine-3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00331
    94 8-(4-Isopropyl- phenylsulfonyl)- guanosine-3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00332
    95 8-(4-Methyl- carboxyphenylthio)- guanosine-3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00333
    96 8-Methylsulfonyl- guanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00334
    97 8-(1-Bromo-2- naphthyl)methyl- thioguanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00335
    98 8-(2-(1-Benzyl- [1,2,3]-triazole- 4-yl)-ethylthio) guanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00336
    99 8-(3-Fluoro-5- methoxybenzylthio) guanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00337
    100 8-Pentafluorobenzyl- thioguanosine- 3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00338
    101 8-Triphenylimino- phosphoranyl- guanosine-3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00339
    102 8-(4-Chlorophenyl) guanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00340
    103 8-(4-Fluorophenyl) guanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00341
    104 8-(2-Furyl)guanosine- 3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00342
    105 8-(4-Hydroxyphenyl) guanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00343
    106 8-(4-Isopropylphenyl) guanosine- 3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00344
    107 8-Phenylguanosine- 3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00345
    108 β-Phenyl-1, N2-etheno-8- thioguanosine-3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00346
    109 8-(2-Aminophenyl- thio)-ß-phenyl- 1, N2-ethenoguanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00347
    110 8-Cyclohexylthio- ß-phenyl-1, N2- ethenoguanosine- 3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00348
    111 8-Cyclopentylthio- ß-phenyl-1, N2- ethenoguanosine- 3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00349
    112 8-(4-Methylphenylthio)- ß-phenyl- 1, N2-ethenoguanosine- 3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00350
    113 8-(4-Methoxyphenylthio)-ß- phenyl-1, N2- ethenoguanosine-3′, 5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00351
    114 8-(3-(2-Methyl) furanyl)thio-ß- phenyl-1, N2- ethenoguanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00352
    115 8-(7-(4-Methyl) coumarinyl)thio-ß- phenyl-1, N2- ethenoguanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00353
    116 8-(2-Naphthyl)thio- ß-phenyl-1, N2-ethenoguanosine- 3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00354
    117 ß-Phenyl-1, N2- etheno-8-(2- thiophenyl) thioguanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00355
    118 ß-Phenyl-1, N2- etheno-8-(2- phenylethyl) thioguanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00356
    119 8-Amidomethylthio- ß-phenyl-1, N2-ethenoguanosine- 3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00357
    120 8-Carboxymethylthio- β-phenyl-1, N2-ethenoguanosine- 3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00358
    121 8-(4-Boronate- phenylthio)-ß- phenyl-1, N2- ethenoguanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00359
    122 8-Ethylthio-ß-phenyl-1, N2- ethenoguanosine-3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00360
    123 8-(4-Fluorophenyl- thio)-ß-phenyl- 1, N2-ethenoguanosine- 3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00361
    124 8-Methylthio- ß-phenyl-1, N2- ethenoguanosine- 3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00362
    125 ß-Phenyl-1, N2-etheno-8- propylthio- guanosine-3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00363
    126 8-Azidoethylthio- β-phenyl-1, N2- ethenoguanosine- 3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00364
    127 ß-Phenyl-1, N2- etheno-8-(4- trifluoromethylphenyl- thio)guanosine- 3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00365
    128 8-(4-Chlorophenyl- sulfonyl)-β- phenyl-1, N2- ethenoguanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00366
    129 8-(4-Isopropyl- phenylthio)-β- phenyl-1, N2- ethenoguanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00367
    130 8-(4-Isopropyl- phenylsulfonyl)-β- phenyl-1, N2- ethenoguanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00368
    131 8-(4-Chlorophenyl)- β-phenyl-1, N2-ethenoguanosine- 3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00369
    132 8-(4-Hydroxyphenyl)- β-phenyl-1, N2-ethenoguanosine- 3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00370
    133 8-(4-Isopropylphenyl)- β-phenyl- 1, N2-ethenoguanosine- 3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00371
    134 8-Bromo-(4- methoxy-ß-phenyl- 1, N2-etheno) guanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00372
    135 8-Bromo-(4- methyl-ß-phenyl-1, N2-etheno)guanosine- 3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00373
    136 alpha-Benzoyl- beta-phenyl-1, N2-etheno-8- bromoguanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00374
    137 8-Bromo-(4-chloro- ß-phenyl-1, N2-etheno)guanosine- 3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00375
    138 8-Bromo-(3-nitro- ß-phenyl-1, N2-etheno)guanosine- 3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00376
    139 8-Bromo-(ß- tert.-butyl-1, N2- etheno)guanosine- 3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00377
    140 8-Bromo-(2- methoxy-ß-phenyl- 1, N2-etheno) guanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00378
    141 8-Bromo-(3- methoxy-ß-phenyl- 1, N2-etheno) guanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00379
    142 8-Bromo-(2,4- dimethoxy-ß- phenyl-1, N2- etheno)guanosine- 3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00380
    143 8-Bromo-(4- pyridinyl-1, N2- etheno)guanosine- 3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00381
    144 8-Bromo-(3- thiophen-yl-1, N2- etheno)guanosine- 3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00382
    145 8-Bromo-(4-fluoro- ß-phenyl-1, N2-etheno)guanosine- 3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00383
    146 8-Bromo-1, N2- ethenoguanosine- 3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00384
    147 8-Bromo-(3-hydroxy- ß-phenyl-1, N2-etheno)guanosine- 3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00385
    148 8-Bromo-(4- hydroxy-ß-phenyl-1, N2-etheno)guanosine- 3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00386
    149 8-Bromo-(ß-(2,3- dihydro-1,4- benzodioxin)-1, N2- etheno)guanosine- 3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00387
    150 8-Bromo-(4- methylsulfonamido- ß-phenyl-1, N2- etheno)guanosine- 3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00388
    151 8-Bromo-(4-cyano- β-phenyl-1, N2-etheno)guanosine- 3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00389
    152 8-Bromo-(α-phenyl- β-methyl-1, N2-etheno)guanosine- 3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00390
    153 β-(4-Aminophenyl)- 1, N2-etheno- 8-bromoguanosine- 3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00391
    154 8-Bromo-(6-methoxy- 2-naphthyl- 1, N2-etheno) guanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00392
    155 8-Bromo-(9- phenanthrenyl-1, N2- etheno)guanosine- 3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00393
    156 8-Bromo-(4- trifluoromethyl-β- phenyl-1, N2-etheno) guanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00394
    157 (4-Fluoro-ß- phenyl-1, N2- etheno)-8-methyl- thioguanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00395
    158 (4-Methoxy- ß-phenyl-1, N2- etheno)-8-methyl- thioguanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00396
    159 1, N2-Etheno-8-(2- phenylethyl) thioguanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00397
    160 (4-Methoxy-ß- phenyl-1, N2- etheno)-8-propylthio- guanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00398
    161 β-1, N2-Acetyl-8- bromoguanosine- 3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00399
    162 8-Bromo-δ-1, N2- butyrylguanosine- 3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00400
    163 8-Bromo-1-(3- carboxypropyl) guanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00401
    164 1-[Aminomethyl- (pentaethoxy)- propylamidopropyl]-8- bromoguanosine- 3′,5′-cyclic monophosphate
    Figure US20210317156A1-20211014-C00402
    165 1-Benzyl-8-bromo- guanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00403
    166 2′-O-(2-Azidoacetyl)- 8-bromo-β- phenyl-1, N2- ethenoguanosine-3′,5′- cyclic monophosphate
    Figure US20210317156A1-20211014-C00404
  • As described above, the compounds according to the present invention may further be labelled, according to well-known labelling techniques. For example, fluorescent dyes may be coupled to the compounds in order to, but not limited to, localize the intracellular distribution of cyclic nucleotide binding proteins in living cells by means of confocal microscopy, for fluorescence correlation spectrometry, for fluorescence energy transfer studies, or for determination of their concentration in living cells.
  • It should be understood that hydrates of the compounds are also within the scope of the present invention.
  • Instead of or additional to fluorescent dyes the compounds according to the inventions may be labelled with (radio) nuclides. The person skilled in the art knows many techniques and suitable isotopes that can be used for this.
  • As described above, the invention also comprises PEGylated forms of the specified compounds, wherein PEGylation is generally known to greatly improve water solubility, pharmacokinetic and biodistribution properties.
  • The invention further comprises modifications wherein R7 (according to formula III) can be an unsubstituted or substituted thio- or borano function. Both modifications are known in the art to improve resistance towards metabolic degradation.1a, 14
  • The invention also comprises prodrug forms of the described compounds, wherein the negative charge of the (modified or unmodified) phosphate moiety is masked by a bioactivatable protecting group. It is widely accepted that such structures increase lipophilicity and with that, membrane-permeability and bioavailability resulting in a 10-1000 fold enhanced potency compared to the mother-compound. Such bioactivatable protecting groups can be introduced according to well known techniques of the art and include, but are not limited to acetoxymethyl, propionyloxymethyl, butyryloxymethyl, pivaloyloxymethyl, acetoxyethyl, acetoxybutyl, acetoxyisobutyl. Non limiting examples of corresponding residues R7 and/or R8 according to the invention are acetoxymethyloxy, propionyloxymethyloxy and butyryloxymethyloxy. More labile examples of protecting groups include alkyl or aryl groups as well as substituted alkyl or aryl groups. Non limiting examples for chemically labile protection groups of the R7 and/or R8 position are methyl, ethyl, 2-cyanoethyl, propyl, benzyl, phenyl and polyethylene glycol. These compounds are inactive per se, but extremely membrane-permeable, leading to strongly increased intracellular concentrations. Upon hydrolysis of the ester bond, the biologically active mother compounds are released.
  • Compounds according to the invention can also feature a photolysable group (also-called “caged”- or photo-activatable protecting group), which can be introduced according to well known techniques of the art. For example, but not limited to, caged groups may be coupled to an R8 oxo-function, leading to compounds with significantly increased lipophilicity and bioavailability. Non limiting examples for caged groups are o-nitro-benzyl, 1-(o-nitrophenyl)-ethylidene, 4,5-dimethoxy-2-nitro-benzyl, 7-dimethylaminocoumarin-4-yl (DMACM-caged), 7-diethylamino-coumarin-4-yl (DEACM-caged) and 6,7-bis(carboxymethoxy)coumarin-4-yl)methyl (BCMCM-caged).
  • The compounds according to the present invention can also be immobilized to insoluble supports, such as, but not limited to, agarose, dextran, cellulose, starch and other carbohydrate-based polymers, to synthetic polymers such as polacrylamide, polyethyleneimine, polystyrol and similar materials, to apatite, glass, silica, gold, graphene, fullerenes, carboranes, titania, zirconia or alumina, to the surface of a chip suitable for connection with various ligands.
  • The compounds according to the present invention can also be encapsulated within nanoparticles or liposomes for directed or non-directed delivery and release purposes of the compounds as described in the literature.11
  • Preferably, the new polymer linked multimeric cGMP analogues of the invention, or the related monomeric compounds of formula (III) of the present invention, respectively, are used for treating or preventing a disease or condition that is associated with low cGMP signaling activity.
  • Diseases and conditions are preferably treated with polymer linked multimeric cGMP analogues, or the related monomeric compounds of formula (III) of the present invention, respectively, that activate the disease-related unbalanced cGMP-system, and include1c:
      • neurodegenerative diseases associated with insufficient synaptic function and learning and memory defects.
      • neuromuscular junction defects including motor neuron diseases (e.g. Amyotrophic lateral sclerosis (ALS), Primary lateral sclerosis), also forms caused by certain infectious diseases (e.g. paralytic Poliomyelitis)
      • cancer, including the initiation of cancer cell apoptosis and the prevention of metastasis cardiovascular diseases, including hypertension, cardiac hypertrophy, angina pectoris, ischemia and stroke
      • parasitic diseases caused by trypanosomes, including Malaria, Chagas, sleeping sickness
      • borelliosis (lyme disease)
      • pulmonary diseases and conditions, such as pulmonary fibrosis and pulmonary hypertension
      • osteoporosis
      • Autoimmune diseases associated with an excessive proliferation of B- and T-cells including but not limited to: multiple sclerosis, Crohn's disease, Hashimoto's disease, juvenile arthritis, myocarditis, and rheuma.
  • It is to be understood herein that the treatment of a pathology, condition or disorder also includes the prevention thereof, even if not explicitly mentioned, unless specifically otherwise indicated.
  • In another aspect, the invention relates to a method for treating or preventing any of the above pathologies, conditions or disorders by administration of a therapeutically or prophylactically effective amount of an equatorially modified cGMP-analogue of the invention to a subject in need of prophylaxis or therapy.
  • The compounds according to the present invention, including the related monomeric compounds of formula (III) of the present invention, respectively, can also be used as research tool compound, preferably as research tool compound in regard of a disease or disorder related to an unbalanced cGMP-system, preferably a disease or disorder selected from the group consisting of cancer, cardiovascular disease or disorder, or autoimmune disease or disorder, or neurodegenerative disease or disorder.
  • The invention is further illustrated by the following figures and examples describing preferred embodiments of the present invention which are, however, not intended to limit the invention in any way.
  • EXAMPLES
  • 1. Compound Synthesis
  • General Experimental Methods
  • All applied solvents and reagents were available from commercial suppliers. 8-Br-cGMP, 8-Br-PET-cGMP and 4-N3-PET-8-Br-cGMP were available from Biolog Life Science Institute (Bremen, Germany). 8-T-cGMP is established in the literature and was prepared analogously to PET-8-T-cGMP (see examples below). Solvents used were specified as analytical or hplc grade. Dimethyl sulfoxide was stored over activated molecular sieves for at least two weeks before use. Chromatographic operations were performed at ambient temperature. Both reaction progress and purity of isolated products were determined by reversed phase hplc (RP-18, ODS-A-YMC, 120-S-11, 250×4 mm, 1.5 mL/min), wherein UV detection was performed either at 263 nm, an intermediate wavelength suitable to detect most cyclic GMP products and—impurities, or at the λmax of the particular starting material or product. Syntheses were typically performed in a 20-200 μmol scale in 2 mL polypropylene reaction vials with screw cap (reactions requiring inert gas atmosphere and/or degassing were performed in round bottom flasks (typically 10 or 25 mL)). Dissolution of poorly soluble reactants was achieved through sonification or heating (70° C.) prior to addition of reagents. In case dissolution was not elicited by these techniques, which mainly applied to some cGMP analogues carrying a PET-moiety, the suspension was used. Purification of products was accomplished by preparative reversed phase hplc (RP-18, ODS-A-YMC, 12 nm-S-10, 250×16 mm, UV 254 nm). The eluent composition is described in the particular synthetic example and, unless stated otherwise, can be used for analytical purposes as well. Desalting of products was accomplished by repeatedly freeze-drying or by preparative reversed phase hplc (RP-18, ODS-A-YMC, 12 nm-S-10, 250×16 mm, UV 254 nm) according to standard procedures for nucleotides. Solutions were frozen at −70° C. for 15 min prior to evaporation, in case a speedvac concentrator was used to remove the solvent. Products were either isolated as sodium or triethylammonium salt, depending on the applied buffer. Yields refer to the fraction of isolated product featuring the reported purity. They were calculated from UV-absorbance at the λmax, measured on a JASCO V-650 Spectrophotometer (JASCO Germany GmbH, Gross-Umstadt, Germany) according to Lambert-Beers law. Extinction coefficients were estimated from literature known values of structurally related compounds. Mass spectra were obtained with an Esquire LC 6000 spectrometer (Bruker Daltronics, Bremen, Germany) in the ESI-MS mode with 50% water/50% methanol as matrix.
  • Experimental Procedures for the Preparation of 8-Thio-Modified Guanosine-3′,5′-Cyclic Monophosphate Analogues
  • General Procedure A:
  • In a typical experiment the corresponding thiol reactant (8 eq) and NaOH (2 M, 4 eq) were added successively to a solution of the corresponding 8-Br-substituted cGMP analogue (sodium salt, 65 mM, 1 eq) in H2O/i-PrOH (1:1, v/v). The reaction mixture was heated to 90° C. and stirred until the bromide starting material was completely consumed or no further reaction progress was observed. The solution was then allowed to reach room temperature, neutralized with HCl (1 M) and the solvent was removed through high vacuum evaporation with a speedvac concentrator. The residue was dissolved in water (1 mL) and washed with MTBE (3×).* The aqueous phase was evaporated under reduced pressure using a rotary evaporator, the residue redissolved in water, subjected to preparative reversed phase hplc and desalted, giving the 8-thio-modified cGMP analogue. *In case the residue was not soluble in water, the obtained suspension was washed with MTBE and (if necessary) diluted with MeOH to dissolve remaining precipitate.
  • General Procedure A2:
  • In a typical experiment the corresponding thiol(ate) reactant (4.5 eq) was added to a solution of the corresponding 8-Br-substituted cGMP analogue (sodium salt, 65 mM, 1 eq) in H2O/i-PrOH (1:1, v/v). The reaction mixture was stirred at room temperature until the bromide starting material was completely consumed or no further reaction progress was observed. The solution was then adjusted to pH 6 with NaOH (10%) and the solvent was removed through high vacuum evaporation with a speedvac concentrator. The residue was dissolved in water (1 mL) and washed with CH2Cl2 (3×). The aqueous phase was evaporated under reduced pressure using a rotary evaporator, the residue redissolved in water, subjected to preparative reversed phase hplc and desalted, giving the 8-thio-modified cGMP analogue.
  • General Procedure B:
  • In a typical experiment a solution of the 8-Br-substituted cGMP analogue (sodium salt, 87 mM, 1 eq) was added portionwise over 2 h to a suspension of the corresponding dithiol (50 mM in water/i-PrOH, 2:3, v/v, 10 eq) and NaOH (2 M, 5 eq). The reaction mixture was heated to 90° C. and stirred until the bromide starting material was completely consumed or no further reaction progress was observed. The solvent was removed through high vacuum evaporation with a speedvac concentrator. The residue was suspended in water (1 mL), neutralized with HCl (1 M) and filtered. The crude product solution was subjected to preparative reversed phase hplc and desalted, giving the thiol analogue.
  • General Procedure C:
  • In a typical experiment NaOH (2 M, 16 eq) and the corresponding thiol reactant (8 eq) were added successively to a solution of the 8-Br-substituted cGMP analogue (sodium salt, 200 mM, 1 eq) in borate buffer (100 mM, pH 12). The reaction mixture was heated to 90° C. and stirred until the bromide starting material was completely consumed or no further reaction progress was observed. The solution was then allowed to reach room temperature and neutralized with HCl (1 M). The solvent was removed under reduced pressure using a rotary evaporator. The residue was dissolved in water (1 mL), subjected to preparative reversed phase hplc and desalted.
  • General Procedure D:
  • In a typical experiment N,N-diisopropylethylamine (2 eq) and the corresponding bromide (1 eq) were added successively to a solution of the 8-SH-substituted cGMP analogue (sodium or triethylammonium salt, 100 mM, 1 eq) in DMSO. The reaction mixture was stirred until the thiol starting material was completely consumed or no further reaction progress was observed. The solvent was removed through high vacuum evaporation with a speedvac concentrator. The residue was dissolved in water (1 mL), washed with ethyl acetate (3×), subjected to preparative reversed phase hplc and desalted.
  • General Procedure E:
  • For the formation of dimeric cGMP analogues general Procedure D was followed using N,N-diisopropylethylamine (2 eq), the corresponding bis-bromide spacer (0.5 eq) and the 8-SH-substituted cGMP analogue (sodium or triethylammonium salt, 100 mM, 1 eq) in DMSO.
  • Experimental Procedure for the Transformation of Carboxylic Acid Ester Functionalized Guanosine-3′,5′-Cyclic Monophosphate Analogues into the Corresponding Carboxylic Acid or Amide
  • General Procedure F:
  • In a typical experiment NaOH (2 M, 10 eq) was added to a solution of the corresponding ester (80 mM, 1 eq) in water/MeOH (1:1, v/v). The reaction mixture was stirred until the ester starting material was completely consumed or no further reaction progress was observed. The solution was then neutralized with HCl (1 M) and the solvent was removed under reduced pressure using a rotary evaporator. The residue was dissolved in water (1 mL), subjected to preparative reversed phase hplc and desalted, giving the carboxylic acid analogue.
  • General Procedure G:
  • In a typical experiment the corresponding ester (1 eq) was dissolved in excess methanolic ammonia (4.2 M, 200 eq). The reaction mixture was stirred until the starting material was completely consumed or no further reaction progress was observed. The solvent was removed through high vacuum evaporation with a speedvac concentrator. The residue was dissolved in water (1 mL), neutralized with HCl (1 M) and filtered through a syringe filter. The crude product was subjected to preparative reversed phase hplc and desalted, giving the carboxylic acid amide analogue.
  • Experimental Procedures for the Formation of Amide Bonds with Guanosine-3′,5′-Cyclic Monophosphate Analogues
  • General Procedure H:
  • In a typical experiment HOBt (1.1 eq), N,N-diisopropylethylamine (2.2 eq) and EDC (1.1 eq) were added successively to a solution of the corresponding acid-substituted cGMP analogue (100 mM in DMSO, 1 eq) and the corresponding amine (1.1 eq)*. The reaction mixture was stirred until the starting material was completely consumed or no further reaction progress was observed. The solvent was removed through high vacuum evaporation with a speedvac concentrator. The residue was dissolved in water (1 mL) and washed with ethyl acetate (5×). The aqueous phase was evaporated under reduced pressure using a rotary evaporator, redissolved in water, subjected to preparative reversed phase hplc and desalted, giving the coupled cGMP analogue. *The less valuable reactant was added in slight excess, thus for the reaction with reversed functions the amine-substituted cGMP analogue (100 mM in DMSO, 1 eq) and the acid reactant (1.1 eq) were used.
  • General Procedure I:
  • In a typical experiment HOBt (1.1 eq), N,N-diisopropylethylamine (2.2 eq) and EDC (1.1 eq) were added successively to a solution of the corresponding acid-substituted cGMP analogue (100 mM in DMSO, 1 eq) and the corresponding bis-amino spacer (0.5 eq). Workup was performed as described in general procedure H, giving the dimeric cGMP analogue.
  • General Procedure J:
  • In a typical experiment N,N-diisopropylethylamine (2.2 eq) and PyBOP (1.1 eq) were added successively to a solution of the corresponding carboxylic acid-substituted cGMP analogue (100 mM in DMSO, 1 eq) and the corresponding amine (1.1 eq)*. The reaction mixture was stirred until the starting material was completely consumed or no further reaction progress was observed (usually <10 min). Water (100 μL) was added, stirring was continued for 10 min and the solvent was removed through high vacuum evaporation with a speedvac concentrator. The residue was dissolved in water (1 mL), if necessary the pH was adjusted to 6 with NaOH (2 M) or HCl (1 M) and the solution washed with ethyl acetate (5×). The aqueous phase was evaporated under reduced pressure using a rotary evaporator, redissolved in water, subjected to preparative reversed phase hplc and desalted, giving the coupled cGMP analogue. *The less valuable reactant was added in slight excess, thus for the reaction with reversed functions the amine-substituted cGMP analogue (100 mM in DMSO, 1 eq) and the acid reactant (1.1 eq) were used.
  • General Procedure K:
  • In a typical experiment a solution of the corresponding carboxylic acid-substituted cGMP analogue (100 mM in DMSO, 1 eq) was added portionwise over 40 min to a solution of the bis-amino spacer (400 mM in DMSO, 5 eq), N,N-diisopropyethylamine (2.2 eq) and PyBOP (1.1 eq). More PyBOP (1 eq) was added and the reaction mixture was stirred until the starting material was completely consumed or no further reaction progress was observed (usually <10 min). Workup was performed as described in general procedure J, giving the monomeric cGMP analogue coupling product.
  • General Procedure L:
  • General procedure J was followed using the corresponding acid-substituted cGMP analogue (100 mM in DMSO, 1 eq), the bis-amino spacer (0.5 eq), N,N-diisopropylethylamine (2.2 eq) and PyBOP (1.1 eq) to obtain the dimeric cGMP analogue.
  • General Procedure M:
  • General procedure J was followed using the corresponding amine-substituted cGMP analogue (33 mM in DMSO, 1 eq), the linker tri-acid (0.3 eq), N,N-diisopropylethylamine (2 eq) and PyBOP (1.3 eq) to obtain the trimeric cGMP analogue.
  • General Procedure N:
  • General procedure J was followed using the corresponding amine-substituted cGMP analogue (diisopropylethylammonium salt, 50 mM in DMSO, 1 eq)*, the linker tetra-acid (tetra-diisopropylethylammonium salt, 0.25 eq)*, N,N-diisopropylethylamine (3 eq) and PyBOP (1.3 eq) to obtain the tetrameric cGMP analogue. *To transform the reactants into the diisopropylethylammonium salt they were subjected to N,N-diisopropylethylamine (3 eq per acidic function) in water (0.1-0.3 M) and evaporated to dryness using a speedvac concentrator at high vacuum.
  • Experimental Procedures for the Preparation of 8-Sulfonyl- and 8-Sulfoxide-Modified Guanosine-3′,5′-Cyclic Monophosphate Analogues
  • General Procedure O:
  • In a typical experiment a solution of OXONE® (180 mM, 5 eq) in NaOAc buffer (2 M, pH 4.2) was added dropwise to a solution of the corresponding 8-thio-substituted cGMP analogue (40 mM, 1 eq) in water/MeOH (1:1, v/v). The reaction mixture was stirred until the thio starting material was completely consumed or no further reaction progress was observed. The solution was then neutralized with NaOH (2 M) and filtered through a syringe filter. The solvent was removed under reduced pressure using a rotary evaporator. The residue was dissolved in water (1 mL), subjected to preparative reversed phase hplc and desalted, giving the 8-sulfonyl-substituted cGMP analogue.
  • Derivatives featuring a modified phosphate function, sensitive to oxidation reactions, such as a phosphorothioate, were synthesized starting from the corresponding guanosine, while the (modified) phosphate group was then introduced according to well established methods of the art (e.g. thiophosphorylation protocol12) after oxidation of the 8-thio function.
  • General Procedure P:
  • General procedure O was followed, favoring the formation of the 8-sulfoxide-substituted cGMP analogue through shorter reaction time and decreased equivalents of oxidizing agent OXONE® (1.5 eq).
  • Experimental Procedure for the Generation of 8-Azidoalkylthio-Substituted Guanosine-3′,5′-Cyclic Monophosphate Analogues
  • General Procedure Q:
  • In a typical experiment NaN3 (22.5 eq) was added portionwise over 5 h to a solution of 1,2-dibromoalkane (1.5 M, 15 eq) in DMF in an amber flask. The reaction mixture was stirred for 23 h and the 8-SH-substituted cGMP analogue (triethylammonium salt, 1 eq) as well as N,N-diisopropylethylamine (1 eq) were added successively. Stirring was continued until the cGMP analogue starting material was completely consumed or no further reaction progress was observed (usually about 1 h). The solvent was removed through high vacuum evaporation with a speedvac concentrator. The residue was dissolved in water (1 mL) and washed with MTBE (5×). The aqueous phase was evaporated under reduced pressure using a rotary evaporator, the residue was redissolved in water, subjected to preparative reversed phase hplc and desalted, giving the 8-azidoalkylthio-substituted analogue.
  • Experimental Procedures for the [3+2] Cycloaddition of Azides and Terminal Alkynes on Guanosine-3′,5′-Cyclic Monophosphate Analogues
  • General Procedure R:
  • In a typical experiment a solution of the corresponding azide (0.5 M in CH2Cl2, 1.1 eq) was added to the alkyne-substituted cGMP analogue (40 mM in H2O, 1 eq) in an amber flask. Bromotris(triphenylphosphine)copper(I) ([Cu(PPh3)3Br]) (0.05 eq) was added and the reaction mixture was stirred until the alkyne starting material was completely consumed or no further reaction progress was observed. The mixture was diluted with water (to 1.5 mL) and washed with CH2Cl2 (3×). The aqueous phase was evaporated under reduced pressure using a rotary evaporator, the residue was redissolved in water, subjected to preparative reversed phase hplc and desalted, giving the triazole addition product.
  • General Procedure S:
  • In a typical experiment Cu(PPh3)3Br (0.05 eq) was added to a solution of the corresponding azide (13 mM, 1 eq) and the corresponding alkyne (13 mM, 1 eq) in water/N,N-diisopropylethylamine (7:1, v/v) in an amber flask. The reaction mixture was stirred at 65° C. until the starting material was completely consumed or no further reaction progress was observed. The solvent was removed through high vacuum evaporation with a speedvac concentrator. The residue was dissolved in water (1 mL) and washed with CH2Cl2 (3×). The aqueous phase was evaporated under reduced pressure using a rotary evaporator, the residue was redissolved in water, subjected to preparative reversed phase hplc and desalted, giving the triazole-containing product.
  • General Procedure T:
  • General Procedure S was followed, using Cu(PPh3)3Br (0.05 eq), the corresponding azide-substituted cGMP analogue (23 mM, 1 eq) and the corresponding bis-alkyne (12 mM, 2 eq) in water/N,N-diisopropylethylamine (8:1, v/v). Conditions were chosen to obtain both the monomeric and the dimeric triazole-containing product.
  • General Procedure U:
  • General Procedure S was followed, using [Cu(PPh3)3Br] (0.05 eq), the corresponding azide-substituted cGMP analogue (33 mM, 1 eq) and the corresponding bis-alkyne (16 mM, 0.5 eq) in water/N,N-diisopropylethylamine (10:1, v/v) to obtain the dimeric triazole-containing product.
  • Experimental Procedure for the Transformation of Azido-Substituted Guanosine-3′,5′-Cyclic Monophosphate Analogues into the Corresponding Amines
  • General Procedure V:
  • In a typical experiment a solution of the azido-substituted cGMP analogue (2.5 mM in water, 1 eq) in an amber flask was adjusted to pH 10 by addition of triethylamine and cooled to 10° C. DL-Dithiothreitol (5 eq) was added and the reaction mixture was stirred until the azide starting material was completely consumed or no further reaction progress was observed (usually <20 min). The mixture was evaporated to dryness under reduced pressure using a rotary evaporator. The residue was dissolved in water (1 mL), subjected to preparative reversed phase hplc and desalted, giving the amine-substituted cGMP analogue.
  • Experimental Procedures for the Transformation of 8-Azido-Substituted Guanosine-3′,5′-Cyclic Monophosphate Analogues into the Corresponding Iminophosphoranyl Analogue
  • General Procedure W:
  • In a typical experiment PPh3 (1.75 eq) and water (100 μL) were added to a solution of 8-azido-substituted cGMP analogue (100 mM, 1 eq) in DMF in an amber flask. The reaction mixture was stirred until the azide starting material was completely consumed or no further reaction progress was observed. The solvent was removed through high vacuum evaporation with a speedvac concentrator. The residue was suspended in water (1 mL) and washed with toluene (5×). The aqueous phase was evaporated under reduced pressure using a rotary evaporator, the residue was redissolved in water/MeOH (4:1), subjected to preparative reversed phase hplc and desalted, giving the iminophosphoranyl analogue.
  • Experimental Procedure for the Suzuki Cross-Coupling of Br-Substituted Guanosine-3′,5′-Cyclic Monophosphate Analogues with Organoboronic Acids
  • General Procedure X:
  • In a typical experiment aqueous K2CO3 (2 M, 3 eq) and Pd(dppf)C12 (0.05 eq) were added successively to a solution of the Br-substituted cGMP analogue (52 mM, 1 eq) and the boronic acid (72 mM, 1.4 eq) in EtOH/H2O (1:1, v/v). The reaction mixture was immediately degased applying three cycles of freeze-pump-thaw technique and stirred at 90° C. under argon until the bromide starting material was completely consumed or no further reaction progress was observed. The solvent was removed through high vacuum evaporation with a speedvac concentrator. The residue was suspended in water and washed with CHCl3 (3×). Methanol was added until dissolution of the precipitate (up to H2O/MeOH=1:1). If an organic phase, containing residual CHCl3, emerged from this composition, it was separated. The aqueous phase was then filtered through a Macherey-Nagel Chromafix C 18 (S) 270 mg cartridge (preconditioned with 10 mL of MeOH, 50% MeOH and 30% MeOH respectively) and rinsed with 30% MeOH (6 mL). The solvent was removed under reduced pressure using a rotary evaporator. The residue was dissolved in water (1 mL), subjected to preparative reversed phase hplc and desalted, giving the cross-coupling product. * All solvents used, were degassed through sonification under reduced pressure prior to the experiment.
  • General Procedure X2 (Preparation of Bis Boronic Acid Reagent 4-B(OH)2PhS-PEG5-(CH2)2-4-SPhB(OH)2:
  • In a typical experiment N,N-diisopropylethylamine (2 eq) was added to a solution of 4-mercaptophenylboronic acid (0.2 M, 1 eq) and Br-(EO)5—(CH2)2—Br (0.5 eq) in DMF. The reaction mixture was stirred until the boronic acid starting material was completely consumed or no further reaction progress was observed. The solvent was removed through high vacuum evaporation with a speedvac concentrator. The residue was dissolved in methanol (1 mL) and subjected to preparative reversed phase hplc (62% MeOH) giving 4-B(OH)2PhS-PEG5-(CH2)2-4-SPhB(OH)2 (34% yield).
  • Experimental Procedure for the Preparation of 1, N2-Functionalized Guanosine-3′,5′-Cyclic Monophosphate Analogues
  • General Procedure Y:
  • In a typical experiment DBU (7 eq) and the corresponding 2-bromo-aceto-reactant (3.5 eq) were added successively to a solution of the corresponding cGMP analogue (50 mM, 1 eq) in DMSO. The reaction mixture was stirred under exclusion of light until the cGMP analogue starting material was completely consumed or no further reaction progress was observed. Water (100 μL) was added, stirring was continued for 10 min and the solvent was removed through high vacuum evaporation with a speedvac concentrator. The residue was dissolved in methanol (0.5 mL) and the pH adjusted to 6-7 with HCl (1 M). In case a precipitate was formed thereby, methanol was added to redissolve it. Otherwise, water was slowly added until all components just remained soluble (max. H2O/MeOH=5:1). The solution was subjected to preparative reversed phase hplc and desalted, giving the 1, N2-etheno-functionalized cGMP analogue.
  • General Procedure Y2:
  • In a typical experiment DBU (2 eq) and the corresponding alkyl bromoacetate-reactant (1.1 eq) were added successively to a solution of the corresponding cGMP analogue (100 mM, 1 eq) in DMSO. The reaction mixture was stirred until the cGMP analogue starting material was completely consumed or no further reaction progress was observed. Water (100 μL) was added, stirring was continued for 10 min and the solvent was removed through high vacuum evaporation with a speedvac concentrator. The residue was dissolved in H2O (0.5 mL) and the pH adjusted to 6-7 with HCl (1 M). The solution was subjected to preparative reversed phase hplc and desalted, giving the 1, N2-acyl-functionalized cGMP analogue.
  • General Procedure Y3:
  • In a typical experiment N,N-diisopropylethylamine (2 eq) and PyBOP (1.1 eq) were added successively to a solution of the corresponding 1-carboxyalkyl-substituted cGMP analogue (10 mM in DMSO, 1 eq). The reaction mixture was stirred until the cGMP analogue starting material was completely consumed or no further reaction progress was observed. Water (100 μL) was added, stirring was continued for 10 min and the solvent was removed through high vacuum evaporation with a speedvac concentrator. The residue was dissolved in water (1 mL), the pH adjusted to 5-6 with NaOH (2 M) and the solution washed with ethyl acetate (5×). The aqueous phase was evaporated under reduced pressure using a rotary evaporator, redissolved in water, subjected to preparative reversed phase hplc and desalted, giving the 1, N2-acyl-functionalized cGMP analogue.
  • Experimental Procedures for the Preparation of 1-Substituted Guanosine-3′,5′-Cyclic Monophosphate Analogues
  • General Procedure Z:
  • In a typical experiment DBU (4 eq) and the corresponding bromide- (or iodide) reactant (4 eq) were added successively to a solution of the corresponding cGMP analogue (50-300 mM, 1 eq) in DMSO. The reaction mixture was stirred until the cGMP analogue starting material was completely consumed or no further reaction progress was observed. The solvent was removed through high vacuum evaporation with a speedvac concentrator. The residue was dissolved in H2O (0.5 mL) and, in case the resulting solution was not neutral, the pH was adjusted to 7 with HCl (1 M). The solution was washed with ethyl acetate (4×). The aqueous phase was evaporated under reduced pressure using a rotary evaporator, the residue was redissolved in water, subjected to preparative reversed phase hplc and desalted, giving the 1-substituted cGMP analogue.
  • General Procedure Z2:
  • In a typical experiment DBU (2 eq) and the corresponding dibromide-reactant (0.5 eq) were added successively to a solution of the corresponding cGMP analogue (15 mM, 1 eq) in DMSO. The reaction mixture was stirred at 90° C. until the cGMP analogue starting material was completely consumed or no further reaction progress was observed. The solvent was removed through high vacuum evaporation with a speedvac concentrator. The residue was dissolved in H2O (0.5 mL), the pH adjusted to 5-7 with HCl (1 M) and the solution was washed with ethyl acetate (4×). The aqueous phase was evaporated under reduced pressure using a rotary evaporator, the residue was redissolved in water, subjected to preparative reversed phase hplc and desalted, giving the 1-substituted dimeric cGMP analogue.
  • Experimental Procedures for the Preparation of 2′-OR Substituted Guanosine-3′,5′-Cyclic Monophosphate Analogues
  • General Procedure ZZ:
  • In a typical experiment 2-azidoacetic anhydride (32 eq, prepared according to Freudenberg13) and 4-dimethylaminopyridine (1 eq) were added successively to the corresponding cGMP analogue (1 eq). The reaction mixture was stirred under exclusion of light until the cGMP analogue starting material was completely consumed or no further reaction progress was observed. The mixture was separated between MTBE and H2O, the organic phase was decanted off and the aqueous phase washed with MTBE (2×). A precipitate was dissolved by adding methanol to the aqueous layer. The solution was subjected to preparative reversed phase hplc and desalted, giving the 2′-O-(2-azidoacetyl)-substituted cGMP analogue.
  • Synthesis of previously established precursors is described in the following:
  • Figure US20210317156A1-20211014-C00405
  • 8-Carboxymethylthioguanosine-3′, 5′-cyclic Monophosphate (8-CMT-cGMP)
  • Using general procedure C, 8-Br-cGMP was reacted with mercaptoacetic acid to give the title compound.
  • Yield (Purity): 66% (>99%).
  • HPLC: (5% MeCN, 100 mM TEAF buffer, pH 6.8).
  • UV-VIS: λmax=275 nm (pH 7), ε=13700 (est.).
  • ESI-MS (+): m/z calculated for C12H15N5O9PS ([M+H]+): 436.03, found: 436.
  • ESI-MS (−): m/z calculated for C12H13N5O9PS ([M−H]): 434.02, found: 434.
  • Figure US20210317156A1-20211014-C00406
  • 8-Methylthioguanosine-3′, 5′-cyclic Monophosphate (8-MeS-cGMP)
  • Using general procedure A, 8-Br-cGMP (1 eq) was reacted with sodium methanethiolate (4 eq) to give the title compound.
  • Yield (Purity): 50% (>99%).
  • HPLC: (9 MeCN, 20 mM TEAF buffer, pH 6.8).
  • UV-VIS: λmax=274 nm (pH 7), ε=14000 (est.).
  • ESI-MS (+): m/z calculated for C11H15N5O7PS ([M+H]+): 392.04, found: 392.
  • ESI-MS (−): m/z calculated for C11H13N5O7PS ([M−H]): 390.03, found: 390.
  • Figure US20210317156A1-20211014-C00407
  • 8-Carboxyethylthioguanosine-3′, 5′-cyclic Monophosphate (8-CET-cGMP)
  • The title compound was synthesized from 8-MPT-cGMP using general procedure F.
  • Yield (Purity): 56% (>99%).
  • HPLC: (5 MeCN, 10 mM TEAF buffer, pH 6.8).
  • UV-VIS: λmax=275 nm (pH 7), ε=13700 (est.).
  • ESI-MS (+): m/z calculated for C13H17N5O9PS ([M+H]+): 450.05, found: 450.
  • ESI-MS (−): m/z calculated for C13H15N5O9PS ([M−H]): 448.33, found: 448.
  • Figure US20210317156A1-20211014-C00408
  • 8-(4-Thiophenylthio)guanosine-3′, 5′-cyclic Monophosphate (8-pTPT-cGMP)
  • Using general procedure B, 8-Br-cGMP was reacted with 1,4-benzenedithiol to give the title compound.
  • Yield (Purity): 41% (>99%).
  • HPLC: (32% MeOH, 10 mM TEAF buffer, pH 6.8).
  • UV-VIS: λmax=286 nm (pH 7), ε=21500 (est.).
  • ESI-MS (+): m/z calculated for C16H17N5O7PS2 ([M+H]+): 486.03, found: 486.
  • ESI-MS (−): m/z calculated for C16H15N5O7PS2 ([M−H]−): 484.02, found: 484.
  • The invention is further illustrated by the figures and examples of Table 15 describing preferred embodiments of the present invention which are, however, not intended to limit the invention in any way. Structural examples of novel compounds are depicted in the free acid form. After HPLC workup, compounds are obtained as salts of the applied buffer, but can be transformed to other salt forms or to the free acid by cation exchange according to standard procedures for nucleotides.
  • TABLE 15
    Examples of novel polymer linked multimeric cGMP compounds.
    # Compound/Structure
     1
    Figure US20210317156A1-20211014-C00409
    Guanosine-3′,5′-cyclic monophosphate-[8-thio-(pentaethoxy)-ethylthio-8]-
    guanosine-3′,5′-cyclic monophosphate (cGMP-8-T-(EO)5-ET-8-cGMP)
    Using general procedure E, 8-T-cGMP was reacted with Br-PEG5-CH2CH2Br to give the title
    compound.
    Yield (Purity): 51% (>99%).
    HPLC: (30% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 274 nm (pH 7), ϵ = 24660 (est.).
    ESI-MS (+): m/z calculated for C32H46N10O19P2S2Na ([M + Na]+): 1023.18, found: 1023.
    ESI-MS (−): m/z calculated for C32H45N10O19P2S2 ([M − H]): 999.18, found: 999.
     2
    Figure US20210317156A1-20211014-C00410
    Guanosine-3′,5′-cyclic monophosphate-[8-thiomethylamidomethyl-(pentaethoxy)-
    propylamidomethylthio-8]-guanosine-3′,5′-cyclic monophosphate (cGMP-8-
    TMAmdM-(EO)5-PrAmdMT-8-cGMP)
    Using general procedure I, 8-CMT-cGMP was reacted with NH2CH2-PEG5-(CH2)3NH2 to
    give the title compound.
    Yield (Purity): 42% (>99%).
    HPLC: (27% MeOH, 10 mM TEAF buffer pH 6.8).
    UV-VIS: λmax = 275 nm (pH 7), ϵ = 24660 (est.).
    ESI-MS (+): m/z calculated for C38H54N12O21P2S2Na3 ([M − 2H + 3Na]+): 1209.21, found: 1209.
    ESI-MS (−): m/z calculated for C38H55N12O21P2S2 ([M − H]): 1141.25, found: 1141.
     3
    Figure US20210317156A1-20211014-C00411
    Guanosine-3′,5′-cyclic monophosphate-[8-thiomethylamido-(octaethoxy)-
    ethylamidomethylthio-8]-guanosine-3′,5′-cyclic monophosphate (cGMP-8-TMAmd-
    (EO)8-EAmdMT-8-cGMP)
    Using general procedure I, 8-CMT-cGMP was reacted with NH2-(EO)8-(CH2)2NH2 to give the
    title compound.
    Yield (Purity): 38% (>98%).
    HPLC: (27% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 275 nm (pH 7), ϵ = 24660 (est.).
    ESI-MS (+): m/z calculated for C42H64N12O24P2S2Na ([M + Na]+): 1269.30, found: 1269.
    ESI-MS (−): m/z calculated for C42H63N12O24P2S2 ([M − H]): 1245.30, found: 1245.
     4
    Figure US20210317156A1-20211014-C00412
    Guanosine-3′,5′-cyclic monophosphate-[8-(4-thiophenylthio)-(pentaethoxy)-ethyl-
    (4-thiophenylthio)-8]-guanosine-3′,5′-cyclic monophosphate (cGMP-8-pTPT-(EO)5-
    EpTPT-8-cGMP)
    Using general procedure E, 8-pTPT-cGMP was reacted with Br-PEG5-CH2CH2Br to give the
    title compound.
    Yield (Purity): 31% (>99%).
    HPLC: (52% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 275 nm (pH 7), ϵ = 38700 (est.).
    ES-MS (+): m/z calculated for C44H54N10O19P2S4Na ([M + H]+): 1239.18, found 1239.
    ES-MS (−): m/z calculated for C44H53N10O19P2S4 ([M − H]): 1215.18, found 1215.
     5
    Figure US20210317156A1-20211014-C00413
    β-Phenyl-1,N2-ethenoguanosine-3′,5′-cyclic monophosphate-[8-thiomethylamido-
    (octaethoxy)-ethylamidomethylthio-8]-β-phenyl-1,N2-ethenoguanosine-3′,5′-cyclic
    monophosphate (PET-cGMP-8-TMAmd-(EO)8-EAmdMT-8-cGMP-PET)
    Using general procedure I, 8-CMT-PET-cGMP was reacted with NH2-PEG8-(CH2)2NH2 to
    give the title compound.
    Yield (Purity): 24% (>99%).
    HPLC: (49% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 272 nm (pH 7), ϵ = 72000 (est.).
    ESI-MS (+): m/z calculated for C58H75N12O24P2S2 ([M + 2H]2+): 724.70, found: 724.
    ESI-MS (−): m/z calculated for C58H71N12O24P2S2 ([M − 2H]2−): 722.68, found: 722.
     6
    Figure US20210317156A1-20211014-C00414
    8-Bromoquanosine-3′,5′-cyclic monophosphate-[1,N2-etheno-β-phenyl-4-yl-(1-
    [1,2,3]-triazole-4-yl)-methoxy-(hexaethoxy)-methyl-(4-(4-[1,2,3]-triazole-1-yl)-
    β-phenyl-1,N2-etheno)]-8-bromoguanosine-3′,5′-cyclic monophosphate (8-Br-
    cGMP-ETP-p(1-[1,2,3]-Tz-4)-MeO-(EO)6-Me-p(4-[1,2,3]-Tz-1)-PET-cGMP-8-Br)
    Using general procedure U, 4-N3-PET-8-Br-cGMP was reacted with Bis-Propargyl-PEG7 to
    give the title compound.
    Yield (Purity): 34% (>99%).
    HPLC: (20% MeCN, 50 mM NaH2PO4 buffer, pH 6.8).
    UV-VIS: λmax = 270 nm (pH 7), ϵ = 72000 (est.).
    ESI-MS (+): m/z calculated for C54H59Br2N16O21P2 ([M + H]+): 1487.19, found: 1487.
    ESI-MS (−): m/z calculated for C54H57Br2N16O21P2 ([M − H]): 1485.17, found: 1485.
     7
    Figure US20210317156A1-20211014-C00415
    Guanosine-3′,5′-cyclic monophosphate-[8-thiomethylamido-(octaethoxy)-
    ethylamidomethylthio-8]-β-phenyl-1,N2-ethenoguanosine-3′,5′-cyclic
    monophosphate (cGMP-8-TMAmd-(EO)8-EAmdMT-8-cGMP-PET)
    Using general procedure J, 8-CMT-PET-cGMP (C 169, 1 eq) was reacted with 8-AE-(EO)8-
    AmdMT-cGMP (A 240, 1 eq) to give the title compound.
    Yield (Purity): 47% (>99%).
    HPLC: (19% MeCN, 50 mM NaH2PO4 buffer, pH 6.8).
    UV-VIS: λmax = 274 nm (pH 7), ϵ = 48330 (est.).
    ESI-MS (+): m/z calculated for C50H69N12O24P2S2 ([M + H]+): 1347.35, found: 1347.
    ESI-MS (−): m/z calculated for C50H67N12O24P2S2 ([M − H]): 1345.33, found: 1345.
     8
    Figure US20210317156A1-20211014-C00416
    Guanosine-3′,5′-cyclic monophosphate-[8-thiomethylamido-(nonadecaethoxy)-
    ethylamidomethylthio-8]-guanosine-3′,5′-cyclic monophosphate (cGMP-8-TMAmd-
    (EO)19-EAmdMT-8-cGMP)
    Using general procedure L, 8-CMT-cGMP was reacted with NH2-PEG19-(CH2)2NH2 to give
    the title compound.
    Yield (Purity): 47% (>97%).
    HPLC (17% MeCN, 25 mM NaH2PO4 buffer, pH 6.8).
    UV-VIS: λmax = 275 nm (pH 7), ϵ = 24660 (est.).
    ESI-MS (+): m/z calculated for C64H109N12O35P2S2 ([M + H]+): 1731.60, found: 1732.
    ESI-MS (−): m/z calculated for C64H107N12O35P2S2 ([M − H]): 1729.56, found: 1730.
     9
    Figure US20210317156A1-20211014-C00417
    Guanosine-3′,5′-cyclic monophosphate-[8-(1-[1,2,3]-triazole-4-yl)-methoxy-
    (hexaethoxy)-methyl-(4-[1,2,3]-triazole-1-yl)-8]-guanosine-3′,5′-cyclic
    monophosphate (cGMP-8-(1-[1,2,3]-Tz-4-)-MeO-(EO)6-Me-(4-[1,2,3]-Tz-1)-8-cGMP)
    Using general procedure U, 8-N3-cGMP was reacted with Bis-Propargly-PEG7 to give the
    title compound.
    Yield (Purity): 4% (>99%).
    HPLC: (13% MeCN, 50 mM NaH2PO4 buffer, pH 6.8).
    UV-VIS: λmax = 277 nm (pH 7), ϵ = 38700 (est.).
    ESI-MS (+): m/z calculated for C38H53N16O21P2 ([M + H]+): 1131.30, found: 1131.
    ESI-MS (−): m/z calculated for C38H51N16O21P2 ([M − H]): 1129.29, found: 1129.
    10
    Figure US20210317156A1-20211014-C00418
    Guanosine-3′,5′-cyclic monophosphate-[8-thiomethylamido-(PEG pd 2000)-
    amidomethylthio-8]-guanosine-3′,5′-cyclic monophosphate (cGMP-8-TMAmd-(PEG
    pd 2000)-AmdMT-8-cGMP)
    Using general procedure L, 8-CMT-cGMP was reacted with NH2-PEGn-(CH2)2NH2
    (2000 Da, polydispers) to give the title compound.
    Yield (Purity): 47% (>95%).
    HPLC: (Gradient, 21% then 24% MeCN, 50 mM NaH2PO4 buffer, pH 6.8).
    UV-VIS: λmax = 275 nm (pH 7), ϵ = 24660 (est.).
    ESI-MS: (−): m/z calculated for C114H206N12O60P2S2 (n = 44, [M − 2H]2−): 1414.62, found: 1414.
    11
    Figure US20210317156A1-20211014-C00419
    β-Phenyl-1,N2-ethenoguanosine-3′,5′-cyclic monophosphate-[8-thiomethylamido-
    (nonadecaethoxy)-ethylamidomethylthio-8]-guanosine-3′,5′-cyclic monophosphate
    (PET-cGMP-8-TMAmd-(EO)19-EAmdMT-8-cGMP)
    Using the procedure J, 8-CMT-cGMP (1 eq) and 8-CMT-PET-cGMP (1 eq) were
    reacted with NH2-PEG19-(CH2)2NH2 in the presence of N,N-diisopropylethylamine (4 eq) and
    PyBOP (2.05 eq) to give the title compound. Conditions were chosen to additionally obtain
    the symmetrically substituted dimeric analogues.
    Yield (Purity): 35% (>99%).
    HPLC: (Gradient, 21% then 23 the 24% MeCN, 50 mM NaH2PO4 buffer, pH 6.8).
    UV-VIS: λmax = 274 nm (pH 7), ϵ = 49700 (est.).
    ESI-MS (+): m/z calculated for C72H113N12O35P2S2 ([M + H]+): 1831.63, found 1832.
    ESI-MS (−): m/z calculated for C72H111N12O35P2S2 ([M − H]): 1829.62, found: 1830.
    12
    Figure US20210317156A1-20211014-C00420
    β-Phenyl-1,N2-ethenoguanosine-3′,5′-cyclic monophosphate-[8-thiomethylamido-
    (nonadecaethoxy)-ethylamidomethylthio-8]-β-phenyl-1,N2-ethenoguanosine-3′,5′-
    cyclic monophosphate (PET-cGMP-8-TMAmd-(EO)19-EAmdMT-8-cGMP-PET)
    Using general procedure J, 8-CMT-cGMP (1 eq) and 8-CMT-PET-cGMP (1 eq) were
    reacted with NH2-PEG19-(CH2)2NH2 in the presence of N,N-diisopropylethylamine (4 eq) and PyBOP (2.05 eq) to give
    the title compound. Conditions were chosen to additionally obtain the symmetrically substituted dimeric analogues.
    Yield (Purity): 22% (>99%).
    HPLC: (Gradient, 21% then 23 then 24% MeCN, 50 mM NaH2PO4 buffer, pH 6.8).
    UV-VIS: λmax = 272 nm (pH 7), ϵ = 72000 (est.).
    ESI-MS (+): m/z calculated for C80H117N12O35P2S2 ([M + H]+): 1931.67, found: 1932.
    ESI-MS (−): m/z calculated for C80H115N12O35P2S2 ([M − H]): 1929.65, found: 1930.
    13
    Figure US20210317156A1-20211014-C00421
    β-Phenyl-1,N2-ethenoguanosine-3′,5′-cyclic monophosphate-[8-thiomethylamido-
    (PEG pd 2000)-amidomethylthio-8]-β-phenyl-1,N2-ethenoguanosine-3′,5′-cyclic
    monophosphate (PET-cGMP-8-TMAmd-(PEG pd 2000)-AmdMT-8-cGMP-PET)
    Using general procedure L, 8-CMT-PET-cGMP was reacted with NH2-PEGn-(CH2)2NH2
    (2000 Da, polydispers). More PyBOP (0.5 eq) was added stepwise to drive the reaction to
    completion and yield the title compound.
    Yield (Purity): 35% (>95%).
    HPLC: (28% MeCN, 25 mM NaH2PO4 buffer, pH 6.8).
    UV-VIS: λmax = 272 nm (pH 7), ϵ = 72000 (est.).
    ESI-MS: (−): m/z calculated for C130H214N12O60P2S2 (n = 44, [M − 2H]2−): 1516.6, found: 1516.
    14
    Figure US20210317156A1-20211014-C00422
    Benzene-1,3,5-tri-[(8-amidomethyl-(pentaethoxy)-
    propylamidomethylthio)guanosine-3′,5′-cyclic monophosphate] (Bn-1,3,5-tri(AmdPr-
    (OE)5-MAmdMT-8-cGMP)
    Using general procedure M, 8-APr-(EO)5-MAmdMT-cGMP was reacted with 1,3,5-
    benzenetricarboxylic acid to give the title compound.
    Yield (Purity): 60% (>99%).
    HPLC: (18% MeCN, 15 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 274 nm (pH 7), ϵ = 36990 (est.).
    ESI-MS (+): m/z calculated for C87H133N21O42P3S3 ([M + H]+): 2332.73, found 2333.
    ESI-MS (−): m/z calculated for C87H131N21O42P3S3 ([M − H]): 2330.71, found: 2331.
    15
    Figure US20210317156A1-20211014-C00423
    Ethylene glycol-bis(2-aminoethylether)-N,N,N′,N′-tetra-[(8-
    methylamidoethylthio)guanosine-3′,5′-cyclic monophosphate] (EG-N,N,N′,N′-tetra(8-
    MAmdET-cGMP))
    Using general procedure N, 8-AET-cGMP was reacted with Ethylene glycol-bis(2-
    aminoethylether)-N,N,N′,N′-tetraacetic acid (EGTA) to give the title compound.
    Yield (Purity): 15% (>99%).
    HPLC: (28% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 274 nm (pH 7), ϵ = 49320 (est.).
    ESI-MS (+): m/z calculated for C62H85N26O34P4S4 ([M + H]+): 1989.36, found: 1989.
    ESI-MS (−): m/z calculated for C62H83N26O34P4S4 ([M − H]): 1987.34, found: 1987.
    16
    Figure US20210317156A1-20211014-C00424
    Guanosine-3′,5′-cyclic monophosphate-[8-thio(dodecanyl)-thio-8]-guanosine-
    3′,5′-cyclic monophosphate (cGMP-8-T-(CH2)12-T-8-cGMP)
    Using general procedure E, 8-T-cGMP was reacted with 1,12-dibromdodecane to give the
    title compound.
    Yield (Purity): 73% (>99%).
    HPLC: (26% MeCN, 30 mM NaH2PO4 buffer, pH 6.8).
    UV-VIS: λmax = 276 nm (pH 7), ϵ = 24660 (est.).
    ESI-MS (+): m/z calculated for C32H47N10O14P2S2 ([M + H]+): 921.22, found: 921.
    ESI-MS (−): m/z calculated for C32H45N10O14P2S2 ([M − H]): 919.20, found: 919.
    17
    Figure US20210317156A1-20211014-C00425
    β-Phenyl-1,N2-ethenoguanosine-3′,5′-cyclic monophosphate-[8-thio-(dodecanyl)-
    thio-8]-β-phenyl-1,N2-ethenoguanosine-3′,5′-cyclic monophosphate (PET-cGMP-
    8-T-(CH2)12-T-8-cGMP-PET)
    Using general procedure E, PET-8-T-cGMP was reacted with 1,12-dibromdodecane to give
    the title compound.
    Yield (Purity): 24% (>99%).
    HPLC: (36% MeCN, 20 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 275 nm (pH 7), ϵ = 72000 (est.).
    ESI-MS (−): m/z calculated for C48H53N10O14P2S2 ([M − H]): 1019.27, found: 1019.
    18
    Figure US20210317156A1-20211014-C00426
    Guanosine-3′,5′-cyclic monophosphate-[8-thioethylamidomethyl-(1-[1,2,3]-
    triazole-4-yl)-methoxy-(hexaethoxy)-methyl-(4-[1,2,3]-triazole-1-yl)-
    methylamidoethylthio-8]-guanosine-3′,5′-cyclic monophosphate (cGMP-8-TEAmdM-
    (1-[1,2,3]-Tz-4)-MeO-(EO)6-Me-(4-[1,2,3]-Tz-1)-MAmdET-8-cGMP)
    Using general procedure S, 8-N3-MAmdET-cGMP (1 eq) was reacted with bis-propargyl-
    PEG7 (2 eq) to give the title compound. Conditions were chosen to additionally obtain the
    pegylated monomeric analogue.
    Yield (Purity): 23% (>99%).
    HPLC: (14% MeCN, 30 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 274 nm (pH 7), ϵ = 24660 (est.).
    ESI-MS (+): m/z calculated for C46H67N18O23P2S2 ([M + H]+): 1365.35, found: 1365.
    ESI-MS (−): m/z calculated for C46H65N18O23P2S2 ([M − H]): 1363.34, found: 1363.
    19
    Figure US20210317156A1-20211014-C00427
    Guanosine-3′,5′-cyclic monophosphate-[8-thioethylthio-8]-guanosine-3′,5′-cyclic
    monophosphate (cGMP-8-TET-cGMP)
    Using general method Q, the title compound was obtained beside monomeric azide
    analogue starting from 8-T-cGMP.
    Yield (Purity): 19% (>99%).
    HPLC: (10% MeOH, 15 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 273 nm (pH 7), ϵ = 24660 (est.).
    ESI-MS (+): m/z calculated for C22H27N10O14P2S2 ([M + H]+): 78.06, found: 781.
    ESI-MS (−): m/z calculated for C22H25N10O14P2S2 ([M − H]): 779.05, found: 779.
    20
    Figure US20210317156A1-20211014-C00428
    Guanosine-3′,5′-cyclic monophosphate-[8-thioethyl-(1-[1,2,3]-triazole-4-yl)-
    methoxy-(hexaethoxy)-methyl-(4-[1,2,3]-triazole-1-yl)-ethylthio-8]-guanosine-
    3′,5′-cyclic monophosphate (cGMP-8-TE-(1-[1,2,3]-Tz-4)-MeO-(EO)6-Me-(4-[1,2,3]-Tz-
    1)-ET-8-cGMP)
    Using general procedure U, 8-N3-ET-cGMP was reacted with bis-propargyl-PEG7 to give the
    title compound.
    Yield (Purity): 61% (>99%).
    HPLC: (14% MeCN, 20 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 276 nm (pH 7), ϵ = 24660 (est.).
    ESI-MS: (+): m/z calculated for C42H61N16O21P2S2 ([M + H]+): 1251.31, found: 1251.
    ESI-MS: (−): m/z calculated for C42H59N16O21P2S2 ([M − H]): 1249.30, found: 1249.
    21
    Figure US20210317156A1-20211014-C00429
    Guanosine-3′,5′-cyclic monophosphate-[8-thio-(dodecanyl)-(4-thiophenyl-4″-
    thiophenylthio)-(dodecanyl)-thio-8]-guanosine-3′,5′-cyclic monophosphate
    (cGMP-8-T-(CH2)12-pTPpTPT-(CH2)12-T-8-cGMP)
    A solution of 8-T-cGMP (200 mM, 1 eq) and N,N-diisopropylethylamine (2 eq) in DMSO was
    added portionwise over 30 min to a solution of 1,12-dibromdodecane (1.5M, 15 eq) in
    DMSO at 40′ C°. The reaction mixture was stirred until no further reaction progress was
    observed (<10% remaining starting material). The solvent was removed through high
    vacuum evaporation with a speedvac concentrator. The residue was dissolved in
    MeCN/water (8:1, v/v), washed with petroleum ether (3×) and the aqueous phase
    evaporated to dryness using a rotary evaporator. The crude product was dissolved in DMF
    (115 mM). 4,4′-Thiobisbenzenthiol (0.5 eq) and N,N-diisopropylethylamine (2.2 eq) were
    added successively. The reactin mixture was stirred until the starting material was
    completely consumed. The solvent was removed through high vacuum evaporation with a
    speedvac concentrator. The residue was dissolved in water (1 mL), washed with ethyl
    acetate (3 × 1 mL), subjected to preparative reversed phase hplc and desalted.
    Yield (Purity): 26% (>99%).
    HPLC: (57% MeCN, 30 mM NaH2PO4 buffer, pH 6.8).
    UV-VIS: λmax = 275 nm (pH 7), ϵ = 24660 (est.).
    ESI-MS (+): m/z calculated for C56H79N10O14P2S5 ([M + H]+): 1337.39, found: 1337.
    ESI-MS (−): m/z calculated for C56H77N10O14P2S5 ([M − H]): 1335.37, found: 1335.
    22
    Figure US20210317156A1-20211014-C00430
    Guanosine-3′,5′-cyclic monophosphate-[8-thioethylamidomethyl-(1-[1,2,3]-
    triazole-4-yl)-methoxy-(hexaethoxy)-methyl-(4-(4-[1,2,3]-triazole-1-yl)-β-
    phenyl-1,N2-etheno)]-8-bromoguanosine-3′,5′-cyclic monophosphate (cGMP-8-
    TEAmdM-(1-[1,2,3]-Tz-4)-MeO-(EO)6-Me-(4-[1,2,3]-Tz-1)-PET-8-Br-cGMP)
    Using general procedure S, 4-N3-PET-8-Br-cGMP (1 eq) was reacted with 8-(4-(PargO-
    (EO)6-Me)-[1,2,3]-Tz-1)-MAmdET-cGMP (1 eq) to give the title compound.
    Yield (Purity): 26% (>99%).
    HPLC: (57% MeCN, 30 mM NaH2PO4 buffer, pH 6.8).
    UV-VIS: λmax = 275 nm (pH 7), ϵ = 24660 (est.).
    ESI-MS (+): m/z calculated for C56H79N10O14P2S5 ([M + H]+): 1337.39, found: 1337.
    ESI-MS (−): m/z calculated for C56H77N10O14P2S5 ([M − H]): 1335.37, found: 1335.
    23
    Figure US20210317156A1-20211014-C00431
    β-Phenyl-1,N2-ethenoguanosine-3′,5′-cyclic monophosphate-[8-thioethyl-(1-[1,2,
    3]-triazole-4-yl)-methoxy-(hexaethoxy)-methyl-(4-[1,2,3]-triazole-1-yl)-
    ethylthio-8]-β-phenyl-1,N2-ethenoguanosine-3′,5′-cyclic monophosphate (PET-
    cGMP-8-TE-(1-[1,2,3]-Tz-4)-MeO-(EO)6-Me-(4-[1,2,3]-Tz-1)-ET-8-cGMP-PET)
    Using general procedure U, PET-8-N3-ET-cGMP (A 257) was reacted with bis-propargyl-
    PEG7 to give the title compound.
    Yield (Purity): 23% (>99%).
    HPLC: (56% MeOH, 30 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 273 nm (pH 7), ϵ = 72000 (est.).
    ESI-MS (+): m/z calculated for C58H69N16O21P2S2 ([M + H]+): 1451.37, found: 1451.
    ESI-MS (−): m/z calculated for C58H67N16O21P2S2 ([M − H]): 1449.36, found: 1449.
    24
    Figure US20210317156A1-20211014-C00432
    8-Bromoguanosine-3′,5′-cyclic monophosphate-[1-propylamidomethyl-
    (pentaethoxy)-propylamidomethylthio-8]-β-phenyl-1,N2-ethenoguanosine-3′,5′-
    cyclic monophosphate (8-Br-cGMP-1-PrAmdM-(EO)5-PrAmdMT-8-cGMP-PET)
    Using general procedure J, 1-AM-(EO)5-PrAmdPr-8-Br-cGMP was reacted with 8-CMT-
    PET-cGMP to give the title compound.
    Yield (Purity): 20% (>99%).
    HPLC: (48% MeOH, 50 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 272 nm (pH 7), ϵ = 50580 (est.).
    ESI-MS (+): m/z calculated for C48H64N12O21P2SBr ([M + H]+): 1317.27, found: 1317.
    ESI-MS (−): m/z calculated for C48H62N12O21P2SBr ([M − H]): 1315.25, found: 1315.
    25
    Figure US20210317156A1-20211014-C00433
    8-Bromoguanosine-3′,5′-cyclic monophosphate-[1-(pentaethoxy)-ethyl-1]-8-
    bromoguanosine-3′,5′-cyclic monophosphate (8-Br-cGMP-1-(EO)5-E-1-cGMP-8-Br)
    Using general procedure Z2, 8-Br-cGMP was reacted with Br-PEG5-(CH2)2-Br to give the
    title compound.
    Yield (Purity): 32% (>99%).
    HPLC: (17% MeCN, 50 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 266 nm (pH 7), ϵ = 23400 (est.).
    ESI-MS (+): m/z calculated for C32H45N10O19P2Br2 ([M + H]+): 1095.07, found: 1095.
    ESI-MS (−): m/z calculated for C32H43N10O19P2Br2 ([M − H]): 1093.05, found: 1093.
    26
    Figure US20210317156A1-20211014-C00434
    8-Bromoguanosine-3′,5′-cyclic monophosphate-[1-propylamidomethyl-
    (pentaethoxy)-propylamidopropyl-1]-8-bromoguanosine-3′,5′-cyclic
    monophosphate (8-Br-cGMP-1-PrAmdM-(EO)5-PrAmdPr-1-cGMP-8-Br)
    Using adapted general procedure L, 8-Br-1-CPr-cGMP was reacted with NH2CH2-PEG5-
    (CH2)3-NH2 (3 eq) to receive the title compound and the pegylated monomeric analogue.
    Yield (Purity): 7% (>99%).
    HPLC: (36% MeOH, 100 mM TEAF buffer, pH 6.8 then (after sepperation of monomer)
    44% MeOH, 100 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 267 nm (pH 7), ϵ = 29160 (est.).
    ESI-MS (+): m/z calculated for C42H63N12O21P2Br2 ([M + H]+): 1293.21, found: 1293.
    ESI-MS (−): m/z calculated for C42H61N12O21P2Br2 ([M − H]): 1291.19, found: 1291.
    27
    Figure US20210317156A1-20211014-C00435
    8-Bromoguanosine-3′,5′-cyclic monophosphate-[1-propylamidoethyl-
    (pentaethoxy)-propylamidomethylthio-8]-guanosine-3′,5′-cyclic monophosphate
    (8-Br-cGMP-1-PrAmdM-(EO)5-PrAmdMT-8-cGMP)
    Using general procedure J, 1-AM-(EO)5-PrAmdPr-8-Br-cGMP was reacted with 8-CMT-
    cGMP to give the title compound.
    Yield (Purity): 32% (>99%).
    HPLC: (36% MeOH, 50 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 272 nm (pH 7), ϵ = 26910 (est.).
    ESI-MS (+): m/z calculated for C40H60N12O21P2SBr ([M + H]+): 1217.24, found: 1217.
    ESI-MS (−): m/z calculated for C40H58N12O21P2SBr ([M − H]): 1215.22 found: 1215.
    28
    Figure US20210317156A1-20211014-C00436
    Guanosine-3′,5′-cyclic monophosphate-[8-(phenyl-4-thio)-(pentaethoxy)-ethyl-
    (4-thiophenyl)-8]-guanosine-3′,5′-cyclic monophosphate (cGMP-8-PpT-(EO)5-
    EpTP-8-cGMP)
    Using general procedure X, 8-Br-cGMP was reacted with 4-B(OH)2PhS-PEG5-(CH2)2-4-
    SPhB(OH)2 (0.5 eq) to give the compound.
    Yield (Purity): 11% (>99%).
    HPLC: (23% MeCN, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 296 nm (pH 7), ϵ = 38700 (est.).
    ESI-MS (+): m/z calculated for C44H55N10O19P2S2 ([M + H]+): 1153.26, found: 1153.
    ESI-MS (−): m/z calculated for C44H53N10O19P2S2 ([M − H]): 1151.24 found: 1151.
    29
    Figure US20210317156A1-20211014-C00437
    β-1, N2-Acetyl-guanosine-3′,5′-cyclic monophosphate-[8-thiomethylamido-
    (octaethoxy)-ethylamidomethylthio-8]-β-1,N2-acetyl-guanosine-3′,5′-cyclic
    monophosphate (β-1,N2-Ac-cGMP-8-TMAmd-(EO)8-EAmdMT-8-cGMP-β-1,N2-Ac)
    Using general procedure C, β-1,N2-Ac-8-Br-cGMP is reacted with mercaptoacetic acid to give
    the carboxymethyl thio substituted derivative, which is transformed to the title compound by
    reaction with NH2-(EO)8-(CH2)2NH2 applying general procedure L.
    30
    Figure US20210317156A1-20211014-C00438
    8-Phenylguanosine-3′,5′-cyclic monophosphate-[1,N2-etheno-β-phenyl-4-yl-(1-
    [1,2,3]-triazole-4-yl)-methoxy-(hexaethoxy)-methyl-(4-(4-[1,2,3]-triazole-1-yl)-
    β-phenyl-1,N2-etheno)]-8-phenylguanosine-3′,5′-cyclic monophosphate (8-Phe-
    cGMP-ETP-p(1-[1,2,3]-Tz-4)-MeO-(EO)6-Me-p(4-[1,2,3]-Tz-1)-PET-cGMP-8-Phe)
    Using general procedure Y, 8-Phe-cGMP is reacted with 4-azidophenacylbromide to give
    the 4-N3-PET substituted derivative, which is transformed to the title compound by reaction
    with with bis-propargyl-(EO)7 applying general procedure U.
  • Monomeric precursors of the invention and/or momomeric compounds of the invention are further illustrated by the figures and examples of Table 16 describing preferred embodiments of the present invention which are, however, not intended to limit the invention in any way. Structural examples of novel compounds are depicted in the free acid form. After HPLC workup, compounds are obtained as salts of the applied buffer, but can be transformed to other salt forms or to the free acid by cation exchange according to standard procedures for nucleotides.
  • TABLE 16
    Examples of monomeric precursors and/or monomeric compound of the invention.
    # Compound/Structure
     31
    Figure US20210317156A1-20211014-C00439
    8-Amidomethylthioguanosine-3′,5′-cyclic monophosphate (8-AmdMT-cGMP)
    Using general procedure D, 8-T-cGMP was reacted with 2-bromoacetamide to give the title
    compound.
    Yield (Purity): 44% (>99%).
    HPLC: (5% MeCN, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax 275 nm (pH 7), ϵ = 13700 (est.).
    ESI-MS (+): m/z calculated for C12H16N6O8PS ([M + H]+): 435.05, found: 435.
    ESI-MS (−): m/z calculated for C12H14N6O8PS ([M − H]): 433.03, found: 433.
     32
    Figure US20210317156A1-20211014-C00440
    8-(4-Boronatephenylthio)-guanosine-3′,5′-cyclic monophosphate (8-pB(OH)2PT-
    cGMP)
    Using general procedure A, 8-Br-cGMP was reacted with 4-mercaptophenylboronic acid to
    give the title compound.
    Yield (Purity): 71% (>99%).
    HPLC: (32% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 276 nm (pH 7), ϵ = 21500 (est.).
    ESI-MS (+): m/z calculated for C16H17BN5O9PSNa ([M + H]+): 520.05, found: 520.
    ESI-MS (−): m/z calculated for C16H16BN5O9PS ([M − H]): 496.05, found: 496.
     33
    Figure US20210317156A1-20211014-C00441
    8-(4-Cyanobenzylthio)guanosine-3′,5′-cyclic monophosphate (8-pCNBT-cGMP)
    Using general procedure D, 8-T-cGMP was reacted with 4-cyanobenzyl bromide to give the
    title compound.
    Yield (Purity): 34% (>99%).
    HPLC: (32% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 276 nm (pH 7), ϵ = 13700 (est.).
    ESI-MS (+): m/z calculated for C18H18N6O7PS ([M + H]+): 493.07, found: 493.
    ESI-MS (−): m/z calculated for C18H16N6O7PS ([M − H]): 491.05, found: 491.
     34
    Figure US20210317156A1-20211014-C00442
    8-(4-(2-Cyanophenyl)-benzylthio)guanosine-3′,5′-cyclic monophosphate (8-(p(2-
    CNPhe)BT-cGMP
    Using general procedure D, 8-T-cGMP was reacted with 4-bromomethyl-2-cyanobiphenyl to
    give the title compound.
    Yield (Purity): 16% (>99%).
    HPLC: (52% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 260 nm (pH 7), ϵ = 13700 (est.).
    ESI-MS (+): m/z calculated for C24H22N6O7PS ([M + H]+): 569.10, found: 569.
    ESI-MS (−): m/z calculated for C24H20N6O7PS ([M − H]): 567.09, found: 567.
     35
    Figure US20210317156A1-20211014-C00443
    8-Cyclohexylmethylthioguanosine-3′,5′-cyclic monophosphate (8-cHeMT-cGMP)
    Using general procedure D, 8-T-cGMP (1 eq) was reacted with cyclohexylmethyl bromide
    (2 eq) at 90° C. to give the title compound.
    Yield (Purity): 38% (>99%).
    HPLC: (57% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 276 nm (pH 7), ϵ = 13700 (est.).
    ESI-MS (+): m/z calculated for C17H25N5O7PS ([M + H]+): 474.12, found: 474.
    ESI-MS (−): m/z calculated for C17H23N5O7PS ([M − H]): 472.11, found: 472.
     36
    Figure US20210317156A1-20211014-C00444
    8-(2,4-Dichlorophenylthio)guanosine-3′,5′-cyclic monophosphate (8-o,pDCIPT-
    cGMP)
    Using general procedure A, 8-Br-cGMP was reacted with 2,4-dichlorobenzenethiol to give
    the title compound.
    Yield (Purity): 33% (>99%).
    HPLC: (22% MeCN, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 279 nm (pH 7), ϵ = 21500 (est.).
    ESI-MS (+): m/z calculated for C16H14Cl2N5O7PSNa ([M + Na]+): 543.96, found: 544.
    ESI-MS (−): m/z calculated for C16H13Cl2N5O7PS ([M − H]): 519.97, found: 520.
     37
    Figure US20210317156A1-20211014-C00445
    8-Diethylphosphonoethylthio-guanosine-3′,5′-cyclic monophosphate (8-DEPET-
    cGMP)
    Using general procedure D, 8-T-cGMP was reacted with diethyl 2-bromoethylphosphonat to
    give the title compound.
    Yield (Purity): 20% (>99%).
    HPLC: (32% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 275 nm (pH 7), ϵ = 13700 (est.).
    ESI-MS (+): m/z calculated for C16H26N5O10P2S ([M + H]+): 542.09, found: 542.
    ESI-MS (−): m/z calculated for C16H24N5O10P2S ([M − H]): 540.07, found: 540.
     38
    Figure US20210317156A1-20211014-C00446
    8-Ethylthioguanosine-3′,5′-cyclic monophosphate (8-ET-cGMP)
    Using general procedure A, 8-Br-cGMP was reacted with ethanethiol to give the title
    compound.
    Yield (Purity): 30% (>99%).
    HPLC: (10% MeCN, 10 mM NaH2PO4 buffer, pH 4.8).
    UV-VIS: λmax = 275 nm (pH 7), ϵ = 14000 (est.).
    ESI-MS (+): m/z calculated for for C12H17N5O7PS ([M + H]+): 406.06, found: 406.
    ESI-MS (−): m/z calculated for C12H15N5O7PS ([M − H]): 404.04, found: 404.
     39
    Figure US20210317156A1-20211014-C00447
    8-Hexylthioguanosine-3′,5′-cyclic monophosphate (8-HT-cGMP)
    Using general procedure A, 8-Br-cGMP was reacted with 1-hexaethiol to give the title
    compound.
    Yield (Purity): 50% (>99%).
    HPLC: (21% MeCN, 20 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 276 nm (pH 7), ϵ = 14000 (est.).
    ESI-MS (+): m/z calculated for C16H25N5O7PS ([M + H]+): 462.12, found: 462.
    ESI-MS (−): m/z calculated for C16H23N5O7PS ([M − H]): 460.11, found: 460.
     40
    Figure US20210317156A1-20211014-C00448
    8-(4-Isopropylphenylthio)guanosine-3′,5′-cyclic monophosphate (8-pIPrPT-cGMP)
    Using general procedure A, 8-Br-cGMP was reacted with 4-Isopropylthiophenol to give the
    title compound.
    Yield (Purity): 75% (>98%).
    HPLC: (55% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 278 nm (pH 7), ϵ = 21500 (est.).
    ESI-MS (+): m/z calculated for C19H23N5O7PS ([M + H]+): 496.11, found: 496.
    ESI-MS (−): m/z calculated for C19H21N5O7PS ([M − H]): 494.09, found: 494.
     41
    Figure US20210317156A1-20211014-C00449
    8-(3-(2-Methyl)furanyl)thioguanosine-3′,5′-cyclic monophosphate (8-(3-(2-Me)-
    FU)T-cGMP)
    Using general procedure A, 8-Br-cGMP was reacted with 2-methyl-3-furanethiol to give the
    title compound.
    Yield (Purity): 32% (>99%).
    HPLC: (37% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 275 nm (pH 7), ϵ = 21500 (est.).
    ESI-MS (+): m/z calculated for C15H17N5O8PS ([M + H]+): 458.05, found: 458.
    ESI-MS (−): m/z calculated for C15H15N5O8PS ([M − H]): 456.04, found: 456.
     42
    Figure US20210317156A1-20211014-C00450
    8-(5-(1-Methyl)tetrazolyl)thioguanosine-3′,5′-cyclic monophosphate (8-(5-(1-Me)-
    Tet)T-cGMP
    Using general procedure A, 8-Br-cGMP was reacted with 5-mercapto-1-methyltetrazole to
    give the title compound.
    Yield (Purity): 29% (>95%).
    HPLC: (7% MeCN, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 276 nm (pH 7), ϵ = 21500 (est.).
    ESI-MS (+): m/z calculated for C12H15N9O7PS ([M + H]+): 460.06, found: 460.
    ESI-MS (−): m/z calculated for C12H13N9O7PS ([M − H]): 458.04, found: 458.
     43
    Figure US20210317156A1-20211014-C00451
    8-(4-Methoxybenzylthio)guanosine-3′,5′-cyclic monophosphate (8-pMeOBT-cGMP)
    Using the general procedure A, 8-Br-cGMP (1 eq) was reacted with 4-methoxybenzyl
    mercaptan (4 eq) to give the title compound.
    Yield (Purity): 37% (>99%).
    HPLC: (21% MeCN, 20 mM TEAF buffer, pH 6.8.).
    UV-VIS: λmax = 277 nm (pH 7), ϵ = 21500 (est.).
    ESI-MS (+): m/z calculated for C18H21N5O8PS ([M + H]+): 498.08, found: 498.
    ESI-MS (−): m/z calculated for C18H19N5O8PS ([M − H]): 496.07, found: 496.
     44
    Figure US20210317156A1-20211014-C00452
    8-(7-(4-Methyl)coumarinyl)thio-guanosine-3′,5′-cyclic monophosphate (8-(7-(4-Me)-
    Cou)T-cGMP)
    Using general procedure A, 8-Br-cGMP was reacted with 7-mercapto-4-methylcoumarin to
    give the title compound.
    Yield (Purity): 77% (>99%).
    HPLC: (35% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 281 nm (pH 7), ϵ = 21500 (est.).
    ESI-MS (+): m/z calculated for C20H19N5O9PS ([M + H]+): 536.06, found: 536.
    ESI-MS (−): m/z calculated for C20H17N5O9PS ([M − H]): 534.05, found: 534.
     45
    Figure US20210317156A1-20211014-C00453
    8-Methylacetylthioguanosine-3′,5′-cyclic monophosphate (8-MAcT-cGMP)
    Using general procedure D, 8-T-cGMP was reacted with methyl bromoacetate to give the
    title compound.
    Yield (Purity): 35% (>98%).
    HPLC: (25% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 274 nm (pH 7), ϵ = 13700 (est.).
    ESI-MS (+): m/z calculated for C13H17N5O9PS ([M + H]+): 450.05, found: 450.
    ESI-MS (−): m/z calculated for C13H15N5O9PS ([M − H]): 448.03, found: 448.
     46
    Figure US20210317156A1-20211014-C00454
    8-(5-(1-Phenyl)tetrazolyl)thioguanosine-3′,5′-cyclic monophosphate (8-(5-(1-Phe)-
    Tet)T-cGMP)
    Using general procedure A, 8-Br-cGMP was reacted with 5-mercapto-1-phenyl-1H-tetrazole
    to give the title compound.
    Yield (Purity): 44% (>99%).
    HPLC: (32% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 277 nm (pH 7), ϵ = 21500 (est.).
    ESI-MS (+): m/z calculated for C17H17N9O7PS ([M + H]+): 522.07, found: 522.
    ESI-MS (−): m/z calculated for C17H15N9O7PS ([M − H]): 520.06, found: 520.
     47
    Figure US20210317156A1-20211014-C00455
    8-(2-Phenylethyl)thioguanosine-3′,5′-cyclic monophosphate (8-PhEtT-cGMP)
    Using general procedure A, 8-Br-cGMP (1 eq) was reacted with 2-phenylethanethio (4 eq)
    to give the title compound.
    Yield (Purity): 20% (>99%).
    HPLC: (21% MeCN, TEAF buffer, pH 6.8).
    UV-VIS: λmax = 277 nm (pH 7), ϵ = 21500 (est.).
    ESI-MS (+): m/z calculated for C18H21N5O7PS ([M + H]+): 482.09, found: 482.
    ESI-MS (−): m/z calculated for C18H19N5O7PS ([M − H]): 480.07, found: 480.
     48
    Figure US20210317156A1-20211014-C00456
    8-(2-(4-Phenyl)imidazolyl)thioguanosine-3′,5′-cyclic monophosphate (8-(2-(4-Phe)-
    Im)T-cGMP)
    Using general procedure A, 8-Br-cGMP was reacted with 4-phenylimidazole-2-thiol to give
    the title compound.
    Yield (Purity): 26% (>99%).
    HPLC: (35% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 276 nm (pH 7), ϵ = 21500 (est.).
    ESI-MS (+): m/z calculated for C19H19N7O7PS ([M + H]+): 520.08, found: 520.
    ESI-MS (−): m/z calculated for C19H17N7O7PS ([M − H]): 518.07, found: 518.
     49
    Figure US20210317156A1-20211014-C00457
    8-(2-Thiophenyl)thioguanosine-3′,5′-cyclic monophosphate (8-(2-Tp)T-cGMP)
    Using general procedure A, 8-Br-cGMP was reacted with 2-thiophenethiol to give the title
    compound.
    Yield (Purity): 21% (>98%.)
    HPLC: (30% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 277 (pH 7), ϵ = 21500 (est.).
    ESI-MS (+): m/z calculated for C14H15N5O7PS2 ([M + H]+): 460.02, found: 460.
    ESI-MS (−): m/z calculated for C14H13N5O7PS2 ([M − H]): 458.00, found: 458.
     50
    Figure US20210317156A1-20211014-C00458
    8-(1,1,2-Trifluoro-1-butenthio)guanosine-3′,5′-cyclic monophosphate (8-(1,1,2-
    TF-Bu(1-en))T-cGMP)
    Using general procedure D, 8-TcGMP was reacted with 4-bromo-1,1,2-trifluoro-1-butene to
    give the title compound.
    Yield (Purity): 21% (>99%).
    HPLC: (37% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 276 nm (pH 7), ϵ = 13700 (est.).
    ESI-MS (+): m/z calculated for C14H16F3N5O7PS ([M + H]+): 486.05, found: 486.
    ESI-MS (−): m/z calculated for C14H14F3N5O7PS ([M − H]): 484.03, found: 484.
     51
    Figure US20210317156A1-20211014-C00459
    8-Amidopropylthioguanosine-3′,5′-cyclic monophosphate (8-AmdPrT-cGMP)
    The title compound was synthesized from 8-EButT-cGMP using general procedure G.
    Yield (Purity): 18% (>99%).
    HPLC: (32% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 0 274 nm (pH 7), ϵ = 13700 (est.).
    ES-MS (+): m/z calculated for C14H20N6O8PS ([M + H]+): 463.08, found: 463.
    ES-MS (−): m/z calculated for C14H18N6O8PS ([M − H]): 461.06, found: 461.
     52
    Figure US20210317156A1-20211014-C00460
    8-Amidoethylthioguanosine-3′,5′-cyclic monophosphate (8-AmdET-cGMP)
    The title compound was synthesized from 8-MPT-cGMP using general procedure G.
    Yield (Purity): 57% (>99%).
    HPLC: (6% MeCN, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 275 nm (pH 7), ϵ = 13700 (est.).
    ESI-MS (+): m/z calculated for C13H18N6O8PS ([M + H]+): 449.06, found: 449.
    ESI-MS (−): m/z calculated for C13H16N6O8PS ([M − H]): 447.34, found:.
     53
    Figure US20210317156A1-20211014-C00461
    8-Amidobutylthioguanosine-3′,5′-cyclic monophosphate (8-AmdBuT-cGMP)
    The title compound was synthesized from 8-MVAlT-cGMP using general procedure G.
    Yield (Purity): 24% (>99%).
    HPLC: (6% MeCN, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 275 nm (pH 7), ϵ = 13700 (est.).
    ESI-MS (+): m/z calculated for C15H22N6O8PS ([M + H]+): 477.10, found: 477.
    ESI-MS (−): m/z calculated for C15H20N6O8PS ([M − H]): 475.08, found: 475.
     54
    Figure US20210317156A1-20211014-C00462
    8-Acetamidoethylthioguanosine-3′,5′-cyclic monophosphate (8-AcAmdET-cGMP)
    Using general procedure H, 8-AET-cGMP was reacted with acetic acid to give the title
    compound.
    Yield (Purity): 34% (>98%).
    HPLC: (6% MeCN, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 275 nm (pH 7), ϵ = 13700 (est.).
    ESI-MS (+): m/z calculated for C14H20N6O8PS ([M + H]+): 463.08, found: 463.
    ESI-MS (−): m/z calculated for C14H18N6O8PS ([M − H]): 461.06, found:.
     55
    Figure US20210317156A1-20211014-C00463
    8-(2-Benzothiazolyl)thioguanosine-3′,5′-cyclic monophosphate (8-(2-BT)T-cGMP)
    Using general procedure A, 8-Br-cGMP was reacted with 2-mercaptobenzothiazole to give
    the title compound.
    Yield (Purity): 3% (>99%).
    HPLC: (37% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 278 nm (pH 7), ϵ 21500 (est.).
    ESI-MS (+): m/z calculated for C17H16N6O7PS2 ([M + H]+): 511.03, found: 511.
    ESI-MS (−): m/z calculated for C17H14N6O7PS2 ([M + H]+): 509.01, found: 509.
     56
    Figure US20210317156A1-20211014-C00464
    8-(2-Boronatebenzylthio)guanosine-3′,5′-cyclic monophosphate (8-(oB(OH)2Bn)T-
    cGMP)
    Using general procedure D, 8-T-cGMP was reacted with 2-(bromomethyl)phenylboronic
    acid to give the title compound.
    Yield (Purity): 37% (>99%).
    HPLC: (32% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 278 nm (pH 7), ϵ = 13700 (est.).
    ESI-MS (+): m/z calculated for C17H19BN5O9PSNa ([M + Na]+): 534.06, found: 534.
    ESI-MS (−): m/z calculated for C17H18BN5O9PS ([M − H]): 510.07, found: 510.
     57
    Figure US20210317156A1-20211014-C00465
    8-(4-Boronatebutylthio)guanosine-3′,5′-cyclic monophosphate (8-(pB(OH)2Bu)T-
    cGMP)
    Using general procedure D, 8-T-cGMP was reacted with 4-bromobutylboronic acid to give
    the title compound.
    Yield (Purity): 43% (>99%).
    HPLC: (30% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 275 nm (pH 7), ϵ = 13700 (est.).
    ESI-MS (+): m/z calculated for C14H21BN5O9PSNa ([M + H]+): 500.08, found: 500.
    ESI-MS (−): m/z calculated for C14H20BN5O9PS ([M − H]): 476.08, found: 476.
     58
    Figure US20210317156A1-20211014-C00466
    8-(4-Boronatebenzylthio)guanosine-3′,5′-cyclic monophosphate (8-(pB(OH)2Bn)T-
    cGMP)
    Using general procedure D, 8-T-cGMP was reacted with 4-(bromomethyl)phenylboronic
    acid to give the title compound.
    Yield (Purity): 67% (>99%).
    HPLC: (30% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 278 nm (pH 7), ϵ = 13700 (est.).
    ESI-MS (+): m/z calculated for C17H20BN5O9PS ([M + H]+): 512.08, found: 512.
    ESI-MS (−): m/z calculated for C17H18BN5O9PS ([M − H]): 510.07, found: 510.
     59
    Figure US20210317156A1-20211014-C00467
    8-(3-Boronatebenzylthio)guanosine-3′,5′-cyclic monophosphate (8-(mB(OH)2Bn)T-
    cGMP)
    Using general procedure D, 8-T-cGMP was reacted with 3-(bromomethyl)phenylboronic
    acid to give the title compound.
    Yield (Purity): 54% (>99%).
    HPLC: (30% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 278 nm (pH 7), ϵ = 13700 (est.).
    ESI-MS (+): m/z calculated for C17H19BN5PSNa ([M + Na]+): 534.06, found: 534.
    ESI-MS (−): m/z calculated for C17H18BN5O9PS ([M − H]): 510.07, found: 510.
     60
    Figure US20210317156A1-20211014-C00468
    8-Azidomethylamidoethylthioguanosine-3′,5′-cyclic monophosphate (8-N3-
    MAmdET-cGMP)
    Using general procedure J, 8-AET-cGMP was reacted with azidoacetic acid to give the title
    compound.
    Yield (Purity): 62% (>98%).
    HPLC: (21% MeOH, 20 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 276 nm (pH 7), ϵ = 13700 (est.).
    ESI-MS (+): m/z calculated for C14H19N9O8PS ([M + H]+): 504.08, found: 504.
    ESI-MS (−): m/z calculated for C14H17N9O8PS ([M − H]): 502.07, found: 502.
     61
    Figure US20210317156A1-20211014-C00469
    8-(3-Boronatephenyl)amidobutylthio-guanosine-3′,5′-cyclic monophosphate (8-
    (mB(OH)2PAmdBu)T-cGMP)
    Using general procedure H, 8-CBuT-cGMP was reacted with 3-aminobenzeneboronic acid
    to give the title compound.
    Yield (Purity): 50% (>99%).
    HPLC: (35% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 276 nm (pH 7), ϵ = 13700 (est.).
    ESI-MS (−): m/z calculated for C21H25BN6O10PS ([M − H]): 595.12, found: 595.
     62
    Figure US20210317156A1-20211014-C00470
    8-Benzylamidobutylthioguanosine-3′,5′-cyclic monophosphate (8-BnAmdBuT-
    cGMP)
    Using general procedure H, 8-CBuT-cGMP was reacted with benzylamine to give the title
    compound.
    Yield (Purity): 49% (>99%).
    HPLC: (35% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 276 nm (pH 7), ϵ = 13700 (est.).
    ESI-MS (+): m/z calculated for C22H28N6O8PS ([M + H]+): 567.14, found: 567.
    ESI-MS (−): m/z calculated for C22H26N6O8PS ([M − H]): 565.13, found: 565.
     63
    Figure US20210317156A1-20211014-C00471
    8-Benzamidoethylthioguanosine-3′,5′-cyclic monophosphate (8-BAmdET-cGMP)
    Using general procedure H, 8-AET-cGMP was reacted with benzoic acid to give the title
    compound.
    Yield (Purity): 12% (>99%).
    HPLC: (25% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 277 nm (pH 7), ϵ = 13700 (est.).
    ESI-MS (+): m/z calculated for C19H22N6O8PS ([M + H]+): 525.10, found: 525.
    ESI-MS (−): m/z calculated for C19H20N6O8PS ([M − H]): 523.08, found: 523.
     64
    Figure US20210317156A1-20211014-C00472
    8-(3-Boronatephenyl)amidomethyl-thioguanosine-3′,5′-cyclic monophosphate (8-
    mB(OH)2PAmdMT-cGMP)
    Using general procedure H, 8-CMT-cGMP was reacted with 3-aminophenylboronic acid to
    give the title compound.
    Yield (Purity): 24% (>99%).
    HPLC: (15% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 272 nm (pH 7), ϵ = 13700 (est.).
    ESI-MS (−): m/z calculated for C18H19BN6O10PS ([M − H]): 553.07, found: 553.
     65
    Figure US20210317156A1-20211014-C00473
    8-Benzylamidomethylthio-guanosine-3′,5′-cyclic monophosphate (8-BnAmdMT-
    cGMP)
    Using general procedure H, 8-CMT-cGMP was reacted with benzylamine to give the title
    compound.
    Yield (Purity): 53% (>99%).
    HPLC: (28% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 278 nm (pH 7), ϵ = 13700 (est.).
    ESI-MS (+): m/z calculated for C19H22N6O8PS ([M + H]+): 525.10, found: 525.
    ESI-MS (−): m/z calculated for C19H20N6O8PS ([M − H]): 523.08, found: 523.
     66
    Figure US20210317156A1-20211014-C00474
    8-(3-Boronatephenyl)amidoethylthio-guanosine-3′,5′-cyclic monophosphate (8-
    mB(OH)2PAmdET-cGMP)
    Using general procedure H, 8-CET-cGMP was reacted with 3-aminophenylboronic acid to
    give the title compound.
    Yield (Purity): 11% (>99%).
    HPLC: (32% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 255 (+278) nm (pH 7), ϵ = 13700 (est.).
    ESI-MS (−): m/z calculated for C19H21BN6O10PS ([M − H]): 567.09, found: 567.
     67
    Figure US20210317156A1-20211014-C00475
    8-(3-Boronatephenyl)amidopropylthioguanosine-3′,5′-cyclic monophosphate (8-
    mB(OH)2PAmdPrT-cGMP)
    Using general procedure H, 8-CPrT-cGMP was reacted with 3-aminophenylboronic acid to
    give the title compound.
    Yield (Purity): 65% (>99%).
    HPLC: (32% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 276 nm (pH 7), ϵ = 13700 (est.).
    ESI-MS (−): m/z calculated for C20H23BN6O10PS ([M − H]): 581.10, found: 581.
     68
    Figure US20210317156A1-20211014-C00476
    8-Carboxypropylthioguanosine-3′,5′-cyclic monophosphate (8-CPrT-cGMP)
    The title compound was synthesized from 8-EButT-cGMP using general procedure F.
    Yield (Purity): 95% (>99%).
    HPLC: (5% MeCN, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 275 nm (pH 7), ϵ = 13700 (est.).
    ESI-MS (+): m/z calculated for C14H19N5O9PS ([M + H]+): 464.06, found: 464.
    ESI-MS (−): m/z calculated for C14H17N5O9PS ([M − H]): 462.05, found: 462.
     69
    Figure US20210317156A1-20211014-C00477
    8-Carboxybutylthioguanosine-3′,5′-cyclic monophosphate (8-CBuT-cGMP)
    The title compound was synthesized from 8-MVAlT-cGMP using general procedure F.
    Yield (Purity): 87% (>99%).
    HPLC: (6% MeCN, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 275 nm (pH 7), ϵ = 13700 (est.).
    ESI-MS (+): m/z calculated for C15H21N5O9PS ([M + H]+): 478.08, found: 478.
    ESI-MS (−): m/z calculated for C15H19N5O9PS ([M − H]): 476.06, found: 476.
     70
    Figure US20210317156A1-20211014-C00478
    8-(2,6-Dichlorophenoxypropyl)thio-guanosine-3′,5′-cyclic monophosphase (8-(2,6-
    DClPheoPr)T-cGMP
    Using general procedure D, 8-T-cGMP was reacted with 2-(3-bromopropoxy)-1,3-
    dichlorobenzene to give the title compound.
    Yield (Purity): 21% (>99%).
    HPLC: (52% MeOH, 10 mM TEAF buffer, pH 6.8).
    US-VIS: λmax = 275 nm (pH 7), ϵ = 13700 (est.).
    ESI-MS (+): m/z calculated for C19H21Cl2N5O8PS ([M + H]+): 580.02, found: 580.
    ESI-MS (−): m/z calculated for C19H19Cl2N5O8PS ([M − H]): 578.01, found: 578.
     71
    Figure US20210317156A1-20211014-C00479
    8-(4-Dimethylaminophenyl)amido-methylthioguanosine-3′,5′-cyclic
    monophosphate (8-pDMAPAmdMT-cGMP)
    Using general procedure H, 8-CMT-cGMP was reacted with N,N-dimethyl-p-
    phenylenediamine dihydrochloride applying 3.3 eq of N,N-diisopropylethylamie to give the
    title compound.
    Yield (Purity): 73% (>99%).
    HPLC: (36% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 274 nm (pH 7), ϵ = 13700 (est.).
    ESI-MS (+): m/z calculated for C20H25N7O8PS ([M + H]+): 554.12, found: 554.
    ESI-MS (−): m/z calculated for C20H23N7O8PS ([M − H]): 552.11, found: 552.
     72
    Figure US20210317156A1-20211014-C00480
    8-(4-Dimethylaminophenyl)amido-butylthioguanosine-3′,5′-cyclic monophosphate
    (8-pDMAPAmdBuT-cGMP)
    Using general procedure H, 8-CBuT-cGMP was reacted with N,N-dimethyl-p-
    phenylenediamine dihydrochloride applying 3.3 eq of N,N-diisopropylethylamie to give the
    title compound.
    Yield (Purity): 88% (>99%).
    HPLC: (36% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 270 nm (pH 7), ϵ = 13700 (est.).
    ESI-MS (+): m/z calculated for C23H31N7O8PS ([M + H]+): 596.17, found: 596.
    ESI-MS (−): m/z calculated for C23H29N7O8PS ([M − H]): 594.15, found, 594.
     73
    Figure US20210317156A1-20211014-C00481
    8-Ethylbutyrylthioguanosine-3′,5′-cyclic monophosphate (8-EButT-cGMP)
    Using general procedure D, 8-T-cGMP was reacted with ethyl 4-bromobutyrate to give to
    title compound.
    Yield (Purity): 54% (>99%).
    HPLC: (30% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 275 nm (ph 7), ϵ = 13700 (est.).
    ESI-MS: (+): m/z calculated for C16H23N5O9PS ([M + H]+): 492.10, found: 492.
    ESI-MS: (−): m/z calculated for C16H21N5O9PS ([M − H]): 490.08, found: 490.
     74
    Figure US20210317156A1-20211014-C00482
    8-Methylpropionylthioguanosine-3′,5′-cyclic monophosphate (8-MPT-cGMP)
    Using general procedure D, 8-T-cGMP was reacted with methyl 3-bromopropionate and
    equivalents were increased stepwise (methyl 3-bromopropionate up to 9 eq, N,N-
    diisopropylethylamine up to 8 eq) to improve the yield of the title compound.
    Yield (Purity): 47% (>99%).
    HPLC: (15% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 275 nm (pH 7), ϵ = 13700 (est.).
    ESI-MS (+): m/z calculated for C14H19N5O9PS ([M + H]+): 464.06, found: 464.
    ESI-MS (−): m/z calculated for C14H17N5O9PS ([M − H]): 462.05, found: 462.
     75
    Figure US20210317156A1-20211014-C00483
    8-Methylvalerianylthioguanosine-3′,5′-cyclic monophosphate (8-MValT-cGMP)
    Using general procedure D, 8-T-cGMP was reacted with methyl 5-bromovalerateto give the
    title compound.
    Yield (Purity): 75% (>99%).
    HPLC: (15% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 275 nm (pH 7), ϵ = 13700 (est.).
    ESI-MS (+): m/z calculated for C16H23N5O9PS ([M + H]+): 492.10, found: 492.
    ESI-MS (−): m/z calculated for C16H21N5O9PS ([M − H]): 490.08, found: 490.
     76
    Figure US20210317156A1-20211014-C00484
    8-Methoxyethylamidobutylthio-guanosine-3′,5′-cyclic monophosphate (8-
    MeOEAmdBuT-cGMP)
    Using general procedure H, 8-CBuT-cGMP was reacted with 2-methoxyethylamine to give
    the title compound.
    Yield (Purity): 58% (>99%).
    HPLC: (30% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 276 nm (pH 7), ϵ = 13700 (est.).
    ESI-MS (+): m/z calculated for C18H28N6O9PS ([M + H]+): 535.14, found 535.
    ESI-MS (−): m/z calculated for C18H26N6O9PS ([M − H]): 533.12, found 533.
     77
    Figure US20210317156A1-20211014-C00485
    8-Methoxyethylamidomethylthio-guanosine-3′,5′-cyclic monophosphate (8-
    MeOEAmdMT-cGMP)
    Using general procedure H, 8-CMT-cGMP was reacted with 2-methoxyethylamine to give
    the title compound.
    Yield (Purity): 65% (>99%).
    HPLC: (15% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 275 nm (pH 7), ϵ = 13700 (est.).
    ESI-MS (+): m/z calculated for C15H22N6O9PS ([M + H]+): 493.09, found: 493.
    ESI-MS (−): m/z calculated for C15H20N6O9PS ([M − H]): 491.08, found: 491.
     78
    Figure US20210317156A1-20211014-C00486
    8-Methoxyethylamidoethylthio-guanosine-3′,5′-cyclic monophosphate (8-
    MeOEAmdEt-cGMP)
    Using general procedure H, 8-CET-cGMP was reacted with 2-methoxyethylamine to give
    the title compound.
    Yield (Purity): 65% (>99%).
    HPLC: (21% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 275 nm (pH 7), ϵ = 13700 (est.).
    ESI-MS (+): m/z calculated for C16H24N6O9PS ([M + H]+): 507.11, found: 507.
    ESI-MS (−): m/z calculated for C16H22N6O9PS ([M − H]): 505.09, found: 505.
     79
    Figure US20210317156A1-20211014-C00487
    8-Phenylamidomethylthio-guanosine-3′,5′-cyclic monophosphate (8-PAmdMT-
    cGMP)
    Using general procedure H, 8-CMT-cGMP was reacted with aniline to give the title
    compound.
    Yield (Purity): 80% (>99%).
    HPLC: (32% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 273 nm (pH 7), ϵ = 13700 (est.).
    ESI-MS (+): m/z calculated for C18H20N6O8PS ([M + H]+): 511.08, found: 511.
    ESI-MS (−): m/z calculated for C18H18N6O8PS ([M − H]): 509.06, found: 509.
     80
    Figure US20210317156A1-20211014-C00488
    8-Phenylpropylthioguanosine-3′,5′-cyclic monophosphate (8-PPrT-cGMP)
    Using general procedure D, 8-T-cGMP was reacted with 1-Bromo-3-phenylpropane at 90° C.
    to give the title compound.
    Yield (Purity): 68% (>99%).
    HPLC: (49% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 276 nm (pH 7), ϵ = 13700 (est.).
    ESI-MS (+): m/z calculated for C19H23N5O7PS ([M + H]+): 496.11, found: 496.
    ESI-MS (−): m/z calculated for C19H21N5O7PS ([M − H]): 494.09, found: 494.
     81
    Figure US20210317156A1-20211014-C00489
    8-(3-Butynylthio)guanosine-3′,5′-cyclic monophosphate (8-(Bu(3-yne)T-cGMP)
    Using general procedure D, 8-T-cGMP was reacted with 4-bromo-1-butyne to give the title
    compound.
    Yield (Purity): 51% (>99%).
    HPLC: (30% MeOH, 10 mM TEAF buffer, pH 6.8).
    US-VIS: λmax = 275 nm (pH 7), ϵ = 13700 (est.).
    ESI-MS (+): m/z calculated for C14H17N5O7PS ([M + H]+): 430.06, found: 430.
    ESI-MS (+): m/z calculated for C14H15N5O7PS ([M − H]): 428.34, found: 428.
     82
    Figure US20210317156A1-20211014-C00490
    8-(4-Acetamidophenylthio)guanosine-3′,5′-cyclic monophosphate (8-pAcAmdPT-
    cGMP)
    Using general procedure A, 8-Br-cGMP was reacted with 4-acetamidothiophenol to give the
    title compound.
    Yield (Purity): 95% (>99%).
    HPLC: (35% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 275 nm (pH 7), ϵ = 21500 (est.).
    ESI-MS (+): m/z calculated for C18H20N6O8PS ([M + H]+): 511.08, found: 511.
    ESI-MS (−): m/z calculated for C18H18N6O8PS ([M − H]): 509.06, found: 509.
     83
    Figure US20210317156A1-20211014-C00491
    8-(4-Chlorophenylsulfonyl)guanosine-3′,5′-cyclic monophosphate (8-pCPS-cGMP)
    The title compound was synthesized from 8-pCPT-cGMP using general procedure O.
    Yield (Purity): 29% (>99%).
    HPLC: (19% MeCN, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 241 (276, 311) nm (pH 7), ϵ = 21500 (est.).
    ESI-MS (+): m/z calculated for C16H16ClN5O9PS ([M + H]+): 520.00, found: 520.
    ESI-MS (−): m/z calculated for C16H14ClN5O9PS ([M − H]): 517.99, found: 518.
     84
    Figure US20210317156A1-20211014-C00492
    8-(4-Chlorophenylsulfoxide)-guanosine-3′,5′-cyclic monophosphate (8-(pCPS(O)-
    cGMP)
    The title compound was synthesized from 8-pCPT-cGMP using general procedure P.
    Yield (Purity): 27% (>99%).
    HPLC: (28% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 275 nm (pH 7), ϵ = 21500 (est.).
    ESI-MS (+): m/z calculated for C16H16ClN5O8PS ([M + H]+): 504.01, found: 504.
    ESI-MS (−): m/z calculated for C16H14ClN5O8PS ([M − H]): 502.00, found: 502.
     85
    Figure US20210317156A1-20211014-C00493
    8-((2-Ethoxyethyl)-4-thiophenylthio)guanosine-3′,5′-cyclic monophosphate (8-(2-
    EOE)-pTPT-cGMP)
    Using general procedure D, 8-pTPT-cGMP was reacted with 2-Bromoethyl ethyl ether to
    give the title compound.
    Yield (Purity): 64% (>99%).
    HPLC: (48% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 276 nm (pH 7), ϵ = 21500 (est.).
    ESI-MS (+): m/z calculated for C20H25N5O8PS ([M + H]+): 558.09, found: 558.
    ESI-MS (−): m/z calculated for C20H23N5O8PS2 ([M − H]): 556.07, found: 556.
     86
    Figure US20210317156A1-20211014-C00494
    8-(4-Thiophenyl-4″-thiophenylthio)guanosine-3′,5′-cyclic monophosphate (8-pTP-
    pTPT-cGMP)
    Using general procedure B, 8-Br-cGMP was reacted with 4,4′-thiobisbenzenethiol to give
    the title compound.
    Yield (Purity): 13% (>99%).
    HPLC: (52% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 290 nm (pH 7), ϵ = 21500 (est.).
    ESI-MS (+): m/z calculated for C22H21N5O7PS3 ([M + H]+): 594.03, found: 594.
    ESI-MS (−): m/z calculated for C22H19N5O7PS3 ([M − H]): 592.02, found: 592.
     87
    Figure US20210317156A1-20211014-C00495
    8-(2-Azidoethylthio)guanosine-3′,5′-cyclic monophosphate (8-N3-ET-cGMP)
    The title compound was synthesized from 8-T-cGMP and 1,2-dibromoethane using general
    procedure Q.
    Yield (Purity): 54% (>99%).
    HPLC: (9% MeCN, 30 mM NaH2PO4 buffer, pH 6.8).
    UV-VIS: 275 nm (pH 7), ϵ = 13700 (est.).
    ESI-MS (+):(+): m/z calculated for C12H16N8O7PS ([M + H]+): 447.06, found: 447.
    ESI-MS (−): m/z calculated for C12H14N8O7PS ([M − H]): 445.04, found: 445.
     88
    Figure US20210317156A1-20211014-C00496
    8-(3-Aminopropyl)-(pentaethoxy)-methylamidomethylthio-guanosine-3′,5′-cyclic
    monophosphate (8-APr-(EO)5-MAmdMT-cGMP)
    Using general procedure K, 8-CMT-cGMP (1 eq) was reacted with NH2CH2-PEG5-
    (CH2)3NH2 (6 eq) to give the title compound.
    Yield (Purity): 39% (>95%).
    HPLC: (27% MeOH, 20 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 275 nm (pH 7), ϵ = 13700 (est.).
    ESI-MS (+): m/z calculated for C26H45N7O13PS ([M + H]+): 726.25, found: 726.
    ESI-MS (−): m/z calculated for C26H43N7O13PS ([M − H]): 724.24, found 724.
     89
    Figure US20210317156A1-20211014-C00497
    8-(2-Aminoethyl)-(octaethoxy)-amidomethylthioguanosine-3′,5′-cyclic
    monophosphate (8-AE-(EO)8-AmdMT-cGMP)
    Using general procedure K, 8-CMT-cGMP (1 eq) was reacted with NH2-PEG8-(CH2)2NH2
    (6 eq) to give the title compound.
    Yield (Purity): 53% (>99%).
    HPLC: (10% MeCN, 50 mM NaH2PO4 buffer, pH 6.8).
    UV-VIS: λmax = 275 nm (pH 7), ϵ = 13700 (est.).
    ESI-MS (+): m/z calculated for C30H53N7O16PS ([M + H]+): 830.30, found: 830.
    ESI-MS (−): m/z calculated for C30H51N7O16PS ([M − H]): 828.29, found: 828.
     90
    Figure US20210317156A1-20211014-C00498
    8-(2-Bromoethyl)-(pentaethoxy)-(4-thiophenylthio)guanosine-3′,5′-cyclic
    monophosphate (8-BrE-(EO)5-pTPT-cGMP)
    Using general procedure E, 8-pTPT-cGMP was reacted with Br-PEG5-CH2CH2Br. The title
    compound was isolated beside the dimeric analogue.
    Yield (Purity): 43% (>99%).
    HPLC: (52% MeOH, 10 mM TEAF buffer, pH 6.8).
    HPLC (analytical): (45% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 276 nm (pH 7), ϵ = 21500 (est.).
    ESI-MS (+): m/z calculated for C28H39BrN5O12PS2Na ([M + Na]+): 834.09, found: 834.
    ESI-MS (−): m/z calculated for C28H38BrN5O12PS2 ([M − H]): 810.09, found: 810.
     91
    Figure US20210317156A1-20211014-C00499
    8-(4-(Propargyloxy-(hexaethoxy)-methyl)-[1,2,3]-triazole-1-yl)-
    methylamidoethylthioguanosine-3′,5′-cyclic monophosphate (8-(4-(PargO-(EO)6-
    Me)-[1,2,3]-Tz-1)-MAmdET-cGMP)
    Using general procedure S, 8-N3-MAmdET-cGMP (1 eq) was reacted with bis-propargyl-
    PEG7 (2 eq) to give the title compound. Conditions were chosen to additionally obtain the
    dimeric analogue (G 045).
    Yield (Purity): 38% (>99%).
    HPLC: (14% MeCN, 30 mM TEAF buffer, pH 6.8 then (after sepperation of dimer)
    15% MeCN, 10 mM TEAF buffer, pH 6.8).
    HPLC (analytical): (15% MeCN, 20 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 276 nm (pH 7), ϵ = 13700 (est.).
    ESI-MS (+): m/z calculated for C32H49N9O15PS ([M + Na]+): 862.28, found: 862.
    ESI-MS (−): m/z calculated for C32H47N9O15PS ([M − H]): 860.27, found: 860.
     92
    Figure US20210317156A1-20211014-C00500
    8-(4-Carboxyphenylthio)guanosine-3′,5′-cyclic monophosphate (8-pCarbT-cGMP)
    Using general procedure C, 8-Br-cGMP (1 eq) was reacted with 4-mercaptobenzoic acid
    (2 eq) at 60° C. in the absence of NaOH to give the title compound.
    Yield (Purity): 67% (>99%).
    HPLC: (9% MeCN, 20 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 277 nm (pH 7), ϵ = 21500 (est.).
    ESI-MS (−): m/z calculated for C17H15N5O9PS ([M − H]): 496.03, found: 496.
     93
    Figure US20210317156A1-20211014-C00501
    8-(4-Hydroxyphenylsulfonyl)-guanosine-3′,5′-cyclic monophosphate (8-pHPS-
    cGMP)
    The title compound was synthesized from 8-pHPT-cGMP using general procedure O.
    Yield (Purity): 38% (>99%).
    HPLC: (30% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 276 (310) nm (pH 7), ϵ = 21500 (est.).
    ESI-MS (+): m/z calculated for C16H17N5O10PS ([M + H]+): 502.04, found: 502.
    ESI-MS (−): m/z calculated for C16H15N5O10PS ([M − H]): 500.03, found: 500.
     94
    Figure US20210317156A1-20211014-C00502
    8-(4-Isopropylphenylsulfonyl)-guanosine-3′,5′-cyclic monophosphate (8-pIPrPS-
    cGMP)
    The title compound was synthesized from 8-pIPrPT-cGMP using general procedure O.
    Yield (Purity): 30% (>99%).
    HPLC: (40% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 276 (239, 306) nm (pH 7), ϵ = 21500 (est.).
    ESI-MS (+): m/z calculated for C19H23N5O9PS ([M + H]+): 528.10, found: 528.
    ESI-MS (−): m/z calculated for C19H21N5O9PS ([M − H]): 526.08, found: 526.
     95
    Figure US20210317156A1-20211014-C00503
    8-(4-Methylcarboxyphenylthio)-guanosine-3′,5′-cyclic monophosphate (8-
    pMeCarbPT-cGMP)
    Using general procedure A, 8-Br-cGMP (1 eq) was reacted with methyl 4-mercaptobenzoate
    (4 eq) at 60° C. replacing NaOH by borate buffer (100 mM, pH 10.4, ex) to give the title
    compound.
    Yield (Purity): 20% (>99%).
    HPLC: (22% MeCN, 50 mM NaH2PO4 buffer, pH 6.7).
    UV-VIS: λmax = 277 nm (pH 7), ϵ = 21500 (est.).
    ESI-MS (+): m/z calculated for C18H19N5O9PS ([M + H]+): 512.06, found: 512.
    ESI-MS (−): m/z calculated for C18H17N5O9PS ([M − H]): 510.05, found: 510.
     96
    Figure US20210317156A1-20211014-C00504
    8-Methylsulfonylguanosine-3′,5′-cyclic monophosphate (8-MSulf-cGMP)
    The title compound was synthesized from 8-MeS-cGMP using general procedure O.
    Yield (Purity): 35% (>99%).
    HPLC: (10% MeOH, 15 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 274 nm (pH 7), ϵ = 13700 (est.).
    ESI-MS (+): m/z calculated for C11H15N5O9PS ([M + H]+): 424.03, found: 424.
    ESI-MS (−): m/z calculated for C11H13N5O9PS ([M − H]): 422.02, found: 422.
     97
    Figure US20210317156A1-20211014-C00505
    8-(1-Bromo-2-naphthyl)methylthioguanosine-3′,5′-cyclic monophosphate (8-(1-Br-
    2-N)MT-cGMP)
    Using general procedure D, 8-T-cGMP was reacted with 1-bromo-2-
    bromomethylnaphthalene to give the title compound.
    Yield (Purity): 40% (>99%).
    HPLC: (27% MeCN, 50 mM NaH2PO4 buffer, pH 6.7).
    UV-VIS: λmax = 280 nm (pH 7), ϵ = 21500 (est.).
    ESI-MS (+): m/z calculated for C21H20BrN5O7PS ([M + H]+): 596.00, found: 596.
    ESI-MS (−): m/z calculated for C21H18BrN5O7PS ([M − H]): 593.98, found: 594.
     98
    Figure US20210317156A1-20211014-C00506
    8-(2-(1-Benzyl-[1,2,3]-triazole-4-yl)-ethylthio)guanosine-3′,5′-cyclic
    monophosphate (8-(1-Bn-[1,2,3]-Tz-4)-ET-cGMP)
    Using general procedure R, 8-Bu(3-yne)T-cGMP was reacted with benzyl azide to give the
    title compound.
    Yield (Purity): 30% (>98%).
    HPLC: (35% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 278 nm (pH 7), ϵ = 13700 (est.).
    ESI-MS (+): m/z calculated for C21H24N8O7PS ([M + H]+): 563.14, found: 563.
    ESI-MS (−): m/z calculated for C21H22N8O7PS ([M − H]): 561.11, found: 561.
     99
    Figure US20210317156A1-20211014-C00507
    8-(3-Fluoro-5-methoxybenzylthio)guanosine-3′,5′-cyclic monophosphate (8-(3-F-5-
    MeO)BT-cGMP)
    Using general procedure D, 8-T-cGMP was reacted with 3-fluoro-5-methoxybenzyl bromide
    to give the title compound.
    Yield (Purity): 40% (>99%).
    HPLC: (22% MeCN, 50 mM NaH2PO4 buffer, pH 6.7).
    UV-VIS: λmax = 278 nm (pH 7), ϵ = 21500 (est.).
    ESI-MS (+): m/z calculated for C18H20FN5O8PS ([M + H]+): 516.07, found: 516.
    ESI-MS (−): m/z calculated for C18H18FN5O8PS ([M − H]): 514.06, found: 514.
    100
    Figure US20210317156A1-20211014-C00508
    8-Pentafluorobenzylthioguanosine-3′,5′-cyclic monophosphate (8-PFBT-cGMP)
    Using general procedure D, 8-T-cGMP was reacted with 2,3,4,5,6-pentafluorobenzyl
    bromide to give the title compound.
    Yield (Purity): 35% (>99%).
    HPLC: (27% MeCN, 50 mM NaH2PO4 buffer, pH 6.7).
    UV-VIS: λmax = 278 nm (pH 7), ϵ = 21500 (est.).
    ESI-MS (+): m/z calculated for C17H14F5N5O7PS ([M + H]+): 558.03, found: 558.
    ESI-MS (−): m/z calculated for C17H12F5N5O7PS ([M − H]): 556.01, found: 556.
    101
    Figure US20210317156A1-20211014-C00509
    8-Triphenyliminophosphoranyl-guanosine-3′,5′-cyclic monophosphate (8-Ph3PN-
    cGMP)
    The title compound was synthesized from 8-N3-cGMP using general procedure W.
    Yield (Purity): 18% (>99%).
    HPLC: (26% MeCN, 20 mM NaH2PO4 buffer, pH 6.8).
    UV-VIS: λmax = 267 nm (pH 7), ϵ = 13700 (est.).
    ESI-MS (+): m/z calculated for C28H27N6O7P2 ([M + H]+): 621.14, found: 621.
    ESI-MS (−): m/z calculated for C28H25N6O7P2 ([M − H]): 619.13, found: 619.
    102
    Figure US20210317156A1-20211014-C00510
    8-(4-Chlorophenyl)guanosine-3′,5′-cyclic monophosphate (8-pCP-cGMP)
    Using general procedure X, 8-Br-cGMP was reacted with 4-chlorophenylboronic acid to give
    the title compound.
    Yield (Purity): 10% (>99%).
    HPLC: (17% MeCN, 10 mM TEAF buffer, pH 6.8).
    US-VIS: λmax = 282 nm (pH 7), ϵ = 21500 (est.).
    ESI-MS (+): m/z calculated for C16H16ClN5O7P ([M + H]+): 456.05, found: 456.
    ESI-MS (−): m/z calculated for C16H14ClN5O7P ([M − H]): 454.03, found: 454.
    103
    Figure US20210317156A1-20211014-C00511
    8-(4-Fluorophenyl)guanosine-3′,5′-cyclic monophosphate (8-pFP-cGMP)
    Using general procedure X, 8-Br-cGMP was reacted with 4-fluorophenylboronic acid to give
    the title compound.
    Yield (Purity): 54% (>99%).
    HPLC: (31% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 280 nm (pH 7), ϵ = 21500 (est.).
    ESI-MS (+): m/z calculated for C16H16FN5O7P ([M + H]+): 440.08, found: 440.
    ESI-MS (−): m/z calculated for C16H14FN5O7P ([M − H]): 438.06, found: 438.
    104
    Figure US20210317156A1-20211014-C00512
    8-(2-Furyl)guanosine-3′,5′-cyclic monophosphate (8-(2-Fur)-cGMP)
    Using general procedure X, 8-Br-cGMP was reacted with 2-furylboronic acid to give the title
    compound.
    Yield (Purity): 40% (>99%).
    HPLC: (23% MeOH, 15 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 297 nm (pH 7), ϵ = 21500 (est.).
    ESI-MS (+): m/z calculated for C14H15N5O8P ([M + H]+): 412.07, found: 412.
    ESI-MS (−): m/z calculated for C14H13N5O8P ([M − H]): 410.05, found: 410.
    105
    Figure US20210317156A1-20211014-C00513
    8-(4-Hydroxyphenyl)guanosine-3′,5′-cyclic monophosphate (8-pHP-cGMP)
    Using general procedure X, 8-Br-cGMP was reacted with 4-hydroxyphenylboronic acid to
    give the title compound.
    Yield (Purity): 63% (>99%).
    HPLC: (21% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 282 nm (pH 7), ϵ = 21500 (est.).
    ESI-MS (+): m/z calculated for C16H17N5O8P ([M + H]+): 438.08, found: 438.
    ESI-MS (−): m/z calculated for C16H15N5O8P ([M − H]): 436.07, found: 436.
    106
    Figure US20210317156A1-20211014-C00514
    8-(4-Isopropylphenyl)guanosine-3′,5′-cyclic monophosphate (8-pIPrP-cGMP)
    Using general procedure X, 8-Br-cGMP was reacted with 4-isopropylphenylboronic acid to
    give the title compound.
    Yield (Purity): 33% (>99%).
    HPLC: (22% MeCN, 50 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 281 nm (ph 7), ϵ = 21500 (est.).
    ESI-MS (+): m/z calculated for C19H23N5O7P ([M + H]+): 464.13, found: 464.
    ESI-MS (−): m/z calculated for C19H21N5O7P ([M − H]): 462.12, found: 462.
    107
    Figure US20210317156A1-20211014-C00515
    8-Phenylguanosine-3′,5′-cyclic monophosphate (8-Phe-cGMP)
    Using general procedure X, 8-Br-cGMP was reacted with phenylboronic acid to give the title
    compound.
    2Yield (Purity): 79% (>99%).
    HPLC: (31% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 281 nm (pH 7), ϵ = 21500 (est.).
    ESI-MS (+): m/z calculated for C16H17N5O7P ([M + H]+): 422.09, found: 422.
    ESI-MS (−): m/z calculated for C16H15N5O7P ([M − H]): 420.07, found: 420.
    108
    Figure US20210317156A1-20211014-C00516
    β-Phenyl-1,N2-etheno-8-thioguanosine-3′,5′-cyclic monophosphate (PET-8-T-
    cGMP)
    Using modified general procedure C, NaSH (19 mM, 208 eq) in NaHCO3-Buffer (pH 8.7)
    was added to 8-Br-PET-cGMP (19 mM, 1 eq) dissolved in NaHCO3-buffer (pH 8.7) and
    reacted at 75° C. to give the title compound.
    Yield (Purity): 60% (>99%).
    HPLC: (21% MeCN, 50 mM NaH2PO4 buffer, pH 6.7).
    UV-VIS: λmax = 288 nm (pH 7), ϵ = 40000 (est.).
    ESI-MS (+): m/z calculated for C18H16N5O7PSNa ([M + Na]+): 500.04, found: 500.
    ESI-MS (−): m/z calculated for C18H15N5O7PS ([M − H]): 476.04, found: 476.
    109
    Figure US20210317156A1-20211014-C00517
    8-(2-Aminophenylthio)-β-phenyl-1,N2-ethenoguanosine-3′,5′-cyclic
    monophosphate (8-oAPT-PET-cGMP)
    Using general procedure A, 8-Br-PET-cGMP (1 eq) was reacted with 2-aminothiophenol
    (8 eq) in the presence of NaOH (2 eq) to give the title compound.
    Yield (Purity): 57% (>99%).
    HPLC: (22% MeCN, 50 mM NaH2PO4 buffer, pH 6.7).
    UV-VIS: λmax = 273 nm (pH 7), ϵ = 40000 (est.).
    ESI-MS (+): m/z calculated for C24H22N6O7PS ([M + H]+): 569.10, found: 569.
    ESI-MS (−): m/z calculated for C24H20N6O7PS ([M − H]): 567.08, found: 567.
    110
    Figure US20210317156A1-20211014-C00518
    8-Cyclohexylthio-β-phenyl-1,N2-ethenoguanosine-3′,5′-cyclic monophosphate (8-
    cHeT-PET-cGMP)
    Using general procedure A, 8-Br-PET-cGMP (1 eq) was reacted with Cyclohexanethiol
    (6.5 eq) in the presence of NaOH (2 eq) to give the title compound.
    Yield (Purity): 20% (>99%).
    HPLC: (22% MeCN, 50 mM NaH2PO4 buffer, pH 6.7).
    UV-VIS: λmax = 275 nm (pH 7), ϵ = 40000 (est.).
    ESI-MS (+): m/z calculated for C24H27N5O7PS ([M + H]+): 560.14, found: 560.
    ESI-MS (−): m/z calculated for C24H25N5O7PS ([M − H]): 558.12, found: 558.
    111
    Figure US20210317156A1-20211014-C00519
    8-Cyclopentylthio-β-phenyl-1,N2-ethenoguanosine-3′,5′-cyclic monophosphate
    (8-cPeT-PET-cGMP)
    Using general procedure A, 8-Br-PET-cGMP (1 eq) was reacted with cyclopentanethiol
    (8 eq) in the presence of NaOH (2 eq) to give the title compound.
    Yield (Purity): 20% (>99%).
    HPLC: (22% MeCN, 50 mM NaH2PO4 buffer, pH 6.7).
    UV-VIS: λmax = 276 nm (pH 7), ϵ = 40000 (est.).
    ESI-MS (+): m/z calculated for C23H25O7PS ([M + H]+): 546.12, found: 546.
    ESI-MS (−): m/z calculated for C23H23N5O7PS ([M − H]): 544.11, found: 544.
    112
    Figure US20210317156A1-20211014-C00520
    8-(4-Methylphenylthio)-β-phenyl-1,N2-ethenoguanosine-3′,5′-cyclic
    monophosphate (8-pMePT-PET-cGMP)
    Using general procedure A, 8-Br-PET-cGMP (1 eq) was reacted with p-toluenethiol (8 eq) in
    the presence of NaOH (2 eq) to give the title compound.
    Yield (Purity): 70% (>99%).
    HPLC: (22% MeCN, 50 mM NaH2PO4, pH 6.7).
    UV-VIS: λmax = 275 nm (pH 7), ϵ = 40000 (est.).
    ESI-MS (+): m/z calculated for C25H23N5O7PS ([M + H]+): 568.11, found: 568.
    ESI-MS (−): m/z calculated for C25H21N5O7PS ([M − H]): 566.09, found: 566.
    113
    Figure US20210317156A1-20211014-C00521
    8-(4-Methoxyphenylthio)-β-phenyl-1,N2-ethenoguanosine-3′,5′-cyclic
    monophosphate (8-pMeOPT-PET-cGMP)
    Using general procedure A, 8-Br-PET-cGMP (1 eq) was reacted with 4-
    methoxybenzenethiol (8 eq) in the presence of NaOH (2 eq) to give the title compound.
    Yield (Purity): 82% (>99%).
    HPLC: (22% MeCN, 50 mM NaH2PO4 buffer, pH 6.7).
    UV-VIS: λmax = 274 nm (pH 7), ϵ = 40000 (est.).
    ESI-MS (+): m/z calculated for C25H23N5O8PS ([M + H]+): 584.10, found: 584.
    ESI-MS (−): m/z calculated for C25H21N5O8PS ([M − H]): 582.08, found: 582.
    114
    Figure US20210317156A1-20211014-C00522
    8-(3-(2-Methyl)fuanyl)thio-β-phenyl-1,N2-ethenoguanosine-3′,5′-cyclic
    monophosphate (8-(3-(2-Me)-FU)T-PET-cGMP)
    Using general procedure A, 8-Br-PET-cGMP (1 eq) was reacted with 2-methyl-3-furanethiol
    (6 eq) in the presence of NaOH (2 eq) to give the title compound.
    Yield (Purity): 70% (>99%).
    HPLC: (22% MeCN, 50 mM NaH2PO4 buffer, pH 6.7).
    UV-VIS: λmax = 273 nm (pH 7), ϵ = 40000 (est.).
    ESI-MS (+): m/z calculated for C23H21N5O8PS ([M + H]+): 558.08, found: 558.
    ESI-MS (−): m/z calculated for C23H19N5O8PS ([M − H]): 556.07, found: 556.
    115
    Figure US20210317156A1-20211014-C00523
    8-(7-(4-Methyl)coumarinyl)thio-β-phenyl-1,N2-ethenoguanosine-3′,5′-cyclic
    monophosphate (8-(7-(4-Me)-Cou)T-PET-cGMP)
    Using general procedure A, 8-Br-PET-cGMP (1 eq) was reacted with 7-mercapto-4-
    methylcoumarin (6 eq) in the presence of NaOH (2 eq) to give the title compound.
    Yield (Purity): 80% (>99%).
    HPLC: (22% MeCN, 50 mM NaH2PO4 buffer, pH 6.7).
    UV-VIS: λmax = 277 nm (pH 7), ϵ = 40000 (est.).
    ESI-MS (+): m/z calculated for C28H23N5O9PS ([M + H]+): 636.09, found: 636.
    ESI-MS (−): m/z calculated for C28H21N5O9PS ([M − H]): 634.08, found: 634.
    116
    Figure US20210317156A1-20211014-C00524
    8-(2-Naphthyl)thio-β-phenyl-1,N2-ethenoguanosine-3′,5′-cyclic monophosphate
    (8-(2-N)T-PET-cGMP)
    Using general procedure A, 8-Br-PET-cGMP (1 eq) was reacted with 2-naphthalenethiol
    (6 eq) in the presence of NaOH (2 eq) to give the title compound.
    Yield (Purity): 30% (>99%).
    HPLC: (22% MeCN, 50 mM NaH2PO4 buffer, pH 6.7).
    UV-VIS: λmax = 275 nm (pH 7), ϵ = 40000 (est.).
    ESI-MS (+): m/z calculated for C28H23N5O7PS ([M + H]+): 604.11, found: 604.
    ESI-MS (−): m/z calculated for C28H21N5O7PS ([M − H]): 602.09, found: 602.
    117
    Figure US20210317156A1-20211014-C00525
    β-Phenyl-1,N2-etheno-8-(2-thiophenyl)thioguanosine-3′,5′-cyclic monophosphate
    (PET-8-(2-Tp)T-cGMP)
    Using general procedure A, 8-Br-PET-cGMP (1 eq) was reacted with 2-thiophenethiol (6 eq)
    in the presence of NaOH (2 eq) to give the title compound.
    Yield (Purity): 60% (>99%).
    HPLC: (22% MeCN, 50 mM NaH2PO4 buffer, pH 6.7).
    UV-VIS: λmax = 275 nm (pH 7), ϵ = 40000 (est.).
    ESI-MS (+): m/z calculated for C22H19N5O7PS2 ([M + H]+): 560.05, found: 560.
    ESI-MS (−): m/z calculated for C22H17N5O7PS2 ([M − H]): 558.03, found: 558.
    118
    Figure US20210317156A1-20211014-C00526
    β-Phenyl-1,N2-etheno-8-(2-phenylethyl)thioguanosine-3′,5′-cyclic
    monophosphate (PET-8-PhEtT-cGMP)
    Using general procedure A, 8-Br-PET-cGMP (1 eq) was reacted with 2-phenylethanethiol
    (6 eq) in the presence of NaOH (2 eq) to give the title compound.
    Yield (Purity): % (>99%).
    HPLC: (22% MeCN, 50 mM NaH2PO4 buffer, pH 6.7).
    UV-VIS: λmax = 276 nm (pH 7), ϵ = 40000 (est.).
    ESI-MS (+): m/z calculated for C26H25N5O7PS ([M + H]+): 581.12, found: 582.
    ESI-MS (−): m/z calculated for C26H23N5O7PS ([M − H]): 580.11, found: 580.
    119
    Figure US20210317156A1-20211014-C00527
    8-Carboxymethylthio-β-phenyl-1,N2-ethenoguanosine-3′,5′-cyclic
    monophosphate (8-CMT-PET-cGMP)
    Using general procedure C, 8-Br-PET-cGMP was reacted with mercaptoacetic acid to give
    the title compound.
    Yield (Purity): 68% (>99%).
    HPLC: (14% MeCN, 50 mM NaH2PO4 buffer, pH 6.8).
    UV-VIS: λmax = 273 nm (pH 7), ϵ = 40000 (est.).
    ESI-MS (+): m/z calculated for C20H19N5O9PS ([M + H]+): 536.06, found: 536.
    ESI-MS (−): m/z calculated for C20H17N5O9PS ([M − H]): 534.05, found: 534.
    120
    Figure US20210317156A1-20211014-C00528
    8-Amidomethylthio-β-phenyl-1,N2-ethenoguanosine-3′,5′-cyclic monophosphate
    (8-AmdMT-PET-cGMP)
    In a one pot synthesis 8-T-cGMP was reacted with 2-bromoacetamide following general
    procedure D to give 8-AmdMT-cGMP, which was transformed to the title compound by
    applying general procedure Y.
    Yield (Purity): 19% (>99%).
    HPLC: (35% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 273 nm (pH 7), ϵ = 40000 (est.).
    ESI-MS (+): m/z calculated for C20H20N6O8PS ([M + H]+): 535.08, found: 535.
    ESI-MS (−): m/z calculated for C20H18N6O8PS ([M − H]): 533.06, found: 533.
    121
    Figure US20210317156A1-20211014-C00529
    8-(4-Boronatephenylthio)-β-phenyl-1,N2-ethenoguanosine-3′,5′-cyclic
    monophosphate (8-(pB(OH)2P)T-PET-cGMP)
    Using general procedure A, 8-Br-PET-cGMP was reacted with 4-mercaptophenylboronic
    acid to give the title compound.
    Yield (Purity): 25% (>99%).
    HPLC: (52% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 276 nm (pH 7), ϵ = 40000 (est.).
    ESI-MS (+): m/z calculated for C24H22BN5O9PS ([M + H]+): 598.10, found: 598.
    ESI-MS (−): m/z calculated for C24H20BN5O9PS ([M − H]): 596.08, found: 596.
    122
    Figure US20210317156A1-20211014-C00530
    8-Ethylthio-β-phenyl-1,N2-ethenoguanosine-3′,5′-cyclic monophosphate (8-ET-
    PET-cGMP)
    Using general procedure A, 8-Br-PET-cGMP (1 eq) was reacted with ethanethiol (12 eq) in
    a tube with screw cap at 70° C. to give the title compound.
    Yield (Purity): 46% (>99%).
    HPLC: (15% MeCN, 50 mM NaH2PO4 buffer, pH 6.7).
    UV-VIS: λmax = 274 nm (pH 7), ϵ = 40000 (est.).
    ESI-MS (+): m/z calculated for C20H21N5O7PS ([M + H]+): 506.09, found: 506.
    ESI-MS (−): m/z calculated for C20H19N5O7PS ([M − H]): 504.07, found: 504.
    123
    Figure US20210317156A1-20211014-C00531
    8-(4-Fluorophenylthio)-β-phenyl-1,N2-ethenoguanosine-3′,5′-cyclic
    monophosphate (8-pFPT-PET-cGMP)
    Using general procedure A, 8-Br-PET-cGMP (1 eq) was reacted with 4-fluorothiophenol
    (4 eq) in the presence of NaOH (2 eq) to give the title compound.
    Yield (Purity): 36% (>99%).
    HPLC: (22% MeCN, 50 mM NaH2PO4 buffer, pH 6.7).
    UV-VIS: λmax = 276 nm (pH 7), ϵ = 40000 (est.).
    ESI-MS (+): m/z calculated for C24H20FN5O7PS ([M + H]+): 572.08, found: 572.
    ESI-MS (−): m/z calculated for C24H18FN5O7PS ([M − H]): 570.06, found: 570.
    124
    Figure US20210317156A1-20211014-C00532
    8-Methylthio-β-phenyl-1,N2-ethenoguanosine-3′,5′-cyclic monophosphate (8-
    MeS-PET-cGMP)
    Using general procedure A, 8-Br-PET-cGMP (1 eq) was reacted with sodium
    methanethiolate (4 eq) to give the title compound.
    Yield (Purity): 75% (>99%).
    HPLC: (15% MeCN, 50 mM NaH2PO4 buffer, pH 6.7).
    UV-VIS: λmax = 272 nm (pH 7), ϵ = 40000 (est.).
    ESI-MS (+): m/z calculated for C19H19N5O7PS ([M + H]+): 492.07, found: 492.
    ESI-MS (−): m/z calculated for C19H17N5O7PS ([M − H]): 490.06, found: 490.
    125
    Figure US20210317156A1-20211014-C00533
    β-Phenyl-1,N2-etheno-8-propylthio-guanosine-3′,5′-cyclic monophosphate (PET-
    8-PrT-cGMP)
    Using general procedure A, 8-Br-PET-cGMP (1 eq) was reacted with propanethiol (16 eq) in
    a tube with screw cap at 70° C. to give the title compound.
    Yield (Purity): 46% (>99%).
    HPLC: (15% MeCN, 50 mM NaH2PO4 buffer, pH 6.7).
    UV-VIS: λmax = 273 nm (pH 7), ϵ = 40000 (est.).
    ESI-MS (+): m/z calculated for C21H23N5O7PS ([M + H]+): 520.11, found: 521.
    ESI-MS (−): m/z calculated for C21H21N5O7PS ([M − H]): 518.09, found: 518.
    126
    Figure US20210317156A1-20211014-C00534
    8-Azidoethylthio-β-phenyl-1,N2-ethenoguanosine-3′,5′-cyclic monophosphate (8-
    N3-ET-PET-cGMP)
    The title compound was synthesized from PET-8-T-cGMP and 1,2-dibromoethane using
    general procedure Q.
    Yield (Purity): 41% (>99%).
    HPLC: (23% MeCN, 40 mM NaH2PO4 buffer, pH 6.8).
    UV-VIS: λmax = 273 nm (pH 7), ϵ = 40000 (est.).
    ESI-MS (+): m/z calculated for C20H20N8O7PS ([M + H]+): 547.09, found: 547.
    ESI-MS (−): m/z calculated for C20H18N8O7PS ([M − H]): 545.08, found: 545.
    127
    Figure US20210317156A1-20211014-C00535
    β-Phenyl-1,N2-etheno-8-(4-trifluoromethylphenylthio)guanosine-3′,5′-cyclic
    monophosphate (PET-8-pTFMePT-cGMP)
    Using general procedure A, 8-Br-PET-cGMP (1 eq) was reacted with
    4-(trifluoromethyl)thiophenol (4 eq) in the presence of NaOH (2 eq) to give the title
    compound.
    Yield (Purity): 60% (>99%).
    HPLC: (22% MeCN, 50 mM NaH2PO4 buffer, pH 6.7).
    UV-VIS: λmax = 276 nm (pH 7), ϵ = 40000 (est.).
    ESI-MS (+): m/z calculated for C25H20F3N5O7PS ([M + H]+): 622.08, found: 622.
    ESI-MS (−): m/z calculated for C25H18F3N5O7PS ([M − H]): 620.06, found: 620.
    128
    Figure US20210317156A1-20211014-C00536
    8-(4-Chlorophenylsulfonyl)-β-phenyl-1,N2-ethenoguanosine-3′,5′-cyclic
    monophosphate (8-pCPS-PET-cGMP)
    Using general procedure Y, 8-pCPS-cGMP was reacted with 2-bromoacetophenone to give
    the title compound.
    Yield (Purity): 45% (>99%).
    HPLC: (30% MeCN, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 287 nm (pH 7), ϵ = 40000 (est.).
    ESI-MS (+): m/z calculated for C24H20ClN5O9PS ([M + H]+): 620.04, found: 620.
    ESI-MS (−): m/z calculated for C24H18ClN5O9PS ([M − H]): 618.03, found: 618.
    129
    Figure US20210317156A1-20211014-C00537
    8-(4-Isopropylphenylthio)-β-phenyl-1,N2-ethenoguanosine-3′,5′-cyclic
    monophosphate (8-pIPrPT-PET-cGMP)
    Using general procedure A, 8-Br-PET-cGMP (1 eq) was reacted with 4-isopropylthiophenol
    (4 eq) in the presence of NaOH (2 eq) at 60° C. to give the title compound.
    Yield (Purity): 20% (>99%).
    HPLC: (27% MeCN, 50 mM NaH2PO4 buffer, pH 6.8).
    UV-VIS: λmax = 274 nm (pH 7), ϵ = 40000 (est.).
    ESI-MS (+): m/z calculated for C27H27N5O7PS ([M + H]+): 596.14, found: 596.
    ESI-MS (−): m/z calculated for C27H25N5O7PS ([M − H]): 594.12, found: 594.
    130
    Figure US20210317156A1-20211014-C00538
    8-(4-Isopropylphenylsulfonyl)-β-phenyl-1,N2-ethenoguanosine-3′,5′-cyclic
    monophosphate (8-pIPrPS-PET-cGMP)
    Using general procedure Y, 8-pIPrPS-cGMP was reacted with 2-bromoacetophenone to
    give the title compound.
    Yield (Purity): 38% (>99%).
    HPLC: (61% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 285 nm (pH 7), ϵ = 40000 (est.).
    ESI-MS (+): m/z calculated for C27H27N5O9PS ([M + H]+): 628.13, found: 628.
    ESI-MS (−): m/z calculated for C27H25N5O9PS ([M − H]): 626.11, found: 626.
    131
    Figure US20210317156A1-20211014-C00539
    8-(4-Chlorophenyl)-β-phenyl-1,N2-ethenoguanosine-3′,5′-cyclic monophosphate
    (8-pCP-PET-cGMP)
    Using general procedure X, 8-Br-PET-cGMP was reacted with 4-chlorphenylboronic acid to
    give the title compound.
    Yield (Purity): 29% (>99%).
    HPLC: (27% MeCN, 25 mM NaH2PO4 buffer, pH 6.8).
    UV-VIS: λmax = 279 nm (pH 7), ϵ = 40000 (est.).
    ESI-MS (+): m/z calculated for C24H20ClN5O7P ([M + H]+): 556.08, found: 556.
    ESI-MS (−): m/z calculated for C24H18ClN5O7P ([M − H]): 554.06, found: 554.
    132
    Figure US20210317156A1-20211014-C00540
    8-(4-Hydroxyphenyl)-β-phenyl-1,N2-ethenoguanosine-3′,5′-cyclic
    monophosphate (8-pHP-PET-cGMP)
    Using general procedure X, 8-Br-PET-cGMP was reacted with 4-hydroxyphenylboronic acid
    to give the title compound.
    Yield (Purity): 43% (>99%).
    HPLC: (20% MeCN, 25 mM NaH2PO4 buffer, pH 6.8).
    UV-VIS: λmax = 279 nm (pH 7), ϵ = 40000 (est.).
    ESI-MS (+): m/z calculated for C24H21N5O8P ([M + H]+): 538.11, found: 538.
    ESI-MS (−): m/z calculated for C24H19N5O8P ([M − H]): 536.10, found: 536.
    133
    Figure US20210317156A1-20211014-C00541
    8-(4-Isopropylphenyl)-β-phenyl-1,N2-ethenoguanosine-3′,5′-cyclic
    monophosphate (8-pIPrP-PET-cGMP)
    Using general procedure X, 8-Br-PET-cGMP was reacted with 4-isopropylphenylboronic
    acid to give the title compound.
    Yield (Purity): 25% (>99%).
    HPLC: (31% MeCN, 30 mM NaH2PO4 buffer, pH 6.8).
    UV-VIS: λmax = 277 nm (pH 7), ϵ = 40000 (est.).
    ESI-MS (+): m/z calculated for C27H27N5O7P ([M + H]+): 564.16, found: 564.
    ESI-MS (−): m/z calculated for C27H25N5O7P ([M − H]): 562.15, found: 562.
    134
    Figure US20210317156A1-20211014-C00542
    8-Bromo-(4-methoxy-β-phenyl-1,N2-etheno)guanosine-3′,5′-cyclic
    monophosphate (8-Br-pMeO-PET-cGMP)
    Using general procedure Y, 8-Br-cGMP was reacted with 2-bromo-4′-methoxyacetophenone
    to give the title compound.
    Yield (Purity): 17% (>97%).
    HPLC: (50% MeOH, 25 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 267 nm (pH 7), ϵ = 40000 (est.).
    ESI-MS (+): m/z calculated for C19H17BrN5O8PNa ([M + Na]+): 575.99, found: 576.
    ESI-MS (−): m/z calculated for C19H16BrN5O8P ([M − H]): 551.99, found: 552.
    135
    Figure US20210317156A1-20211014-C00543
    8-Bromo-(4-methyl-β-phenyl-1,N2-etheno)guanosine-3′,5′-cyclic
    monophosphate (8-Br-pMe-PET-cGMP)
    Using general procedure Y, 8-Br-cGMP was reacted with 2-bromo-4′-methylacetophenone
    to give the title compound.
    Yield (Purity): 11% (>98%).
    HPLC: (23% i-PrOH, 50 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 262 nm (pH 7), ϵ = 40000 (est.).
    ESI-MS (+): m/z calculated for C19H17BrN5O7PNa ([M + Na]+): 559.99, found: 560.
    ESI-MS (−): m/z calculated for C19H16BrN5O7P ([M − H]): 536.00, found: 536.
    136
    Figure US20210317156A1-20211014-C00544
    alpha-Benzoyl-beta-phenyl-1,N2-etheno-8-bromoguanosine-3′,5′-cyclic
    monophosphate (Bnz-PET-8-Br-cGMP)
    Using general procedure Y, 8-Br-cGMP was reacted with 2-bromo-1,3-diphenylpropane-1,3-
    dione to give the title compound.
    Yield (Purity): 12% (>94%).
    HPLC: (45% MeOH, 25 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 255 nm (pH 7), ϵ = 40000 (est.).
    ESI-MS (+): m/z calculated for C25H19BrN5O8PNa ([M + Na]+): 650.01, found: 650.
    ESI-MS (−): m/z calculated for C25H18BrN5O8P ([M − H]): 626.01, found: 626.
    137
    Figure US20210317156A1-20211014-C00545
    8-Bromo-(4-chloro-β-phenyl-1,N2-etheno)guanosine-3′,5′-cyclic
    monophosphate (8-Br-pCl-PET-cGMP)
    Using general procedure Y, 8-Br-cGMP was reacted with 2-bromo-4′-chloroacetophenone
    to give the title compound.
    Yield (Purity): 28% (>99%).
    HPLC: (57% MeOH, 20 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 263 nm (pH 7), ϵ = 40000 (est.).
    ESI-MS (+): m/z calculated for C18H13BrClN5O7PNa2 ([M + 2Na − H]+): 601.92, found: 602.
    ESI-MS (−): m/z calculated for C18H13BrClN5O7P ([M − H]): 555.94, found: 556.
    138
    Figure US20210317156A1-20211014-C00546
    8-Bromo-(3-nitro-β-phenyl-1,N2-etheno)guanosine-3′,5′-cyclic monophosphate
    (8-Br-mN-PET-cGMP)
    Using general procedure Y, 8-Br-cGMP was reacted with 2-bromo-3′-nitroacetophenone to
    give the title compound.
    Yield (Purity): 14% (>98%).
    HPLC: (45% MeOH, 25 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 261 nm (pH 7), ϵ = 40000 (est.).
    ESI-MS (+): m/z calculated for C18H15BrN6O9P ([M + H]+): 568.98, found: 569.
    ESI-MS (−): m/z calculated for C18H13BrN6O9P ([M − H]): 566.97, found: 567.
    139
    Figure US20210317156A1-20211014-C00547
    8-Bromo-(β-tert.-butyl-1,N2-etheno)guanosine-3′,5′-cyclic monophosphate (8-
    Br-tBuET-cGMP)
    Using general procedure Y, 8-Br-cGMP was reacted with 1-bromo-3,3-dimethyl-2-butanone
    to give the title compound.
    Yield (Purity): 38% (>99%).
    HPLC: (48% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = nm (pH 7), ϵ = 40000 (est.).
    ESI-MS (+): m/z calculated for C16H20BrN5O7P ([M + H]+): 504.03, found: 504.
    ESI-MS (−): m/z calculated for C16H18BrN5O7P ([M − H]): 502.01, found: 502.
    140
    Figure US20210317156A1-20211014-C00548
    8-Bromo-(2-methoxy-β-phenyl-1,N2-etheno)guanosine-3′,5′-cyclic
    monophosphate (8-Br-oMeO-PET-cGMP)
    Using general procedure Y, 8-Br-cGMP was reacted with 2-bromo-2′-methoxyacetophenone
    to give the title compound.
    Yield (Purity): 4% (>99%).
    HPLC: (52% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 256 nm (pH 7), ϵ = 40000 (est.).
    ESI-MS (+): m/z calculated for C19H18BrN5O8P ([M + H]+): 554.01, found: 554.
    ESI-MS (−): m/z calculated for C19H16BrN5O8P ([M − H]): 551.99, found: 552.
    141
    Figure US20210317156A1-20211014-C00549
    8-Bromo-(3-methoxy-β-phenyl-1,N2-etheno)guanosine-3′,5′-cyclic
    monophosphate (8-Br-mMe-PET-cGMP)
    Using general procedure Y, 8-Br-cGMP was reacted with 2-bromo-3′-methoxyacetophenone
    to give the title compound.
    Yield (Purity): 10% (>99%).
    HPLC: (23% i-PrOH, 50 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 258 nm (pH 7), ϵ = 40000 (est.).
    ESI-MS (+): m/z calculated for C19H18BrN5O8P ([M + H]+): 554.01, found: 554.
    ESI-MS (−): m/z calculated for C19H16BrN5O8P ([M − H]): 551.99, found: 552.
    142
    Figure US20210317156A1-20211014-C00550
    8-Bromo-(2,4-dimethoxy-β-phenyl-1,N2-etheno)guanosine-3′,5′-cyclic
    monophosphate (8-Br-o,pDMeO-PET-cGMP)
    Using general procedure Y, 8-Br-cGMP was reacted with 2-bromo-2′,4′-
    dimethoxyacetophenone to give the title compound.
    Yield (Purity): 14% (>98%).
    HPLC: (18% MeCN, 50 mM NaH2PO4 buffer, pH 6.7).
    UV-VIS: λmax = 267 nm (pH 7), ϵ = 40000 (est.).
    ESI-MS (+): m/z calculated for C20H20BrN5O9P ([M + H]+): 584.02, found: 584.
    ESI-MS (−): m/z calculated for C20H18BrN5O9P ([M − H]): 582.00, found: 582.
    143
    Figure US20210317156A1-20211014-C00551
    8-Bromo-(4-pyridinyl-1,N2-etheno)guanosine-3′,5′-cyclic monophosphate (8-Br-
    (4-Pyr)ET-cGMP)
    Using general procedure Y, 8-Br-cGMP was reacted with 2-bromo-1-(4-pyridinyl)-1-
    ethanone hydrochloride to give the title compound.
    Yield (Purity): 31% (>98%).
    HPLC: (15% MeCN, 50 mM NaH2PO4 buffer, pH 6.7).
    UV-VIS: λmax = 266 nm (pH 7), ϵ = 40000 (est.).
    ESI-MS (+): m/z calculated for C17H15BrN6O7P ([M + H]+): 524.99, found: 525.
    ESI-MS (−): m/z calculated for C17H13BrN6O7P ([M − H]): 522.98, found: 523.
    144
    Figure US20210317156A1-20211014-C00552
    8-Bromo-(3-thiophen-yl-1,N2-etheno)guanosine-3′,5′-cyclic monophosphate (8-
    Br-(3-Tp)ET-cGMP)
    Using general procedure Y, 8-Br-cGMP was reacted with 3-(bromoacetyl)-thiophene to give
    the title compound.
    Yield (Purity): 52% (>99%).
    HPLC: (15% MeCN, 50 mM NaH2PO4 buffer, pH 6.7).
    UV-VIS: λmax = 261 nm (pH 7), ϵ = 40000 (est.).
    ESI-MS (+): m/z calculated for C16H14BrN5O7PS ([M + H]+): 529.95, found: 530.
    ESI-MS (−): m/z calculated for C16H12BrN5O7PS ([M − H]): 527.94, found: 528.
    145
    Figure US20210317156A1-20211014-C00553
    8-Bromo-(4-fluoro-β-phenyl-1,N2-etheno)guanosine-3′,5′-cyclic
    monophosphate (8-Br-pF-PET-cGMP)
    Using general procedure Y, 8-Br-cGMP was reacted with 4-fluorophenacyl bromide to give
    the title compound.
    Yield (Purity): 25% (>99%).
    HPLC: (15% MeCN, 50 mM NaH2PO4 buffer, pH 6.7).
    UV-VIS: λmax = 257 nm (pH 7), ϵ = 40000 (est.).
    ESI-MS (+): m/z calculated for C18H15BrFN5O7P ([M + H]+): 541.99, found: 542.
    ESI-MS (−): m/z calculated for C18H13BrFN5O7P ([M − H]): 539.97, found: 540.
    146
    Figure US20210317156A1-20211014-C00554
    8-Bromo-1,N2-ethenoguanosine-3′,5′-cyclic monophosphate (8-Br-ET-cGMP)
    Using general procedure Y, 8-Br-cGMP was reacted with chloroacetaldehyde to give the
    title compound.
    Yield (Purity): 10% (>99%).
    HPLC: (9% MeCN, 20 mM TEAF buffer, pH 6.9).
    UV-VIS: λmax = 287 nm (pH 7), ϵ = 14600 (est.).
    ESI-MS (+): m/z calculated for C12H12BrN5O7P ([M + H]+): 447.97, found: 448.
    ESI-MS (−): m/z calculated for C12H10BrN5O7P ([M − H]): 445.95, found: 446.
    147
    Figure US20210317156A1-20211014-C00555
    8-Bromo-(3-hydroxy-β-phenyl-1,N2-etheno)guanosine-3′,5′-cyclic
    monophosphate (8-Br-mH-PET-cGMP)
    Using general procedure Y, 8-Br-cGMP was reacted with 3′-benzoyloxy-2-
    bromoacetophenone to give the O-benzoyl protected analogue of the title compound. Prior
    to chromatographic workup the crude product was subjected to NaOH (2M, 10 eq), to effect
    cleavage of the protecting group, and neutralized with HCl (1M).
    Yield (Purity): 13% (>99%).
    HPLC: (43% MeOH, 10 mM TEAF buffer, pH 6.8), second chromatographic workup
    (20% MeCN, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 258 nm (pH 7), ϵ= 40000 (est.).
    ESI-MS (+): m/z calculated for C18H16BrN5O8P ([M + H]+): 539.99, found: 540.
    ESI-MS (−): m/z calculated for C18H14BrN5O8P ([M − H]): 537.98, found: 538.
    148
    Figure US20210317156A1-20211014-C00556
    8-Bromo-(4-hydroxy-β-phenyl-1,N2-etheno)guanosine-3′,5′-cyclic
    monophosphate (8-Br-pHPET-cGMP)
    Using general Y, 8-Br-cGMP was reacted with 4-(bromoacetyl)-phenyl benzoate
    to give the O-benzoyl protected analogue of the title compound. Prior to chromatographic
    workup the crude product was subjected to NaOH (2M, 10 eq), to effect cleavage of the
    protecting group, and neutralized with HCl (1M).
    Yield (Purity): 12% (>99%).
    HPLC: (43% MeOH, 10 mM TEAF buffer, pH 6.8), second chromatographic
    workup (20% MeCN, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 267 nm (pH 7), ϵ = 40000 (est.).
    ESI-MS (+): m/z calculated for C18H16BrN5O8P ([M + H]+): 539.99, found: 540.
    ESI-MS (−): m/z calculated for C18H14BrN5O8P ([M − H]): 537.98, found: 538.
    149
    Figure US20210317156A1-20211014-C00557
    8-Bromo-(β-(2,3-dihydro-1,4-benzodioxin)-1,N2-etheno)guanosine-3′,5′-cyclic
    monophosphate (8-Br-(2,3-DHy-1,4-BnzDiox)-ET-cGMP)
    Using general procedure Y, 8-Br-cGMP was reacted with 2-bromo-1-(2,3-dihydro-1,4-
    benzodioxin-6-yl)ethanone to give the title compound.
    Yield (Purity): 8% (>99%).
    HPLC: (52% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 267 nm (pH 7), ϵ = 40000 (est.).
    ESI-MS (+): m/z calculated for C20H18BrN5O9P ([M + H]+): 582.00, found: 582.
    ESI-MS (−): m/z calculated for C20H16BrN5O9P ([M − H]): 579.99, found: 580.
    150
    Figure US20210317156A1-20211014-C00558
    8-Bromo-(4-methylsulfonamido-β-phenyl-1,N2-etheno)guanosine-3′,5′-cyclic
    monophosphate (8-Br-pMSulfAmd-PET-cGMP)
    Using general procedure Y, 8-Br-cGMP was reacted with N-[4-(2-bromoacetyl)phenyl]-
    methanesulfonamide to give the title compound.
    Yield (Purity): 25% (>97%).
    HPLC: (45% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 270 nm (pH 7), ϵ = 40000 (est.).
    ESI-MS (+): m/z calculated for C19H19BrN6O9PS ([M + H]+): 616.99, found: 617.
    ESI-MS (+): m/z calculated for C19H17BrN6O9PS ([M − H]): 614.97, found: 615.
    151
    Figure US20210317156A1-20211014-C00559
    8-Bromo-(4-cyano-β-phenyl-1,N2-etheno)guanosine-3′,5′-cyclic monophosphate
    (8-Br-pCN-PET-cGMP)
    Using general procedure Y, 8-Br-cGMP was reacted with 2-bromo-4′-cyanoacetophenone to
    give the title compound.
    Yield (Purity): 12% (>99%).
    HPLC: (45% MeOH, 10 mM TEAF buffer, pH 6.8), second chromatographic workup
    (22% MeCN, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 272 nm (pH 7), ϵ = 40000 (est.).
    ESI-MS (+): m/z calculated for C19H15BrN6O7P ([M + H]+): 548.99, found: 549.
    ESI-MS (−): m/z calculated for C19H13BrN6O7P ([M − H]): 546.98, found: 547.
    152
    Figure US20210317156A1-20211014-C00560
    8-Bromo-(α-phenyl-β-methyl-1,N2-etheno)guanosine-3′,5′-cyclic
    monophosphate (8-Br-alpha-Phe-beta-Me-ET-cGMP)
    Using general procedure Y, 8-Br-cGMP was reacted with 1-bromo-1-phenylpropan-2-one to
    give the title compound.
    Yield (Purity): 9% (>99%).
    HPLC: (45% MeOH, 10 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 294 nm (pH 7), ϵ = 40000 (est.).
    ESI-MS (+): m/z calculated for C19H18BrN5O7P ([M + H]+): 538.01, found: 538.
    ESI-MS (−): m/z calculated for C19H16BrN5O7P ([M − H]): 536.00, found: 536.
    153
    Figure US20210317156A1-20211014-C00561
    β-(4-Aminophenyl)-1,N2-etheno-8-bromoguanosine-3′,5′-cyclic monophosphate
    (pNH2-PET-8-Br-cGMP)
    The title compound was synthesized from 4-N3-PET-8-Br-cGMP using general procedure V.
    Yield (Purity): 10% (>98%).
    HPLC: (18% MeCN, 50 mM NaH2PO4 buffer, pH 6.7).
    UV-VIS: λmax = 274 nm (pH 7), ϵ = 40000 (est.).
    ESI-MS (+): m/z calculated for C18H17BrN6O7P ([M + H]+): 539.01, found: 539.
    ESI-MS (−): m/z calculated for C18H17BrN6O7P ([M − H]): 536.99, found: 537.
    154
    Figure US20210317156A1-20211014-C00562
    8-Bromo-(6-methoxy-2-naphthyl-1,N2-etheno)guanosine-3′,5′-cyclic
    monophosphate (8-Br-(6-MeO-2-N)ET-cGMP)
    Using general procedure Y, 8-Br-cGMP was reacted with 2-bromo-6′-methoxy-2′-
    acethonaphtone to give the title compound.
    Yield (Purity): 6% (>99%).
    HPLC: (27% MeCN, 10 mM NaH2PO4 buffer, pH 7.3).
    UV-VIS: λmax = 260 nm (pH 7), ϵ = 40000 (est.).
    ESI-MS (+): m/z calculated for C23H20BrN5O8P ([M + H]+): 604.02, found: 604.
    ESI-MS (−): m/z calculated for C1H1N5O9PS ([M − H]): 602.01, found: 602.
    155
    Figure US20210317156A1-20211014-C00563
    8-Bromo-(9-phenanthrenyl-1,N2-etheno)guanosine-3′,5′-cyclic monophosphate
    (8-Br-(9-Phethr)ET-cGMP)
    Using general procedure Y, 8-Br-cGMP was reacted with 9-(2-bromoacetyl)phenantrene to
    give the title compound.
    Yield (Purity): 10% (>99%).
    HPLC: (28% MeCN, 50 mM NaH2PO4 buffer, pH 6.7).
    HPLC (analytical): (26% MeCN, 50 mM NaH2PO4 buffer, pH 7.2)
    UV-VIS: λmax = 254 nm (pH 7), ϵ = 40000 (est.).
    ESI-MS (+): m/z calculated for C26H20BrN5O7P ([M + H]+): 624.03, found: 624.
    ESI-MS (−): m/z calculated for C26H18BrN5O7P ([M − H]): 622.01, found: 622.
    156
    Figure US20210317156A1-20211014-C00564
    8-Bromo-(4-trifluoromethyl-β-phenyl-1,N2-etheno)guanosine-3′,5′-cyclic
    monophosphate (8-Br-pTFMe-PET-cGMP)
    Using general procedure Y, 8-Br-cGMP was reacted with 2-bromo-4′-(trifluoromethyl)-
    acetophenon to give the title compound.
    Yield (Purity): 18% (>99%).
    HPLC: (27% MeCN, 50 mM NaH2PO4 buffer, pH 6.7).
    UV-VIS: λmax = 258 nm (pH 7), ϵ = 40000 (est.).
    ESI-MS (+): m/z calculated for C19H15BrF3N5O7P ([M + H]+): 591.98, found: 592.
    ESI-MS (−): m/z calculated for C19H13BrF3N5O7P ([M − H]): 589.97, found: 590.
    157
    Figure US20210317156A1-20211014-C00565
    (4-Fluoro-β-phenyl-1,N2-etheno)-8-methylthioguanosine-3′,5′-cyclic
    monophosphate (pF-PET-8-MeS-cGMP)
    Using general procedure A, 8-Br-pF-PET-cGMP (1 eq) was reacted with sodium
    methanethiolate (4 eq) to give the title compound.
    Yield (Purity): 30% (>99%).
    HPLC: (18% MeCN, 50 mM NaH2PO4 buffer, pH 6.7).
    UV-VIS: λmax = 270 nm (pH 7), ϵ = 40000 (est.).
    ESI-MS (+): m/z calculated for C19H18FN5O7PS ([M + H]+): 510.06, found: 510.
    ESI-MS (−): m/z calculated for C19H16FN5O7PS ([M − H]): 508.05, found: 508.
    158
    Figure US20210317156A1-20211014-C00566
    (4-Methoxy-β-phenyl-1,N2-etheno)-8-methylthioguanosine-3′,5′-cyclic
    monophosphate (pMeO-PET-MeS-cGMP)
    Using general procedure A 8-Br-pMeO-PET-cGMP (1 eq) was reacted with sodium
    methanethiolate (4 eq) to give the title compound.
    Yield (Purity): 88% (>99%).
    HPLC: (18% MeCN, 50 mM NaH2PO4 buffer, pH 6.7).
    UV-VIS: λmax = 275 nm (pH 7), ϵ = 40000 (est.).
    ESI-MS (+): m/z calculated for C20H21N5O8PS ([M + H]+): 522.08, found: 522.
    ESI-MS (−): m/z calculated for C20H19N5O8PS ([M − H]): 520.07, found: 520.
    159
    Figure US20210317156A1-20211014-C00567
    1,N2-Etheno-8-(2-phenylethyl)thioguanosine-3′,5′-cyclic monophosphate (ET-8-
    PhEtT-cGMP)
    Using general procedure A, 8-Br-Et-cGMP (B 177) was reacted with 2-phenyethanethiol to
    give the title compound.
    Yield (Purity): 18% (>99%).
    HPLC: (18% MeCN, 50 mM NaH2PO4 buffer, pH 6.7).
    UV-VIS: λmax = 288 nm (pH 7), ϵ = 19900 (est.).
    ESI-MS (+): m/z calculated for C20H21N5O7PS ([M + H]+): 506.09, found: 506.
    ESI-MS (−): m/z calculated for C20H19N5O7PS ([M − H]): 504.07, found: 504.
    160
    Figure US20210317156A1-20211014-C00568
    (4-Methoxy-β-phenyl-1,N2-etheno)-8-propylthioguanosine-3′,5′-cyclic
    monophosphate (pMeO-PET-8-PrT-cGMP)
    Using general procedure A, 8-Br-pMeO-PET-cGMP (1 eq) was reacted with
    1-Propanethiol (40 eq) to give the title compound.
    Yield (Purity): 40% (>99%).
    HPLC: (22% MeCN, 50 mM NaH2PO4 buffer, pH 6.7).
    UV-VIS: λmax = 276 nm (pH 7), ϵ = 40000 (est.).
    ESI-MS (+): m/z calculated for C22H24N5O8PS ([M + H]+): 550.12, found: 550.
    ESI-MS (−): m/z calculated for C22H24N5O8PS ([M − H]): 548.10, found: 548.
    161
    Figure US20210317156A1-20211014-C00569
    β-1,N2-Acetyl-8-bromoguanosine-3′,5′-cyclic monophosphate (β-1,N2-Ac-8-Br-
    cGMP)
    Using general procedure Y2, 8-Br-cGMP was reacted with methyl bromoacetate to give the
    title compound.
    Yield (Purity): 34% (>99%).
    HPLC: (7% MeCN, 30 mM TEAF buffer, pH 6.7).
    UV-VIS: λmax = 266 nm (pH 7), ϵ = 15000 (est.).
    ESI-MS (+): m/z calculated for C12H12N5O8PBr ([M + H]+): 463.96, found: 464.
    ESI-MS (−): m/z calculated for C12H10N5O8PBr ([M − H]): 461.95, found: 462.
    162
    Figure US20210317156A1-20211014-C00570
    8-Bromo-β-1,N2-butyrylguanosine-3′,5′-cyclic monophosphate (8-Br-δ-1,N2-But-
    cGMP)
    Using general procedure Y3, 8-Br-1-CPr-cGMP was transformed into the title compound.
    Yield (Purity): 50% (>99%).
    HPLC: (26% MeOH, 50 mM TEAF buffer, pH 6.7).
    UV-VIS: λmax = 265 nm (pH 7), ϵ = 16200 (est.).
    ESI-MS (+): m/z calculated for C14H16N5O8PBr ([M + H]+): 491.99, found: 492.
    ESI-MS (−): m/z calculated for C14H14N5O8PBr ([M − H]): 489.98, found: 490.
    163
    Figure US20210317156A1-20211014-C00571
    8-Bromo-1-(3-carboxypropyl)guanosine-3′,5′-cyclic monophosphate (8-Br-1-CPr-
    cGMP)
    Using general procedure Z, 8-Br-cGMP was reacted with ethyl 4-bromobutyrate to give the
    corresponding ethylester of the title compound. The crude product was transformed into the
    titel compound without prior chromatographic workup using general procedure F.
    Yield (Purity): 62%, 2 steps (>99%).
    HPLC: (22% MeOH, 200 mM TEAF buffer, pH 6.7).
    UV-VIS: λmax = 266 nm (pH 7), ϵ = 16200 (est.).
    ESI-MS (+): m/z calculated for C14H18N5O9PBr ([M + H]+): 510.00, found: 510.
    ESI-MS (−): m/z calculated for C14H16N5O9PBr ([M − H]): 507.99, found: 508.
    164
    Figure US20210317156A1-20211014-C00572
    1-[Aminomethyl-(pentaethoxy)-propylamidopropyl]-8-bromoguanosine-3′,5′-
    cyclic monophosphate (1-AM-(EO)5-PrAmdPr-8-Br-cGMP)
    Using adapted general procedure L, 8-Br-1-CPr-cGMP was reacted with NH2CH2-PEG5-
    (CH2)3-NH2 (3 eq) to receive the title compound.
    Yield (Purity): 53% (>99%).
    HPLC: (36% MeOH, 100 mM TEAF buffer, pH 6.8).
    UV-VIS: λmax = 267 nm (pH 7), ϵ = 16200 (est.).
    ESI-MS (+): m/z calculated for C28H48N7O13PBr ([M + H]+): 800.22, found: 800.
    ESI-MS (+): m/z calculated for C28H46N7O13PBr ([M − H]): 798.20, found: 798.
    165
    Figure US20210317156A1-20211014-C00573
    1-Benzyl-8-bromoguanosine-3′,5′-cyclic monophosphate
    (1-Bn-8-Br-cGMP)
    Using general procedure Z, 8-Br-cGMP was reacted with benzyl bromide to give the title
    compound.
    Yield (Purity): 70% (>99%).
    HPLC: (16% MeCN, 100 mM NaH2PO4 buffer, pH 6.7).
    UV-VIS: λmax 265 nm (pH 7), ϵ = 16200 (est.).
    ESI-MS (+): m/z calculated for C17H18N5O7PBr ([M + H]+): 514.01, found: 514.
    ESI-MS (−): m/z calculated for C17H16N5O7PBr ([M − H]): 512.00, found: 512.
    166
    Figure US20210317156A1-20211014-C00574
    2′-O-(2-Azidoacetyl)-8-bromo-β-phenyl-1,N2-ethenoguanosine-3′,5′-cyclic
    monophosphate (2′-O-(2-N3Ac)-8-Br-PET-cGMP)
    Using general procedure ZZ, 8-Br-PET-cGMP was transformed into the title compound.
    Yield (Purity): 60% (>99%).
    HPLC: (22% MeCN, 50 mM NaH2PO4 buffer, pH 6.8).
    UV-VIS: λmax = 258 nm (pH 7), ϵ = 40000 (est.).
    ESI-MS (+): m/z calculated for C20H17N8O8PBr ([M + H]+): 607.01, found: 607.
    ESI-MS (−): m/z calculated for C20H15N8O8PBr ([M − H]): 604.99, found: 605.
  • 2. Activation of PKG Isoforms by cGMP Derivatives
  • Experimental Part
  • In vitro activation experiments with PKG isozymes Iα, Iß and II were performed with the commercially available luminescence assay ADP-Glo™ Kinase Assay (Cat. #V9101) from Promega Corporation (Madison, Wis., USA) according to the manufacturer's instruction manual (The ADP-Glo™ Kinase Assay Technical Manual #TM313), standardized and conducted by BIAFFIN GmbH & Co KG (Kassel, Germany). Luminescence detection was accomplished with a LUMlstar Optima microplate luminometer from BMG LABTECH GmbH (Ortenberg, Germany). Bovine PKG type Iα was purified from bovine lung. Human PKGIß and PKGII were expressed in Sf9 cells and purified by affinity chromatography.2 Concentrations of enzymes given below refer to the dimeric form. VASPtide (GL Biochem Ltd., Shanghai, China) was used as PKG-selective phosphorylation substrate peptide.2
  • Assay Conditions:
  • PKG Iα (0.2 nM), 20 mM Tris (pH 7.4), 10 mM Mg2Cl2, 1 mg/mL BSA, 0.15 mM β-mercaptoethanol, 2.5% DMSO, 130 μM VASPtide, 50 μM ATP, room temperature, 60 min.
  • PKG Iß (0.15 nM), 20 mM Tris (pH 7.4), 10 mM Mg2Cl2, 1 mg/mL BSA, 2.5% DMSO, 130 μM VASPtide, 50 μM ATP, room temperature, 60 min.
  • PKG II (0.5 nM), 20 mM Tris (pH 7.4), 10 mM Mg2Cl2, 1 mg/mL BSA, 5 mM β-mercaptoethanol, 2.5% DMSO, 130 μM VASPtide, 50 μM ATP, room temperature, 120 min.
  • Different concentrations (10 μM to 6 μM) of the compounds of the invention and cGMP as reference compound were incubated with the respective PKG isozyme. To increase assay sensitivity in case of PKG II, cGMP and compounds of the invention were preincubated at room temperature for 30 min. The activation values of the compounds are expressed as relative PKG activation compared to cGMP with cGMP set as 1 for each kinase isozyme. The Ka-values of cGMP for half-maximal kinase activation were 28 nM for Iα, 425 nM for Iß and 208 nM for II.
  • Results
  • FIGS. 3 to 5 show that all tested PLMs produce significantly higher relative PKG activation for at least 2 of the 3 PKG isozymes compared to the reference compound cGMP. Furthermore, it has to be noted, that the applied standard assay conditions only allowed to determine increased activation potencies of up to 140-fold for PKG Iα, 2832-fold for PKG Iß and 416-fold for PKG II, which is due to the employed enzyme concentration in the assays and the phenomenon that the isozymes were activity-titrated in some cases by the highly active compounds of the invention. The actual PKG activation potentials of these particular compounds of the invention appear to be significantly higher and are therefore expressed as ≥140-fold for PKG Iα, ≥2832-fold for PKG Iß and ≥416-fold for PKG II. A careful and more detailed analysis of the results is provided in the detailed description of the invention-section.
  • 3. 661W Cell Line: Assessment of Cell Death Using the Ethidium Homodimer Assay
  • Background
  • To test the effect of PKG activators, the 661W cell line was used and increase in cell death after treatment was assessed. The 661W cell line is a photoreceptor precursor cell line, immortalized with the SV40 T antigen. As shown in the FIG. 6, the 661W cells express PKG. This makes them a suitable model for examining PKG activity using cell death as readout since increased PKG activity was previously associated with increased cell deaths. Because of potentially complex outcomes from the activation of different PKG isoforms this analysis is interpreted as a proof of principle on the use of these compounds in PKG-expressing cells or tissues.
  • Experimental Part
  • The 661W cells were cultured in DMEM with 10% FBS (Fetal Bovine Serum), 2 mM Glutamine, 100 U/ml penicillin, and 100 μg/ml streptomycin. For the Ethidium Homodimer Assay, cells were plated in a 24 well plate on slides coated with ECM (extracellular matrix) at 20 000 cells/well and left for 24 hours to attach to the slides. The next day the cells were treated with the compounds. Compounds were dissolved in water and then diluted in the medium at concentrations of 1 nM to 10 μM. 16 hours after treatment cells were washed with PBS and fixed in 4% paraformaldehyde. Afterwards slides were dipped into 2 μM Ethidium Homodimer for 2 minutes and nuclei were stained with DAPI (4′,6-diamidino-2-phenylindole). Ethidium Homodimer stains nuclei of dying cells. To assess cell death, microphotographs were taken from three different slides for each compound concentration and the total number of cells, as well as the number of dying Ethidium Homodimer positive cells, were counted in each picture. The value for untreated cells was set to 1. To statistically assess significant differences between untreated and treated cells, the unpaired Student's t-test was used and a P value ≤0.05 was considered significant (*≤0.05, **≤0.01, ***≤0.001).
  • Results
  • FIG. 7 shows percentage of cells undergoing cell death after treatment with non limiting exemplary polymer linked dimeric cGMP analogues of the invention (12 compounds). Six of the tested compounds led to significantly increased cell death at one or more concentrations when compared to untreated cells. The most potent compounds of the invention display a 5-6 fold increase in cell death when compared to untreated cells and 3-4 fold increase in cell death when compared to the reference 8-Br-PET-cGMP.
  • Acronyms
    spectrometry
    est. estimated
    BAP bio-activatable protecting Et3NH+ triethylammonium
    group FGF fibroblast growth factor
    cAMP adenosine-3′,5′-cyclic HCN hyperpolarization-
    monophosphate activated
    cyclic nucleotide-gated
    cGMP guanosine-3′,5′-cyclic HEPES 4-(2-hydroxyethyl)-1-
    monophosphate piperazineethanesulfonic
    cGMPS guanosine-3′,5′-cyclic acid
    monophosphorothioate HOBt 1-hydroxybenzotriazole
    CNGC cyclic nucleotide gated HPLC high performance liquid
    ion channel chromatography
    Cy cyclohexyl (i-Pr)2EtNH+ diisopropylethy-
    lammonium
    Cyp cyclopentyl i-PrOH 2-propanol
    Da Dalton m/z mass-to-charge ratio
    DAPI 4′,6-diamidino-2- MeCN acetonitrile
    phenylindole MTBE tert-butyl methyl ether
    DBU 1,8- Mw molecular weight
    diazabicyclo[5.4.0] N2 N2-supplement for cell
    undec-7-ene culture
    DMEM/ Dulbecco's modifiziertes NHS N-hydroxysuccinimid
    F12 eagle medium in PAP photo-activatable
    protecting
    combination with Ham′s group
    F-12 medium PBS phosphate buffered
    saline
    DMF N,N-dimethylformamide Pd(dppf)Cl2 1,1′-
    DMSO dimethyl sulfoxide bis(diphenylphosphino)
    ferro
    dppf 1,1′- cene-palladium(I1)
    dichloride
    Bis(diphenylphosphino) PDE phosphodiesterase
    ferro cene PEG poly(ethylene glycol)
    ECM extracellular matrix PET ß- Phenyl- 1, N2- etheno
    EDC 1-ethyl-3-(3- PFA paraformaldehyde
    dimethylaminopropyl) PKG cGMP-dependent
    carbod iimide protein kinase
    EGTA ethylene glycol-bis(2- PLD polymer linked dimer
    aminoethylether)- PLM polymer linked
    N,N,N′N′- tetraacetic multimer
    acid PN postnatal
    ESI-MS electrospray Ionization PyBOP benzotriazole-1-yl-
    mass oxytripyrrolid-
    inophosphonium
    hexafluorophosphate
    Rp as in Rp-cGMPS refers VS vinylsulfone
    to configuration of the
    chiral phosphorus, ε extinction coefficient
    wherein R/S λmax wavelength at which
    follows the Cahn-Ingold- absorbance is highest
    Prelog rules while
    “p” stands
    for phosphorus.
    RP-18 reversed phase octadecyl
    modified material
    SD standard deviation
    TEA triethylammonium
    TEAF triethylammonium formate
    UV-VIS ultraviolet and visible (spectroscopy)
  • LITERATURE
    • 1. (a) Schwede, F.; Maronde, E.; Genieser, H.; Jastorff, B., Cyclic nucleotide analogs as biochemical tools and prospective drugs. Pharmacol Ther 2000, 87 (2-3), 199-226; (b) Schmidt, H. H.; Hofmann, F.; Stasch, J., In cGMP: Generators, Effectors and Therapeuti Implications, Springer-Verlag Heidelberg: Berlin, 2009; pp 447-506; (c) Schlossmann, J.; Schinner, E., cGMP becomes a drug target. Naunyn Schmiedebergs Arch Pharmacol 2012, 385 (3), 243-52.
    • 2. Poppe, H.; Rybalkin, S. D.; Rehmann, H.; Hinds, T. R.; Tang, X. B.; Christensen, A. E.; Schwede, F.; Genieser, H.; Bos, J. L.; Doskeland, S. O.; Beavo, J. A.; Butt, E., Cyclic nucleotide analogs as probes of signaling pathways. Nat. Methods 2008, 5, pp 277-278.
    • 3. Schmidt, H. H.; Hofmann, F.; Stasch, J., In cGMP: Generators, Effectors and Therapeutic Implications, Springer-Verlag Heidelberg: Berlin, 2009; pp 409-421.
    • 4. Herfindal, L.; Krakstad, C.; Myhren, L.; Hagland, H.; Kopperud, R.; Teigen, K.; Schwede, F.; Kleppe, R.; Doskland, S. O., Introduction of Aromatic Ring-Containing Substituents in Cyclic Nucleotides Is Associated with Inhibition of Toxin Uptake by the Hepatocyte Transporters OATP 1B1 and 1B3. PLoS ONE 2014, 9 (4), e94926.
    • 5. Kramer, R. H.; Karpen, J. W., Spanning binding sites on allosteric proteins with polymer-linked ligand dimers. Nature 1998, 395, 710-713.
    • 6. Sekhar, K. R.; Hatchett, R. J.; Shabb, J. B.; Wolfe, L.; Francis, S. H.; Wells, J. N.; Jastorff, B.; Butt, E.; Chakinala, M. M.; Corbin, J. D., Relaxation of Pig Arteries by New and Potent cGMP Analogs that Selectively Activate Type Iα, Compared with Iß, cGMP-Dependent Protein Kinase. Mol. Pharmacol 1992, pp 103-108.
    • 7. Strassmaier, T.; Karpen, J., Novel N7- and N1-substituted cGMP Derivatives Are Potent Activators of Cyclic Nucleotide-Gated Channels. J. Med. Chem. 2007, 50, 4186-4194.
    • 8. Kramer, R. H.; Karpen, J. W. Multimeric Tethered Ligands and Their Use in Receptor-Ligand Interaction. WO 99/25384, 1999.
    • 9. Paquet-Durand, F.; Hauck, S. M.; van Veen, T.; Ueffing, M.; Ekstrom, P., PKG activity causes photoreceptor cell death in two retinitis pigmentosa models. J Neurochem 2009, 108 (3), 796-810.
    • 10. (a) Wang, Y.; Chen, Y.; Wu, M.; Lan, T.; Wu, Y.; Li, Y.; Qian, H., Type II cyclic guanosine monophosphate-dependent protein kinase inhibits Rad activation in gastric cancer cells. Oncol Left 2015, 10 (1), 502-508; (b) Zhu, M.; Yao, X.; Wu, M.; Qian, H.; Wu, Y.; Chen, Y., Type II cGMP-dependent protein kinase directly inhibits HER2 activation of gastric cancer cells. Mol Med Rep 2016, 13 (2), 1909-13.
    • 11. (a) Bala, I.; Hariharan, S.; Kumar, M. N., PLGA nanoparticles in drug delivery: the state of the art. Crit Rev Ther Drug Carrier Syst 2004, 21 (5), 387-422; (b) Basu, S. C.; Basu, M., Liposome Methods and Protocols. Humana Press: 2002; (c) Gregoriadis, G., Liposome Technology. Informa Healthcare: 2006; (d) Paquet-Durand, F.; Gaillard, P. J.; Maringo, V.; Ekström, P.; Genieser, H.-G.; Rentsch, A. Targeted liposomal delivery of cGMP analogues.
    • 12. Genieser, H.-G.; Walter, U.; Butt, E. Derivatives of cyclic guanosine-3′,5′-monophosphorothioate. U.S. Pat. No. 5,625,056, Apr. 29, 1997.
    • 13. Freudenberg, K.; Eichel, H.; Leutert, F., Synthesen von Abkömmlingen der Amino-säuren. Berichte der deutschen chemischen Gesellschaft (A and B Series) 1932, 65 (7), 1183-1191.
    • 14. Genieser, H.-G., New boranophosphate Analogues of cyclic nucleotides. WO/2012/130829, 2012.

Claims (14)

1. A compound having the formula (I) or (II)
Figure US20210317156A1-20211014-C00575
wherein:
G units G1 and G2 independently are compounds of formula (III) and G units G3 and G4 independently from G1 and G2 and independently from each other are compounds of formula (III) or absent, wherein in case of formula (II) G4 is always absent if G3 is absent
Figure US20210317156A1-20211014-C00576
and wherein in formula (III)
X, Y and Z are N
R1, R4, R5, R7 and R5 can be equal or individual for each G unit (G1, G2, G3 and G4),
while
R1 can independently be H, halogen, azido, cyano, acyl, aracyl, nitro, alkyl, aryl, aralkyl, OH, O-alkyl, O-aryl, O-aralkyl, O-acyl, O-aracyl, SH, S-alkyl, S-aryl, S-aralkyl, S-acyl, S-aracyl, S(O)-alkyl, S(O)-aryl, S(O)-aralkyl, S(O)-acyl, S(O)-aracyl, S(O)2-alkyl, S(O)2-aryl, S(O)2-aralkyl, S(O)2-acyl, S(O)2-aracyl, SeH, Se-alkyl, Se-aryl, Se-aralkyl, NR9R10, SiR13R14R15 wherein R9, R10, R13, R14, R15 independently from each other can be H, alkyl, aryl, aralkyl;
R2 is absent;
R3 is OH;
R4 can independently be absent, H, amino, alkyl, aralkyl, nitro, N-oxide, or can form together with R3, Y and the carbon bridging Y and R3 an imidazole ring which can be unsubstituted or substituted with alkyl, aryl or aralkyl, or can form together with Y and R5 and the carbon bridging Y and R5 an imidazole ring which can be unsubstituted or substituted with alkyl, aryl or aralkyl, or can form together with Y and R5 and the carbon bridging Y and R5 an imidazolinone as depicted (structure IV, V, n=1) or an homologous ring (n=2 to 8) which each can be unsubstituted or substituted (not depicted) with alkyl, aryl or aralkyl;
Figure US20210317156A1-20211014-C00577
R5 can independently be H, halogen, NR30R31, NH-carbamoylR32R33, wherein R30, R31, R32, R33, independently from each other can be H, alkyl, aryl, aralkyl, or can form together with R4, Y and the carbon bridging Y and R5 an imidazole ring which can be unsubstituted or substituted with alkyl, aryl or aralkyl, or can form together with R4, Y and the carbon bridging Y and R5 an imidazolinone ring as depicted (structure IV, V, n=
1) or an homologous ring (n=2 to 8) which each can be unsubstituted or substituted (not depicted) with alkyl, aryl or aralkyl;
R6 is OH;
R7 is O-carbamoyl-alkyl, O-carbamoyl-aryl, O-carbamoyl-aralkyl, OH, O-alkyl, O-aryl, O-aralkyl, O-acyl, SH, S-alkyl, S-aryl, S-aralkyl, borano (BH3), methylborano, dimethylborano, cyanoborano (BH2CN)S-PAP, O-PAP, S-BAP, or O-BAP,
wherein PAP is a photo-activatable protecting group, optionally PAP=o-nitrobenzyl, 1-(o-nitrophenyl)-ethylidene, 4,5-dimethoxy-2-nitro-benzyl, 7-dimethylamino-coumarin-4-yl (DMACM-caged), 7-diethylamino-coumarin-4-yl (DEACM-caged) and 6,7-bis(carboxymethoxy)coumarin-4-yl)methyl (BCMCM-caged),
and wherein BAP is a bio-activatable protecting group, optionally BAP=methyl, acetoxymethyl, pivaloyloxymethyl, methoxymethyl, propionyloxymethyl, butyryloxymethyl, cyanoethyl, phenyl, benzyl, 4-acetoxybenzyl, 4-pivaloyloxybenzyl, 4-isobutyryloxybenzyl, 4-octanoyloxybenzyl, 4-benzoyloxybenzyl;
and
R5 is O-carbamoyl-alkyl, O-carbamoyl-aryl, O-carbamoyl-aralkyl, OH, O-alkyl, O-aryl, O-aralkyl, O-acyl, O-PAP or O-BAP,
wherein PAP is a photo-activatable protecting group with non limiting examples of, optionally, PAP=o-nitro-benzyl, 1-(o-nitrophenyl)-ethylidene, 4,5-dimethoxy-2-nitro-benzyl, 7-dimethylamino-coumarin-4-yl (DMACM-caged), 7-diethylamino-coumarin-4-yl (DEACM-caged) and 6,7-bis(carboxymethoxy)coumarin-4-yl)methyl (BCMCM-caged);
and wherein BAP is a bio-activatable protecting group with non limiting examples of, optionally, BAP=methyl, acetoxymethyl, pivaloyloxymethyl, methoxymethyl, propionyloxymethyl, butyryloxymethyl, cyanoethyl, phenyl, benzyl, 4-acetoxybenzyl, 4-pivaloyloxybenzyl, 4-isobutyryloxybenzyl, 4-octanoyloxybenzyl, 4-benzoyloxybenzyl;
and wherein
linking residues LR1, LR2, LR3 and LR4 independently can replace or covalently bind to any of the particular residues R1, R4 and/or R5 of the G units (G1-4) they connect,
wherein in case the particular linking residue (LR1-4) covalently binds to any of the residues R1, R4 and/or R5, an endstanding group of the particular residue (R1, R4 and/or R5), as defined above, is transformed or replaced within the assembled compound and is then further defined as part of the particular linking residue (LR1-4) within the assembled compound,
while
LR1 is (a) a tri- or tetravalent branched hydrocarbon moiety or (b) a divalent hydrocarbon moiety each with or without incorporated heteroatoms, optionally heteroatoms O, N, S, Si, Se, B, wherein the backbone preferably contains 1 to 28 carbon atoms and can be, saturated or unsaturated, substituted or unsubstituted,
while
each attachment point independently can be a substituted or unsubstituted carbon- or heteroatom
and
in case poly ethylene glycole (PEG) moieties are incorporated in accordance to the definition, the preferred number of carbon atoms can be exceeded by the number present in the PEG moieties, wherein all PEG moieties together can contain a total amount of
1 to 500 ethylene glycol groups (—(CH2CH2O)n— with n=1 to 500) in case of divalent linking residue (LR1)
or
1 to 750 ethylene glycol groups (—(CH2CH2O)n— with n=1 to 750) in case of trivalent linking residue (LR1)
or
1 to 1000 ethylene glycol groups (—(CH2CH2O)n— with n=1 to 1000) in case of tetravalent linking residue (LR1),
and if substituted,
substituents include optionally one or more alkyl groups, halogen atoms, haloalkyl groups, (un)substituted aryl groups, (un)substituted heteroaryl groups, amino, oxo, nitro, cyano, azido, hydroxy, mercapto, keto, carboxy, carbamoyl, expoxy, methoxy, ethynyl,
and/or substituents can further be connected to each other, forming a ringsystem with 1 to 4 rings, with or without incorporated heteroatoms, saturated or unsaturated, substituted or unsubstituted, aliphatic or aromatic;
LR2, LR3 and LR4 are divalent hydrocarbon moieties with or without incorporated heteroatoms, optionally heteroatoms O, N, S, Si, Se, B, wherein the backbone preferably contains 1 to 28 carbon atoms and can be, saturated or unsaturated, substituted or unsubstituted,
while
each attachment point independently can be a substituted or unsubstituted carbon- or heteroatom
and
in case poly ethylene glycole (PEG) moieties are incorporated in accordance to the definition, the preferred number of carbon atoms can be exceeded by the number present in the PEG moieties, wherein all PEG moieties together can contain a total amount of 1 to 500 ethylene glycol groups (—(CH2CH2O)n— with n=1 to 500) and, if substituted,
substituents include optionally one or more alkyl groups, halogen atoms, haloalkyl groups, (un)substituted aryl groups, (un)substituted heteroaryl groups, amino, oxo, nitro, cyano, azido, hydroxy, mercapto, keto, carboxy, carbamoyl, expoxy, methoxy, ethynyl
and/or substituents can further be connected to each other, forming a ringsystem with 1 to 4 rings, with or without incorporated heteroatoms, saturated or unsaturated, substituted or unsubstituted, aliphatic or aromatic;
wherein in case of formula (II) if G4 is absent, LR4 is absent, too, and
wherein in case of formula (II) if G3 and G4 are absent, LR3 and LR4 are absent, too, and wherein
G1, G2, G3 and G4 can further be salts and/or hydrates
while optionally suitable salts of the particular phosphate moiety are lithium, sodium, potassium, calcium, magnesium, zinc or ammonium, and trialkylammonium, dialkylammonium, alkylammonium, e.g., triethylammonium, trimethylammonium, diethylammonium and octylammonium;
and wherein
G1, G2, G3 and G4 can optionally be isotopically or radioactively labeled, be PEGylated, immobilized or be labeled with a dye or another reporting group,
wherein
the reporting group(s) and/or dye(s)
(a) are coupled to G1, G2, G3 and/or G4 via a linking residue (LR5), bound covalently to or replacing any of the particular residues R1, R4 and/or R5 independently for each G unit (G1, G2, G3 and/or G4) while LR5 can be as defined for LR2
or
(b) in case of formula (I) can replace G3 and/or G4
and wherein
optionally suitable dyes include fluorescent dyes such as fluorescein, anthraniloyl, N-methylanthraniloyl, dansyl or the nitro-benzofurazanyl (NBD) system, rhodamine-based dyes such as Texas Red or TAMRA, cyanine dyes such as Cy™3, Cy™5, Cy™7, EVOblue™10, EVOblue™30, EVOblue™90, EVOblue™100 (EVOblue™-family), the BODIPY™-family, Alexa Fluor™-family, DY-547P1, DY-647P1, coumarines, acridines, oxazones, phenalenones, fluorescent proteins such as GFP, BFP and YFP, and near and far infrared dyes
and wherein
reporting groups optionally include quantum dots, biotin and tyrosylmethyl ester
and wherein
PEGylated refers to the attachment of a single or multiple LRPEG group(s) independently, wherein LRPEG can be as defined for LR2, with the provisos that in this case (i) of LR2 only one terminus is connected to a G unit (G1, G2, G3 and/or G4) by covalently binding to or replacing any of the particular residues R1, R4 and/or R5 independently for each G unit (G1, G2, G3 and/or G4), and (ii) the other terminus of LR2 is either an alkyl group or a reactive group that allows for conjugation reactions and/or hydrogen bonding
while, optionally, non limiting examples of reactive groups are, —NH2, —SH, —OH, —COOH, —N3, —NHS-ester, halogen group, epoxide, ethynyl, allyl
and with the proviso (iii) that LRPEG has incorporated ethylene glycol moieties ((CH2CH2O)n— with n=2 to 500)
with the proviso that the compound of formula (I) and/or (II), is not selected from
Figure US20210317156A1-20211014-C00578
Guanosine-3′, 5′-cyclic monophosphate-[8-thioethylsulfonyl-(ethyloxy)n-ethylsulfonylethylthio-8]-guanosine-3′, 5′-cyclic monophosphate (polydispers compound arising from synthesis with polydispers bis vinylsulfonyl-PEGn with Mw of 800 g/mol, 1.2 kg/mol, 3.4 kg/mol or 20 kg/mol; or monodispers compound with n=6).
2. A compound according to claim 1, wherein at least two G units are unequally substituted.
3. A compound according to claim 1, wherein
(a) in case of formula (I) G3 and G4 are absent
or
in case of formula (II) G3, G4, LR3 and LR4 are absent;
and wherein
R4 is not H and/or R5 is not NH2
or
(b) in case of formula (I) G3 and G4 are absent
or
in case of formula (II) G3, G4, LR3 and LR4 are absent.
4. A compound according to claim 1 wherein
all R7 are SH and all R5 are O
or
all R7 are O and all R5 are OH.
5. A compound according to claim 1 wherein the linking residues LR1, LR2, LR3 and LR4 are further subdivided as depicted in formula (Ib) and (IIb),
Figure US20210317156A1-20211014-C00579
wherein:
coupling functions C1, C1′, C2, C2′, C3, C3′, C4 and C4′ independently from each other can be absent or as defined by structures selected from the group consisting of
Figure US20210317156A1-20211014-C00580
Figure US20210317156A1-20211014-C00581
while connectivity can be as depicted or reversed as exemplified by
G1-O—C(O)—NH—S2 versus G1-NH—C(O)—O—S2
an wherein in case the coupling function (C1, C1′, C2, C2′, C3, C3′, C4 and/or C4′) does not replace the residue of the G unit (R1, R4 and/or R5 of G1-4) but bind to it, the particular residue (R1, R4 and/or R5) involved in coupling of G units (or G unit with dye(s) or other reporting group(s)) independently from each other is
as defined in any of the preceding claims, wherein an endstanding group is replaced by or transformed to the coupling function
or
selected from the group depicted hereinafter (wherein if present, Q1 connects to the G unit)
Figure US20210317156A1-20211014-C00582
Figure US20210317156A1-20211014-C00583
Figure US20210317156A1-20211014-C00584
Figure US20210317156A1-20211014-C00585
Figure US20210317156A1-20211014-C00586
Figure US20210317156A1-20211014-C00587
Figure US20210317156A1-20211014-C00588
Figure US20210317156A1-20211014-C00589
and wherein
the linker (L) is selected from the group consisting of
Dimeric Linkers Trimeric Linkers Tetrameric linkers
Figure US20210317156A1-20211014-C00590
Figure US20210317156A1-20211014-C00591
Figure US20210317156A1-20211014-C00592
Figure US20210317156A1-20211014-C00593
Figure US20210317156A1-20211014-C00594
Figure US20210317156A1-20211014-C00595
Figure US20210317156A1-20211014-C00596
Figure US20210317156A1-20211014-C00597
Figure US20210317156A1-20211014-C00598
Figure US20210317156A1-20211014-C00599
Figure US20210317156A1-20211014-C00600
Figure US20210317156A1-20211014-C00601
Figure US20210317156A1-20211014-C00602
Figure US20210317156A1-20211014-C00603
Figure US20210317156A1-20211014-C00604
Figure US20210317156A1-20211014-C00605
Figure US20210317156A1-20211014-C00606
Figure US20210317156A1-20211014-C00607
Figure US20210317156A1-20211014-C00608
Figure US20210317156A1-20211014-C00609
Figure US20210317156A1-20211014-C00610
Figure US20210317156A1-20211014-C00611
Figure US20210317156A1-20211014-C00612
Figure US20210317156A1-20211014-C00613
Figure US20210317156A1-20211014-C00614
Figure US20210317156A1-20211014-C00615
Figure US20210317156A1-20211014-C00616
Figure US20210317156A1-20211014-C00617
Figure US20210317156A1-20211014-C00618
Figure US20210317156A1-20211014-C00619
Figure US20210317156A1-20211014-C00620
Figure US20210317156A1-20211014-C00621
Figure US20210317156A1-20211014-C00622
Figure US20210317156A1-20211014-C00623
Figure US20210317156A1-20211014-C00624
Figure US20210317156A1-20211014-C00625
Figure US20210317156A1-20211014-C00626
Figure US20210317156A1-20211014-C00627
Figure US20210317156A1-20211014-C00628
Figure US20210317156A1-20211014-C00629
Figure US20210317156A1-20211014-C00630
Figure US20210317156A1-20211014-C00631
while
n for each sidechain within a particular linker of the list herebefore can have an equal or individual value as defined
and
all chiral, diastereomeric, racemic, epimeric, and all geometric isomeric forms of linkers (L) of the list herebefore, though not explicitly depicted, are included herein
and
cationic linkers (L) such as ammonium-derivatives are salts containing chloride-, bromide-, iodide- phosphate-, carbonate-, sulfate-, acetate- or any other physiologically accepted counterion
and wherein
spacers (S1, S2, S3 and S4) can be equal or individual within a particular compound, be absent or be —(CH2)n1—(CH2CH2ß)m-(CH2)n2— (with ß=O, S or NH; m=1 to 500, n1=0 to 8, n2=0 to 8, while both n1 and n2 can independently be equal or individual) or —(CH2)n— (with n=1 to 24).
6. A compound according to claim 1
wherein
R1 can independently be H, halogen, azido, nitro, alkyl, acyl, aryl, OH, O-alkyl, O-aryl, SH, S-alkyl, S-aryl, S-aralkyl, S(O)-alkyl, S(O)-aryl, S(O)-aralkyl, S(O)-benzyl, S(O)2-alkyl, S(O)2-aryl, S(O)2-aralkyl, amino, NH-alkyl, NH-aryl, NH-aralkyl, NR9R10, SiR13R14R15 wherein R9, R10, R13, R14, R15 are alkyl;
and/or
R4 can independently be absent, H, amino, alkyl, aralkyl, nitro, N-oxide or can form together with Y and R5 and the carbon bridging Y and R5 an imidazole ring which can be unsubstituted or substituted with alkyl, aryl or aralkyl, or can form together with Y and R5 and the carbon bridging Y and R5 an imidazolinone as depicted above (structure IV, V, n=1) or an homologous ring (n=2 to 8) which each can be unsubstituted or substituted (not depicted) with alkyl, aryl or aralkyl.
and/or
R5 can independently H, halogen, NH-carbamoyl-alkyl, NH-carbamoyl-aryl, NH-carbamoyl-aralkyl, amino, NH-alkyl, NH-aryl, NH-aralkyl, NR30R31 wherein R30 and R31 are alkyl, or can form together with R4, Y and the carbon bridging Y and R5 an imidazole ring which can be unsubstituted or substituted with alkyl, aryl or aralkyl, or can form together with R4, Y and the carbon bridging Y and R5 an imidazolinone ring as depicted above (structure IV, V, n=1) or an homologous ring (n=2 to 8) which each can be unsubstituted or substituted (not depicted) with alkyl, aryl or aralkyl.;
and/or
R7 is OH, O-alkyl, O-aryl, O-aralkyl, O-acyl, SH, S-alkyl, S-aryl, S-aralkyl, borano (BH3), methylborano, dimethylborano, cyanoborano (BH2CN),
and
R8 is OH, O-alkyl, O-aryl, O-aralkyl, O-acyl,
7. A compound according to claim 1
wherein
R1 is H, Cl, Br, I, F, N3, NO2, OH, SH, NH2, CF3, 2-furyl, 3-furyl, 2-bromo-5-furyl, (2-furyl)thio, (3-(2-methyl)furyl)thio, (3-furyl)thio, 2-thienyl, 3-thienyl, (5-(1-methyl)tetrazolyl)thio, 1,1,2-trifluoro-1-butenthio, (2-(4-phenyl)imidazolyl)thio, (2-benzothiazolyl)thio, (2,6-dichlorophenoxypropyl)thio, 2-(N-(7-nitrobenz-2-oxa-1,3-diazol-4-yl)amino)ethylthio, (4-bromo-2,3-dioxobutyl)thio, [2-[(fluoresceinylthioureido)amino]ethyl]thio, 2,3,5,6-tetrafluorophenylthio, (7-(4-methyl)coumarinyl)thio, (4-(7-methoxy)coumarinyl)thio, (2-naphtyl)thio, (2-(1-bromo)naphtyl)thio, benzimidazolyl-2-thiobenzothiazolylthio, 4-pyridyl, (4-pyridyl)thio, 2-pyridylthio, 5-amino-3-oxopentylamino, 8-amino-3,6-dioxaoctylamino, 19-amino-4,7,10,13,16-pentaoxanonadecylamino, 17-amino-9-aza-heptadecylamino, 4-(N-methylanthranoyl)aminobutylamino, dimethylamino, diethylamino, 4-morpholino, 1-piperidino, 1-piperazino, triphenyliminophosphoranyl or residue R1 is as depicted hereinafter as residue entry 1 or 2:
residue entry 1:
Figure US20210317156A1-20211014-C00632
wherein
m=0-6;
Q=S, S(O), S(O)2, O, NH, Se, CH2, C(O);
X1, X2 and X3 can be equal or independently be H, OH, NH2, N3, SH, CN, NO2, F, Cl, Br, I, (CH2)nCH3 (with n=0-5), i-Pr, t-Bu, (CH2)nC≡CH (with n=0-5), (CH2)nC═CH2 (with n=0-5), CH2OH, (CH2)nOCH3 (with n=1-2), CH2N(CH3)2, O(CH2)nCH3 (with n=0-5), Oi-Pr, OCy, OCyp, OBn, OC(O)CH3, OC(O)Ph, OCF3, N(CH3)2, NH(CH2)nCH3 (with n=0-5), NHC(O)t-Bu, NHC(O)Ph, NHC(O)Ot-Bu, NHC(O)CH3, NHC(O)CH2N3, B(OH)2, CF3, C(O)OH, C(O)OCH3, C(O)Oi-Pr, C(O)Ot-Bu, C(O)OPh, C(O)OBn, C(O)NH2, C(O)N(CH3)2, C(O)NHPh, C(O)NHBn, C(O)CF3, CH2C(O)OH, CH2C(O)OCH3, CH2C(O)Oi-Pr, CH2C(O)Ot-Bu, CH2C(O)OBn, S(CH2)nCH3 (with n=0-5), S(CH2)nOEt (with n=1-4), SBn, SO2CH3, SO2CF3,
Figure US20210317156A1-20211014-C00633
 (with Y1═H, SH, CN, Ph, F, CH3, OCH3, SCH3, 4-thiophenyl, NO2, pentyl),
Figure US20210317156A1-20211014-C00634
 (with Y2═H, SH, F),
Figure US20210317156A1-20211014-C00635
 (with Y3═H, SH),
Figure US20210317156A1-20211014-C00636
residue entry 2:
Figure US20210317156A1-20211014-C00637
wherein
m=0-6;
n=1-6;
Q=S, S(O), S(O)2, O, NH, Se;
and/or
R4 is absent, amino, N-oxide or residue R4 is as depicted hereinafter as residue entry 1, 2, 3 or 4:
residue entry 1:
Figure US20210317156A1-20211014-C00638
wherein
m=1-6;
X1, X2 and X3 can be equal or independently be H, N3, CN, NO2, F, Cl, Br, I, (CH2)nCH3 (with n=0-5), i-Pr, t-Bu, (CH2)nC≡CH (with n=0-5), (CH2)nC═CH2 (with n=0-5), (CH2)nOCH3 (with n=1-2), CH2N(CH3)2, O(CH2)nCH3 (with n=0-5), Oi-Pr, OBn, OC(O)CH3, OC(O)Ph, OCF3, N(CH3)2, NHC(O)t-Bu, NHC(O)Ph, NHC(O)Ot-Bu, NHC(O)CH3, NHC(O)CH2N3, CF3, C(O)OCH3, C(O)Oi-Pr, C(O)Ot-Bu, C(O)OPh, C(O)OBn, C(O)NH2, C(O)N(CH3)2, C(O)NHPh, C(O)NHBn, C(O)CF3, CH2C(O)OCH3, CH2C(O)Oi-Pr, CH2C(O)Ot-Bu, CH2C(O)OBn, S(CH2)nCH3 (with n=0-5), S(CH2)nOEt (with n=1-4), SBn, SPh, SO2CF3,
Figure US20210317156A1-20211014-C00639
 (with Y1═H, CN, Ph, F, CH3, OCH3, SCH3, NO2, pentyl),
Figure US20210317156A1-20211014-C00640
 (with Y2═H, F),
Figure US20210317156A1-20211014-C00641
residue entry 2:
Figure US20210317156A1-20211014-C00642
wherein
X1 can be H, CH3, Ph;
X2 can be H, Ph, 2-naphtyl, 9-phenanthryl, 1-pyrenyl, 2,3-dihydro-1,4-benzodioxin-6-yl, dibenzo[b,d]furan-2-yl, 2,3-dihydro-1-benzofuran-5-yl, 1-benzothien-5-yl, 1-benzofuran-5-yl, cyclopropyl, 1-adamantyl, C(Ph)3, 2-thienyl, 3-chloro-2-thienyl, 3-thienyl, 1,3-thiazol-2-yl, 2-pyridinyl, 5-chloro-2-thienyl, 1-benzofuran-2-yl,
X3, X4 and X5 can independently be H, OH, NH, CH3, Cl, Br, F, CN, N3, CF3, OCF3, NO2, C(O)OH, C(O)OCH3, OCH3, OBn, O-benzoyl, SCH3, t-Bu, N(CH3)2, S-phenyl, Ph, S(O)2CH3, C(O)NH2, NHS(O)2CH3;
residue entry 3:
Figure US20210317156A1-20211014-C00643
wherein deviating from the definition above, any hydrogen atom attached to any of the ring carbon atoms including depicted, implied, or expressly defined hydrogen, or both hydrogen atoms (m=2) attached to the same particular carbon atom, can be replaced by one or two (equal) “floating groups” X1 respectively, as long as a stable structure is formed,
while m=1 or 2;
n=1-4;
X1 can be H, CH3, Et, Pr, i-Pr, Bu, F, Ph, (CH2)2OH*,
Only for first case;
residue entry 4:
Figure US20210317156A1-20211014-C00644
wherein
m=1-6;
n=1-6.
and/or
R5 is H, NH2, F, Cl, Br, I, methylamino, NH-benzyl, NH-phenyl, NH-4-azidophenyl, NH-phenylethyl, NH-phenylpropyl, 2-aminoethylamino, n-hexylamino, 6-amino-n-hexylamino, 8-amino-3,6-dioxaoctylamino, dimethylamino, 1-piperidino, 1-piperazino or can form together with R4, Y and the carbon bridging Y and R5 a ring system as depicted in the list hereinabove (entry 2 and 3);
and/or
R7 OH, methyloxy, ethyloxy, cyanoethyloxy, acetoxymethyloxy, pivaloyloxymethyloxy, methoxymethyloxy, propionyloxymethyloxy, butyryloxymethyloxy, acetoxyethyloxy, acetoxybutyloxy, acetoxyisobutyloxy, phenyloxy, benzyloxy, 4-acetoxybenzyloxy, 4-pivaloyloxybenzyloxy, 4-isobutyryloxybenzyloxy, 4-octanoyloxybenzyloxy, 4-benzoyloxybenzyloxy, acetyloxy, propionyloxy, benzoyloxy, SH, methylthio, acetoxymethylthio, pivaloyloxymethylthio, methoxymethylthio, propionyloxymethylthio, butyryloxymethylthio, cyanoethylthio, phenylthio, benzylthio, 4-acetoxybenzylthio, 4-pivaloyloxybenzylthio, 4-isobutyryloxybenzylthio, 4-octanoyloxybenzylthio, 4-benzoyloxybenzylthio, borano (BH3), methylborano, dimethylborano, cyanoborano (BH2CN);
and
R8 is OH, methyloxy, ethyloxy, cyanoethyloxy, acetoxymethyloxy, pivaloyloxymethyloxy, methoxymethyloxy, propionyloxymethyloxy, butyryloxymethyloxy, acetoxyethyloxy, acetoxybutyloxy, acetoxyisobutyloxy, phenyloxy, benzyloxy, 4-acetoxybenzyloxy, 4-pivaloyloxybenzyloxy, 4-isobutyryloxybenzyloxy, 4-octanoyloxybenzyloxy, 4-benzoyloxybenzyloxy, acetyloxy, propionyloxy, benzoyloxy;
8. A compound according to claim 1
wherein
R1 is H, Cl, Br, I, F, N3, NO2, OH, SH, NH2, CF3, 2-furyl, 3-furyl, (2-furyl)thio, (3-(2-methyl)furyl)thio, (3-furyl)thio, 2-thienyl, 3-thienyl, (5-(1-methyl)tetrazolyl)thio, 1,1,2-trifluoro-1-butenthio, (2-(4-phenyl)imidazolyl)thio, (2-benzothiazolyl)thio, (2,6-dichlorophenoxypropyl)thio, 2-(N-(7-nitrobenz-2-oxa-1,3-diazol-4-yl)amino)ethylthio, (4-bromo-2,3-dioxobutyl)thio, [2-[(fluoresceinylthioureido)amino]ethyl]thio, 2,3,5,6-tetrafluorophenylthio, (7-(4-methyl)coumarinyl)thio, (4-(7-methoxy)coumarinyl)thio, (2-naphtyl)thio, (2-(1-bromo)naphtyl)thio, benzimidazolyl-2-thio, benzothiazolylthio, 4-pyridyl, (4-pyridyl)thio, 2-pyridylthio, 5-amino-3-oxopentylamino, 8-amino-3,6-dioxaoctylamino, 19-amino-4,7,10,13,16-pentaoxanonadecylamino, 17-amino-9-aza-heptadecylamino, 4-(N-methylanthranoyl)aminobutylamino, dimethylamino, diethylamino, 4-morpholino, 1-piperidino, 1-piperazino, triphenyliminophosphoranyl or residue R1 is as depicted hereinafter as residue entry 1 or 2:
residue entry 1:
Figure US20210317156A1-20211014-C00645
wherein
m=0-6;
Q=S, S(O), S(O)2, NH;
X1, X2 and X3 can be equal or independently be H, OH, NH2, N3, SH, CN, NO2, F, Cl, Br, I, (CH2)nCH3 (with n=0-5), i-Pr, t-Bu, Ph, (CH2)nC≡CH (with n=0-5), (CH2)nC═CH2 (with n=0-5), CH2OH, (CH2)nOCH3 (with n=1-2), CH2N(CH3)2, O(CH2)nCH3 (with n=0-5), Oi-Pr, OCy, OCyp, OPh, OBn, OC(O)CH3, OC(O)Ph, OCF3, N(CH3)2, NH(CH2)nCH3 (with n=0-5), NHC(O)t-Bu, NHC(O)Ph, NHC(O)Ot-Bu, NHC(O)CH3, NHC(O)CH2N3, B(OH)2, CF3, C(O)OH, C(O)OCH3, C(O)Oi-Pr, C(O)Ot-Bu, C(O)OPh, C(O)OBn, C(O)NH2, C(O)N(CH3)2, C(O)NHPh, C(O)NHBn, C(O)CF3, CH2C(O)OH, CH2C(O)OCH3, CH2C(O)Oi-Pr, CH2C(O)Ot-Bu, CH2C(O)OBn, S(CH2)nCH3 (with n=0-5), S(CH2)nOEt (with n=1-4), SBn, SPh,
Figure US20210317156A1-20211014-C00646
residue entry 2:
Figure US20210317156A1-20211014-C00647
wherein
m=0-6;
n=1-6;
Q=S, S(O), S(O)2, NH;
and/or
R4 is absent, amino, N-oxide or residue R4 is as depicted hereinafter as residue entry 1, 2, 3 or 4:
residue entry 1:
Figure US20210317156A1-20211014-C00648
wherein
m=1-3;
X1, X2 and X3 can be equal or independently be H, N3, CN, NO2, F, Cl, Br, I, (CH2)nCH3 (with n=0-5), i-Pr, t-Bu, Ph, (CH2)nC≡CH (with n=0-5), (CH2)nC═CH2 (with n=0-5), (CH2)nOCH3 (with n=1-2), CH2N(CH3)2, O(CH2)nCH3 (with n=0-5), Oi-Pr, OPh, OBn, OC(O)CH3, OC(O)Ph, OCF3, N(CH3)2, NHC(O)t-Bu, NHC(O)Ph, NHC(O)Ot-Bu, NHC(O)CH3, NHC(O)CH2N3, CF3, C(O)OCH3, C(O)Oi-Pr, C(O)Ot-Bu, C(O)OPh, C(O)OBn, C(O)NH2, C(O)N(CH3)2, C(O)NHPh, C(O)NHBn, C(O)CF3, CH2C(O)OCH3, CH2C(O)Oi-Pr, CH2C(O)Ot-Bu, CH2C(O)OBn, S(CH2)nCH3 (with n=0-5), S(CH2)nOEt (with n=1-4), SBn, SPh, SO2CF3,
Figure US20210317156A1-20211014-C00649
residue entry 2:
Figure US20210317156A1-20211014-C00650
wherein
X1 can be H, CH3, Ph;
X2 can be H, Ph, 2-naphtyl, 9-phenanthryl, 1-pyrenyl, 2,3-dihydro-1,4-benzodioxin-6-yl, dibenzo[b,d]furan-2-yl, 2,3-dihydro-1-benzofuran-5-yl, 1-benzothien-5-yl, 1-benzofuran-5-yl, cyclopropyl, 1-adamantyl, C(Ph)3, 2-thienyl, 3-chloro-2-thienyl, 3-thienyl, 1,3-thiazol-2-yl, 2-pyridinyl, 1-benzofuran-2-yl;
X3, X4 and X5 can independently be H, OH, NH, CH3, Cl, Br, F, CN, N3, CF3, OCF3, NO2, C(O)OH, C(O)OCH3, OCH3, OBn, O-benzoyl, SCH3, t-Bu, N(CH3)2, S-phenyl, Ph, S(O)2CH3, C(O)NH2, NHS(O)2CH3;
residue entry 3:
Figure US20210317156A1-20211014-C00651
wherein deviating from the definition above, any hydrogen atom attached to any of the ring carbon atoms including depicted, implied, or expressly defined hydrogen, or both hydrogen atoms (m=2) attached to the same particular carbon atom, can be replaced by one or two (equal) “floating groups” X1 respectively, as long as a stable structure is formed;
while m=1 or 2;
n=1-4;
X1 can be H, CH3, Et, Pr, i-Pr, Bu, F, Ph, (CH2)2OH*,
* Only for first case;
residue entry 4:
or
Figure US20210317156A1-20211014-C00652
wherein
m=1-6;
n=1-6;
and/or
R5 is H, NH2, F, Cl, Br, I, methylamino, NH-benzyl, NH-phenyl, NH-4-azidophenyl, NH-phenylethyl, NH-phenylpropyl, 2-aminoethylamino, n-hexylamino, 6-amino-n-hexylamino, 8-amino-3,6-dioxaoctylamino, dimethylamino, 1-piperidino, 1-piperazino or can form together with R4, Y and the carbon bridging Y and R5 a ring system as depicted in the list hereinabove (entry 2 and 3);
and/or
residues involved in connecting a G unit with another G unit or a dye or another reporting group can be R1, R4 and/or R5 in which case the particular residue is
as defined just above (for the particular residue), wherein an endstanding group is transformed to or replaced by a coupling function
or
as depicted in the following list (if present Q1 connects to the G unit):
Figure US20210317156A1-20211014-C00653
Figure US20210317156A1-20211014-C00654
Figure US20210317156A1-20211014-C00655
Figure US20210317156A1-20211014-C00656
Figure US20210317156A1-20211014-C00657
Figure US20210317156A1-20211014-C00658
Figure US20210317156A1-20211014-C00659
and/or
coupling functions (C1-4 and C1′-4) are selected from the group consisting of
Figure US20210317156A1-20211014-C00660
and/or
the linker (L) can be absent or as depicted in the following list of linker (L):
Figure US20210317156A1-20211014-C00661
while n for each sidechain within a particular linker can have an equal or individual value as defined. and/or
R7 is OH, methyloxy, ethyloxy, cyanoethyloxy, acetoxymethyloxy, pivaloyloxymethyloxy, methoxymethyloxy, propionyloxymethyloxy, butyryloxymethyloxy, acetoxyethyloxy, acetoxybutyloxy, acetoxyisobutyloxy, phenyloxy, benzyloxy, 4-acetoxybenzyloxy, 4-pivaloyloxybenzyloxy, 4-isobutyryloxybenzyloxy, 4-octanoyloxybenzyloxy, 4-benzoyloxybenzyloxy, acetyloxy, propionyloxy, benzoyloxy, SH, methylthio, acetoxymethylthio, pivaloyloxymethylthio, methoxymethylthio, propionyloxymethylthio, butyryloxymethylthio, cyanoethylthio, phenylthio, benzylthio, 4-acetoxybenzylthio, 4-pivaloyloxybenzylthio, 4-isobutyryloxybenzylthio, 4-octanoyloxybenzylthio, 4-benzoyloxybenzylthio, borano (BH3), methylborano, dimethylborano, cyanoborano (BH2CN);
and
R8 is OH, methyloxy, ethyloxy, cyanoethyloxy, acetoxymethyloxy, pivaloyloxymethyloxy, methoxy, methyloxy, propionyloxymethyloxy, butyryloxymethyloxy, acetoxyethyloxy, acetoxybutyloxy, acetoxyisobutyloxy, phenyloxy, benzyloxy, 4-acetoxybenzyloxy, 4-pivaloyloxybenzyloxy, 4-isobutyryloxybenzyloxy, 4-octanoyloxybenzyloxy, 4-benzoyloxybenzyloxy, acetyloxy, propionyloxy, benzoyloxy;
9. A compound according to claim 1
wherein
R1 is H, Cl, Br, SH, 2-furyl, 3-furyl, (2-furyl)thio, (3-(2-methyl)furyl)thio, (3-furyl)thio, 2-thienyl, 3-thienyl, (5-(1-methyl)tetrazolyl)thio, 1,1,2-trifluoro-1-butenthio, (2-(4-phenyl)imidazolyl)thio, (2-benzothiazolyl)thio, (2,6-dichlorophenoxypropyl)thio, 2-(N-(7-nitrobenz-2-oxa-1,3-diazol-4-yl)amino)ethylthio, (4-bromo-2, 3-dioxobutyl)thio, [2-[(fluoresceinylthioureido)amino]ethyl]thio, 2,3,5,6-tetrafluorophenylthio, (7-(4-methyl)coumarinyl)thio, (4-(7-methoxy)coumarinyl)thio, (2-naphtyl)thio, (2-(1-bromo)naphtyl)thio, benzimidazolyl-2-thio, benzothiazolylthio, 4-pyridyl, (4-pyridyl)thio, 2-pyridylthio, triphenyliminophosphoranyl or residue R1 is as depicted hereinafter as residue entry 1 or 2:
residue entry 1:
Figure US20210317156A1-20211014-C00662
wherein
m=0-3;
Q=S;
X1, X2 and X3 can be equal or independently be H, OH, NH2, N3, SH, CN, NO2, F, Cl, Br, I, (CH2)nCH3 (with n=0-5), i-Pr, t-Bu, Ph, (CH2)nC≡CH (with n=0-5), (CH2)nC═CH2 (with n=0-5), CH2OH, (CH2)nOCH3 (with n=1-2), CH2N(CH3)2, O(CH2)nCH3 (with n=0-5), Oi-Pr, OCy, OCyp, OPh, OBn, OC(O)CH3, OC(O)Ph, OCF3, N(CH3)2, NH(CH2)nCH3 (with n=0-5), NHC(O)t-Bu, NHC(O)Ph, NHC(O)Ot-Bu, NHC(O)CH3, NHC(O)CH2N3, B(OH)2, CF3, C(O)OH, C(O)OCH3, C(O)Oi-Pr, C(O)Ot-Bu, C(O)OPh, C(O)OBn, C(O)NH2, C(O)N(CH3)2, C(O)NHPh, C(O)NHBn, C(O)CF3, CH2C(O)OH, CH2C(O)OCH3, CH2C(O)Oi-Pr, CH2C(O)Ot-Bu, CH2C(O)OBn, S(CH2)nCH3 (with n=0-5), S(CH2)nOEt (with n=1-4), SBn, SPh,
Figure US20210317156A1-20211014-C00663
residue entry 2:
Figure US20210317156A1-20211014-C00664
wherein
m=0-6;
n=1-6;
Q=S.
and/or
R4 is absent or as depicted hereinafter as residue entry 1, 2, 3 or 4:
residue entry 1:
Figure US20210317156A1-20211014-C00665
wherein
m=1-3;
X1, X2 and X3 can be equal or independently be H, N3, CN, NO2, F, Cl, Br, I, (CH2)nCH3 (with n=0-5), i-Pr, t-Bu, Ph, (CH2)nC≡CH (with n=0-5), (CH2)nC═CH2 (with n=0-5), (CH2)nOCH3 (with n=1-2), CH2N(CH3)2, O(CH2)nCH3 (with n=0-5), Oi-Pr, OPh, OBn, OC(O)CH3, OC(O)Ph, OCF3, N(CH3)2, NHC(O)t-Bu, NHC(O)Ph, NHC(O)Ot-Bu, NHC(O)CH3, NHC(O)CH2N3, CF3, C(O)OCH3, C(O)Oi-Pr, C(O)Ot-Bu, C(O)OPh, C(O)OBn, C(O)NH2, C(O)N(CH3)2, C(O)NHPh, C(O)NHBn, C(O)CF3, CH2C(O)OCH3, CH2C(O)Oi-Pr, CH2C(O)Ot-Bu, CH2C(O)OBn, S(CH2)nCH3 (with n=0-5), S(CH2)nOEt (with n=1-4), SBn, SPh, SO2CF3,
Figure US20210317156A1-20211014-C00666
residue entry 2:
Figure US20210317156A1-20211014-C00667
wherein
X1 can be H, CH3, Ph;
X2 can be H, Ph, 2-naphtyl, 9-phenanthryl, 1-pyrenyl, 2,3-dihydro-1,4-benzodioxin-6-yl, dibenzo[b,d]furan-2-yl, 2,3-dihydro-1-benzofuran-5-yl, 1-benzothien-5-yl, 1-benzofuran-5-yl, cyclopropyl, 1-adamantyl, C(Ph)3, 2-thienyl, 3-chloro-2-thienyl, 3-thienyl, 1,3-thiazol-2-yl, 2-pyridinyl, 1-benzofuran-2-yl;
X3, X4 and X5 can independently be H, OH, NH, CH3, Cl, Br, F, CN, N3, CF3, OCF3, NO2, C(O)OH, C(O)OCH3, OCH3, OBn, O-benzoyl, SCH3, t-Bu, N(CH3)2, S-phenyl, Ph, S(O)2CH3, C(O)NH2, NHS(O)2CH3;
residue entry 3:
Figure US20210317156A1-20211014-C00668
wherein
n=1-4;
residue entry 4:
Figure US20210317156A1-20211014-C00669
wherein
m=1-3;
n=1-6.
and/or
R5 is NH2, or can form together with R4, Y and the carbon bridging Y and R5 a ring system as depicted in the list hereinabove (entry 2 and 3);
and/or
residues involved in connecting a G unit with another G unit or a dye or another reporting group can be R1, R4 and R5, in which case the particular residue is
as defined just above (for the particular residue), wherein an endstanding group is transformed to or replaced by a coupling function
or
as depicted in the following list (if present Q1 connects to the G unit)
R1 R4 R4 + R5
Figure US20210317156A1-20211014-C00670
Figure US20210317156A1-20211014-C00671
Figure US20210317156A1-20211014-C00672
Figure US20210317156A1-20211014-C00673
Figure US20210317156A1-20211014-C00674
Figure US20210317156A1-20211014-C00675
Figure US20210317156A1-20211014-C00676
Figure US20210317156A1-20211014-C00677
and/or
coupling functions (C1-4 and C1′-4′) are as depicted by structures selected from the group consisting of
Figure US20210317156A1-20211014-C00678
and/or
R7 OH, methyloxy, ethyloxy, cyanoethyloxy, acetoxymethyloxy, pivaloyloxymethyloxy, methoxy, methyloxy, propionyloxymethyloxy, butyryloxymethyloxy, acetoxy ethyloxy, acetoxybutyloxy, acetoxyisobutyloxy, phenyloxy, benzyloxy, 4-acetoxybenzyl oxy, 4-pivaloyloxybenzyloxy, 4-isobutyryloxybenzyloxy, 4-octanoyloxybenzyloxy, 4-benzoyloxybenzyloxy, acetyloxy, propionyloxy, benzoyloxy, SH, methylthio, acetoxymethylthio, pivaloyloxymethylthio, methoxymethylthio, propionyloxymethylthio, butyryloxymethylthio, cyanoethylthio, phenylthio, benzylthio, 4-acetoxybenzylthio, 4-pivaloyloxybenzylthio, 4-isobutyryloxybenzylthio, 4-octanoyloxybenzylthio, 4-benzoyloxybenzylthio;
and
R5 is OH, methyloxy, ethyloxy, cyanoethyloxy, acetoxymethyloxy, pivaloyloxymethyloxy, methoxy, methyloxy, propionyloxymethyloxy, butyryloxymethyloxy, acetoxy ethyloxy, acetoxybutyloxy, acetoxyisobutyloxy, phenyloxy, benzyloxy, 4-acetoxybenzyloxy, 4-pivaloyloxybenzyloxy, 4-isobutyryloxybenzyloxy, 4-octanoyloxybenzyloxy, 4-benzoyloxybenzyloxy, acetyloxy, propionyloxy, benzoyloxy;
10. A compound according to claim 1 selected from the group consisting of
(1) Guanosine-3′, 5′-cyclic monophosphate-[8-thio-(pentaethoxy)-ethylthio-8]-guanosine-3′, 5′-cyclic monophosphate
(2) Guanosine-3′, 5′-cyclic monophosphate-[8-thiomethylamidomethyl-(pentaethoxy)propylamidomethylthio-8]-guanosine-3′, 5′-cyclic monophosphate
(3) Guanosine-3′, 5′-cyclic monophosphate-[8-thiomethylamido-(octaethoxy)ethylamidomethylthio-8]-guanosine-3′, 5′-cyclic monophosphate
(4) Guanosine-3′, 5′-cyclic monophosphate-[8-(4-thiophenylthio)-(pentaethoxy)-ethyl(4-thiophenylthio)-8]-guanosine-3′, 5′-cyclic monophosphate
(5) β-Phenyl-1, N2-ethenoguanosine-3′, 5′-cyclic monophosphate-[8-thiomethylamido(octaethoxy)-ethylamidomethylthio-8]-β-phenyl-1, N2-ethenoguanosine-3′, 5′-cyclic monophosphate
(6) 8-Bromoguanosine-3′, 5′-cyclic monophosphate-[1, N2-etheno-β-phenyl-4-yl-(1-[1, 2, 3]-triazole-4-yl)-methoxy-(hexaethoxy)-methyl-(4-(4-[1, 2, 3]-triazole-1-yl)-β-phenyl-1, N2-etheno)]-8-bromoguanosine-3′, 5′-cyclic monophosphate
(7) Guanosine-3′, 5′-cyclic monophosphate-[8-thiomethylamido-(octaethoxy)ethylamidomethylthio-8]-β-phenyl-1, N2-ethenoguanosine-3′, 5′-cyclic monophosphate
(8) Guanosine-3′, 5′-cyclic monophosphate-[8-thiomethylamido-(nonadecaethoxy)ethylamidomethylthio-8]-guanosine-3′, 5′-cyclic monophosphate
(9) Guanosine-3′, 5′-cyclic monophosphate-[8-(1-[1, 2, 3]-triazole-4-yl)-methoxy(hexaethoxy)-methyl-(4-[1, 2, 3]-triazole-1-yl)-8]-guanosine-3′, 5′-cyclic monophosphate
(10) Guanosine-3′, 5′-cyclic monophosphate-[8-thiomethylamido-(PEG pd 2000)amidomethylthio-8]-guanosine-3′, 5′-cyclic monophosphate
(11) β-Phenyl-1, N2-ethenoguanosine-3′, 5′-cyclic monophosphate-[8-thiomethylamido(nonadecaethoxy)-ethylamidomethylthio-8]-guanosine-3′, 5′-cyclic monophosphate
(12) β-Phenyl-1, N2-ethenoguanosine-3′, 5′-cyclic monophosphate-[8-thiomethylamido(nonadecaethoxy)-ethylamidomethylthio-8]-β-phenyl-1, N2-ethenoguanosine-3′, 5′-cyclic monophosphate
(13) β-Phenyl-1, N2-ethenoguanosine-3′, 5′-cyclic monophosphate-[8-thiomethylamido(PEG pd 2000)-amidomethylthio-8]-0-phenyl-1, N2-ethenoguanosine-3′, 5′-cyclic monophosphate
(14) Benzene-1, 3, 5-tri-[(8-amidomethyl-(pentaethoxy)propylamidomethylthio)guanosine-3′, 5′-cyclic monophosphate]
(15) Ethylene glycol-bis(2-aminoethylether)-N, N, N′, N′-tetra-[(8-methylamidoethylthio)guanosine-3′, 5′-cyclic monophosphate]
(16) Guanosine-3′, 5′-cyclic monophosphate-[8-thio-(dodecanyl)-thio-8]-guanosine-3′, 5′-cyclic monophosphate
(17) β-Phenyl-1, N2-ethenoguanosine-3′, 5′-cyclic monophosphate-[8-thio-(dodecanyl)thio-8]-0-phenyl-1, N2-ethenoguanosine-3′, 5′-cyclic monophosphate, triethyl ammonium salt
(18) Guanosine-3′, 5′-cyclic monophosphate-[8-thioethylamidomethyl-(1-[1, 2, 3]-triazole-4-yl)-methoxy-(hexaethoxy)-methyl-(4-[1, 2, 3]-triazole-1-yl)methylamidoethylthio-8]-guanosine-3′, 5′-cyclic monophosphate
(19) Guanosine-3′, 5′-cyclic monophosphate-[8-thioethylthio-8]-guanosine-3′, 5′-cyclic monophosphate
(20) Guanosine-3′, 5′-cyclic monophosphate-[8-thioethyl-(1-[1, 2, 3]-triazole-4-yl)methoxy-(hexaethoxy)-methyl-(4-[1, 2, 3]-triazole-1-yl)-ethylthio-8]-guanosine-3′, 5′-cyclic monophosphate
(21) Guanosine-3′, 5′-cyclic monophosphate-[8-thio-(dodecanyl)-(4-thiophenyl-4″-thiophenylthio)-(dodecanyl)-thio-8]-guanosine-3′, 5′-cyclic monophosphate
(22) Guanosine-3′, 5′-cyclic monophosphate-[8-thioethylamidomethyl-(1-[1, 2, 3]-triazole-4-yl)-methoxy-(hexaethoxy)-methyl-(4-(4-[1, 2, 3]-triazole-1-yl)-β-phenyl-1, N2-etheno)]-8-bromoguanosine-3′, 5′-cyclic monophosphate
(23) β-Phenyl-1, N2-ethenoguanosine-3′, 5′-cyclic monophosphate-[8-thioethyl-(1-[1, 2, 3]-triazole-4-yl)-methoxy-(hexaethoxy)-methyl-(4-[1, 2, 3]-triazole-1-yl)-ethylthio-8]-β-phenyl-1, N2-ethenoguanosine-3′, 5′-cyclic monophosphate
(24) 8-Bromoguanosine-3′, 5′-cyclic monophosphate-[1-propylamidomethyl(pentaethoxy)-propylamidomethylthio-8]-β-phenyl-1, N2-ethenoguanosine-3′, 5′-cyclic monophosphate
(25) 8-Bromoguanosine-3′, 5′-cyclic monophosphate-[1-(pentaethoxy)-ethyl-1]-8-bromoguanosine-3′, 5′-cyclic monophosphate
(26) 8-Bromoguanosine-3′, 5′-cyclic monophosphate-[1-propylamidomethyl(pentaethoxy)-propylamidopropyl-1]-8-bromoguanosine-3′, 5′-cyclic monophosphate
(27) 8-Bromoguanosine-3′, 5′-cyclic monophosphate-[1-propylamidomethyl(pentaethoxy)-propylamidomethylthio-8]-guanosine-3′, 5′-cyclic monophosphate
(28) Guanosine-3′, 5′-cyclic monophosphate-[8-(phenyl-4-thio)-(pentaethoxy)-ethyl-(4-thiophenyl)-8]-guanosine-3′, 5′-cyclic monophosphate
(29) β-1, N2—Acetyl-guanosine-3′, 5′-cyclic monophosphate-[8-thiomethylamido(octaethoxy)-ethylamidomethylthio-8]-β-1,N2-acetyl-guanosine-3′, 5′-cyclic monophosphate
(30) 8-Phenylguanosine-3′, 5′-cyclic monophosphate-[1, N2-etheno-0-phenyl-4-yl-(1-[1, 2, 3]-triazole-4-yl)-methoxy-(hexaethoxy)-methyl-(4-(4-[1, 2, 3]-triazole-1-yl)-β-phenyl-1, N2-etheno)]-8-phenylguanosine-3′, 5′-cyclic monophosphate
11. A monomeric compound of formula (III) and/or a monomeric precursor of formula (III) of a compound according to claim 1, wherein the monomeric compound of formula (III) and/or the monomeric precursor of formula (III) is defined as in any of the preceding claims, and preferably wherein the monomeric compound of formula (III) and/or the monomeric precursor of formula (III) complies with the following proviso:
R7 is O and R8 is OH
and further complies with at least one of the following provisos:
R4 is not H and R5 is NH2
wherein R4 is attached via a —CH2— bridge, which is part of R4
or
R5 together with R4, Y and the carbon bridging Y and R5 form a ring system, which can be
a) an imidazolinone ring as depicted hereinafter (n=1) or an homologous ring (n=2 to 8)
Figure US20210317156A1-20211014-C00679
or
b) an imidazole ring, which can be unsubstituted or substituted as depicted hereinafter as residue entry 1 and 2
residue entry 1
Figure US20210317156A1-20211014-C00680
wherein
X1 is H;
X2 can be H, 2-naphtyl, 9-phenanthryl, 1-pyrenyl, 2,3-dihydro-1,4-benzodioxin-6-yl, dibenzo[b,d]furan-2-yl, 2,3-dihydro-1-benzofuran-5-yl, 1-benzothien-5-yl, 1-benzofuran-5-yl, cyclopropyl, 1-adamantyl, C(Ph)3, 2-thienyl, 3-chloro-2-thienyl, 3-thienyl, 1,3-thiazol-2-yl, 2-pyridinyl, 5-chloro-2-thienyl, 1-benzofuran-2-yl;
X3, X4 and X5 can independently be OH, NH, CH3, Cl, Br, F, CN, N3, CF3, OCF3, NO2, C(O)OH, C(O)OCH3, OCH3, OBn, O-benzoyl, SCH3, t-Bu, N(CH3)2, S-phenyl, Ph, S(O)2CH3, C(O)NH2, NHS(O)2CH3, while X4 and X5 can also independently be H;
residue entry 2
Figure US20210317156A1-20211014-C00681
while R1 is as in any of the compounds 31 to 107.
or
R1 is attached via a —S(O)— or —S(O)2— bridge or via a carbon atom of an aromatic ring system, which in each case is part of R1
while R4 is H and R5 is NH2
and in addition complies with the proviso that the monomeric compound of formula (III) and/or the monomeric precursor compound of formula (III) is not selected from the group of compounds consisting of
Figure US20210317156A1-20211014-C00682
and/or
the monomeric compound of formula (III) and/or the monomeric precursor of formula (III) is selected from the group consisting of
(31) 8-Amidomethylthioguanosine-3′, 5′-cyclic monophosphate
(32) 8-(4-Boronatephenylthio)-guanosine-3′, 5′-cyclic monophosphate
(33) 8-(4-Cyanobenzylthio)guanosine-3′, 5′-cyclic monophosphate
(34) 8-(4-(2-Cyanophenyl)-benzylthio)guanosine-3′, 5′-cyclic monophosphate
(35) 8-Cyclohexylmethylthioguanosine-3′, 5′-cyclic monophosphate
(36) 8-(2, 4-Dichlorophenylthio)guanosine-3′, 5′-cyclic monophosphate
(37) 8-Diethylphosphonoethylthio-guanosine-3′, 5′-cyclic monophosphate
(38) 8-Ethylthioguanosine-3′, 5′-cyclic monophosphate
(39) 8-Hexylthioguanosine-3′, 5′-cyclic monophosphate
(40) 8-(4-Isopropylphenylthio)guanosine-3′, 5′-cyclic monophosphate
(41) 8-(3-(2-Methyl)furanyl)thioguanosine-3′, 5′-cyclic monophosphate
(42) 8-(5-(1-Methyl)tetrazolyl)thioguanosine-3′, 5′-cyclic monophosphate
(43) 8-(4-Methoxybenzylthio)guanosine-3′, 5′-cyclic monophosphate
(44) 8-(7-(4-Methyl)coumarinyl)thio-guanosine-3′, 5′-cyclic monophosphate
(45) 8-Methylacetylthioguanosine-3′, 5′-cyclic monophosphate
(46) 8-(5-(1-Phenyl)tetrazolyl)thioguanosine-3′, 5′-cyclic monophosphate
(47) 8-(2-Phenylethyl)thioguanosine-3′, 5′-cyclic monophosphate
(48) 8-(2-(4-Phenyl)imidazolyl)thioguanosine-3′, 5′-cyclic monophosphate
(49) 8-(2-Thiophenyl)thioguanosine-3′, 5′-cyclic monophosphate
(50) 8-(1, 1, 2-Trifluoro-1-butenthio)guanosine-3′, 5′-cyclic monophosphate
(51) 8-Amidopropylthioguanosine-3′, 5′-cyclic monophosphate
(52) 8-Amidoethylthioguanosine-3′, 5′-cyclic monophosphate
(53) 8-Amidobutylthioguanosine-3′, 5′-cyclic monophosphate
(54) 8-Acetamidoethylthioguanosine-3′, 5′-cyclic monophosphate
(55) 8-(2-Benzothiazolyl)thioguanosine-3′, 5′-cyclic monophosphate
(56) 8-(2-Boronatebenzylthio)guanosine-3′, 5′-cyclic monophosphate
(57) 8-(4-Boronatebutylthio)guanosine-3′, 5′-cyclic monophosphate
(58) 8-(4-Boronatebenzylthio)guanosine-3′, 5′-cyclic monophosphate
(59) 8-(3-Boronatebenzylthio)guanosine-3′, 5′-cyclic monophosphate
(60) 8-Azidomethylamidoethylthio-guanosine-3′, 5′-cyclic monophosphate
(61) 8-(3-Boronatephenyl)amidobutylthio-guanosine-3′, 5′-cyclic monophosphate
(62) 8-Benzylamidobutylthioguanosine-3′, 5′-cyclic monophosphate
(63) 8-Benzamidoethylthioguanosine-3′, 5′-cyclic monophosphate
(64) 8-(3-Boronatephenyl)amidomethyl-thioguanosine-3′, 5′-cyclic monophosphate
(65) 8-Benzylamidomethylthio-guanosine-3′, 5′-cyclic monophosphate
(66) 8-(3-Boronatephenyl)amidoethylthio-guanosine-3′, 5′-cyclic monophosphate
(67) 8-(3-Boronatephenyl)amidopropylthioguanosine-3′, 5′-cyclic monophosphate
(68) 8-Carboxypropylthioguanosine-3′, 5′-cyclic monophosphate
(69) 8-Carboxybutylthioguanosine-3′, 5′-cyclic monophosphate
(70) 8-(2, 6-Dichlorophenoxypropyl)thio-guanosine-3′, 5′-cyclic monophosphate
(71) 8-(4-Dimethylaminophenyl)amido-methylthioguanosine-3′, 5′-cyclic monophosphate
(72) 8-(4-Dimethylaminophenyl)amido-butylthioguanosine-3′, 5′-cyclic monophosphate
(73) 8-Ethylbutyrylthioguanosine-3′, 5′-cyclic monophosphate
(74) 8-Methylpropionylthioguanosine-3′, 5′-cyclic monophosphate
(75) 8-Methylvalerianylthioguanosine-3′, 5′-cyclic monophosphate
(76) 8-Methoxyethylamidobutylthio-guanosine-3′, 5′-cyclic monophosphate
(77) 8-Methoxyethylamidomethylthio-guanosine-3′, 5′-cyclic monophosphate
(78) 8-Methoxyethylamidoethylthio-guanosine-3′, 5′-cyclic monophosphate
(79) 8-Phenylamidomethylthio-guanosine-3′, 5′-cyclic monophosphate
(80) 8-Phenylpropylthioguanosine-3′, 5′-cyclic monophosphate
(81) 8-(3-Butynylthio)guanosine-3′, 5′-cyclic monophosphate
(82) 8-(4-Acetamidophenylthio)guanosine-3′, 5′-cyclic monophosphate
(83) 8-(4-Chlorophenylsulfonyl)guanosine-3′, 5′-cyclic monophosphate
(84) 8-(4-Chlorophenylsulfoxide)-guanosine-3′, 5′-cyclic monophosphate
(85) 8-((2-Ethoxyethyl)-4-thiophenylthio)guanosine-3′, 5′-cyclic monophosphate
(86) 8-(4-Thiophenyl-4″-thiophenylthio)guanosine-3′, 5′-cyclic monophosphate
(87) 8-(2-Azidoethylthio)guanosine-3′, 5′-cyclic monophosphate
(88) 8-(3-Aminopropyl)-(pentaethoxy)-methylamidomethylthio-guanosine-3′, 5′-cyclic monophosphate
(89) 8-(2-Aminoethyl)-(octaethoxy)-amidomethylthioguanosine-3′, 5′-cyclic monophosphate
(90) 8-(2-Bromoethyl)-(pentaethoxy)-(4-thiophenylthio)guanosine-3′, 5′-cyclic monophosphate
(91) 8-(4-(Propargyloxy-(hexaethoxy)-methyl)-[1, 2, 3]-triazole-1-yl)methylamidoethylthio guanosine-3′, 5′-cyclic monophosphate
(92) 8-(4-Carboxyphenylthio)guanosine-3′, 5′-cyclic monophosphate
(93) 8-(4-Hydroxyphenylsulfonyl)-guanosine-3′, 5′-cyclic monophosphate
(94) 8-(4-Isopropylphenylsulfonyl)-guanosine-3′, 5′-cyclic monophosphate
(95) 8-(4-Methylcarboxyphenylthio)-guanosine-3′, 5′-cyclic monophosphate
(96) 8-Methylsulfonylguanosine-3′, 5′-cyclic monophosphate
(97) 8-(1-Bromo-2-naphthyl)methylthioguanosine-3′, 5′-cyclic monophosphate
(98) 8-(2-(1-Benzyl-[1, 2, 3]-triazole-4-yl)-ethylthio)guanosine-3′, 5′-cyclic monophosphate
(99) 8-(3-Fluoro-5-methoxybenzylthio)guanosine-3′, 5′-cyclic monophosphate
(100) 8-Pentafluorobenzylthioguanosine-3′, 5′-cyclic monophosphate
(101) 8-Triphenyliminophosphoranyl-guanosine-3′, 5′-cyclic monophosphate
(102) 8-(4-Chlorophenyl)guanosine-3′, 5′-cyclic monophosphate
(103) 8-(4-Fluorophenyl)guanosine-3′, 5′-cyclic monophosphate
(104) 8-(2-Furyl)guanosine-3′, 5′-cyclic monophosphate
(105) 8-(4-Hydroxyphenyl)guanosine-3′, 5′-cyclic monophosphate
(106) 8-(4-Isopropylphenyl)guanosine-3′, 5′-cyclic monophosphate
(107) 8-Phenylguanosine-3′, 5′-cyclic monophosphate
(108) β-Phenyl-1, N2-etheno-8-thioguanosine-3′, 5′-cyclic monophosphate
(109) 8-(2-Aminophenylthio)-ß-phenyl-1, N2-ethenoguanosine-3′, 5′-cyclic monophosphate
(110) 8-Cyclohexylthioß-phenyl-1, N2-ethenoguanosine-3′, 5′-cyclic monophosphate
(111) 8-Cyclopentylthio-ß-phenyl-1, N2-ethenoguanosine-3′, 5′-cyclic monophosphate
(112) 8-(4-Methylphenylthio)-ß-phenyl-1, N2-ethenoguanosine-3′, 5′-cyclic monophosphate
(113) 8-(4-Methoxyphenylthio)-ß-phenyl-1, N2-ethenoguanosine-3′, 5′-cyclic monophosphate
(114) 8-(3-(2-Methyl)furanyl)thio-ß-phenyl-1, N2-ethenoguanosine-3′, 5′-cyclic monophosphate
(115) 8-(7-(4-Methyl)coumarinyl)thio-ß-phenyl-1, N2-ethenoguanosine-3′, 5′-cyclic monophosphate
(116) 8-(2-Naphthyl)thio-ß-phenyl-1, N2-ethenoguanosine-3′, 5′-cyclic monophosphate
(117) ß-Phenyl-1, N2-etheno-8-(2-thiophenyl)thioguanosine-3′, 5′-cyclic monophosphate
(118) ß-Phenyl-1, N2-etheno-8-(2-phenylethyl)thioguanosine-3′, 5′-cyclic monophosphate
(119) 8-Amidomethylthio-ß-phenyl-1, N2-ethenoguanosine-3′, 5′-cyclic monophosphate
(120) 8-Carboxymethylthio-ß-phenyl-1, N2-ethenoguanosine-3′, 5′-cyclic monophosphate
(121) 8-(4-Boronatephenylthio)-ß-phenyl-1, N2-ethenoguanosine-3′, 5′-cyclic monophosphate
(122) 8-Ethylthio-ß-phenyl-1, N2-ethenoguanosine-3′, 5′-cyclic monophosphate
(123) 8-(4-Fluorophenylthio)-ß-phenyl-1, N2-ethenoguanosine-3′, 5′-cyclic monophosphate
(124) 8-Methylthio-ß-phenyl-1, N2-ethenoguanosine-3′, 5′-cyclic monophosphate
(125) ß-Phenyl-1, N2-etheno-8-propylthio-guanosine-3′, 5′-cyclic monophosphate
(126) 8-Azidoethylthio-ß-phenyl-1, N2-ethenoguanosine-3′, 5′-cyclic monophosphate
(127) ß-Phenyl-1, N2-etheno-8-(4-trifluoromethylphenylthio)guanosine-3′, 5′-cyclic monophosphate
(128) 8-(4-Chlorophenylsulfonyl)-ß-phenyl-1, N2-ethenoguanosine-3′, 5′-cyclic monophosphate
(129) 8-(4-Isopropylphenylthio)-ß-phenyl-1, N2-ethenoguanosine-3′, 5′-cyclic monophosphate
(130) 8-(4-Isopropylphenylsulfonyl)-ß-phenyl-1, N2-ethenoguanosine-3′, 5′-cyclic monophosphate
(131) 8-(4-Chlorophenyl)-ß-phenyl-1, N2-ethenoguanosine-3′, 5′-cyclic monophosphate
(132) 8-(4-Hydroxyphenyl)-ß-phenyl-1, N2-ethenoguanosine-3′, 5′-cyclic monophosphate
(133) 8-(4-Isopropylphenyl)-ß-phenyl-1, N2-ethenoguanosine-3′, 5′-cyclic monophosphate
(134) 8-Bromo-(4-methoxy-ß-phenyl-1, N2-etheno)guanosine-3′, 5′-cyclic monophosphate
(135) 8-Bromo-(4-methyl-ß-phenyl-1, N2-etheno)guanosine-3′, 5′-cyclic monophosphate
(136) alpha-Benzoyl-beta-phenyl-1, N2-etheno-8-bromoguanosine-3′, 5′-cyclic monophosphate
(137) 8-Bromo-(4-chloro-ß-phenyl-1, N2-etheno)guanosine-3′, 5′-cyclic monophosphate (138) 8-Bromo-(3-nitro-ß-phenyl-1, N2-etheno)guanosine-3′, 5′-cyclic monophosphate
(139) 8-Bromo-(ß-tert.-butyl-1, N2-etheno)guanosine-3′, 5′-cyclic monophosphate (140) 8-Bromo-(2-methoxy-ß-phenyl-1, N2-etheno)guanosine-3′, 5′-cyclic monophosphate
(141) 8-Bromo-(3-methoxy-ß-phenyl-1, N2-etheno)guanosine-3′, 5′-cyclic monophosphate
(142) 8-Bromo-(2, 4-dimethoxy-ß-phenyl-1, N2-etheno)guanosine-3′, 5′-cyclic monophosphate
(143) 8-Bromo-(4-pyridinyl-1, N2-etheno)guanosine-3′, 5′-cyclic monophosphate
(144) 8-Bromo-(3-thiophen-yl-1, N2-etheno)guanosine-3′, 5′-cyclic monophosphate
(145) 8-Bromo-(4-fluoro-ß-phenyl-1, N2-etheno)guanosine-3′, 5′-cyclic monophosphate
(146) 8-Bromo-1, N2-ethenoguanosine-3′, 5′-cyclic monophosphate
(147) 8-Bromo-(3-hydroxy-ß-phenyl-1, N2-etheno)guanosine-3′, 5′-cyclic monophosphate
(148) 8-Bromo-(4-hydroxy-ß-phenyl-1, N2-etheno)guanosine-3′, 5′-cyclic monophosphate
(149) 8-Bromo-(ß-(2, 3-dihydro-1, 4-benzodioxin)-1, N2-etheno)guanosine-3′, 5′-cyclic monophosphate
(150) 8-Bromo-(4-methylsulfonamido-ß-phenyl-1, N2-etheno)guanosine-3′, 5′-cyclic monophosphate
(151) 8-Bromo-(4-cyano-β-phenyl-1, N2-etheno)guanosine-3′, 5′-cyclic monophosphate
(152) 8-Bromo-(α-phenyl-β-methyl-1, N2-etheno)guanosine-3′, 5′-cyclic monophosphate
(153) β-(4-Aminophenyl)-1, N2-etheno-8-bromoguanosine-3′, 5′-cyclic monophosphate
(154) 8-Bromo-(6-methoxy-2-naphthyl-1, N2-etheno)guanosine-3′, 5′-cyclic monophosphate
(155) 8-Bromo-(9-phenanthrenyl-1, N2-etheno)guanosine-3′, 5′-cyclic monophosphate
(156) 8-Bromo-(4-trifluoromethyl-β-phenyl-1, N2-etheno)guanosine-3′, 5′-cyclic monophosphate
(157) (4-Fluoro-ß-phenyl-1, N2-etheno)-8-methylthioguanosine-3′, 5′-cyclic monophosphate
(158) (4-Methoxy-ß-phenyl-1, N2-etheno)-8-methylthioguanosine-3′, 5′-cyclic monophosphate
(159) 1, N2-Etheno-8-(2-phenylethyl)thioguanosine-3′, 5′-cyclic monophosphate
(160) (4-Methoxy-ß-phenyl-1, N2-etheno)-8-propylthioguanosine-3′, 5′-cyclic monophosphate
(161) β-1, N2-Acetyl-8-bromoguanosine-3′, 5′-cyclic monophosphate
(162) 8-Bromo-δ-1, N2-butyrylguanosine-3′, 5′-cyclic monophosphate
(163) 8-Bromo-1-(3-carboxypropyl)guanosine-3′, 5′-cyclic monophosphate
(164) 1-[Aminomethyl-(pentaethoxy)-propylamidopropyl]-8-bromoguanosine-3′, 5′-cyclic monophosphate
(165) 1-Benzyl-8-bromoguanosine-3′, 5′-cyclic monophosphate
(166) 2′-O-(2-Azidoacetyl)-8-bromo-β-phenyl-1, N2-ethenoguanosine-3′, 5′-cyclic monophosphate
12. A compound according to claim 1 or a monomeric compound of formula (III) according to claim 11 for use in the treatment of a disease or disorder, preferably a disease or disorder selected from the group consisting of cancer, cardiovascular disease or disorder, or autoimmune disease or disorder, or neurodegenerative disease or disorder.
13. A compound according to claim 1 or a monomeric compound of formula (III) for use in the treatment of at least one of:
a) neurodegenerative diseases associated with insufficient synaptic function and learning and memory defects.
b) neuromuscular junction defects including motor neuron diseases (including Amyotrophic lateral sclerosis (ALS), Primary lateral sclerosis), also forms caused by certain infectious diseases (including paralytic Poliomyelitis)
c) cancer, including the initiation of cancer cell apoptosis and the prevention of metastasis
d) cardiovascular diseases, including hypertension, cardiac hypertrophy, angina pectoris, ischemia and stroke
e) parasitic diseases caused by trypanosomes, including Malaria, Chagas, sleeping sickness
f) borelliosis (lyme disease)
g) pulmonary diseases and conditions, such as pulmonary fibrosis and pulmonary hypertension
h) osteoporosis
i) Autoimmune diseases associated with an excessive proliferation of B- and T-cells, including multiple sclerosis, Crohn's disease, Hashimoto's disease, juvenile arthritis, myocarditis, and rheuma.
14. Method of compound according to claim 1 or of a monomeric compound of formula (III) as research tool compound, preferably as research tool compound in regard of a disease or disorder, preferably a disease or disorder selected from the group consisting of cancer, cardiovascular disease or disorder, or autoimmune disease or disorder, or neurodegenerative disease or disorder.
US16/329,031 2016-08-31 2017-08-31 New polymer linked multimers of guanosine-3', 5'-cyclic monophosphates Abandoned US20210317156A1 (en)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
EP16186700 2016-08-31
EP16186700.7 2016-08-31
PCT/EP2017/071859 WO2018041942A1 (en) 2016-08-31 2017-08-31 New polymer linked multimers of guanosine-3', 5'-cyclic monophosphates

Related Parent Applications (1)

Application Number Title Priority Date Filing Date
PCT/EP2017/071859 A-371-Of-International WO2018041942A1 (en) 2016-08-31 2017-08-31 New polymer linked multimers of guanosine-3', 5'-cyclic monophosphates

Related Child Applications (1)

Application Number Title Priority Date Filing Date
US17/901,771 Continuation US20230242568A1 (en) 2016-08-31 2022-09-01 Polymer linked multimers of guanosine-3', 5'-cyclic monophosphates

Publications (1)

Publication Number Publication Date
US20210317156A1 true US20210317156A1 (en) 2021-10-14

Family

ID=56990226

Family Applications (2)

Application Number Title Priority Date Filing Date
US16/329,031 Abandoned US20210317156A1 (en) 2016-08-31 2017-08-31 New polymer linked multimers of guanosine-3', 5'-cyclic monophosphates
US17/901,771 Pending US20230242568A1 (en) 2016-08-31 2022-09-01 Polymer linked multimers of guanosine-3', 5'-cyclic monophosphates

Family Applications After (1)

Application Number Title Priority Date Filing Date
US17/901,771 Pending US20230242568A1 (en) 2016-08-31 2022-09-01 Polymer linked multimers of guanosine-3', 5'-cyclic monophosphates

Country Status (4)

Country Link
US (2) US20210317156A1 (en)
EP (1) EP3507295A1 (en)
JP (2) JP7298048B2 (en)
WO (1) WO2018041942A1 (en)

Family Cites Families (6)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5625056A (en) 1992-05-26 1997-04-29 Biolog Life Science Institute Derivatives of cyclic guanosine-3',5'-monophosphorothioate
WO1999025384A2 (en) 1997-11-17 1999-05-27 University Of Miami Multimeric tethered ligands and their use in receptor-ligand interactions
WO2008112286A2 (en) * 2007-03-12 2008-09-18 Nektar Therapeutics De novo synthesis of conjugates
US9487553B2 (en) 2011-03-29 2016-11-08 Biolog Life Science Institute Forschungslabor Und Biochemica-Vertrieb Gmbh Boranophosphate analogues of cyclic nucleotides
CN110478495A (en) * 2014-06-30 2019-11-22 塔弗达治疗有限公司 Target conjugate and its particle and preparation
CN107567335B (en) * 2015-01-23 2021-10-29 戴纳瓦克斯技术公司 Branched and linear chimeric compounds, polynucleotides, their use and methods of preparation

Also Published As

Publication number Publication date
JP2019526576A (en) 2019-09-19
JP2023102288A (en) 2023-07-24
JP7298048B2 (en) 2023-06-27
EP3507295A1 (en) 2019-07-10
WO2018041942A1 (en) 2018-03-08
US20230242568A1 (en) 2023-08-03
WO2018041942A9 (en) 2019-01-17

Similar Documents

Publication Publication Date Title
US20200224258A1 (en) Bis-biotinylation tags
Jiang et al. ML265: A potent PKM2 activator induces tetramerization and reduces tumor formation and size in a mouse xenograft model
CN110078788B (en) Dolastatin derivatives containing unnatural amino acid linkages
US20170152287A1 (en) Methods and compositions for site-specific labeling of peptides and proteins
Farzan et al. Automated solid-phase click synthesis of oligonucleotide conjugates: From small molecules to diverse N-acetylgalactosamine clusters
JP2001509828A (en) Bioconjugation of macromolecules
KR20050062588A (en) Substrates for o6-alkylguanine-dna alkyltransferase
US20220402964A1 (en) New equatorially modified polymer linked multimers of guansine-3&#39;, 5&#39;-cyclic monophosphates
WO2007094135A1 (en) Oligonucleotide derivative and use thereof
US10711037B2 (en) Chemical and biochemical adducts as biomarkers for organophosphate exposure
Wang et al. Advanced aqueous-phase phosphoramidation reactions for effectively synthesizing peptide–oligonucleotide conjugates trafficked into a human cell line
US20230242568A1 (en) Polymer linked multimers of guanosine-3&#39;, 5&#39;-cyclic monophosphates
US10557852B2 (en) Fluorescent molecular sensor for targeting changes in protein surfaces, and methods of use thereof
Coelho et al. Synthesis of Bisubstrate Analogues for RNA Methylation Studies using two Transition‐Metal‐Catalyzed Reactions
Lee et al. Influencing uptake and localization of aminoglycoside-functionalized peptoids
Jung et al. Oriented immobilization of antibodies by a self-assembled monolayer of 2-(biotinamido) ethanethiol for immunoarray preparation
US20150018579A1 (en) Synthesis of high purity dmt-c3-disulfide phosphoramidite
US11119095B2 (en) Method for measuring tyrosine phosphatase and tyrosine kinase activity
US9856285B2 (en) Reagents for universal site-specific labeling and modifications of nucleic acids
US20160152976A1 (en) Compound administration precursor and medicament carrier preparation
WO2023088493A1 (en) Furo-pyridone compound and use thereof
US20230235328A1 (en) Novel morpholino oligonucleotide derivatives
Tran et al. Dual-Function Probes to Tag, Isolate and Identify Nucleobase-Binding Proteins
Läppchen Synthesis of GTP analogues and evaluation of their effect on the antibiotic target FtsZ and its eukaryotic homologue tubulin
Shome Synthetic and Biochemical Exploration of the Degradation and Utilization of Thiamin Analogs and Preliminary Studies on Methanopterin methyltransferase

Legal Events

Date Code Title Description
AS Assignment

Owner name: MIRECA MEDICINES GMBH, GERMANY

Free format text: ASSIGNMENT OF ASSIGNORS INTEREST;ASSIGNORS:GENIESER, HANS-GOTTFRIED;SCHWEDE, FRANK;RENTSCH, ANDREAS;AND OTHERS;SIGNING DATES FROM 20190106 TO 20190130;REEL/FRAME:048463/0713

STPP Information on status: patent application and granting procedure in general

Free format text: NON FINAL ACTION MAILED

STPP Information on status: patent application and granting procedure in general

Free format text: RESPONSE TO NON-FINAL OFFICE ACTION ENTERED AND FORWARDED TO EXAMINER

AS Assignment

Owner name: GRAYBUG VISION, INC., CALIFORNIA

Free format text: ASSIGNMENT OF ASSIGNORS INTEREST;ASSIGNOR:MIRECA MEDICINES GMBH;REEL/FRAME:058904/0034

Effective date: 20211217

STPP Information on status: patent application and granting procedure in general

Free format text: NON FINAL ACTION MAILED

STCB Information on status: application discontinuation

Free format text: ABANDONED -- FAILURE TO RESPOND TO AN OFFICE ACTION