US20200331891A9 - 2,4-bis(nitrogen-containing group)-substituted pyrimidine compound, preparation method and use thereof - Google Patents
2,4-bis(nitrogen-containing group)-substituted pyrimidine compound, preparation method and use thereof Download PDFInfo
- Publication number
- US20200331891A9 US20200331891A9 US15/755,572 US201615755572A US2020331891A9 US 20200331891 A9 US20200331891 A9 US 20200331891A9 US 201615755572 A US201615755572 A US 201615755572A US 2020331891 A9 US2020331891 A9 US 2020331891A9
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- US
- United States
- Prior art keywords
- amino
- alkyl
- substituted
- group
- methyl
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Granted
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- 238000002360 preparation method Methods 0.000 title claims abstract description 191
- -1 pyrimidine compound Chemical class 0.000 title claims abstract description 46
- QJGQUHMNIGDVPM-UHFFFAOYSA-N nitrogen group Chemical group [N] QJGQUHMNIGDVPM-UHFFFAOYSA-N 0.000 title claims description 19
- 150000001875 compounds Chemical class 0.000 claims abstract description 173
- 206010028980 Neoplasm Diseases 0.000 claims abstract description 54
- 230000035772 mutation Effects 0.000 claims abstract description 41
- 150000003839 salts Chemical class 0.000 claims abstract description 28
- 208000002154 non-small cell lung carcinoma Diseases 0.000 claims abstract description 20
- 208000029729 tumor suppressor gene on chromosome 11 Diseases 0.000 claims abstract description 20
- 239000003814 drug Substances 0.000 claims abstract description 10
- 238000006243 chemical reaction Methods 0.000 claims description 122
- 238000000034 method Methods 0.000 claims description 104
- 125000004169 (C1-C6) alkyl group Chemical group 0.000 claims description 49
- 125000004178 (C1-C4) alkyl group Chemical class 0.000 claims description 43
- 229910052739 hydrogen Inorganic materials 0.000 claims description 41
- 102200048955 rs121434569 Human genes 0.000 claims description 38
- 229910052757 nitrogen Inorganic materials 0.000 claims description 32
- 125000005913 (C3-C6) cycloalkyl group Chemical group 0.000 claims description 23
- 125000004191 (C1-C6) alkoxy group Chemical class 0.000 claims description 17
- 229910052736 halogen Inorganic materials 0.000 claims description 15
- 150000002367 halogens Chemical class 0.000 claims description 15
- VHUUQVKOLVNVRT-UHFFFAOYSA-N Ammonium hydroxide Chemical compound [NH4+].[OH-] VHUUQVKOLVNVRT-UHFFFAOYSA-N 0.000 claims description 10
- 239000000908 ammonium hydroxide Substances 0.000 claims description 10
- 125000002924 primary amino group Chemical class [H]N([H])* 0.000 claims description 10
- 125000004093 cyano group Chemical group *C#N 0.000 claims description 9
- 125000003368 amide group Chemical class 0.000 claims description 8
- 201000011510 cancer Diseases 0.000 claims description 8
- 125000002496 methyl group Chemical class [H]C([H])([H])* 0.000 claims description 8
- 150000003457 sulfones Chemical class 0.000 claims description 8
- 229910052799 carbon Inorganic materials 0.000 claims description 7
- 229910052760 oxygen Inorganic materials 0.000 claims description 7
- 229910052717 sulfur Inorganic materials 0.000 claims description 7
- 125000000229 (C1-C4)alkoxy group Chemical class 0.000 claims description 6
- 125000002252 acyl group Chemical class 0.000 claims description 6
- 125000005842 heteroatom Chemical group 0.000 claims description 6
- 125000000449 nitro group Chemical group [O-][N+](*)=O 0.000 claims description 6
- 125000000882 C2-C6 alkenyl group Chemical group 0.000 claims description 5
- 230000002378 acidificating effect Effects 0.000 claims description 5
- 230000002265 prevention Effects 0.000 claims description 5
- 125000006700 (C1-C6) alkylthio group Chemical class 0.000 claims description 4
- 125000003178 carboxy group Chemical class [H]OC(*)=O 0.000 claims description 4
- 150000002148 esters Chemical class 0.000 claims description 4
- 125000000956 methoxy group Chemical group [H]C([H])([H])O* 0.000 claims description 4
- 239000008194 pharmaceutical composition Substances 0.000 claims description 4
- 150000003462 sulfoxides Chemical class 0.000 claims description 4
- VEXZGXHMUGYJMC-UHFFFAOYSA-M Chloride anion Chemical compound [Cl-] VEXZGXHMUGYJMC-UHFFFAOYSA-M 0.000 claims description 3
- 229910002651 NO3 Inorganic materials 0.000 claims description 3
- NHNBFGGVMKEFGY-UHFFFAOYSA-N Nitrate Chemical compound [O-][N+]([O-])=O NHNBFGGVMKEFGY-UHFFFAOYSA-N 0.000 claims description 3
- NINIDFKCEFEMDL-UHFFFAOYSA-N Sulfur Chemical compound [S] NINIDFKCEFEMDL-UHFFFAOYSA-N 0.000 claims description 3
- 125000003277 amino group Chemical group 0.000 claims description 3
- 125000001246 bromo group Chemical group Br* 0.000 claims description 3
- 125000001495 ethyl group Chemical group [H]C([H])([H])C([H])([H])* 0.000 claims description 3
- 239000011593 sulfur Substances 0.000 claims description 3
- 125000003601 C2-C6 alkynyl group Chemical group 0.000 claims description 2
- 206010071975 EGFR gene mutation Diseases 0.000 claims description 2
- 125000001797 benzyl group Chemical class [H]C1=C([H])C([H])=C(C([H])=C1[H])C([H])([H])* 0.000 claims description 2
- 229910052794 bromium Inorganic materials 0.000 claims description 2
- 229910052801 chlorine Inorganic materials 0.000 claims description 2
- 125000002147 dimethylamino group Chemical group [H]C([H])([H])N(*)C([H])([H])[H] 0.000 claims description 2
- 239000003937 drug carrier Substances 0.000 claims description 2
- 229910052731 fluorine Inorganic materials 0.000 claims description 2
- 125000004170 methylsulfonyl group Chemical class [H]C([H])([H])S(*)(=O)=O 0.000 claims description 2
- 230000001590 oxidative effect Effects 0.000 claims description 2
- 125000001997 phenyl group Chemical class [H]C1=C([H])C([H])=C(*)C([H])=C1[H] 0.000 claims description 2
- 125000002023 trifluoromethyl group Chemical group FC(F)(F)* 0.000 claims description 2
- 102000001301 EGF receptor Human genes 0.000 abstract description 44
- 108060006698 EGF receptor Proteins 0.000 abstract description 43
- 230000000694 effects Effects 0.000 abstract description 21
- 229940079593 drug Drugs 0.000 abstract description 8
- 239000002246 antineoplastic agent Substances 0.000 abstract 1
- 229940041181 antineoplastic drug Drugs 0.000 abstract 1
- 230000001629 suppression Effects 0.000 abstract 1
- 239000000543 intermediate Substances 0.000 description 295
- YMWUJEATGCHHMB-UHFFFAOYSA-N Dichloromethane Chemical compound ClCCl YMWUJEATGCHHMB-UHFFFAOYSA-N 0.000 description 231
- 238000004895 liquid chromatography mass spectrometry Methods 0.000 description 182
- OKKJLVBELUTLKV-UHFFFAOYSA-N Methanol Chemical compound OC OKKJLVBELUTLKV-UHFFFAOYSA-N 0.000 description 116
- 239000007787 solid Substances 0.000 description 116
- 238000010189 synthetic method Methods 0.000 description 112
- IAZDPXIOMUYVGZ-WFGJKAKNSA-N Dimethyl sulfoxide Chemical compound [2H]C([2H])([2H])S(=O)C([2H])([2H])[2H] IAZDPXIOMUYVGZ-WFGJKAKNSA-N 0.000 description 106
- XEKOWRVHYACXOJ-UHFFFAOYSA-N Ethyl acetate Chemical compound CCOC(C)=O XEKOWRVHYACXOJ-UHFFFAOYSA-N 0.000 description 105
- XLYOFNOQVPJJNP-UHFFFAOYSA-N water Substances O XLYOFNOQVPJJNP-UHFFFAOYSA-N 0.000 description 84
- 238000012512 characterization method Methods 0.000 description 72
- 238000005160 1H NMR spectroscopy Methods 0.000 description 55
- 239000000203 mixture Substances 0.000 description 50
- LFQSCWFLJHTTHZ-UHFFFAOYSA-N Ethanol Chemical compound CCO LFQSCWFLJHTTHZ-UHFFFAOYSA-N 0.000 description 42
- ZMANZCXQSJIPKH-UHFFFAOYSA-N Triethylamine Chemical compound CCN(CC)CC ZMANZCXQSJIPKH-UHFFFAOYSA-N 0.000 description 42
- AAQQTVTUCNBWAP-UHFFFAOYSA-N 4-indol-1-yl-5-(trifluoromethyl)pyrimidin-2-amine Chemical compound N1(C=CC2=CC=CC=C12)C1=NC(=NC=C1C(F)(F)F)N AAQQTVTUCNBWAP-UHFFFAOYSA-N 0.000 description 39
- IAZDPXIOMUYVGZ-UHFFFAOYSA-N Dimethylsulphoxide Chemical compound CS(C)=O IAZDPXIOMUYVGZ-UHFFFAOYSA-N 0.000 description 37
- RTZKZFJDLAIYFH-UHFFFAOYSA-N Diethyl ether Chemical compound CCOCC RTZKZFJDLAIYFH-UHFFFAOYSA-N 0.000 description 36
- WYURNTSHIVDZCO-UHFFFAOYSA-N Tetrahydrofuran Chemical compound C1CCOC1 WYURNTSHIVDZCO-UHFFFAOYSA-N 0.000 description 36
- PMZURENOXWZQFD-UHFFFAOYSA-L Sodium Sulfate Chemical compound [Na+].[Na+].[O-]S([O-])(=O)=O PMZURENOXWZQFD-UHFFFAOYSA-L 0.000 description 32
- 239000000243 solution Substances 0.000 description 31
- IJGRMHOSHXDMSA-UHFFFAOYSA-N Atomic nitrogen Chemical compound N#N IJGRMHOSHXDMSA-UHFFFAOYSA-N 0.000 description 30
- 238000003556 assay Methods 0.000 description 30
- 238000010898 silica gel chromatography Methods 0.000 description 30
- 239000012074 organic phase Substances 0.000 description 29
- YDRCFPIBCQQKSF-UHFFFAOYSA-N 1-N-[2-(dimethylamino)ethyl]-4-N-[4-indol-1-yl-5-(trifluoromethyl)pyrimidin-2-yl]-5-methoxy-1-N-methylbenzene-1,2,4-triamine Chemical compound N1(C=CC2=CC=CC=C12)C1=NC(=NC=C1C(F)(F)F)NC=1C=C(C(=CC=1OC)N(C)CCN(C)C)N YDRCFPIBCQQKSF-UHFFFAOYSA-N 0.000 description 27
- 0 [1*]C1=CN=C(N([2*])C2=CC(N([3*])C)=C([5*])C=C2[4*])N=C1N1ccC2=C1C=CC=C2 Chemical compound [1*]C1=CN=C(N([2*])C2=CC(N([3*])C)=C([5*])C=C2[4*])N=C1N1ccC2=C1C=CC=C2 0.000 description 25
- UGXMFIQUOPDZKD-UHFFFAOYSA-N CC(C)=CCn1c2ccccc2[nH]c1=O Chemical compound CC(C)=CCn1c2ccccc2[nH]c1=O UGXMFIQUOPDZKD-UHFFFAOYSA-N 0.000 description 24
- HPALAKNZSZLMCH-UHFFFAOYSA-M sodium;chloride;hydrate Chemical class O.[Na+].[Cl-] HPALAKNZSZLMCH-UHFFFAOYSA-M 0.000 description 24
- JGFZNNIVVJXRND-UHFFFAOYSA-N N,N-Diisopropylethylamine (DIPEA) Chemical compound CCN(C(C)C)C(C)C JGFZNNIVVJXRND-UHFFFAOYSA-N 0.000 description 23
- WEVYAHXRMPXWCK-UHFFFAOYSA-N Acetonitrile Chemical compound CC#N WEVYAHXRMPXWCK-UHFFFAOYSA-N 0.000 description 22
- NLXLAEXVIDQMFP-UHFFFAOYSA-N Ammonia chloride Chemical compound [NH4+].[Cl-] NLXLAEXVIDQMFP-UHFFFAOYSA-N 0.000 description 22
- 210000004027 cell Anatomy 0.000 description 21
- VEXZGXHMUGYJMC-UHFFFAOYSA-N Hydrochloric acid Chemical compound Cl VEXZGXHMUGYJMC-UHFFFAOYSA-N 0.000 description 20
- CDBYLPFSWZWCQE-UHFFFAOYSA-L Sodium Carbonate Chemical compound [Na+].[Na+].[O-]C([O-])=O CDBYLPFSWZWCQE-UHFFFAOYSA-L 0.000 description 20
- NUKFMBBKJBAGAC-UHFFFAOYSA-N 1-[2-[5-amino-4-[2-(dimethylamino)ethyl-methylamino]-2-methoxyanilino]pyrimidin-4-yl]-5-fluoro-3-propan-2-ylbenzimidazol-2-one Chemical compound NC=1C(=CC(=C(C=1)NC1=NC=CC(=N1)N1C(N(C2=C1C=CC(=C2)F)C(C)C)=O)OC)N(C)CCN(C)C NUKFMBBKJBAGAC-UHFFFAOYSA-N 0.000 description 19
- 239000000047 product Substances 0.000 description 19
- 230000005764 inhibitory process Effects 0.000 description 18
- 239000003208 petroleum Substances 0.000 description 18
- YLQBMQCUIZJEEH-UHFFFAOYSA-N tetrahydrofuran Natural products C=1C=COC=1 YLQBMQCUIZJEEH-UHFFFAOYSA-N 0.000 description 18
- BURTVXBLIYXCQR-UHFFFAOYSA-N 5-chloro-1-(2-chloropyrimidin-4-yl)-3-methylbenzimidazol-2-one Chemical compound ClC1=CC2=C(N(C(N2C)=O)C2=NC(=NC=C2)Cl)C=C1 BURTVXBLIYXCQR-UHFFFAOYSA-N 0.000 description 17
- 230000002401 inhibitory effect Effects 0.000 description 17
- SIKJAQJRHWYJAI-UHFFFAOYSA-N Indole Chemical compound C1=CC=C2NC=CC2=C1 SIKJAQJRHWYJAI-UHFFFAOYSA-N 0.000 description 16
- 102200048928 rs121434568 Human genes 0.000 description 16
- FYSIGSQCZXQTIH-UHFFFAOYSA-N 4-fluoro-2-methoxy-5-nitroaniline Chemical compound COC1=CC(F)=C([N+]([O-])=O)C=C1N FYSIGSQCZXQTIH-UHFFFAOYSA-N 0.000 description 15
- ZMXDDKWLCZADIW-UHFFFAOYSA-N N,N-Dimethylformamide Chemical compound CN(C)C=O ZMXDDKWLCZADIW-UHFFFAOYSA-N 0.000 description 15
- YXFVVABEGXRONW-UHFFFAOYSA-N Toluene Chemical compound CC1=CC=CC=C1 YXFVVABEGXRONW-UHFFFAOYSA-N 0.000 description 15
- 239000003480 eluent Substances 0.000 description 15
- FJDQFPXHSGXQBY-UHFFFAOYSA-L caesium carbonate Chemical compound [Cs+].[Cs+].[O-]C([O-])=O FJDQFPXHSGXQBY-UHFFFAOYSA-L 0.000 description 14
- RLYNGYDVXRKEOO-XQHVRGAUSA-N (e)-but-2-enoic acid Chemical compound C\C=C\C(O)=O.C\C=C\C(O)=O RLYNGYDVXRKEOO-XQHVRGAUSA-N 0.000 description 12
- HEMHJVSKTPXQMS-UHFFFAOYSA-M Sodium hydroxide Chemical compound [OH-].[Na+] HEMHJVSKTPXQMS-UHFFFAOYSA-M 0.000 description 12
- 229910000024 caesium carbonate Inorganic materials 0.000 description 12
- 239000000706 filtrate Substances 0.000 description 12
- MPDDTAJMJCESGV-CTUHWIOQSA-M (3r,5r)-7-[2-(4-fluorophenyl)-5-[methyl-[(1r)-1-phenylethyl]carbamoyl]-4-propan-2-ylpyrazol-3-yl]-3,5-dihydroxyheptanoate Chemical compound C1([C@@H](C)N(C)C(=O)C2=NN(C(CC[C@@H](O)C[C@@H](O)CC([O-])=O)=C2C(C)C)C=2C=CC(F)=CC=2)=CC=CC=C1 MPDDTAJMJCESGV-CTUHWIOQSA-M 0.000 description 11
- XEEYBQQBJWHFJM-UHFFFAOYSA-N Iron Chemical compound [Fe] XEEYBQQBJWHFJM-UHFFFAOYSA-N 0.000 description 11
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- GFFNKMWITJLWKH-UHFFFAOYSA-N 1-(2-chloro-5-methoxypyrimidin-4-yl)indole Chemical compound ClC1=NC=C(C(=N1)N1C=CC2=CC=CC=C12)OC GFFNKMWITJLWKH-UHFFFAOYSA-N 0.000 description 10
- 238000003756 stirring Methods 0.000 description 10
- ODFFPRGJZRXNHZ-UHFFFAOYSA-N 5-fluoroindole Chemical compound FC1=CC=C2NC=CC2=C1 ODFFPRGJZRXNHZ-UHFFFAOYSA-N 0.000 description 9
- KFZMGEQAYNKOFK-UHFFFAOYSA-N Isopropanol Chemical compound CC(C)O KFZMGEQAYNKOFK-UHFFFAOYSA-N 0.000 description 9
- SECXISVLQFMRJM-UHFFFAOYSA-N N-Methylpyrrolidone Chemical compound CN1CCCC1=O SECXISVLQFMRJM-UHFFFAOYSA-N 0.000 description 9
- 235000019270 ammonium chloride Nutrition 0.000 description 9
- 229940121647 egfr inhibitor Drugs 0.000 description 9
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- 239000002904 solvent Substances 0.000 description 9
- 210000001519 tissue Anatomy 0.000 description 9
- UWPIJBRPRPTDTI-UHFFFAOYSA-N 4-chloro-5-(trifluoromethyl)pyrimidin-2-amine Chemical compound NC1=NC=C(C(F)(F)F)C(Cl)=N1 UWPIJBRPRPTDTI-UHFFFAOYSA-N 0.000 description 8
- 241001465754 Metazoa Species 0.000 description 8
- 230000003213 activating effect Effects 0.000 description 8
- DBGFGNCFYUNXLD-UHFFFAOYSA-N 4-chloropyrimidin-2-amine Chemical compound NC1=NC=CC(Cl)=N1 DBGFGNCFYUNXLD-UHFFFAOYSA-N 0.000 description 7
- DWAQDRSOVMLGRQ-UHFFFAOYSA-N 5-methoxyindole Chemical compound COC1=CC=C2NC=CC2=C1 DWAQDRSOVMLGRQ-UHFFFAOYSA-N 0.000 description 7
- ZISPMWTYPDYENI-UHFFFAOYSA-N N-[2-[2-(dimethylamino)ethyl-methylamino]-5-[[4-(5-fluoro-2-oxo-3-propan-2-ylbenzimidazol-1-yl)pyrimidin-2-yl]amino]-4-methoxyphenyl]prop-2-enamide Chemical compound CN(CCN(C1=C(C=C(C(=C1)OC)NC1=NC=CC(=N1)N1C(N(C2=C1C=CC(=C2)F)C(C)C)=O)NC(C=C)=O)C)C ZISPMWTYPDYENI-UHFFFAOYSA-N 0.000 description 7
- 239000012267 brine Substances 0.000 description 7
- 238000002474 experimental method Methods 0.000 description 7
- DUYJMQONPNNFPI-UHFFFAOYSA-N osimertinib Chemical compound COC1=CC(N(C)CCN(C)C)=C(NC(=O)C=C)C=C1NC1=NC=CC(C=2C3=CC=CC=C3N(C)C=2)=N1 DUYJMQONPNNFPI-UHFFFAOYSA-N 0.000 description 7
- 238000010992 reflux Methods 0.000 description 7
- NYZTVZGDIVOWGX-UHFFFAOYSA-N tert-butyl-(1H-indol-5-yloxy)-diphenylsilane Chemical compound [Si](C1=CC=CC=C1)(C1=CC=CC=C1)(C(C)(C)C)OC=1C=C2C=CNC2=CC=1 NYZTVZGDIVOWGX-UHFFFAOYSA-N 0.000 description 7
- DFOHHQRGDOQMKG-UHFFFAOYSA-N 4-chloro-2-methylsulfanylpyrimidine Chemical compound CSC1=NC=CC(Cl)=N1 DFOHHQRGDOQMKG-UHFFFAOYSA-N 0.000 description 6
- LHIUCVZCVMTRNG-UHFFFAOYSA-N 4-fluoro-2-methyl-5-nitroaniline Chemical compound CC1=CC(F)=C([N+]([O-])=O)C=C1N LHIUCVZCVMTRNG-UHFFFAOYSA-N 0.000 description 6
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- ZKHQWZAMYRWXGA-UHFFFAOYSA-N Adenosine triphosphate Natural products C1=NC=2C(N)=NC=NC=2N1C1OC(COP(O)(=O)OP(O)(=O)OP(O)(O)=O)C(O)C1O ZKHQWZAMYRWXGA-UHFFFAOYSA-N 0.000 description 6
- QDUNWVASWBJRGC-UHFFFAOYSA-N N-(4-fluoro-2-methoxy-5-nitrophenyl)-4-indol-1-ylpyrimidin-2-amine Chemical compound N1(C=CC2=C1C=CC=C2)C1=NC(NC2=C(C=C(C(=C2)N(=O)=O)F)OC)=NC=C1 QDUNWVASWBJRGC-UHFFFAOYSA-N 0.000 description 6
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- ULYGCRXKWLIMCQ-UHFFFAOYSA-N 4-(5-nitroindol-1-yl)pyrimidin-2-amine Chemical compound [N+](=O)([O-])C=1C=C2C=CN(C2=CC=1)C1=NC(=NC=C1)N ULYGCRXKWLIMCQ-UHFFFAOYSA-N 0.000 description 5
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- 239000002609 medium Substances 0.000 description 1
- 230000004060 metabolic process Effects 0.000 description 1
- 230000009401 metastasis Effects 0.000 description 1
- 229930182817 methionine Natural products 0.000 description 1
- 125000006533 methyl amino methyl group Chemical group [H]N(C([H])([H])[H])C([H])([H])* 0.000 description 1
- 125000006431 methyl cyclopropyl group Chemical group 0.000 description 1
- 239000011259 mixed solution Substances 0.000 description 1
- 125000002950 monocyclic group Chemical group 0.000 description 1
- LNOPIUAQISRISI-UHFFFAOYSA-N n'-hydroxy-2-propan-2-ylsulfonylethanimidamide Chemical compound CC(C)S(=O)(=O)CC(N)=NO LNOPIUAQISRISI-UHFFFAOYSA-N 0.000 description 1
- FDMQDKQUTRLUBU-UHFFFAOYSA-N n-[3-[2-[4-(4-methylpiperazin-1-yl)anilino]thieno[3,2-d]pyrimidin-4-yl]oxyphenyl]prop-2-enamide Chemical compound C1CN(C)CCN1C(C=C1)=CC=C1NC1=NC(OC=2C=C(NC(=O)C=C)C=CC=2)=C(SC=C2)C2=N1 FDMQDKQUTRLUBU-UHFFFAOYSA-N 0.000 description 1
- 125000004108 n-butyl group Chemical group [H]C([H])([H])C([H])([H])C([H])([H])C([H])([H])* 0.000 description 1
- WWXPJKGWWPWBTB-UHFFFAOYSA-N n-methyl-2-morpholin-4-ylethanamine Chemical compound CNCCN1CCOCC1 WWXPJKGWWPWBTB-UHFFFAOYSA-N 0.000 description 1
- KCAUHAHOMIRXAN-UHFFFAOYSA-N n-methyl-2-piperidin-1-ylethanamine Chemical compound CNCCN1CCCCC1 KCAUHAHOMIRXAN-UHFFFAOYSA-N 0.000 description 1
- 229950008835 neratinib Drugs 0.000 description 1
- ZNHPZUKZSNBOSQ-BQYQJAHWSA-N neratinib Chemical compound C=12C=C(NC\C=C\CN(C)C)C(OCC)=CC2=NC=C(C#N)C=1NC(C=C1Cl)=CC=C1OCC1=CC=CC=N1 ZNHPZUKZSNBOSQ-BQYQJAHWSA-N 0.000 description 1
- 238000006386 neutralization reaction Methods 0.000 description 1
- 229910017604 nitric acid Inorganic materials 0.000 description 1
- 125000004433 nitrogen atom Chemical group N* 0.000 description 1
- QIQXTHQIDYTFRH-UHFFFAOYSA-N octadecanoic acid Chemical compound CCCCCCCCCCCCCCCCCC(O)=O QIQXTHQIDYTFRH-UHFFFAOYSA-N 0.000 description 1
- OQCDKBAXFALNLD-UHFFFAOYSA-N octadecanoic acid Natural products CCCCCCCC(C)CCCCCCCCC(O)=O OQCDKBAXFALNLD-UHFFFAOYSA-N 0.000 description 1
- 235000005985 organic acids Nutrition 0.000 description 1
- 235000006408 oxalic acid Nutrition 0.000 description 1
- 239000001301 oxygen Substances 0.000 description 1
- WLJNZVDCPSBLRP-UHFFFAOYSA-N pamoic acid Chemical compound C1=CC=C2C(CC=3C4=CC=CC=C4C=C(C=3O)C(=O)O)=C(O)C(C(O)=O)=CC2=C1 WLJNZVDCPSBLRP-UHFFFAOYSA-N 0.000 description 1
- FJKROLUGYXJWQN-UHFFFAOYSA-N papa-hydroxy-benzoic acid Natural products OC(=O)C1=CC=C(O)C=C1 FJKROLUGYXJWQN-UHFFFAOYSA-N 0.000 description 1
- 230000037361 pathway Effects 0.000 description 1
- MINRDQDGBLQBGD-UHFFFAOYSA-N pent-2-ynoic acid Chemical compound CCC#CC(O)=O MINRDQDGBLQBGD-UHFFFAOYSA-N 0.000 description 1
- 125000001147 pentyl group Chemical group C(CCCC)* 0.000 description 1
- 239000000137 peptide hydrolase inhibitor Substances 0.000 description 1
- 230000003285 pharmacodynamic effect Effects 0.000 description 1
- 229910052698 phosphorus Inorganic materials 0.000 description 1
- 230000035790 physiological processes and functions Effects 0.000 description 1
- 230000036470 plasma concentration Effects 0.000 description 1
- 229920000768 polyamine Polymers 0.000 description 1
- 229920002981 polyvinylidene fluoride Polymers 0.000 description 1
- 239000004323 potassium nitrate Substances 0.000 description 1
- 235000010333 potassium nitrate Nutrition 0.000 description 1
- LPNYRYFBWFDTMA-UHFFFAOYSA-N potassium tert-butoxide Chemical compound [K+].CC(C)(C)[O-] LPNYRYFBWFDTMA-UHFFFAOYSA-N 0.000 description 1
- 150000003141 primary amines Chemical class 0.000 description 1
- MFDFERRIHVXMIY-UHFFFAOYSA-N procaine Chemical compound CCN(CC)CCOC(=O)C1=CC=C(N)C=C1 MFDFERRIHVXMIY-UHFFFAOYSA-N 0.000 description 1
- 229960004919 procaine Drugs 0.000 description 1
- 230000008569 process Effects 0.000 description 1
- 230000035755 proliferation Effects 0.000 description 1
- 235000019260 propionic acid Nutrition 0.000 description 1
- 125000001436 propyl group Chemical group [H]C([*])([H])C([H])([H])C([H])([H])[H] 0.000 description 1
- UMJSCPRVCHMLSP-UHFFFAOYSA-N pyridine Natural products COC1=CC=CN=C1 UMJSCPRVCHMLSP-UHFFFAOYSA-N 0.000 description 1
- IUVKMZGDUIUOCP-BTNSXGMBSA-N quinbolone Chemical compound O([C@H]1CC[C@H]2[C@H]3[C@@H]([C@]4(C=CC(=O)C=C4CC3)C)CC[C@@]21C)C1=CCCC1 IUVKMZGDUIUOCP-BTNSXGMBSA-N 0.000 description 1
- 238000010814 radioimmunoprecipitation assay Methods 0.000 description 1
- 102000027426 receptor tyrosine kinases Human genes 0.000 description 1
- 108091008598 receptor tyrosine kinases Proteins 0.000 description 1
- 102000005962 receptors Human genes 0.000 description 1
- 108020003175 receptors Proteins 0.000 description 1
- 230000009467 reduction Effects 0.000 description 1
- 238000011160 research Methods 0.000 description 1
- 239000011347 resin Substances 0.000 description 1
- 229920005989 resin Polymers 0.000 description 1
- 230000004044 response Effects 0.000 description 1
- 238000007363 ring formation reaction Methods 0.000 description 1
- 238000002390 rotary evaporation Methods 0.000 description 1
- 229960004889 salicylic acid Drugs 0.000 description 1
- 150000003335 secondary amines Chemical class 0.000 description 1
- 239000012679 serum free medium Substances 0.000 description 1
- 239000011734 sodium Substances 0.000 description 1
- 229910052708 sodium Inorganic materials 0.000 description 1
- 229910000030 sodium bicarbonate Inorganic materials 0.000 description 1
- 235000017557 sodium bicarbonate Nutrition 0.000 description 1
- 238000002415 sodium dodecyl sulfate polyacrylamide gel electrophoresis Methods 0.000 description 1
- 159000000000 sodium salts Chemical class 0.000 description 1
- 229910052938 sodium sulfate Inorganic materials 0.000 description 1
- 235000011152 sodium sulphate Nutrition 0.000 description 1
- 235000010265 sodium sulphite Nutrition 0.000 description 1
- 238000010561 standard procedure Methods 0.000 description 1
- 239000008117 stearic acid Substances 0.000 description 1
- 238000003860 storage Methods 0.000 description 1
- 238000007920 subcutaneous administration Methods 0.000 description 1
- 239000000126 substance Substances 0.000 description 1
- 125000001424 substituent group Chemical group 0.000 description 1
- 238000006467 substitution reaction Methods 0.000 description 1
- 239000006228 supernatant Substances 0.000 description 1
- 239000011975 tartaric acid Substances 0.000 description 1
- 235000002906 tartaric acid Nutrition 0.000 description 1
- 125000000999 tert-butyl group Chemical group [H]C([H])([H])C(*)(C([H])([H])[H])C([H])([H])[H] 0.000 description 1
- IOGXOCVLYRDXLW-UHFFFAOYSA-N tert-butyl nitrite Chemical compound CC(C)(C)ON=O IOGXOCVLYRDXLW-UHFFFAOYSA-N 0.000 description 1
- 239000012414 tert-butyl nitrite Substances 0.000 description 1
- WIRZFAJKXJHZGW-UHFFFAOYSA-N tert-butyl-[2-(1H-indol-5-yloxy)ethoxy]-diphenylsilane Chemical compound [Si](C1=CC=CC=C1)(C1=CC=CC=C1)(C(C)(C)C)OCCOC=1C=C2C=CNC2=CC=1 WIRZFAJKXJHZGW-UHFFFAOYSA-N 0.000 description 1
- HVXKQKFEHMGHSL-QKDCVEJESA-N tesevatinib Chemical compound N1=CN=C2C=C(OC[C@@H]3C[C@@H]4CN(C)C[C@@H]4C3)C(OC)=CC2=C1NC1=CC=C(Cl)C(Cl)=C1F HVXKQKFEHMGHSL-QKDCVEJESA-N 0.000 description 1
- 229950003046 tesevatinib Drugs 0.000 description 1
- FPGGTKZVZWFYPV-UHFFFAOYSA-M tetrabutylammonium fluoride Chemical compound [F-].CCCC[N+](CCCC)(CCCC)CCCC FPGGTKZVZWFYPV-UHFFFAOYSA-M 0.000 description 1
- 229960004559 theobromine Drugs 0.000 description 1
- 150000003587 threonine derivatives Chemical class 0.000 description 1
- 125000000341 threoninyl group Chemical group [H]OC([H])(C([H])([H])[H])C([H])(N([H])[H])C(*)=O 0.000 description 1
- JOXIMZWYDAKGHI-UHFFFAOYSA-N toluene-4-sulfonic acid Chemical compound CC1=CC=C(S(O)(=O)=O)C=C1 JOXIMZWYDAKGHI-UHFFFAOYSA-N 0.000 description 1
- 231100000331 toxic Toxicity 0.000 description 1
- 230000002588 toxic effect Effects 0.000 description 1
- 238000013518 transcription Methods 0.000 description 1
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- 238000002054 transplantation Methods 0.000 description 1
- YFTHZRPMJXBUME-UHFFFAOYSA-N tripropylamine Chemical compound CCCN(CCC)CCC YFTHZRPMJXBUME-UHFFFAOYSA-N 0.000 description 1
- LENZDBCJOHFCAS-UHFFFAOYSA-N tris Chemical compound OCC(N)(CO)CO LENZDBCJOHFCAS-UHFFFAOYSA-N 0.000 description 1
- 229960000281 trometamol Drugs 0.000 description 1
- 239000012588 trypsin Substances 0.000 description 1
- 238000013413 tumor xenograft mouse model Methods 0.000 description 1
- 229940121358 tyrosine kinase inhibitor Drugs 0.000 description 1
- 239000005483 tyrosine kinase inhibitor Substances 0.000 description 1
- 230000004580 weight loss Effects 0.000 description 1
- 150000003751 zinc Chemical class 0.000 description 1
Images
Classifications
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K31/00—Medicinal preparations containing organic active ingredients
- A61K31/33—Heterocyclic compounds
- A61K31/395—Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
- A61K31/495—Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with two or more nitrogen atoms as the only ring heteroatoms, e.g. piperazine or tetrazines
- A61K31/505—Pyrimidines; Hydrogenated pyrimidines, e.g. trimethoprim
- A61K31/506—Pyrimidines; Hydrogenated pyrimidines, e.g. trimethoprim not condensed and containing further heterocyclic rings
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D403/00—Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, not provided for by group C07D401/00
- C07D403/02—Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, not provided for by group C07D401/00 containing two hetero rings
- C07D403/04—Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, not provided for by group C07D401/00 containing two hetero rings directly linked by a ring-member-to-ring-member bond
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P35/00—Antineoplastic agents
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D401/00—Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom
- C07D401/14—Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing three or more hetero rings
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D403/00—Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, not provided for by group C07D401/00
- C07D403/14—Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, not provided for by group C07D401/00 containing three or more hetero rings
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D413/00—Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and oxygen atoms as the only ring hetero atoms
- C07D413/14—Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and oxygen atoms as the only ring hetero atoms containing three or more hetero rings
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D471/00—Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, at least one ring being a six-membered ring with one nitrogen atom, not provided for by groups C07D451/00 - C07D463/00
- C07D471/02—Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, at least one ring being a six-membered ring with one nitrogen atom, not provided for by groups C07D451/00 - C07D463/00 in which the condensed system contains two hetero rings
- C07D471/04—Ortho-condensed systems
Definitions
- the present disclosure relates to the technical field of pharmaceutical chemistry, and especially relates to a 2,4-bis(nitrogen-containing group)-substituted pyrimidine compound and a preparation method and use thereof.
- the epidermal growth factor receptor (EGFR) family of receptor tyrosine kinases includes EGFR (HER1), HER2 (ErbB2), HER3 (ErbB3) and HER4 (ErbB4) that participate in regulation of many developmental, metabolic and physiological processes.
- EGFR receptor HER1
- HER2 HER2
- HER3 ErbB3
- HER4 ErbB4
- the activation of EGFR receptor induces phosphorylation of the intracellular domain of EGFR and thus leads to activation of the Ras/mitogen-activated protein kinase signal pathways, the PI3K/AKT pathways, signal transduction pathways of signal transduction and transcription activation factors (J ClinOncol 2008; 26:1742-1751).
- TKIs epidermal growth factor receptor tyrosine kinase inhibitors
- ATP receptor Adenosine triphosphate
- the NSCLC patients with EGFR activating mutations after being administrated with Gefitinib, Erlotinib or Icotinib for 6-14 months, had worsened conditions (N Engl J Med 2010; 362:2380-2388; Lancet Oncol 2012; 13:239-246). 50%-60% of acquired drug-resistant patients had drug resistance mutation at T790M (the second point mutation).
- the amino acid at position 790 in exon 20 of the wild-type EGFR gene is threonine (T), while the T790M mutation is caused by substitution of threonine (T) by a bulkier methionine (M), at position 790 in exon 20 of the EGFR gene.
- the T790M mutation changes the affinity of ATP and as a result, the first-generation EGFR-TKI (tyrosine kinases inhibitor) cannot inhibit the signal effectively, which leads to drug resistance (N Eng J Med 2005; 352:786-792; PLoS Med 2005; 2:e73; Oncogene 2009; 28 (Suppl 1): S24-S31.).
- EGFR-TKI tyrosine kinases inhibitor
- the second-generation EGFR inhibitors such as Dacomitinib, Afatinib, Neratinib, XL647, and the like, are irreversible EGFR-TKIs, capable of non-specific inhibition of wild-type EGFR, L858R activating mutation and T790M drug resistance mutation.
- EGFR-TKIs irreversible EGFR-TKIs, capable of non-specific inhibition of wild-type EGFR, L858R activating mutation and T790M drug resistance mutation.
- the drug resistance due to T790M mutation is an unsolved problem in the clinical stage (Lancet Oncol 2012; 13:528-538; J Clin Oncol 2013; 31:3335-3341).
- DLT dose-limiting toxicity
- the third-generation EGFR inhibitor can inhibit T790M resistance mutation selectively and has a minimal inhibitory effect on wild-type EGFR.
- Rociletinib CO-1686
- AZD9291 AZD9291
- HM61713 HM61713 and the like are all selective irreversible T790 EGFR inhibitors (J Med Chem 2014; 57:8249-8267; Cancer Discov 2014; 4:1046-1061; Cancer Discov 2013; 3:1404-1405; Mol Cancer Ther 2014; 13:1468-1479).
- the third-generation EGFR inhibitors can inhibit EGFR mutation selectively with a minimal inhibitory effect on wild-type EGFR, they have shown strong anti-tumor activity in pre-clinical research with an obvious reduction of dose-limiting toxicity (DLT), such as rash and diarrhea toxic effects, compared with the first-generation and the second-generation EGFR inhibitors.
- DLT dose-limiting toxicity
- T790M EGFR including T790M single-point mutation and double-point mutation (such as L858R/T790M and ex19del/T790M) to address the above problem.
- T790M single-point mutation and double-point mutation such as L858R/T790M and ex19del/T790M
- Such compounds also have inhibitory activity on EGFR single-point activating mutation, such as L858R and ex19del, and have weak inhibitory effect on the wild-type EGFR. In other words, such compounds have good selectivity without causing the problem of DLT.
- a 2,4-bis(nitrogen-containing group)-substituted pyrimidine compound of formula I or a pharmaceutically acceptable salt or a stereoisomer thereof is provided herein:
- dash line between X 1 and X 2 refers to an optional single bond or double bond between X 1 and X 2 ;
- R 1 is selected from the group consisting of H, C1-C6 alkyl, C3-C6 cycloalkyl, C3-C6 cycloalkyl-substituted methyl, halo-substituted C1-C4 alkyl, hydroxyl-substituted C1-C4 alkyl, C1-C3 alkoxy-substituted C1-C4 alkyl, amino-substituted C1-C4 alkyl, C1-C3 alkylamino-substituted C1-C4 alkyl, halogen, nitro, hydroxyl, C1-C6 alkoxy, C1-C6 alkylthio, C1-C6 sulfoxide, C1-C6 sulfone, cyano, amino, C1-C3 alkyl-substituted amino, ester, acyl, amido, and carboxyl;
- R 2 and R 3 are each independently selected from the group consisting of H and C1-C6 alkyl
- R 4 is selected from the group consisting of H, OH, C1-C6 alkyl, C1-C6 alkoxy, hydroxyl-substituted C1-C4 alkyl, and C1-C3 alkoxy-substituted C1-C4 alkoxy;
- R 5 is selected from the group consisting of the groups below:
- R 15 is selected from the group consisting of H and C1-C6 alkyl
- R 16 and R 17 are each independently selected from the group consisting of H, C1-C6 alkyl, and C1-C6 alkoxy;
- Z is selected from the group consisting of C, N, and O, and when Z is O, R 8 does not exist;
- n is selected from 0, 1, or 2;
- n is selected from 1, 2, or 3;
- p is selected from 1, 2, 3, 4, 5, or 6;
- R 6 , R 7 , and R 8 are each independently selected from the group consisting of H, C1-C6 alkyl, C3-C6 cycloalkyl, C3-C6 cycloalkyl-substituted methyl, benzyl, phenyl, acyl, methylsulfonyl, halo-substituted C1-C4 alkyl, hydroxyl-substituted C1-C4 alkyl, C1-C3 alkoxy-substituted C1-C4 alkyl, amino-substituted C1-C4 alkyl, C1-C3 alkylamino-substituted C1-C4 alkyl, amino, C1-C3 alkyl-substituted amino, hydroxyl, and C1-C6 alkoxy;
- X 1 is selected from the group consisting of N, C ⁇ O, and C—R 9 ;
- R 9 is selected from the group consisting of H, C1-C6 alkyl, halo-substituted C1-C6 alkyl, C1-C6 alkyl containing O, N, or S heteroatoms, halogen, cyano, and amino;
- X 2 is selected from the group consisting of N, N—R 10 , and C—R 10 ;
- R 10 is selected from the group consisting of H, halogen, C1-C6 alkyl, C2-C6 alkenyl, C2-C6 alkynyl, C3-C6 cycloalkyl, C3-C6 cycloalkyl methyl, halo-substituted C1-C6 alkyl, and C1-C6 alkyl containing O, N, or S heteroatoms;
- X 3 , X 4 , X 5 , and X 6 are each independently selected from the group consisting of N, and C—R 11 ;
- R 11 is selected from the group consisting of H, C1-C6 alkyl, hydroxyl-substituted C1-C4 alkoxy, C1-C3 alkoxy-substituted C1-C4 alkoxy, C3-C6 cycloalkyl, C3-C6 cycloalkyl methyl, halo-substituted C1-C4 alkyl, hydroxyl-substituted C1-C4 alkyl, C1-C3 alkoxy-substituted C1-C4 alkyl; amino-substituted C1-C4 alkyl, C1-C3 alkylamino-substituted C1-C4 alkyl, halogen, nitro, hydroxyl, C1-C6 alkoxy, C1-C6 alkylthio, C1-C6 sulfoxide, C1-C6 sulfone, cyano, amino, C1-C3 alky
- G is selected from the group consisting of the following groups:
- R 12 and R 13 are each independently selected from the group consisting of H and C1-C6 alkyl
- R 14 is selected from the group consisting of H, C1-C6 alkyl, C1-C3 alkoxy-substituted C1-C4 alkyl, amino-substituted C1-C4 alkyl; C1-C3 alkylamino-substituted C1-C4 alkyl, and heterocycle-substituted C1-C4 alkyl; and
- R 1 is selected from the group consisting of H, halogen, and cyano
- R 4 is C1-C6 alkoxy
- G is
- R 10 is selected from the group consisting of H, C1-C6 alkyl, C3-C6 alkoxy, and halo-substituted C1-C6 alkyl, then Rut is not selected from any one in the group consisting of H, C1-C6 alkyl, C3-C6 cycloalkyl, halo-substituted C1-C4 alkyl, o C1-C6 sulfone; or
- R 1 is selected from the group consisting of H, halogen, and cyano
- R 4 is C1-C6 alkoxy
- G is
- R 11 is selected from the group consisting of H, C1-C6 alkyl, C3-C6 cycloalkyl, halo-substituted C1-C4 alkyl, and C1-C6 sulfone, then R 10 is not selected from any one in the group consisting of H, C1-C6 alkyl, C3-C6 cycloalkyl, and halogen-substituted C1-C6 alkyl.
- the compound disclosed herein is selected from the group consisting of compounds of formula II and formula III:
- X 1 is selected from the group consisting of N and C—R 9 ;
- X 2 , X 3 , X 4 , X 5 , and X 6 are each as previously described;
- R 1 , R 2 , R 3 , R 4 , R 5 , R 9 , and G are each defined as previously described.
- X 3 , X 5 , and X 6 are each independently selected from the group consisting of N and CH, X 4 is C—R 11 , and R 11 is as previously described.
- the compound disclosed herein is selected from the group consisting of compounds of formula II below:
- R 10 is selected from the group consisting of C1-C6 alkyl, C2-C6 alkenyl, C3-C6 cycloalkyl, and C3-C6 cycloalkylmethyl;
- X 3 , X 5 , and X 6 are each independently CH;
- X 4 is C—R 11 ;
- R 11 is selected from the group consisting of C1-C6 alkoxy, halogen, and cyano;
- R 1 , R 2 , R 3 , R 4 , R 5 , and G are each as previously described.
- the compound disclosed herein is selected from the group consisting of compounds of formula III
- X 1 and X 2 are each CH;
- X 3 is N
- X 4 is as described in claim 1 ;
- X 5 and X 6 are each CH;
- R 1 , R 2 , R 3 , R 4 , R 5 , R 9 , and G are each as previously described.
- X 1 and X 2 are each independently selected from the group consisting of C and N—R 10 ;
- R 10 is selected from the group consisting of C1-C6 alkyl, C2-C6 alkenyl, C3-C6 cycloalkyl, and C3-C6 cycloalkylmethyl;
- X 3 is selected from the group consisting of CH and N;
- X 5 , X 6 are each independently CH;
- X 4 is C—R 11 ;
- R 11 is selected from the group consisting of C1-C6 alkoxy, halogen, and cyano;
- R 1 , R 2 , and R 3 are each H;
- R 4 is a methoxy group
- R 5 is the group below:
- G is the group below:
- R 1 is selected from the group consisting of H, F, Cl, Br, methyl, trifluoromethyl, methoxy, cyano, hydroxyl, dimethylamino, and amido group;
- R 2 and R 3 are each H
- R 4 is selected from the group consisting of H, methoxy, ethoxy, methyl, ethyl, OH, and methoxyethoxy;
- R 12 and R 13 are each H;
- R 14 is selected from the group consisting of H, C1-C6 alkyl, C1-C3 alkoxy-substituted C1-C4 alkyl, amino-substituted C1-C4 alkyl, C1-C3 alkylamino-substituted C1-C4 alkyl, and heterocycle-substituted C1-C4 alkyl.
- R 5 is selected from the group consisting of the groups below:
- the present disclosure also discloses a preparation method of the 2,4-bis(nitrogen-containing group)-substituted pyrimidine compound as described above, the preparation method comprising the following steps:
- reaction scheme is as shown below:
- reaction scheme is as shown below:
- reaction scheme is as shown below:
- the present disclosure also discloses a preparation method of the aforementioned 2,4-bis(nitrogen-containing group)-substituted pyrimidine compound, the preparation method comprising the following steps:
- reaction scheme is as shown below:
- the present disclosure also discloses use of the aforementioned 2,4-bis(nitrogen-containing group)-substituted pyrimidine compound or a pharmaceutically acceptable salt or a stereoisomer thereof in preparation of medicaments for treatment or prevention of a tumor.
- the tumor is a solid tumor.
- the tumor is a malignant tumor with EGFR gene mutation.
- the tumor is non-small-cell lung cancer (NSCLC) with T790M EGFR mutation.
- NSCLC non-small-cell lung cancer
- the present disclosure also discloses a pharmaceutical composition for treatment or prevention of a tumor, the pharmaceutical composition comprising the 2,4-bis(nitrogen-containing group)-substituted pyrimidine compound or a pharmaceutically acceptable salt or a stereoisomer thereof as an active component, and a pharmaceutically acceptable carrier.
- the tumor is non-small-cell lung cancer (NSCLC) with T790M EGFR mutation.
- NSCLC non-small-cell lung cancer
- the present disclosure has following advantageous effects.
- the present disclosure provides 2,4-bis(nitrogen-containing group)-substituted pyrimidine compounds which are a series of novel compounds that can selectively inhibit T790M EGFR, including T790M single-point mutation and double-point mutation (such as L858R/T790M and ex19del/T790M). At the same time, such compounds also have inhibitory activity on EGFR single-point activating mutation, such as L858R and ex19del.
- such compounds not only have strong antiproliferation activity on L858R/T790M EGFR mutation cells (such as H1975), but also have weak antiproliferation activity on wild-type EGFR cells (such as LOVO and H358), therefore providing high selectivity.
- the 2,4-bis(nitrogen-containing group)-substituted pyrimidine compounds herein have the potential for use as medication to treat a malignant tumor with EGFR mutation, especially NSCLC with T790M EGFR mutation.
- FIG. 1 shows a graph of the drug concentration in plasma and tumor tissues as a function of time after oral administration (30 mg/kg) of the compound 91 in the H1975 tumor xenograft mice, according to an Experimental Example.
- FIG. 2 shows inhibition of EGFR phosphorylation in a T790 mutant H1975 tumor xenograft by oral administration of the compound 91, according to an Experimental Example.
- FIG. 3 shows a graph of dose-effect relationship of inhibition of tumor growth (variation in tumor volume) by compounds 20, 50, 91, and 118 in an H1975 xenograft tumor with T790 mutation, according to an Experimental Example.
- FIG. 4 shows a graph of dose-effect relationship of dose-dependent inhibition of H1975 xenograft tumor with T790 mutation by the compound 50, according to an Experimental Example.
- FIG. 5 shows a graph of dose-effect relationship of dose-dependent inhibition of H1975 xenograft tumor with T790 mutation by the compound 91, according to an Experimental Example.
- alkyl refers to a linear or branched-chain saturated aliphatic hydrocarbon group having a specified number of carbon atoms.
- C1-C6 as in “C1-C6 alkyl” is defined as the group comprising a linear or branched chain having 1, 2, 3, 4, 5, or 6 carbon atom(s).
- C1-C6 alkyl specifically includes methyl, ethyl, propyl, isopropyl, n-butyl, tert-butyl, isobutyl, pentyl, and hexyl.
- cycloalkyl refers to a monocyclic saturated aliphatic hydrocarbon group having a specified number of carbon atoms.
- cycloalkyl includes cyclopropyl, methyl-cyclopropyl, 2,2-dimethyl-cyclobutyl, 2-ethyl-cyclopentyl, cyclohexyl, and the like.
- alkoxy refers to a group with an alkyl directly connected to oxygen, such as methoxy, ethoxy and so on.
- alkylthio refers to a group with an alky directly connected to sulfur.
- C1-C3 alkylamino-substituted C1-C4 alkyl refers to a group with an alkyl containing 1, 2, or 3 carbon atom(s) connected with a nitrogen atom which in turn is connected with an alkyl containing 1, 2, 3, or 4 carbon atom(s), such as methylamino methyl, methylamino ethyl, dimethylamino methyl and so on.
- heterocycle refers to a saturated cycloalkyl or heteroaryl containing heteroatoms, wherein, the heteroatoms can be selected from the group consisting of N, S, O, and any oxidized forms of N, S, and P, preferably, a saturated heterocycloalkyl containing N, such as piperidine and so on.
- substituted refers to the replacement of hydrogen in a given structure by a specified substituent group.
- the present disclosure comprises compounds of formula I-III in their free fir's, and also comprises pharmaceutically acceptable salts and stereoisomers thereof.
- the pharmaceutically acceptable salts of the present disclosure can be synthesized from the compound of the present disclosure which contains a basic or acidic moiety by conventional chemical methods. Generally, salts of basic compounds are prepared either by ion exchange chromatography or by reacting the free base with a stoichiometric amount or an excessive amount of an inorganic or organic acid in the form of a required salt in a suitable solvent or a combination of solvents. Similarly, salts of acidic compounds are formed by reactions with an appropriate inorganic or organic base.
- the pharmaceutically acceptable salts of the compounds of this disclosure include conventional non-toxic salts of the compounds of this disclosure as formed by reacting a basic compound of this disclosure with an inorganic or organic acid.
- the conventional non-toxic salts include the salts prepared from inorganic acids, such as hydrochloric acid, hydrobromic acid, sulfuric acid, sulfamic acid, phosphoric acid, nitric acid, and the like, and also include the salts prepared from organic acids, such as acetic acid, propionic acid, succinic acid, glycolic acid, stearic acid, lactic acid, malic acid, tartaric acid, citric acid, ascorbic acid, pamoic acid, maleic acid, hydroxymaleic acid, toluylic acid, glutamic acid, benzoic acid, salicylic acid, para-aminobenzenesulfonic acid, 2-acetoxy-benzoic acid, fumaric acid, toluenesulfonic acid, methanesulphonic acid,
- the suitable “pharmaceutically acceptable salt” refers to a salt prepared from pharmaceutically acceptable non-toxic bases, including inorganic bases and organic bases. Salts derived from such inorganic bases include aluminum, ammonium, calcium, copper, ferric, ferrous, lithium, magnesium, manganese, manganous, potassium, sodium, zinc salts and the like. Particularly preferred are ammonium, calcium, magnesium, potassium, and sodium salts.
- Salts derived from pharmaceutically acceptable organic non-toxic bases include salts of primary, secondary, and tertiary amines salts, and the substituted amines include naturally occurring substituted amines, cyclic amines, alkaline ion-exchange resins, such as arginine, betaine, caffeine, choline, N,N′-dibenzylethylenediamine, diethylamine, 2-diethylaminoethanol, 2-dimethylaminoethanol, aminoethanol, ethanolamine, ethylene diamine, N-ethylmorpholine, N-ethylpiperidine, dextrosamine, glucosamine, histidine, hydroxocobalamin, isopropylamine, lysine, methyl glucamine, morpholine, piperazine, piperidine, pyridine, polyamine resin, procaine, purine, theobromine, triethylamine, trimethylamine, tripropylamine, tromethamine and the
- the compound of this disclosure may be prepared by employing reactions as shown in the following synthetic schemes (scheme 1-6), in addition to other standard procedures that are known in the literature or exemplified in experimental procedures.
- the compounds and synthetic processes of the present disclosure will be better understood in connection with the following synthetic schemes which illustrate the method by which the compound of the disclosure may be prepared. Such description is intended to be illustrative rather than limiting the scope of the present disclosure.
- Step 1a Preparation of 4-fluoro-2-methoxyaniline (Intermediate 102): 2-Methoxy-4-fluoro-1-nitrobenzene (Intermediate 101) (20 g, 0.12 mol, 1.0 eq), ammonium chloride (13 g, 0.24 mol, 2.0 eq) and water (50 mL) were dissolved in ethanol (200 mL). After heated to 55° C., iron powder (13 g, 0.24 mol, 2.0 eq) was added portionwise. The temperature was raised to 85° C. and after reaction for 2 hours, the temperature was lowered to room temperature, filtration was performed and the solvent was rotary evaporated.
- Intermediate 101 2-Methoxy-4-fluoro-1-nitrobenzene (Intermediate 101) (20 g, 0.12 mol, 1.0 eq), ammonium chloride (13 g, 0.24 mol, 2.0 eq) and water (50 mL) were dissolved in ethanol (200 mL). After heated to 55°
- Step 1b Preparation of 4-fluoro-2-methoxy-5-nitroaniline (Intermediate 103): Under an ice bath condition, 4-fluoro-2-methoxyaniline (Intermediate 102) (15 g, 106.4 mmol, 1.0 eq) was added dropwise to a concentrated sulfuric acid (150 mL) while controlling the temperature around 0° C. during the course of addition. After the forming solid was dissolved completely, potassium nitrate (11 g, 106.4 mmol, 1.0 eq) was added portionwise and the reaction was continued for 1 hour under this condition. The reaction was poured into ice water and the pH was adjusted to basic by sodium hydroxide.
- Step 1c Preparation of 1-bromo-4-fluoro-2-methoxy-5-nitrobenzene (Intermediate 104): Under nitrogen atmosphere, cupric bromide (3.568 g, 16 mmol, 1.5 eq) and tert-Butyl nitrite (3.399 g, 33 mmol, 3 eq) were mixed in acetonitrile (250 mL) and heated to 50° C. A solution of 4-fluoro-2-methoxy-5-nitroaniline (103) (2 g, 11 mmol, 1 eq) in acetonitrile (20 mL) was added dropwise to the system and stirred for reaction for additional 2.5 hours.
- cupric bromide 3.568 g, 16 mmol, 1.5 eq
- tert-Butyl nitrite 3.399 g, 33 mmol, 3 eq
- Step 1d Preparation of N 1 -(4-bromo-5-methoxy-2-nitrophenyl)-N 1 ,N 2 ,N 2 -trimethylethane-1,2-diamine (Intermediate 105-A-5): 1-Bromo-4-fluoro-2-methoxy-5-nitrobenzene (Intermediate 104) (1.87 g, 7.48 mmol, 1 eq), N, N-diisopropylethylamine (2.41 g, 17.8 mmol, 2.5 eq) and N 1 ,N 1 ,N 2 -trimethylethane-1,2-diamine (1.146 g, 11.22 mmol, 1.5 eq) were dissolved in ethanol (50 mL) and heated to reflux and react under stirring for 16 hours.
- Step 1e Preparation of N 1 -(2-(dimethylamino)ethyl)-5-methoxy-N 1 -methyl-2-nitrobenzene-1,4-diamine (Intermediate 106-A-11): 4-Fluoro-2-methoxy-5-nitroaniline (Intermediate 103) (2 g, 10.75 mmol, 1 eq), DIPEA (2.77 g, 21.5 mmol, 2 eq) and N 1 ,N 1 ,N 2 -trimethylethane-1,2-diamine (1.644 g, 16.125 mmol, 1.5 eq) were mixed in tetrahydrofuran (50 mL). The mixture was stirred under reflux to react for 3 days.
- Intermediate 204-8 1-(2-chloro-5-methyl-pyrimidin-4-yl)-1H-indole (Intermediate 204-8) was prepared by reacting 1H-indole (201-6) with 2,4-dichloro-5-methylpyrimidine (202-8). LCMS (ESI): m/z 244[M+H] + .
- Step 4-1a Preparation of N-(4-fluoro-2-methoxy-5-nitrophenyl)-4-(1H-indol-1-yl)pyrimidin-2-amine (Intermediate 401-77): A mixed solution of compound 1-(2-chloropyrimidin-4-yl)-1H-indole (204-6) (500 mg, 2.18 mmol, 1 eq), 4-methylbenzenesulfonic acid (450.47 mg, 2.616 mmol, 1.2 eq) and compound 4-fluoro-2-methoxy-5-nitroaniline (103) (405.5 mg, 2.18 mmol, 1 eq) in tert-butanol (15 mL) was stirred to react at 110° C.
- compound 1-(2-chloropyrimidin-4-yl)-1H-indole (204-6) 500 mg, 2.18 mmol, 1 eq
- 4-methylbenzenesulfonic acid 450.47 mg, 2.616 mmol
- Step 4-1b Preparation of N-(4-(3-(dimethylamino)azetidin-1-yl)-2-methoxy-5-nitrophenyl)-4-(1H-indol-1-yl)pyrimidin-2-amine
- Intermediate 401-C-77 N-(4-fluoro-2-methoxy-5-nitrophenyl)-4-(1H-indol-1-yl)pyrimidin-2-amine (401-77) (150 mg, 0.4 mmol, 1.0 eq) was dissolved in 30 mL tetrahydrofuran, and then N, N-diisopropylethylamine (153 mg, 1.2 mmol, 3.0 eq) and N,N-dimethylazetidin-3-amine hydrochloride (81 mg, 0.6 mmol, 1.5 eq) were added in sequence.
- Step 4-1c Preparation of N 1 -(4-(1H-indol-1-yl)pyrimidin-2-yl)-4-(3-(dimethylamino) azetidin-1-yl)-6-methoxybenzene-1,3-diamine (Intermediate 403-C-77): N-(4-(3-(dimethylamino)azetidin-1-yl)-2-methoxy-5-nitrophenyl)-4-(1H-indol-1-yl)pyrimidin-2-amine (402-C-77) (170 mg, 0.37 mmol, 1.0 eq) and ammonia chloride (65 mg, 1.2 mmol, 8.0 eq) were mixed in ethanol (30 mL) and water (7 mL) and heated to 50° C.
- Step 4-2a Preparation of N 1 -(4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-yl)-N 4 -(2-(dimethylamino)ethyl)-2-methoxy-N 4 -methyl-5-nitrobenzene-1,4-diamine (Intermediate 402-A-5): Under nitrogen protection, 4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-amine (205-5) (265 mg, 0.95 mmol, 1.2 eq), N 1 -(4-bromo-5-methoxy-2-nitrophenyl)-N 1 ,N 2 ,N 2 -trimethylethane-1,2-diamine (105-A-1) (266 mg, 0.80 mmol, 1.0 eq), cesium carbonate (782 mg, 2.4 mmol, 3.0 eq), 4,5-bisdiphenylphosphine-9,
- Step 4-2b Preparation of N 4 -(4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-yl)-N 1 -(2-(dimethylamino)ethyl)-5-methoxy-N 1 -methylbenzene-1,2,4-triamine (Intermediate 403-A-5): N 1 -(4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-yl)-N 4 -(2-(dimethylamino)ethyl)-2-methoxy-N 4 -methyl-5-nitrobenzene-1,4-diamine (402-5) (140 mg, 0.26 mmol, 1.0 eq) and ammonia chloride (114 mg, 2.12 mmol, 8.0 eq) were added to ethanol (30 mL) and water (8 mL), and heated to 50° C.
- Step 4-3a Preparation of N 2 -(4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxy-5-nitrophenyl)-4-(1H-indol-1-yl)-N 5 -methylpyrimidine-2,5-diamine
- Intermediate 402-A-11 2-chloro-4-(1H-indol-1-yl)-N-methylpyrimidin-5-amine (204-11) (268 mg, 1.036 mmol) was dissolved in toluene (40 mL) and then N 1 -(2-(dimethylamino)ethyl)-5-methoxy-N 1 -methyl-2-nitrobenzene-1,4-diamine (106-A-11) (278 mg, 1.036 mmol, 1.0 eq), Pd 2 (dba) 3 (94.8 mg, 0.1036 mmol, 0.1 eq), cesium carbonate (675 mg, 2.072
- Step 4-3b Preparation of N 4 -(4-(1H-indol-1-yl)-5-(methylamino)pyrimidin-2-yl)-N 1 -(2-(dimethylamino)ethyl)-5-methoxy-N 1 -methylbenzene-1,2,4-triamine
- N 2 -(4-((2-(Dimethylamino)ethyl)(methyl)amino)-2-methoxy-5-nitrophenyl)-4-(1H-indol-1-yl)-N 5 -methylpyrimidine-2,5-diamine (402-A-11) (260 mg, 0.537 mmol, 1.0 eq) was dissolved in methanol (40 mL) and then zinc powder (279 mg, 4.297 mmol, 8.0 eq) and ammonia chloride (230 mg, 4.297 mmol, 8.0 eq) were added.
- the compound obtained above (500 mg, 1.03 mmol, 1 eq) was dissolved in a mixed solvent of ethanol (10 mL) and dimethyl sulfoxide (1 mL), and then sodium hydroxide (1 ml, 1M aqueous solution) was added and stirred in an ice bath to mix well. Hydrogen peroxide (1 ml, 30% aqueous solution) was added dropwise slowly and stir continued for 5 minutes in an ice bath.
- Method 5-1 Prepared Through Intermediates 503 and 504.
- Step 5-2a Preparation of 6-chloro-1-methyl-1H-benzo[d]imidazol-2(3H)-one (Intermediate 502-51): 5-Chloro-N 1 -methylbenzene-1,2-diamine (501-51) (3.3 g, 21 mmol, 1.0 eq) was dissolved in dichloromethane (150 mL) and triethylamine (4.4 mL, 31.5 mmol, 1.5 eq) was added. The mixture temperature was lowered to 0° C. and triphosgene (2.6 g, 8.4 mmol, 0.4 eq) in dichloromethane (30 mL) was added dropwise slowly under nitrogen protection.
- Step 5-2b Preparation of 5-chloro-1-(2-chloropyrimidin-4-yl)-3-methyl-1H-benzo[d]imidazol-2(3H)-one
- Intermediate 503-51 6-Chloro-1-methyl-1H-benzo[d]imidazol-2(3H)-one (502-51) (500 mg, 2.7 mmol, 1.0 eq) and caesium carbonate (670 mg, 4.05 mmol, 1.5 eq) were mixed in N, N-dimethylformamide (70 mL), and then 2,4-dichloropyrimidine (410 mg, 2.7 mmol, 1.0 eq) was added under nitrogen protection and stifled at room temperature for 2 h.
- Step 5-2c Preparation of 5-chloro-1-(2-(4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxy-5-nitrophenylamino)pyrimidin-4-yl)-3-methyl-1H-benzo[d]imidazol-2(3H)-one (Intermediate 505-A-51): 5-Chloro-1-(2-chloropyrimidin-4-yl)-3-methyl-1H-benzo[d]imidazol-2(3H)-one (503-51) (240 mg, 0.81 mmol, 1.0 eq), N 1 -(2-(dimethylamino)ethyl)-5-methoxy-N 1 -methyl-2-nitrobenzene-1,4-diamine (106-A-11) (216 mg, 0.81 mmol, 1.0 eq), caesium carbonate (528 mg, 1.62 mmol, 2.0 eq), tris(dibenzylidene
- Step 5-2d Preparation of 1-(2-(5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenylamino)pyrimidin-4-yl)-5-chloro-3-methyl-1H-benzo[d]imidazol-2(3H)-one (Intermediate 506-A-51): 5-Chloro-1-(2-(4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxy-5-nitrophenylamino)pyrimidin-4-yl)-3-methyl-1H-benzo[d]imidazol-2(3H)-one (505-A-51) (150 mg, 0.28 mmol, 1.0 eq) and ammonium chloride (126 mg, 2.38 mmol, 8.5 eq) were mixed in ethanol (30 mL) and water (7 mL) and heated to 50° C.
- Reduced iron powder (125 mg, 2.24 mmol, 8.0 eq) was added and the mixture was heated to 80° C. to react for 2 hours. After the reaction was completed, the mixture was filtered and the filtrate was concentrated which was extracted with dichloromethane.
- Step 5-3a Preparation of 1-(3-methylbut-2-enyl)-1H-benzo[d]imidazol-2(3H)-one (Intermediate 502-62): o-Nitroaniline (5 g, 36 mmol, 1.0 eq) was dissolved in N-methylpyrrolidone (100 mL) and to it was added cesium carbonate (23 g, 72 mmol, 2.0 eq). 1-Bromo-3-methyl-2-butene (7 g, 46.8 mmol, 1.3 eq) was then added dropwise to the above mixture and heated to 100° C. to react overnight.
- Step 5-3b Preparation of 1-(2-chloropyrimidin-4-yl)-3-(3-methylbut-2-enyl)-1H-benzo[d]imidazol-2 (3H)-one (Intermediate 503-62): 1-(3-Methyl-2-butene)-1H-benzo[d]imidazol-2(3H)-one (502-63) (600 mg, 2.97 mmol, 1.0 eq) and cesium carbonate (1.93 g, 5.94 mmol, 2.0 eq) were mixed in N, N-dimethylformamide (10 mL).
- Step 5-3c Preparation of 1-(2-(4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxy-5-nitrophenylamino)pyrimidin-4-yl)-3-(3-methylbut-2-enyl)-1H-benzo[d]imidazol-2 (3H)-one (Intermediate 505-A-62): 1-(2-Chloropyrimidin-4-yl)-3-(3-methylbut-2-enyl)-1H-benzo[d]imidazol-2(3H)-one (350 mg, 1.27 mmol, 1.0 eq) and 4-fluoro-2-methoxy-5-nitroaniline (103) (261 mg, 1.4 mmol, 1.3 eq) were mixed in isopropanol (60 mL) and then concentrated hydrochloric acid (1.5 mL) was added.
- Step 5-3d Preparation of 1-(2-(5-amino-4-((2-(dimethylamino) ethyl)(methyl)amino)-2-methoxyphenyl amino)pyrimidin-4-yl)-3-(3-methylbut-2-enyl)-1H-benzo[d]imidazol-2 (3H)-one (Intermediate 506-A-62): 1-(2-(4-((2-(Dimethylamino)ethyl)(methyl)amino)-2-methoxy-5-nitrophenylamino)pyrimidin-4-yl)-3-(3-methylbut-2-enyl)-1H-benzo[d]imidazol-2 (3H)-one (505-A-62) (132 mg, 0.24 mmol, 1.0 eq) and ammonium chloride (108 mg, 2.04 mmol, 8.5 eq) were mixed in ethanol (40 mL) and water (10 mL) and heated to 50° C.
- Reduced iron powder (108 mg, 1.92 mmol, 8.0 eq) was then added and the mixture was heated to 80° C. to react for 2 hours. After the reaction was completed, it was filtered and the filtrate was concentrated and extracted with dichloromethane.
- N 4 -(4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-yl)-N 1 -(2-(dimethylamino)ethyl)-5-methoxy-N 1 -methylbenzene-1,2,4-triamine (403-A-5) (90 mg, 0.26 mmol, 1.0 eq), triethylamine (0.09 mL, 0.65 mmol, 2.5 eq), HATU (118 mg, 0.31 mmol, 1.2 eq) and acrylic acid (602-3) (23 mg, 0.31 mmol, 1.2 eq) were added into dichloromethane (15 mL) and stirred for 0.5 hour at room temperature.
- the synthetic method was similar to that described in EXAMPLE 6, except that N 4 -(4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-yl)-N 1 -(2-(dimethylamino)ethyl)-5-methoxy-N 1 -methylbenzene-1,2,4-triamine (403-A-5) therein was replaced by N 4 -(4-(1H-indol-1-yl)-5-methoxypyrimidin-2-yl)-N 1 -(2-(dimethylamino)ethyl)-5-methoxy-N 1 -methylbenzene-1,2,4-triamine (403-A-6) (270 mg, 0.58 mmol, 1.0 eq).
- N-(5-((4-(1H-Indol-1-yl)-5-methoxypyrimidin-2-yl)amino)-2-((2-(dimethylamino)ethyl)(methyl)amino)-4-methoxyphenyl)acrylamide was obtained as a beige solid (35 mg, yield: 12%).
- the synthetic method was similar to that described in EXAMPLE 6, except that N 4 -(4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-yl)-N 1 -(2-(dimethylamino)ethyl)-5-methoxy-N 1 -methylbenzene-1,2,4-triamine (403-A-5) therein was replaced by N 4 -(4-(1H-indol-1-yl)-5-methylpyrimidin-2-yl)-N 1 -(2-(dimethylamino)ethyl)-5-methoxy-N 1 -methylbenzene-1,2,4-triamine (99 mg, 0.22 mmol, 1.0 eq).
- the synthetic method was similar to that described in EXAMPLE 6, except that N 4 -(4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-yl)-N 1 -(2-(dimethylamino)ethyl)-5-methoxy-N 1 -methylbenzene-1,2,4-triamine (403-A-5) therein was replaced by N 4 -(5-(dimethylamino)-4-(1H-indol-1-yl)pyrimidin-2-yl)-N 1 -(2-(dimethylamino)ethyl)-5-methoxy-N 1 -methylbenzene-1,2,4-triamine (403-A-10) (216 mg, 0.4695 mmol, 1.0 eq).
- N-(5-(5-(Dimethylamino)-4-(1H-indol-1-yl)pyrimidin-2-ylamino)-2-((2-(dimethylamino)ethyl)(methyl)amino)-4-methoxyphenyl)acrylamide was obtained as a yellow solid (60 mg, yield: 19.2%).
- the synthetic method was similar to that described in EXAMPLE 6, except that N 4 -(4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-yl)-N 1 -(2-(dimethylamino)ethyl)-5-methoxy-N 1 -methylbenzene-1,2,4-triamine (403-A-5) therein was replaced by N 4 -(4-(1H-indol-1-yl)-5-(methylamino)pyrimidin-2-yl)-N 1 -(2-(dimethylamino)ethyl)-5-methoxy-N 1 -methylbenzene-1,2,4-triamine (403-A-11) (216 mg, 0.4695 mmol, 1.0 eq).
- the synthetic method was similar to that described in EXAMPLE 6, except that N 4 -(4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-yl)-N 1 -(2-(dimethylamino)ethyl)-5-methoxy-N 1 -methylbenzene-1,2,4-triamine (403-A-5) therein was replaced by N 1 -(2-(dimethylamino)ethyl)-5-methoxy-N 4 -(4-(5-methoxy-1H-indol-1-yl)pyrimidin-2-yl)-N 1 -methylbenzene-1,2,4-triamine (403-A-27) (100 mg, 0.206 mmol, 1.0 eq).
- N-(2-((2-(Dimethylamino)ethyl)(methyl)amino)-4-methoxy-5-((4-(5-methoxy-1H-indol-1-yl)pyrimidin-2-yl)amino)phenyl)acrylamide was obtained as a yellow solid (67 mg, yield: 59.98%).
- the synthetic method was similar to that described in EXAMPLE 6, except that N 4 -(4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-yl)-N 1 -(2-(dimethylamino)ethyl)-5-methoxy-N 1 -methylbenzene-1,2,4-triamine (403-A-5) therein was replaced by N 1 -(2-(dimethylamino)ethyl)-N 4 -(4-(5-fluoro-1H-indol-1-yl)pyrimidin-2-yl)-5-methoxy-N 1 -methylbenzene-1,2,4-triamine (403-A-28) (400 mg, 0.9 mmol, 1.0 eq).
- N-(2-((2-(Dimethylamino)ethyl)(methyl)amino)-5-((4-(5-fluoro-1H-indol-1-yl)pyrimidin-2-yl)amino)-4-methoxyphenyl)acrylamide was obtained as a yellow solid (230 mg, yield: 51%).
- N-(2-((2-(Dimethylamino)ethyl)(methyl)amino)-5-((4-(6-fluoro-1H-indol-1-yl)pyrimidin-2-yl)amino)-4-methoxyphenyl)acrylamide was obtained as a yellow solid (60 mg, yield: 33.15%).
- the synthetic method was similar to that described in EXAMPLE 6, except that N 4 -(4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-yl)-N 1 -(2-(dimethylamino)ethyl)-5-methoxy-N 1 -methylbenzene-1,2,4-triamine (403-A-5) therein was replaced by N 1 -(2-(dimethylamino)ethyl)-N 4 -(4-(4-fluoro-1H-indol-1-yl)pyrimidin-2-yl)-5-methoxy-N 1 -methylbenzene-1,2,4-triamine (403-A-30) (195 mg, 0.43 mmol, 1.0 eq).
- N-(2-((2-(Dimethylamino)ethyl)(methyl)amino)-5-((4-(4-fluoro-1H-indol-1-yl)pyrimidin-2-yl)amino)-4-methoxyphenyl)acrylamide was obtained as a yellow solid (60 mg, yield: 33.15%).
- the synthetic method was similar to that described in EXAMPLE 6, except that N 4 -(4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-yl)-N 1 -(2-(dimethylamino)ethyl)-5-methoxy-N 1 -methylbenzene-1,2,4-triamine (403-A-5) therein was replaced by N 4 -(4-(5-chloro-1H-indol-1-yl)pyrimidin-2-yl)-N 1 -(2-(dimethylamino)ethyl)-5-methoxy-N 1 -methylbenzene-1,2,4-triamine (300 mg, 0.65 mmol, 1.0 eq).
- N-(5-((4-(5-Chloro-1H-indol-1-yl)pyrimidin-2-yl)amino)-2-((2-(dimethylamino)ethyl)(methyl)amino)-4-methoxyphenyl)acrylamide was obtained as a beige solid (85 mg, yield: 25%).
- N-(5-((4-(5-Cyano-1H-indol-1-yl)pyrimidin-2-yl)amino)-2-((2-(dimethylamino)ethyl)(methyl) amino)-4-methoxyphenyl)acrylamide was obtained as a yellow solid (35 mg, yield: 31.53%).
- N 1 -(2-(dimethylamino)ethyl)-5-methoxy-N 1 -methyl-N 4 -(4-(5-nitro-1H-indol-1-yl)pyrimidin-2-yl)benzene-1,2,4-triamine (403-A-34) (0.13 g, 0.27 mmol) and triethylamine (55 mg, 055 mmol) were dissolved in tetrahydrofuran (10 mL) and cooled to ⁇ 70° C.
- Acryloyl chloride 25 mg, 0.27 mmol was then added dropwise slowly while stirring. The mixture was reacted at ⁇ 70° C.
- N-(2-((2-(dimethylamino)ethyl)(methyl)amino)-5-((4-(5-hydroxy-1H-indol-1-yl)pyrimidin-2-yl)amino)-4-methoxyphenyl)acrylamide was obtained as a yellow solid (55 mg, yield: 44.12%).
- N 4 -(4-(5-(2-((tert-butyldiphenylsilyl)oxy)ethoxy)-1H-indol-1-yl)pyrimidin-2-yl)-N 1 -(2-(dimethylamino)ethyl)-5-methoxy-N 1 -methylbenzene-1,2,4-triamine (403-A-37) (320 mg, 0.41 mmol, 1.0 eq), triethylamine (0.1 mL, 0.8 mmol, 2.0 eq), HATU (182 mg, 0.48 mmol, 1.2 eq) and acrylic acid (35 mg, 0.48 mmol, 1.2 eq) were added into dichloromethane (25 mL) and stirred at room temperature for 0.5 hour.
- the synthetic method was similar to that described in EXAMPLE 6, except that N 4 -(4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-yl)-N 1 -(2-(dimethylamino)ethyl)-5-methoxy-N 1 -methylbenzene-1,2,4-triamine (403-A-5) therein was replaced by N 4 -(4-(3-chloro-1H-indol-1-yl)pyrimidin-2-yl)-N 1 -(2-(dimethylamino)ethyl)-5-methoxy-N 1 -methylbenzene-1,2,4-triamine (403-A-46) (216 mg, 0.46 mmol, 1 eq).
- N-(5-((4-(3-Chloro-1H-indol-1-yl)pyrimidin-2-yl)amino)-2-((2-(dimethylamino)ethyl)(methyl)amino)-4-methoxyphenyl)acrylamide was obtained as a pale yellow solid (50 mg, yield: 29%).
- the synthetic method was similar to that described in EXAMPLE 24, except that 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-5-chloro-3-methyl-1H-benzo[d]imidazol-2(3H)-one (506-A-55) was replaced by 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-3-methyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazole-5-carbonitrile (506-A-52) (65.4 mg, 0.136 mmol, 1 eq).
- N-(5-((4-(5-Cyano-3-methyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)pyrimidin-2-yl)amino)-2-((2-(dimethylamino)ethyl)(methyl)amino)-4-methoxyphenyl)acrylamide was obtained as a yellow solid (40 mg, yield: 55.06%).
- the synthetic method was similar to that described in EXAMPLE 24, except that 1-(2-((5-amino-4-((2-dimethylaminoethyl)(methyl)amino)-2-methoxy-phenyl)amino)-5-fluoro-4-yl)-3-methyl-1H-benzo[d]imidazol-2(3H)-one (506-A-55) therein was replaced by 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-5-methoxy-3-methyl-1H-benzo[d]imidazol-2(3H)-one (506-A-53) (170 mg, 0.35 mmol, 1 eq).
- the synthetic method was similar to that described in EXAMPLE 24, except that 1-(2-((5-amino-4-((2-dimethylamino ethyl)(methyl)amino)-2-methoxy-phenyl)amino)-5-fluoro-4-yl)-3-methyl-1H-benzo[d]imidazol-2(3H)-one (506-A-55) therein was replaced by 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl) amino)-5-methoxypyrimidin-4-yl)-3-methyl-1H-benzo[d]imidazol-2(3H)-one (506-A-57) (400 mg, 0.81 mmol, 1.0 eq).
- N 4 -(4-(1H-indol-1-yl)pyrimidin-2-yl)-N 1 -(2-(dimethylamino)ethyl)-5-methoxy-N 1 -methylbenzene-1,2,4-triamine (403-A-1) (100 mg, 0.232 mmol, 1 eq) in dichloromethane (2 mL) was added dropwise to the reaction and stirred for 1 hour. The reaction solution was extracted with water and ethyl acetate.
- N, N-diisopropylethylamine (87 mg, 0.672 mmol, 2.0 eq), HATU (128 mg, 0.336 mmol, 1.0 eq) and (E)-4-(piperidin-1-yl)but-2-enoic acid (602-70)(100 mg, crude) were then added in sequence, and the mixture was stirred at room temperature for two hours. After the reaction was completed, saturated aqueous sodium carbonate solution was added to quench the reaction and extracted with dichloromethane (3 ⁇ 80 mL).
- the synthetic method was similar to that described in Example 6, except that N 4 -(4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-yl)-N 1 -(2-(dimethylamino)ethyl)-5-methoxy-N 1 -methylbenzene-1,2,4-triamine (403-A-5) therein was replaced by N 4 -(4-(1H-indol-1-yl)pyrimidin-2-yl)-5-methoxy-N 1 -methyl-N 1 -(2-morpholin-4-yl-ethyl)benzene-1,2,4-triamine (403-B-82) (0.12 g, 0.25 mmol).
- the synthetic method was similar to that described in Example 6, except that N 4 -(4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-yl)-N 1 -(2-(dimethylamino)ethyl)-5-methoxy-N1-methylbenzene-1,2,4-triamine (403-A-5) therein was replaced by N 1 -(4-(1H-indol-1-yl)pyrimidin-2-yl)-6-methoxy-4-(4-methylpiperazin-1-yl)benzene-1,3-diamine (403-C-84) (180 mg, 0.41 mmol, 1.0 eq).
- N-(5-((4-(1H-Indol-1-yl)pyrimidin-2-yl)amino)-4-methoxy-2-(4-methylpiperazin-1-yl) phenyl)acrylamide was obtained as a light yellow solid (40 mg, yield: 20%).
- the synthetic method was similar to that described in Example 6, except that N 4 -(4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-yl)-N 1 -(2-(dimethylamino)ethyl)-5-methoxy-N1-methylbenzene-1,2,4-triamine (403-A-5) therein was replaced by N 1 -(2-(dimethylamino)ethyl)-5-methoxy-N 4 -(4-(5-methoxy-1H-pyrrolo[3,2-b]pyri din-1-yl)pyrimidin-2-yl)-N 1 -methylbenzene-1,2,4-triamine (403-A-20) (132 mg, 0.286 mmol, 1.0 eq).
- N-(2-((2-(Dimethylamino)ethyl)(methyl)amino)-4-methoxy-5-((4-(5-methoxy-1H-pyrrolo[3,2-b]pyridin-1-yl)pyrimidin-2-yl)amino)phenyl)acrylamide was obtained as a white solid (90 mg, yield: 61.05%).
- Step 42a Preparation of 5-fluoro-N 1 -methylbenzene-1,2-diamine (Intermediate 501-50): Under an ice bath condition, 2,4-difluoronitrobenzene (10 g, 62.9 mmol, 1.0 eq) was dissolved in tetrahydrofuran (150 mL) and was then added 40% aqueous solution of methylamine (9.8 g, 125 mmol, 2.0 eq) was added dropwise quickly. The mixture was reacted at room temperature for 4 hours and the LCMS check indicated reaction completion.
- Step 42b Preparation of 6-fluoro-1-methyl-1H-benzo[d]imidazol-2(3H)-one (Intermediate 502-50): 5-Fluoro-N 1 -methylbenzene-1,2-diamine (501-50) (4.2 g, 30.0 mmol, 1.0 eq) was dissolved in dichloromethane (100 mL) and then triethylamine (6.1 g, 60.0 mmol, 2.0 eq) was added. Under nitrogen protection, the reaction was cooled to about 0° C.
- Step. 42c Preparation of 1-(2-chloropyrimidin-4-yl)-5-fluoro-3-methyl-1H-benzo[d]imidazol-2(3H)-one (Intermediate 503-50): 6-Fluoro-1-methyl-1H-benzo[d]imidazol-2(3H)-one (7.0 g, 42.2 mmol, 1.0 eq) and 2,4-dichloropyrimidine (9.4 g, 63.3 mmol, 1.5 eq) were dissolved in DMF (200 mL) and to it was added Cesium carbonate (20.7 g, 63.3 mmol, 1.5 eq). The mixture was reacted for 4 hours while controlling the temperature below 20° C.
- Step 42d Preparation of 1-(2-((4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxy-5-nitrophenyl)amino)pyrimidin-4-yl)-5-fluoro-3-methyl-1H-benzo[d]imidazol-2(3H)-one (Intermediate 505-A-50): 1-(2-Chloropyrimidin-4-yl)-5-fluoro-3-methyl-1H-benzo[d]imidazol-2(3H)-one (503-50) (10 g, 35.9 mmol, 1.0 eq) and 4-fluoro-2-methoxy-5-nitroaniline (103) (7.3 g, 39.5 mmol, 1.1 eq) were dissolved in isopropanol (400 mL) and to it was added concentrated hydrochloric acid (8 mL) dropwise.
- the characterization data of this compound were: LCMS (ESI): m/z 429 [M+H] + .
- the compound obtained above (6.5 g, 15.2 mmol, 1.0 eq), N,N,N-trimethylethylenediamine (3.1 g, 30.4 mmol, 2.0 eq) and N,N-diisopropylethylamine (5.9 g, 45.6 mmol, 3.0 eq) were dissolved in tetrahydrofuran (100 mL), and then N-methylpyrrolidone (20 mL) was added.
- the reaction system was heated to reflux and stirred to react for 18 hours and then cooled to room temperature and added ethyl acetate (100 mL), which was then washed with water and saturated brine, dried over anhydrous magnesium sulfate.
- the solvent was rotary evaporated to give a crude product as a yellow solid.
- the crude product was slurried in methanol and filtered.
- Step. 42e Preparation of 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-5-fluoro-3-methyl-1H-benzo[d]imidazol-2(3H)-one (Intermediate 506-A-50): 1-(2-((4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxy-5-nitrophenyl)amino)pyrimidin-4-yl)-5-fluoro-3-methyl-1H-benzo[d]imidazol-2(3H)-one (505-A-50) (7.0 g, 13.7 mmol, 1.0 eq), iron powder (3.8 g, 68.5 mmol, 5.0 eq), ammonium chloride (3.7 g, 68.5 mmol, 5.0 eq) and water (20 mL)
- Step. 42f Preparation of N-(2-((2-(dimethylamino)ethyl)(methyl) amino)-5-((4-(5-fluoro-3-methyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)pyrimidin-2-yl)amino)-4-methoxyphenyl)acrylamide
- Compound 50 Method 1: The reaction solution of 1-(2-(5-amino-4-((2-dimethylamino ethyl)(methyl)amino)-2-methoxyanilino)pyrimidin-4-yl) 5-fluoro-3-methyl-1H-benzo[d]imidazol-2(3H)-one (506-A-50) obtained above was cooled to about 0° C.
- the intermediate was dissolved in acetonitrile (100 mL), and then triethylamine (10 mL) was added and the reaction was refluxed for 18 hours.
- the reaction was cooled to room temperature and water (100 mL) was added, and stirred for 1 hour to allow the solid to precipitate out completely and filtered.
- the filter cake was washed with water and petroleum ether.
- the synthetic method was similar to that described in Example 24, except that 1-(2-((5-amino-4-((2-dimethylaminoethyl)(methyl)amino)-2-methoxy-phenyl)amino)-5-fluoro-4-yl)-3-methyl-1H-benzo[d]imidazol-2(3H)-one (506-A-55) therein was replaced by 1-(2-(5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl amino)pyrimidin-4-yl)-3-(3-methylbut-2-enyl)-1H-benzo[d]imidazol-2(3H)-one (506-A-62) (110 mg, 0.2 mmol, 1.0 eq).
- the synthetic method was similar to that described in Example 24, except that 1-(2-((5-amino-4-((2-dimethylaminoethyl)(methyl)amino)-2-methoxy-phenyl)amino)-5-fluoro-4-yl)-3-methyl-1H-benzo[d]imidazol-2(3H)-one (506-A-55) therein was replaced by 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-3-(cyclopropylmethyl)-1H-benzo[d]imidazol-2 (3H)-one (506-A-63) (529 mg, 1.05 mmol, 1.0 eq).
- N-(5-((4-(3-(cyclopropylmethyl)-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)pyrimidin-2-yl)amino)-2-((2-(dimethylamino)ethyl)(methyl)amino)-4-methoxyphenyl)acrylamide was obtained as a cream colored solid (300 mg, yield: 51.4%).
- the synthetic method was similar to that described in Example 6, except that N 4 -(4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-yl)-N 1 -(2-(dimethylamino)ethyl)-5-methoxy-N 1 -methylbenzene-1,2,4-triamine (403-A-5) therein was replaced by N 4 -(4-(1H-indol-1-yl)pyrimidin-2-yl)-5-methoxy-N 1 -methyl-N 1 -(2-(piperidin-1-yl)ethyl)benzene-1,2,4-triamine (150 mg, 0.318 mmol, 1.0 eq) (403-B-81).
- Step 47a Preparation of 5-fluoro-N 1 -isopropylbenzene-1,2-diamine (Intermediate 501-91): 2,4-Difluoronitrobenzene (10 g, 62.9 mmol, 1.0 eq), isopropylamine (4.8 g, 81.8 mmol, 1.5 eq) and potassium carbonate (17.4 g, 125.8 mmol, 2.0 eq) were dissolved in DMF (150 mL) and reacted at room temperature for 18 hours. The LCMS check indicated reaction completion and the reaction was poured into water (400 mL) and stirred for 30 minutes to allow crystallize to precipitate out completely. The mixture was filtered and the filter cake was wash with water.
- Step 47b Preparation of 6-fluoro-1-isopropyl-1H-benzo[d]imidazol-2(3H)-one (Intermediate 502-91): 5-Fluoro-N 1 -isopropylbenzene-1,2-diamine (501-91) (4.5 g, 26.8 mmol, 1.0 eq) was dissolved in dichloromethane (100 mL) and triethylamine (5.5 g, 53.6 mmol, 2.0 eq) was added. Under nitrogen protection, the reaction temperature was lowered to about 0° C. in an ice bath.
- Step 47c Preparation of 1-(2-chloropyrimidin-4-yl)-5-fluoro-3-isopropyl-1H-benzo[d]imidazol-2 (3H)-one (Intermediate 503-91): 6-Fluoro-1-isopropyl-1H-benzo [d]imidazol-2(3H)-one (502-91) (4.6 g, 23.7 mmol, 1.0 eq) and 2,4-dichloropyrimidine (5.3 g, 35.6 mmol, 1.5 eq) were dissolved in DMF (80 mL) and cesium carbonate (11.6 g, 35.6 mmol, 1.5 eq) was then added and the mixture was reacted at room temperature overnight.
- Step 47d Preparation of 1-(2-((4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxy-5-nitrophenyl)amino)pyrimidin-4-yl)-5-fluoro-3-isopropyl-1H-benzo[d]imidazol-2(3H)-one (Intermediate 505-A-91): 1-(2-Chloropyrimidin-4-yl)-5-fluoro-3-isopropyl-1H-benzo[d]imidazol-2(3H)-one (503-91) (2.8 g, 9.13 mmol, 1.0 eq) and 4-Fluoro-2-methoxy-5-nitroaniline (103) (1.87 g, 10.0 mmol, 1.1 eq) were dissolved in isopropyl alcohol (100 mL) and concentrated hydrochloric acid (2.0 mL) was then added dropwise and heated to 85° C.
- Step 47e Preparation of 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-5-fluoro-3-isopropyl-1H-benzo[d]imidazol-2(3H)-one (Intermediate 506-A-91): 1-(2-((4-((2-(Dimethylamino)ethyl)(methyl)amino)-2-methoxy-5-nitrophenyl)amino)pyrimidin-4-yl)-5-fluoro-3-isopropyl-1H-benzo[d]imidazol-2(3H)-one (505-A-91) (3.7 g, 6.88 mmol, 1.0 eq), iron powder (1.9 g, 34.4 mmol, 5.0 eq), ammonium chloride (1.8 g, 34.4 mmol, 3.0 eq)
- Step 47f Preparation of N-(2-((2-(dimethylamino)ethyl) (methyl)amino)-5-(4-(5-fluoro-3-isopropyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)pyrimidin-2-ylamino)-4-methoxyphenyl)acrylamide (Compound 91):
- Method 1 The reaction solution of 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-5-fluoro-3-isopropyl-1H-benzo[d]imidazol-2 (3H)-one (506-A-91) obtained above was cooled to about 0° C. with an ice-salt bath and to it 3-Chloropropionyl chloride (1.8 g, 13.76 mmol, 2.0 eq) in tetrahydrofuran (10 mL) was added dropwise. After addition, the reaction was stirred for 30 minutes while controlling the temperature around 0° C.
- the LCMS check indicated reaction completion and to the reaction water (100 mL) and dichloromethane (100 mL) was added and stirred for 10 minutes, filtered through celite in bush funnel and the filtrate was partitioned. The water phase was extracted with dichloromethane (50 mL). The organic phase was combined and the solvent was rotary evaporated to give a milk white residue which was slurried in ethyl acetate (50 mL), filtered and washed with ethyl acetate to give a white intermediate. The intermediate was dissolved in acetonitrile (50 mL), and then triethylamine (10 mL) was added and refluxed to react for 18 hours. The LCMS check indicated reaction completion.
- Example 48 Preparation of N-(5-(4-(3-cyclopropyl-5-fluoro-2-oxo-2,3-dihydrobenzo[d]imidazol-1-yl)pyrimidin-2-ylamino)-2-((2-(dimethylamino)ethyl)(methyl)amino)-4-methoxyphenyl)acrylamide (Compound 98) (Prepared According to Scheme 7)
- the synthetic method was similar to method 2 of step 47f in EXAMPLE 47, except that 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-5-fluoro-3-isopropyl-1H-benzo[d]imidazol-2(3H)-one (506-A-91) therein was replaced by 1-(2-(5-amino-4-((2-(dimethylamino)ethyl) (methyl)amino)-2-methoxyphenylamino)pyrimidin-4-yl)-3-cyclopropyl-5-fluoro-1H-benzo[d]imidazol-2(3H)-one (868 mg, 1.72 mmol, 1.0 eq) (506-A-98).
- N-(5-(4-(3-Cyclopropyl-5-fluoro-2-oxo-2,3-dihydrobenzo[d]imidazol-1-yl)pyrimidin-2-ylamino)-2-((2-(dimethylamino)ethyl)(methyl)amino)-4-methoxyphenyl)acrylamide was obtained as a yellow solid (300 mg, yield: 31.1%).
- the synthetic method was similar to method 2 of step 47f in EXAMPLE 47, except that 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-5-fluoro-3-isopropyl-1H-benzo[d]imidazol-2(3H)-one (506-A-91) therein was replaced by 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-5-chloro-3-cyclopropyl-1,3-dihydro-2H-benzo[d]imidazol-2-one (160 mg, 0.31 mmol) (506-A-99).
- N-(5-((4-(5-Chloro-3-cyclopropyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)pyrimidin-2-yl)amino)-2-((2-(dimethylamino)ethyl)(methyl)amino)-4-methoxyphenyl)acrylamide was obtained as a yellow solid (40 mg, yield: 23%).
- Example 50 Preparation of N-(5-((4-(5-cyano-3-cyclopropyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)pyrimidin-2-yl)amino)-2-((2-(dimethylamino)ethyl)(methyl)amino)-4-methoxyphenyl)acrylamide (Compound 101) (Prepared According to Scheme 7)
- the synthetic method was similar to method 2 of step 47f in EXAMPLE 47, except that 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-5-fluoro-3-isopropyl-1H-benzo[d]imidazol-2(3H)-one (506-A-91) therein was replaced by 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-3-cyclopropyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazole-5-carbonitrile (506-A-101) (200 mg, 0.39 mmol, 1.0 eq).
- N-(5-((4-(5-Cyano-3-cyclopropyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)pyrimidin-2-yl)amino)-2-((2-(dimethylamino)ethyl)(methyl)amino)-4-methoxyphenyl)acrylamide was obtained as a light yellow solid (130 mg, yield: 56%).
- Example 51 Preparation of N-(5-((4-(3-cyclopropyl-5-methoxy-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)pyrimidin-2-yl)amino)-2-((2-(dimethylamino)ethyl)(methyl)amino)-4-methoxyphenyl)acrylamide (Compound 102) (Prepared According to Scheme 7)
- the synthetic method was similar to method 2 of step 47f in EXAMPLE 47, except that 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-5-fluoro-3-isopropyl-1H-benzo[d]imidazol-2(3H)-one (506-A-91) therein was replaced by 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-3-cyclopropyl-5-methoxy-1,3-dihydro-2H-benzo[d]imidazol-2-one (506-A-102) (420 mg, 0.81 mmol, 1.0 eq).
- N-(5-((4-(3-Cyclopropyl-5-methoxy-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)pyrimidin-2-yl)amino)-2-((2-(dimethylamino)ethyl)(methyl)amino)-4-methoxyphenyl)acrylamide was obtained as beige solid (250 mg, yield: 54%).
- Example 52 Preparation of N-(5-(4-(3-(cyclopropylmethyl)-5-fluoro-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)pyrimidin-2-ylamino)-2-((2-(dimethylamino)ethyl)(methyl)amino)-4-methoxyphenyl)acrylamide (Compound 105) (Prepared According to Scheme 7)
- the synthetic method was similar to method 2 of step 47f in EXAMPLE 47, except that 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-5-fluoro-3-isopropyl-1H-benzo[d]imidazol-2(3H)-one (506-A-91) therein was replaced by 1-(2-(5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenylamino)pyrimidin-4-yl)-3-(cyclopropylmethyl)-5-fluoro-1H-benzo[d]imidazol-2(3H)-one (506-A-105) (520 mg, 1.0 mmol, 1.0 eq).
- the synthetic method was similar to method 2 of step 47f in EXAMPLE 47, except that 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-5-fluoro-3-isopropyl-1H-benzo[d]imidazol-2(3H)-one (506-A-91) therein was replaced by 1-(2-(5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methylphenyl amino)pyrimidin-4-yl)-3-methyl-1,3-dihydro-2H-benzo[d]imidazol-2-one (506-A-118) (72 mg, 0.16 mmol, 1.0 eq).
- Example 54 Preparation of N- ⁇ 2-[(2-dimethylamino-ethyl)-methyl-amino]-4-(2-methoxy-ethoxy)-5-[4-(3-methyl-2-oxo-2,3-dihydro-benzoimidazol-1-yl)-pyrimidin-2-ylamino]-phenyl ⁇ -acrylamide (Compound 120) (Prepared According to Scheme 7)
- the synthetic method was similar to that described in Example 24, except that 1-(2-((5-amino-4-((2-dimethylaminoethyl)(methyl)amino)-2-methoxy-phenyl)amino)-5-fluoro-4-yl)-3-methyl-1H-benzo[d]imidazol-2(3H)-one (506-A-55) therein was replaced by 1- ⁇ 2-[5-Amino-4-[(2-dimethylamino-ethyl)-methyl-amino]-2-(2-methoxy-ethoxy)-phenyl amino]-pyrimidin-4-yl ⁇ -3-methyl-1,3-dihydro-benzoimidazol-2-one (506-A-120) (250 mg, 0.49 mmol, 1.0 eq).
- the synthetic method was similar to that described in Example 6, except that N 4 -(4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-yl)-N 1 -(2-(dimethylamino)ethyl)-5-methoxy-N 1 -methylbenzene-1,2,4-triamine (403-A-5) therein was replaced by N 4 -(4-(5-chloro-1H-pyrrolo[3,2-b]pyridin-1-yl)pyrimidin-2-yl)-N 1 -(2-(dimethylamino)ethyl)-5-methoxy-N 1 -methylbenzene-1,2,4-triamine (200 mg, 0.43 mmol, 1.0 eq).
- N-(5-((4-(5-Chloro-1H-pyrrolo[3,2-b]pyridin-1-yl) pyrimidin-2-yl)amino)-2-((2-(dimethylamino)ethyl)(methyl)amino)-4-methoxyphenyl)acrylamide was obtained as a beige solid (140 mg, yield: 63%).
- the synthetic method was similar to method 2 of step 47f in EXAMPLE 47, except that 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-5-fluoro-3-isopropyl-1H-benzo[d]imidazol-2(3H)-one (506-A-91) therein was replaced by 1-(2-((3-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)phenyl)amino) pyrimidin-4-yl)-3-methyl-1,3-dihydro-2H-benzo[d]imidazol-2-one (506-A-125) (110 mg, 0.26 mmol, 1.0 eq).
- N-(2-((2-(Dimethylamino)ethyl)(methyl)amino)-5-((4-(3-methyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)pyrimidin-2-yl)amino)phenyl)acrylamide was obtained as a white solid (50 mg, 0.1 mmol, yield: 38.5%).
- Example 57 Preparation of N-(2-((2-(dimethylamino)ethyl)(methyl)amino)-5-((4-(3-isopropyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)pyrimidin-2-yl)amino)-4-methylphenyl)acrylamide (Compound 127) (Prepared According to Scheme 7)
- the synthetic method was similar to method 1 of step 47f in EXAMPLE 47, except that 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-5-fluoro-3-isopropyl-1H-benzo[d]imidazol-2(3H)-one (506-A-91) therein was replaced by 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methylphenyl)amino)pyrimidin-4-yl)-3-isopropyl-1,3-dihydro-2H-benzo[d]imidazol-2-one (506-A-127) (360 mg, 0.77 mmol, 1.0 eq).
- Example 58 Preparation of N-(2-((2-(dimethylamino)ethyl)(methyl)amino)-5-((4-(3-isopropyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)pyrimidin-2-yl)amino)phenyl)acrylamide (Compound 128) (Prepared According to Scheme 7)
- the synthetic method was similar to method 1 of step 47f in EXAMPLE 47, except that 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-5-fluoro-3-isopropyl-1H-benzo[d]imidazol-2(3H)-one (506-A-91) therein was replaced by 1-(2-((4-((2-(dimethylamino)ethyl)(methyl)amino)-3-aminophenyl)amino)pyrimidin-4-yl)-3-isopropyl-1H-benzo[d]imidazol-2(3H)-one (506-A-128) (650 mg, 1.33 mmol, 1.0 eq).
- N-(2-((2-(Dimethylamino)ethyl)(methyl)amino)-5-((4-(3-isopropyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)pyrimidin-2-yl)amino)phenyl)acrylamide was obtained as a white solid (390 mg, yield: 54%).
- the synthetic method was similar to method 1 of step 47f in EXAMPLE 47, except that 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-5-fluoro-3-isopropyl-1H-benzo[d]imidazol-2(3H)-one (506-A-91) therein was replaced by 1-(2-((4-((2-(dimethylamino)ethyl)(methyl)amino)-2-isopropyl-5-aminophenyl)amino)pyrimidin-4-yl)-3-methyl-1,3-dihydro-2H-benzo[d]imidazol-2-one (506-A-132) (500 mg, 0.99 mmol, 1.0 eq).
- Example 60 Preparation of N-(2-((2-(dimethylamino)ethyl) (methyl)amino)-5-((4-(3-isopropyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)-5-methoxypyrimidin-2-yl)amino)-4-methoxyphenyl)acrylamide (Compound 133) (Prepared According to Scheme 7)
- the synthetic method was similar to method 1 of step 47f in EXAMPLE 47, except that 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-5-fluoro-3-isopropyl-1H-benzo[d]imidazol-2(3H)-one (506-A-91) therein was replaced by 1-(2-((4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxy-5-aminophenyl)amino)-5-methoxypyrimidin-4-yl)-3-isopropyl-1H-benzo[d]imidazol-2(3H)-one (506-A-133) (660 mg, 1.2 mmol, 1.0 eq).
- N-(2-((2-(Dimethylamino)ethyl) (methyl)amino)-5-((4-(3-isopropyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)-5-methoxypyrimidin-2-yl)amino)-4-methoxyphenyl)acrylamide was obtained as a white solid (310 mg, yield: 42.7%).
- Example 61 Preparation of N-(5-((5-(dimethylamino)-4-(3-isopropyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)pyrimidin-2-yl)amino)-2-((2-(dimethylamino)ethyl)(methyl)amino)-4-methoxyphenyl)acrylamide (Compound 135) (Prepared According to Scheme 7)
- the synthetic method was similar to method 1 of step 47f in EXAMPLE 47, except that 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-5-fluoro-3-isopropyl-1H-benzo[d]imidazol-2(3H)-one (506-A-91) therein was replaced by 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl) amino)-5-(dimethylamino)pyrimidin-4-yl)-3-isopropyl-1,3-dihydro-2H-benzo[d]imidazol-2-one.
- N-(5-((5-(Dimethylamino)-4-(3-isopropyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)pyrimidin-2-yl)amino)-2-((2-(dimethylamino)ethyl)(methyl)amino)-4-methoxyphenyl)acrylamide was obtained as a white solid (90 mg, yield: 13.9%).
- Example 62 Preparation of N-(2-((2-(dimethylamino) ethyl)(methyl)amino)-5-((4-(3-isopropyl-5-methoxy-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)pyrimidin-2-yl)amino)-4-methoxyphenyl)acrylamide (Compound 138) (Prepared According to Scheme 7)
- the synthetic method was similar to method 1 of step 47f in EXAMPLE 47, except that 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-5-fluoro-3-isopropyl-1H-benzo[d]imidazol-2(3H)-one (506-A-91) therein was replaced by 1-(2-((4-((2-(dimethylamino)ethyl)(methyl) amino)-2-methoxy-5-aminophenyl)amino)pyrimidin-4-yl)-3-isopropyl-5-methoxy-1H-benzo[d]imidazol-2(3H)-one (506-A-138) (1.3 g, 2.36 mmol, 1.0 eq).
- N-(2-((2-(Dimethylamino)ethyl)(methyl)amino)-5-((4-(3-isopropyl-5-methoxy-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)pyrimidin-2-yl)amino)-4-methoxyphenyl)acrylamide was obtained as a white solid (940 mg, yield: 65.7%).
- Example 63 Preparation of N-(2-((2-(dimethylamino) ethyl)(methyl)amino)-5-((4-(5-hydroxy-3-isopropyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)pyrimidin-2-yl)amino)-4-methoxyphenyl)acrylamide (Compound 139) (Prepared According to Scheme 7)
- the synthetic method was similar to method 1 of step 47f in EXAMPLE 47, except that 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-5-fluoro-3-isopropyl-1H-benzo[d]imidazol-2(3H)-one (506-A-91) therein was replaced by 1-(2-((4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxy-5-aminophenyl)amino)pyrimidin-4-yl)-5-hydroxy-3-isopropyl-1H-benzo[d]imidazol-2(3H)-one (35 mg, 0.065 mmol, 1.0 eq).
- N-(2-((2-(Dimethylamino)ethyl)(methyl)amino)-5-((4-(5-hydroxy-3-isopropyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)pyrimidin-2-yl)amino)-4-methoxyphenyl)acrylamide was obtained as a white solid (20 mg, yield: 54.8%).
- the assay procedure is as follows.
- the object compound was dissolved in DMSO, and then diluted by a kinase buffer (50 mM HEPES-pH7.5, 0.0015% Brij-35, 10 mM MgCl 2 , 2 mM DTT).
- a kinase buffer 50 mM HEPES-pH7.5, 0.0015% Brij-35, 10 mM MgCl 2 , 2 mM DTT.
- 5 ⁇ l of the compound dissolved in 10% DMSO at a concentration of 5-fold of the final reaction concentration was added to a 384 well plate.
- 5 ⁇ l of 10% DMSO was used in a no-compound control well, while 5 ⁇ l of a kinase buffer was used in a no-enzyme activity control well.
- 10 ⁇ of 2.5-fold diluted EGFR T790M L858R Invitrogen, Cat. No PR8911A, Lot.
- maximum refers to the conversion rate of the DMSO no-compound control well
- min refers to the conversion rate of the no-enzyme activity control well.
- a curve was obtained by plotting the inhibitory rate as a function of the compound concentration.
- the XLFit excel add-in version 4.3.1 software was used to fit the curve and calculate the IC50.
- Inhibitory rate % (max ⁇ conversion rate)/(max ⁇ min) ⁇ 100.
- the assay procedure is as follows.
- the object compound was dissolved in DMSO, and then diluted by a kinase buffer (50 mM HEPES-pH7.5, 0.0015% Brij-35, 10 mM MgCl 2 , 2 mM DTT).
- a kinase buffer 50 mM HEPES-pH7.5, 0.0015% Brij-35, 10 mM MgCl 2 , 2 mM DTT.
- 5 ⁇ l of the compound dissolved in 10% DMSO at a concentration of 5-fold of the final reaction concentration was added to a 384 well plate.
- 50 of 10% DMSO was used in a no-compound control well, while 5 ⁇ l of a kinase buffer was used in a no-enzyme activity control well.
- 10 ⁇ of 2.5-fold diluted EGFR T790M Invitrogen, Cat. No PR8052A, Lot.
- maximum refers to the conversion rate of the DMSO no-compound control well
- min refers to the conversion rate of the no-enzyme activity control well.
- a curve was obtained by plotting the inhibitory rate as a function of the compound concentration.
- the XLFit excel add-in version 4.3.1 software was used to fit the curve and calculate the IC50.
- Inhibitory rate % (max ⁇ conversion rate)/(max ⁇ min) ⁇ 100.
- these compounds can selectively inhibit the T790M EGFR, including single-point mutation T790M and double-point mutation (such as T790M/L858R).
- ATP adenosine triphosphate
- Human non-small-cell lung cancer tumor cell line H1975 carries L858R and T790M epidermal growth factor receptor (EGFR) double mutation.
- Human colon cancer cell line LOVO and human non-small-cell lung cancer H358 express wild-type EGFR.
- Human non-small-cell lung cancer cell line HCC827 carries deletion mutation in exon 19 (ex19del). Those cell lines are purchased from Shanghai Fudan IBS Cell Resource Center and American Tissue Culture Collection (ATCC).
- the assay procedure is as follows.
- the cells in a cell culture plate were digested with a pancreatic enzyme, re-suspended in a DPBS culture medium, and had the cell density counted by Scepter automated cytometer (Millipore # PHCC00000).
- the cells were diluted to a solution of 44,000 cells per ml.
- the cell solution with adjusted density was added to the cell assay plate at 90 microliters per well.
- the plate was placed in an incubator with 5% CO 2 at 37° C. for 24 hours of incubation, and then added with different concentrations of subject compounds.
- the cells were incubated for 72 hours with the compounds in presence of 10% bovine serum.
- the content of ATP was determined by a CellTiter-Glo® Luminescent Cell Viability Assay kit (see the manufacturer's instruction for details) to evaluate cell-growth inhibition.
- AZD9291 and CO-1686 are positive control drugs.
- these compounds have strong inhibitory activity on cell proliferation of L858R/T790M EGFR mutation cells (such as H1975), and also have strong inhibiting activity on HCC827 with deletion mutation in exon 19.
- these compounds have weak inhibitory activity on cell proliferation of wild-type EGFR cell (such as LOVO and H358), thus having high selectivity.
- mice Male SD rats weighing 250-300 g, or male beagles weighing 9-10 kg, were fasted overnight before the experiment.
- the object compounds were dissolved in 30% sulfobutylated beta-cyclodextrin (SBE- ⁇ -CD), and orally administrated to the rats at a dose of 20 mg/kg or to the beagles at a dose of 5 mg/kg.
- Blood samples were taken at 15 minutes, 30 minutes, 1 hour, 2 hours, 3 hours, 4 hours, 6 hours, 8 hours and 24 hours after administration.
- 0.3 ml of blood was collected at every time point, placed in a centrifuge tube containing K2-EDTA (ethylenediamine tetraacetic acid dipotassium) and centrifuged (2,000 g, 10 minutes, 4° C.) to collect plasma, which was then stored in an ultra cold storage freezer at ⁇ 80° C. 50 ⁇ L of plasma sample was mixed with 5 ⁇ L of internal standard (IS), and then extracted with ethyl acetate. After vacuum drying, the residue was re-dissolved in acetonitrile. The sample was filtered and injected into LC-MS/MS for analysis.
- K2-EDTA ethylenediamine tetraacetic acid dipotassium
- the compounds 20, 50, 62, 91 and 124 provided by the present disclosure were well absorbed, with high blood exposure dose effect in rats after oral administration.
- the T max of these compounds was 1.0 to 3.7 hours, the half time (T 1/2 ) was 3.0 to 6.8 hours, and the C max was 84. ⁇ 349.7 ng/ml (table 3).
- the C max of compound 50 and compound 90 in beagles after oral administration was 428.0 and 109.2 ng/ml, respectively, with AUC0-24 of 1423.4 and 785.6 hr ⁇ ng/ml, respectively (Table 4).
- T max refers to time to reach peaks
- C max refers to maximum blood plasma concentrations
- T 1/2 refers to half-life
- AUC 0-24 refers to area under the concentration-time curve from 0 to 24 hours
- AUC inf refers to area under the concentration-time curve from 0 to infinity.
- Balb/C nude mice were purchased from Beijing Vital River Laboratory Animal Technology Co., Ltd., and housed in SPF animal room.
- the human non-small-cell lung cancer cell line H1975 in a culture dish was collected by trypsin-EDTA (0.25% trypsin, 1 mM EDTA), and then washed with a serum-free PBS solution. Lastly, the cells were implanted after diluted in a serum-free medium. Only the single cell suspension with a survival rate over 90% (Trypan blue rejection) can be used for injection.
- tumor volume (length ⁇ width 2 )/2.
- the animals were divided into 6 oral administration groups, that is, excipient control group (0 hour) and groups of 30 minutes, 2 hours, 4 hours, 8 hours, and 24 hours after administration (3 animals at each time point).
- the compound 91 was dissolved in 30% sulfobutylated beta-cyclodextrin (SBE- ⁇ -CD) and 1 N HCl (pH 3-4) at a concentration of 3 mg/ml, and gavage administration at a dose of 30 mg/kg was performed.
- the mice were euthanized by CO 2 at the above time points.
- Pharmacokinetic analysis was performed as below: the plasma sample and tumor tissue homogenate sample were mixed with 5 microliter of internal standard (IS), and then extracted with ethyl acetate. After vacuum drying, the residue was re-dissolved in acetonitrile. The sample was filtered and injected into LC-MS/MS for analysis.
- IS internal standard
- the compound 91 was absorbed quickly after oral administration.
- the plasma peak time and the tumor tissue peak time were 0.5 hour and 4 hours, respectively.
- the C max values were 1723.3 ng/ml and 868.0 ng/ml, respectively.
- the AUC 0-24h (6434.6 ng/ml*hr) of tumor tissue and AUC 0-24h (5095.6 ng/ml*hr) of plasma were similar.
- the animals were divided into 4 oral administration groups, that is, excipient control group (0 hour) and groups of 2 hours, 4 hours, and 8 hours after administration (3 to 4 animals at each time point).
- the compound 91 was dissolved in 30% sulfobutylated beta-cyclodextrin (SBE- ⁇ -CD) and 1N HCl (pH 3-4) at a concentration of 3 mg/ml.
- Gavage administration at a dose of 30 mg/kg was performed.
- the mice were euthanized by CO 2 at the above time points.
- the tumor tissues were collected, immediately cooled in liquid nitrogen, and then stored under ⁇ 80° C.
- tumor tissue was homogenized in 300 ⁇ l of protein extract (RIPA, CST, #9806).
- a phosphatase inhibitor (1:100 v/v, Protease Inhibitor Cocktail, sigma, # P8340) and 100 mM/L PMSF (1:100 v/v) were also added to the protein extract.
- the tissue lysate was centrifuged at 12,000 rpm for 15 minutes at 4° C. Then 200 ⁇ l of supernatant was collected and stored at ⁇ 80° C.
- the protein concentration was determined by Bradford method (Beyotime, # P0006).
- the membrane was incubated with a fluorescent secondary antibody IRDye@800CW Goat (polyclonal) Anti-Mouse lgG (H+L), Highly Cross Adsorbed (LI-COR, 926-32210) and IRDye@680CW Goat (polyclonal) Anti-Rabbit lgG (H+L), and Highly Cross Adsorbed (LI-COR, #926-68071) at room temperature in dark for 2 hours, and washed again under the same wash condition as described above. Lastly, the membrane was placed in LI-COR Odyssey infrared fluorescent scanning imaging system for imaging and detection.
- This experiment studied the inhibition of tumor growth in H1975 xenograft tumor model by the compounds 20, 50, 91, and 118.
- These compounds were dissolved in 30% sulfobutylated beta-cyclodextrin (SBE- ⁇ -CD) and 1N HCl (pH 3-4).
- Gavage administration at a dose of 10 mg/kg was performed once a day for 16 consecutive days.
- oral administration of compounds 20, 50, 91, and 118 at a dose of 30 mg/kg qd can inhibit the growth of H1975 xenograft tumor, causing tumor regression.
- the tumor substantially disappeared (the T/C values were ⁇ 97% and ⁇ 95%, respectively; P ⁇ 0.001).
- the weight of each administration group had no significantly loss relative to that before the administration.
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Abstract
Description
- The present disclosure relates to the technical field of pharmaceutical chemistry, and especially relates to a 2,4-bis(nitrogen-containing group)-substituted pyrimidine compound and a preparation method and use thereof.
- The epidermal growth factor receptor (EGFR) family of receptor tyrosine kinases (TKs) includes EGFR (HER1), HER2 (ErbB2), HER3 (ErbB3) and HER4 (ErbB4) that participate in regulation of many developmental, metabolic and physiological processes. The activation of EGFR receptor induces phosphorylation of the intracellular domain of EGFR and thus leads to activation of the Ras/mitogen-activated protein kinase signal pathways, the PI3K/AKT pathways, signal transduction pathways of signal transduction and transcription activation factors (J ClinOncol 2008; 26:1742-1751).
- The mutation of EGFR genes and increased expression of EGFR proteins in tumor cells lead to EGFR TK activation, facilitating the survival, proliferation, invasion and metastasis of tumor cells. The epidermal growth factor receptor tyrosine kinase inhibitors (TKIs), such as Erlotinib, Gefitinib and Icotinib are reversible competitive inhibitors which can bind competitively to a receptor Adenosine triphosphate (ATP) binding site of a tyrosine kinase domain. Those drugs have significant curative effects for patents of non-small-cell lung cancer (NSCLC) with EGFR gene activating mutation. The sequence analysis of EGFR genes indicated that 90% of EGFR activating mutations are deletions of
exon 19 and L858R mutation of exon 21 (J ClinOncol 2008; 26:1742-1751). There is a response rate of approximately 70% to Erlotinib and Gefitinib in NSCLC patients with EGFR activating mutations (Clin Cancer Res 2006; 12:3908-3914). The percentage of NSCLC with EGFR activating mutations is 10-15% in westerners and 30-40% in Asians (Nat Rev Cancer 2010; 10:760-774; Oncogene 2009; 28 (Suppl 1): S24-S31.). The first generation of reversible and competitive EGFR inhibitors which may cause side effects such as rash and diarrhea due to their simultaneous inhibition of skin and gastrointestinal wild-type EGFR (Nat Clin Pract Oncol 2008; 5:268-278; CurrOncol 2011; 18: 126-138). - The NSCLC patients with EGFR activating mutations, after being administrated with Gefitinib, Erlotinib or Icotinib for 6-14 months, had worsened conditions (N Engl J Med 2010; 362:2380-2388; Lancet Oncol 2012; 13:239-246). 50%-60% of acquired drug-resistant patients had drug resistance mutation at T790M (the second point mutation). The amino acid at position 790 in
exon 20 of the wild-type EGFR gene is threonine (T), while the T790M mutation is caused by substitution of threonine (T) by a bulkier methionine (M), at position 790 inexon 20 of the EGFR gene. The T790M mutation changes the affinity of ATP and as a result, the first-generation EGFR-TKI (tyrosine kinases inhibitor) cannot inhibit the signal effectively, which leads to drug resistance (N Eng J Med 2005; 352:786-792; PLoS Med 2005; 2:e73; Oncogene 2009; 28 (Suppl 1): S24-S31.). - The second-generation EGFR inhibitors, such as Dacomitinib, Afatinib, Neratinib, XL647, and the like, are irreversible EGFR-TKIs, capable of non-specific inhibition of wild-type EGFR, L858R activating mutation and T790M drug resistance mutation. Although those compounds are active against EGFR T790M mutation, the drug resistance due to T790M mutation is an unsolved problem in the clinical stage (Lancet Oncol 2012; 13:528-538; J Clin Oncol 2013; 31:3335-3341). Besides, because they inhibit wild-type EGFR non-selectively, dose-limiting toxicity (DLT) is caused, preventing those drugs to reach effective inhibitory concentration of T790M in vivo.
- The third-generation EGFR inhibitor can inhibit T790M resistance mutation selectively and has a minimal inhibitory effect on wild-type EGFR. Rociletinib (CO-1686), AZD9291, HM61713 and the like are all selective irreversible T790 EGFR inhibitors (J Med Chem 2014; 57:8249-8267; Cancer Discov 2014; 4:1046-1061; Cancer Discov 2013; 3:1404-1405; Mol Cancer Ther 2014; 13:1468-1479). Osimertinib (AZD9291) and Rociletinib (CO-1686) 1, when clinically administrated to EGFR-TKI drug resistant patients caused by T790M, had shown good safety and anti-tumor activity (N Engl J Med. 2015; 372:1689-1699).
- Because the third-generation EGFR inhibitors can inhibit EGFR mutation selectively with a minimal inhibitory effect on wild-type EGFR, they have shown strong anti-tumor activity in pre-clinical research with an obvious reduction of dose-limiting toxicity (DLT), such as rash and diarrhea toxic effects, compared with the first-generation and the second-generation EGFR inhibitors.
- In view of the above, it is necessary to provide a group of compounds, which can selectively inhibit T790M EGFR, including T790M single-point mutation and double-point mutation (such as L858R/T790M and ex19del/T790M) to address the above problem. Such compounds also have inhibitory activity on EGFR single-point activating mutation, such as L858R and ex19del, and have weak inhibitory effect on the wild-type EGFR. In other words, such compounds have good selectivity without causing the problem of DLT.
- A 2,4-bis(nitrogen-containing group)-substituted pyrimidine compound of formula I or a pharmaceutically acceptable salt or a stereoisomer thereof is provided herein:
- wherein the dash line between X1 and X2 refers to an optional single bond or double bond between X1 and X2;
- R1 is selected from the group consisting of H, C1-C6 alkyl, C3-C6 cycloalkyl, C3-C6 cycloalkyl-substituted methyl, halo-substituted C1-C4 alkyl, hydroxyl-substituted C1-C4 alkyl, C1-C3 alkoxy-substituted C1-C4 alkyl, amino-substituted C1-C4 alkyl, C1-C3 alkylamino-substituted C1-C4 alkyl, halogen, nitro, hydroxyl, C1-C6 alkoxy, C1-C6 alkylthio, C1-C6 sulfoxide, C1-C6 sulfone, cyano, amino, C1-C3 alkyl-substituted amino, ester, acyl, amido, and carboxyl;
- R2 and R3 are each independently selected from the group consisting of H and C1-C6 alkyl;
- R4 is selected from the group consisting of H, OH, C1-C6 alkyl, C1-C6 alkoxy, hydroxyl-substituted C1-C4 alkyl, and C1-C3 alkoxy-substituted C1-C4 alkoxy;
- R5 is selected from the group consisting of the groups below:
- R15 is selected from the group consisting of H and C1-C6 alkyl;
- R16 and R17 are each independently selected from the group consisting of H, C1-C6 alkyl, and C1-C6 alkoxy;
- Z is selected from the group consisting of C, N, and O, and when Z is O, R8 does not exist;
- m is selected from 0, 1, or 2;
- n is selected from 1, 2, or 3;
- p is selected from 1, 2, 3, 4, 5, or 6;
- R6, R7, and R8 are each independently selected from the group consisting of H, C1-C6 alkyl, C3-C6 cycloalkyl, C3-C6 cycloalkyl-substituted methyl, benzyl, phenyl, acyl, methylsulfonyl, halo-substituted C1-C4 alkyl, hydroxyl-substituted C1-C4 alkyl, C1-C3 alkoxy-substituted C1-C4 alkyl, amino-substituted C1-C4 alkyl, C1-C3 alkylamino-substituted C1-C4 alkyl, amino, C1-C3 alkyl-substituted amino, hydroxyl, and C1-C6 alkoxy;
- X1 is selected from the group consisting of N, C═O, and C—R9;
- R9 is selected from the group consisting of H, C1-C6 alkyl, halo-substituted C1-C6 alkyl, C1-C6 alkyl containing O, N, or S heteroatoms, halogen, cyano, and amino;
- X2 is selected from the group consisting of N, N—R10, and C—R10;
- R10 is selected from the group consisting of H, halogen, C1-C6 alkyl, C2-C6 alkenyl, C2-C6 alkynyl, C3-C6 cycloalkyl, C3-C6 cycloalkyl methyl, halo-substituted C1-C6 alkyl, and C1-C6 alkyl containing O, N, or S heteroatoms;
- X3, X4, X5, and X6 are each independently selected from the group consisting of N, and C—R11;
- R11 is selected from the group consisting of H, C1-C6 alkyl, hydroxyl-substituted C1-C4 alkoxy, C1-C3 alkoxy-substituted C1-C4 alkoxy, C3-C6 cycloalkyl, C3-C6 cycloalkyl methyl, halo-substituted C1-C4 alkyl, hydroxyl-substituted C1-C4 alkyl, C1-C3 alkoxy-substituted C1-C4 alkyl; amino-substituted C1-C4 alkyl, C1-C3 alkylamino-substituted C1-C4 alkyl, halogen, nitro, hydroxyl, C1-C6 alkoxy, C1-C6 alkylthio, C1-C6 sulfoxide, C1-C6 sulfone, cyano, amino, C1-C3 alkyl-substituted amino, ester, acyl, amido, C1-C3 alkyl-substituted amido, and carboxyl;
- G is selected from the group consisting of the following groups:
- R12 and R13 are each independently selected from the group consisting of H and C1-C6 alkyl;
- R14 is selected from the group consisting of H, C1-C6 alkyl, C1-C3 alkoxy-substituted C1-C4 alkyl, amino-substituted C1-C4 alkyl; C1-C3 alkylamino-substituted C1-C4 alkyl, and heterocycle-substituted C1-C4 alkyl; and
- if R1 is selected from the group consisting of H, halogen, and cyano, R4 is C1-C6 alkoxy, G is
- and R10 is selected from the group consisting of H, C1-C6 alkyl, C3-C6 alkoxy, and halo-substituted C1-C6 alkyl, then Rut is not selected from any one in the group consisting of H, C1-C6 alkyl, C3-C6 cycloalkyl, halo-substituted C1-C4 alkyl, o C1-C6 sulfone; or
- if R1 is selected from the group consisting of H, halogen, and cyano, R4 is C1-C6 alkoxy, G is
- and R11 is selected from the group consisting of H, C1-C6 alkyl, C3-C6 cycloalkyl, halo-substituted C1-C4 alkyl, and C1-C6 sulfone, then R10 is not selected from any one in the group consisting of H, C1-C6 alkyl, C3-C6 cycloalkyl, and halogen-substituted C1-C6 alkyl.
- In some embodiments, the compound disclosed herein is selected from the group consisting of compounds of formula II and formula III:
- wherein X1 is selected from the group consisting of N and C—R9;
- X2, X3, X4, X5, and X6 are each as previously described; and
- R1, R2, R3, R4, R5, R9, and G are each defined as previously described.
- In some embodiments, X3, X5, and X6 are each independently selected from the group consisting of N and CH, X4 is C—R11, and R11 is as previously described.
- In some embodiments, the compound disclosed herein is selected from the group consisting of compounds of formula II below:
- wherein X2 is N—R10;
- R10 is selected from the group consisting of C1-C6 alkyl, C2-C6 alkenyl, C3-C6 cycloalkyl, and C3-C6 cycloalkylmethyl;
- X3, X5, and X6 are each independently CH;
- X4 is C—R11;
- R11 is selected from the group consisting of C1-C6 alkoxy, halogen, and cyano; and
- R1, R2, R3, R4, R5, and G are each as previously described.
- In some embodiments, the compound disclosed herein is selected from the group consisting of compounds of formula III
- wherein X1 and X2 are each CH;
- X3 is N;
- X4 is as described in
claim 1; - X5 and X6 are each CH; and
- R1, R2, R3, R4, R5, R9, and G are each as previously described.
- In some embodiments, X1 and X2 are each independently selected from the group consisting of C and N—R10;
- R10 is selected from the group consisting of C1-C6 alkyl, C2-C6 alkenyl, C3-C6 cycloalkyl, and C3-C6 cycloalkylmethyl;
- X3 is selected from the group consisting of CH and N;
- X5, X6 are each independently CH;
- X4 is C—R11;
- R11 is selected from the group consisting of C1-C6 alkoxy, halogen, and cyano;
- R1, R2, and R3 are each H;
- R4 is a methoxy group;
- R5 is the group below:
- and
- G is the group below:
- In some embodiments, R1 is selected from the group consisting of H, F, Cl, Br, methyl, trifluoromethyl, methoxy, cyano, hydroxyl, dimethylamino, and amido group;
- R2 and R3 are each H;
- R4 is selected from the group consisting of H, methoxy, ethoxy, methyl, ethyl, OH, and methoxyethoxy;
- R12 and R13 are each H;
- R14 is selected from the group consisting of H, C1-C6 alkyl, C1-C3 alkoxy-substituted C1-C4 alkyl, amino-substituted C1-C4 alkyl, C1-C3 alkylamino-substituted C1-C4 alkyl, and heterocycle-substituted C1-C4 alkyl.
- In some embodiments, R5 is selected from the group consisting of the groups below:
- The present disclosure also discloses a preparation method of the 2,4-bis(nitrogen-containing group)-substituted pyrimidine compound as described above, the preparation method comprising the following steps:
- reducing a nitro group of an intermediate 101 to obtain an intermediate 102; reacting the intermediate 102 with a nitrate in an acidic condition to obtain an intermediate 103; substituting an amino group of the intermediate 103 by bromo to obtain an intermediate 104, and then reacting the intermediate 104 with an intermediate which has an R5 with N connected to H to obtain an intermediate 105 for later use; or, instead, reacting the intermediate 103 with an intermediate which has an R5 with N connected to H to obtain an intermediate 106 for later use; wherein the reaction scheme is as shown below:
- reacting an intermediate 201 with an intermediate 202, 203 or 301 to obtain an intermediate 204, 205, or 302, respectively; substituting a chloride of the intermediate 204 by ammonium hydroxide to obtain an intermediate 205; oxidizing a sulfur of the intermediate 302 to obtain an intermediate 303; reacting the intermediate 303 with ammonium hydroxide to obtain the intermediate 205 for later use; wherein the reaction scheme is as shown below:
- reacting the intermediate 204 with the intermediate 103 to obtain an intermediate 401, and then reacting the intermediate 401 with a compound which has an R5 with N connected to H to obtain an intermediate 402; or, instead, reacting the intermediate 204 with the intermediate 106 to obtain the intermediate 402; or instead, reacting the intermediate 205 with the intermediate 105 to obtain the intermediate 402, then reducing a nitro group of the intermediate 402 to obtain an intermediate 403 for later use; wherein the reaction scheme is as shown below:
- and
- reacting the intermediate 403 with an intermediate containing a G group to obtain a target compound, wherein the reaction scheme is as shown below:
- The present disclosure also discloses a preparation method of the aforementioned 2,4-bis(nitrogen-containing group)-substituted pyrimidine compound, the preparation method comprising the following steps:
- reducing a nitro group of an intermediate 101 to obtain an intermediate 102; reacting the intermediate 102 with a nitrate in an acidic condition to obtain an intermediate 103; substituting an amino group of the intermediate 103 by bromo to obtain an intermediate 104, and then reacting the intermediate 104 with an intermediate which has an R5 with N connected to H to obtain an intermediate 105 for later use; or, instead, reacting the intermediate 103 with a compound which has an R5 with N connected to H to obtain an intermediate 106 for later use; wherein reaction scheme is as shown below:
- subjecting an intermediate 501 to a ring-closure reaction in presence of N,N′-carbonyl diimidazole (CDI) to produce an intermediate 502; reacting the intermediate 502 with the intermediate 202 to obtain an intermediate 503, then substituting a chloride of the intermediate 503 by amino of ammonium hydroxide to produce an intermediate 504, and reacting the intermediate 504 with the intermediate 105 to obtain an intermediate 505; or instead, reacting the intermediate 503 with the intermediate 106 to obtain an intermediate 505; or instead, reacting the intermediate 503 with the intermediate 103, and then reacting a fluro of the product thereof with the amino-containing R5 to obtain the intermediate 505; and, reducing the nitro group of the intermediate 505 to obtain an intermediate 506 for later use; wherein the reaction scheme is as shown below:
- and
- reacting the intermediate 506 with an intermediate containing a G group to obtain a target compound, wherein the reaction scheme is as shown below:
- The present disclosure also discloses use of the aforementioned 2,4-bis(nitrogen-containing group)-substituted pyrimidine compound or a pharmaceutically acceptable salt or a stereoisomer thereof in preparation of medicaments for treatment or prevention of a tumor.
- In some embodiments, the tumor is a solid tumor.
- In some embodiments, the tumor is a malignant tumor with EGFR gene mutation.
- In some embodiments, the tumor is non-small-cell lung cancer (NSCLC) with T790M EGFR mutation.
- The present disclosure also discloses a pharmaceutical composition for treatment or prevention of a tumor, the pharmaceutical composition comprising the 2,4-bis(nitrogen-containing group)-substituted pyrimidine compound or a pharmaceutically acceptable salt or a stereoisomer thereof as an active component, and a pharmaceutically acceptable carrier.
- In some embodiments, the tumor is non-small-cell lung cancer (NSCLC) with T790M EGFR mutation.
- Compared with the prior art, the present disclosure has following advantageous effects.
- The present disclosure provides 2,4-bis(nitrogen-containing group)-substituted pyrimidine compounds which are a series of novel compounds that can selectively inhibit T790M EGFR, including T790M single-point mutation and double-point mutation (such as L858R/T790M and ex19del/T790M). At the same time, such compounds also have inhibitory activity on EGFR single-point activating mutation, such as L858R and ex19del.
- Furthermore, such compounds not only have strong antiproliferation activity on L858R/T790M EGFR mutation cells (such as H1975), but also have weak antiproliferation activity on wild-type EGFR cells (such as LOVO and H358), therefore providing high selectivity.
- The 2,4-bis(nitrogen-containing group)-substituted pyrimidine compounds herein have the potential for use as medication to treat a malignant tumor with EGFR mutation, especially NSCLC with T790M EGFR mutation.
-
FIG. 1 shows a graph of the drug concentration in plasma and tumor tissues as a function of time after oral administration (30 mg/kg) of thecompound 91 in the H1975 tumor xenograft mice, according to an Experimental Example. -
FIG. 2 shows inhibition of EGFR phosphorylation in a T790 mutant H1975 tumor xenograft by oral administration of thecompound 91, according to an Experimental Example. -
FIG. 3 shows a graph of dose-effect relationship of inhibition of tumor growth (variation in tumor volume) bycompounds -
FIG. 4 shows a graph of dose-effect relationship of dose-dependent inhibition of H1975 xenograft tumor with T790 mutation by the compound 50, according to an Experimental Example. -
FIG. 5 shows a graph of dose-effect relationship of dose-dependent inhibition of H1975 xenograft tumor with T790 mutation by thecompound 91, according to an Experimental Example. - The present disclosure will be further illustrated with reference to the specific examples and accompanying drawings, but should not be taken as limiting the disclosure in any way.
- The term “alkyl”, as used herein, refers to a linear or branched-chain saturated aliphatic hydrocarbon group having a specified number of carbon atoms. For example, the “C1-C6” as in “C1-C6 alkyl” is defined as the group comprising a linear or branched chain having 1, 2, 3, 4, 5, or 6 carbon atom(s). For example, “C1-C6 alkyl” specifically includes methyl, ethyl, propyl, isopropyl, n-butyl, tert-butyl, isobutyl, pentyl, and hexyl.
- The term “cycloalkyl” refers to a monocyclic saturated aliphatic hydrocarbon group having a specified number of carbon atoms. For example, “cycloalkyl” includes cyclopropyl, methyl-cyclopropyl, 2,2-dimethyl-cyclobutyl, 2-ethyl-cyclopentyl, cyclohexyl, and the like.
- The term “alkoxy” refers to a group with an alkyl directly connected to oxygen, such as methoxy, ethoxy and so on.
- The term “alkylthio” refers to a group with an alky directly connected to sulfur.
- The term “C1-C3 alkylamino-substituted C1-C4 alkyl” refers to a group with an alkyl containing 1, 2, or 3 carbon atom(s) connected with a nitrogen atom which in turn is connected with an alkyl containing 1, 2, 3, or 4 carbon atom(s), such as methylamino methyl, methylamino ethyl, dimethylamino methyl and so on.
- The term “heterocycle” refers to a saturated cycloalkyl or heteroaryl containing heteroatoms, wherein, the heteroatoms can be selected from the group consisting of N, S, O, and any oxidized forms of N, S, and P, preferably, a saturated heterocycloalkyl containing N, such as piperidine and so on.
- The term “substituted” refers to the replacement of hydrogen in a given structure by a specified substituent group.
- The present disclosure comprises compounds of formula I-III in their free fir's, and also comprises pharmaceutically acceptable salts and stereoisomers thereof. The pharmaceutically acceptable salts of the present disclosure can be synthesized from the compound of the present disclosure which contains a basic or acidic moiety by conventional chemical methods. Generally, salts of basic compounds are prepared either by ion exchange chromatography or by reacting the free base with a stoichiometric amount or an excessive amount of an inorganic or organic acid in the form of a required salt in a suitable solvent or a combination of solvents. Similarly, salts of acidic compounds are formed by reactions with an appropriate inorganic or organic base.
- Accordingly, the pharmaceutically acceptable salts of the compounds of this disclosure include conventional non-toxic salts of the compounds of this disclosure as formed by reacting a basic compound of this disclosure with an inorganic or organic acid. For example, the conventional non-toxic salts include the salts prepared from inorganic acids, such as hydrochloric acid, hydrobromic acid, sulfuric acid, sulfamic acid, phosphoric acid, nitric acid, and the like, and also include the salts prepared from organic acids, such as acetic acid, propionic acid, succinic acid, glycolic acid, stearic acid, lactic acid, malic acid, tartaric acid, citric acid, ascorbic acid, pamoic acid, maleic acid, hydroxymaleic acid, toluylic acid, glutamic acid, benzoic acid, salicylic acid, para-aminobenzenesulfonic acid, 2-acetoxy-benzoic acid, fumaric acid, toluenesulfonic acid, methanesulphonic acid, ethane disulfonic acid, oxalic acid, isethionic acid, trifluoroacetic acid and the like.
- When the compound of the present disclosure is acidic, the suitable “pharmaceutically acceptable salt” refers to a salt prepared from pharmaceutically acceptable non-toxic bases, including inorganic bases and organic bases. Salts derived from such inorganic bases include aluminum, ammonium, calcium, copper, ferric, ferrous, lithium, magnesium, manganese, manganous, potassium, sodium, zinc salts and the like. Particularly preferred are ammonium, calcium, magnesium, potassium, and sodium salts. Salts derived from pharmaceutically acceptable organic non-toxic bases include salts of primary, secondary, and tertiary amines salts, and the substituted amines include naturally occurring substituted amines, cyclic amines, alkaline ion-exchange resins, such as arginine, betaine, caffeine, choline, N,N′-dibenzylethylenediamine, diethylamine, 2-diethylaminoethanol, 2-dimethylaminoethanol, aminoethanol, ethanolamine, ethylene diamine, N-ethylmorpholine, N-ethylpiperidine, dextrosamine, glucosamine, histidine, hydroxocobalamin, isopropylamine, lysine, methyl glucamine, morpholine, piperazine, piperidine, pyridine, polyamine resin, procaine, purine, theobromine, triethylamine, trimethylamine, tripropylamine, tromethamine and the like.
- The compound of this disclosure may be prepared by employing reactions as shown in the following synthetic schemes (scheme 1-6), in addition to other standard procedures that are known in the literature or exemplified in experimental procedures. The compounds and synthetic processes of the present disclosure will be better understood in connection with the following synthetic schemes which illustrate the method by which the compound of the disclosure may be prepared. Such description is intended to be illustrative rather than limiting the scope of the present disclosure.
- Step 1a: Preparation of 4-fluoro-2-methoxyaniline (Intermediate 102): 2-Methoxy-4-fluoro-1-nitrobenzene (Intermediate 101) (20 g, 0.12 mol, 1.0 eq), ammonium chloride (13 g, 0.24 mol, 2.0 eq) and water (50 mL) were dissolved in ethanol (200 mL). After heated to 55° C., iron powder (13 g, 0.24 mol, 2.0 eq) was added portionwise. The temperature was raised to 85° C. and after reaction for 2 hours, the temperature was lowered to room temperature, filtration was performed and the solvent was rotary evaporated. The residue was dissolved in ethyl acetate which was then washed with water, washed with saturated brine, dried over anhydrous sodium sulfate, filtered and rotary evaporated to obtain 4-fluoro-2-methoxyaniline as a light green product (15 g, yield: 91%). LCMS (ESI): m/z 142[M+H]+.
- Step 1b: Preparation of 4-fluoro-2-methoxy-5-nitroaniline (Intermediate 103): Under an ice bath condition, 4-fluoro-2-methoxyaniline (Intermediate 102) (15 g, 106.4 mmol, 1.0 eq) was added dropwise to a concentrated sulfuric acid (150 mL) while controlling the temperature around 0° C. during the course of addition. After the forming solid was dissolved completely, potassium nitrate (11 g, 106.4 mmol, 1.0 eq) was added portionwise and the reaction was continued for 1 hour under this condition. The reaction was poured into ice water and the pH was adjusted to basic by sodium hydroxide. A vast amount of solid was precipitated out which was filtered and washed with water, petroleum ether, dried in air to give 4-fluoro-2-methoxy-5-nitroaniline as a brown solid (18 g, yield: 77%). LCMS (ESI): m/z 187 [M+H]+.
- Step 1c: Preparation of 1-bromo-4-fluoro-2-methoxy-5-nitrobenzene (Intermediate 104): Under nitrogen atmosphere, cupric bromide (3.568 g, 16 mmol, 1.5 eq) and tert-Butyl nitrite (3.399 g, 33 mmol, 3 eq) were mixed in acetonitrile (250 mL) and heated to 50° C. A solution of 4-fluoro-2-methoxy-5-nitroaniline (103) (2 g, 11 mmol, 1 eq) in acetonitrile (20 mL) was added dropwise to the system and stirred for reaction for additional 2.5 hours. The reaction temperature was lowered to room temperature and extraction was performed with ethyl acetate and water. The organic phase was washed with water, washed with brine, dried over anhydrous sodium sulfate, and concentrated in vacuo to yield the crude product as a brown oil which was purified by silica gel column chromatography (petroleum ether/ethyl acetate=10/1) to give 1-bromo-4-fluoro-2-methoxy-5-nitrobenzene as a yellow solid (1.87 g, yield: 69.57%).
- Step 1d: Preparation of N1-(4-bromo-5-methoxy-2-nitrophenyl)-N1,N2,N2-trimethylethane-1,2-diamine (Intermediate 105-A-5): 1-Bromo-4-fluoro-2-methoxy-5-nitrobenzene (Intermediate 104) (1.87 g, 7.48 mmol, 1 eq), N, N-diisopropylethylamine (2.41 g, 17.8 mmol, 2.5 eq) and N1,N1,N2-trimethylethane-1,2-diamine (1.146 g, 11.22 mmol, 1.5 eq) were dissolved in ethanol (50 mL) and heated to reflux and react under stirring for 16 hours. After the reaction was completed, the temperature was lowered to room temperature and extraction was performed with dichloromethane. The organic phase was washed with water and brine, dried over anhydrous sodium sulfate, concentrated in vacuo to give N1-(4-bromo-5-methoxy-2-nitrophenyl)-N1,N2,N2-trimethylethane-1,2-diamine as a red oil (2.3 g, crude) which was used for next step directly.
- Step 1e: Preparation of N1-(2-(dimethylamino)ethyl)-5-methoxy-N1-methyl-2-nitrobenzene-1,4-diamine (Intermediate 106-A-11): 4-Fluoro-2-methoxy-5-nitroaniline (Intermediate 103) (2 g, 10.75 mmol, 1 eq), DIPEA (2.77 g, 21.5 mmol, 2 eq) and N1,N1,N2-trimethylethane-1,2-diamine (1.644 g, 16.125 mmol, 1.5 eq) were mixed in tetrahydrofuran (50 mL). The mixture was stirred under reflux to react for 3 days. After the reaction was completed, the reaction temperature was lowered to room temperature and extraction was performed with dichloromethane and water. The organic phase was washed with water and brine, dried over anhydrous sodium sulfate, concentrated in vacuo and purified by silica gel column chromatography (dichloromethane/methanol/ammonium hydroxide=100/1/0.01) to give N1-(2-(dimethylamino)ethyl)-5-methoxy-N1-methyl-2-nitrobenzene-1,4-diamine as a red oil (1.8 g, crude).
- Preparation of 1-(2-chloro-5-methoxypyrimidin-4-yl)-1H-indole (Intermediate 204-6): 1H-indole (201-6) (1 g, 8.55 mmol, 1.0 eq) was dissolved in tetrahydrofuran (30 mL) and potassium tert-butoxide (1.44 g, 12.82 mmol, 1.5 eq) was added portionwise at 0° C. under nitrogen protection and reacted at room temperature for one hour. The reaction was re-cooled to room temperature and 2,4-dichloro-5-methoxypyrimidine (202-6) (2.3 g, 12.82, 1.5 eq) in tetrahydrofuran (20 mL) was added dropwise. After addition, the reaction was warmed to room temperature and continued reacting overnight. The reaction was poured into water, extracted with ethyl acetate which was then washed with saturated brine, dried over anhydrous sodium sulfate and rotary evaporated to obtain a residue which was washed with petroleum ether to give 1-(2-chloro-5-methoxypyrimidin-4-yl)-1H-indole as a beige solid (2.2 g, yield: 100%). LCMS (ESI): m/z 260 [M+H]+.
- The following Intermediates (204-8, 204-10, and 204-11) were prepared according to the method described above for the preparation of Intermediate 204-6, except that the Intermediates 201-6 and 202-6 therein were replaced by the corresponding Intermediates 201 and 202.
- Preparation of Intermediate 204-8: 1-(2-chloro-5-methyl-pyrimidin-4-yl)-1H-indole (Intermediate 204-8) was prepared by reacting 1H-indole (201-6) with 2,4-dichloro-5-methylpyrimidine (202-8). LCMS (ESI): m/z 244[M+H]+.
- Preparation of Intermediate 204-10: 2-chloro-4-(1H-indol-1-yl)-N,N-dimethylpyrimidin-5-amine (Intermediate 204-10) was prepared by reacting 1H-indole (201-6) with 2,4-dichloro-N,N-dimethylpyrimidin-5-amine (202-10). LCMS (ESI): m/z 273[M+H]+.
- Preparation of Intermediate 204-11: 2-chloro-4-(1H-indol-1-yl)-N-methylpyrimidin-5-amine (Intermediate 204-11) was prepared by reacting 1H-indole (201-6) with 2,4-dichloro-N-methylpyrimidin-5-amine (202-11). LCMS (ESI): m/z 259[M+H]+.
- Intermediate 205 was prepared by one of the three methods, the methods 3-1, 3-2 and 3-3, as described below:
- Method 3-1 (Scheme 2):
- Preparation of 4-(1H-indol-1-yl)-5-methoxypyrimidin-2-amine (Intermediate 205-6): Compound 1-(2-chloro-5-methoxypyrimidin-4-yl)-1H-indole (Intermediate 204-6) (1 g, 3.9 mmol, 1.0 eq), ammonium hydroxide (2 mL) and N,N-diisopropylethylamine (1 mL) were dissolved in N-methylpyrrolidone (10 mL) in a sealed reactor and heated to 110° C. reacting overnight. The reaction was cooled to room temperature and poured into water, extracted with ethyl acetate which was then washed with saturated brine, dried over anhydrous sodium sulfate and rotary evaporated. The residue was purified by silica gel column chromatography (eluent: petroleum ether/ethyl acetate=20/1 to 1/1) to give 4-(1H-indol-1-yl)-5-methoxypyrimidin-2-amine as a white solid (240 mg, yield: 26%). LCMS (ESI): m/z 241[M+H]+.
- Method 3-2 (Scheme 2):
- Preparation of 4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-amine (Intermediate 205-5): Sodium hydride (210 mg, 7.0 mmol, 5.0 eq) was added to N-methylpyrrolidone (15 mL) at room temperature and then cooled in an ice bath and 1H-Indole (201-6) (410 mg, 3.5 mmol, 2.5 eq) was then added. After reaction at room temperature for 1 hour, the reaction was cooled in an ice bath and 4-chloro-5-(trifluoromethyl)pyrimidin-2-amine (203-5) (279 mg, 1.4 mmol, 1.0 eq) in N-methylpyrrolidone (1 mL) was added to the above mixture and stirred at room temperature for 1 hour. Water and ethyl acetate were added and the layers were separated. The organic phase was dried, concentrated in vacuo and purified by silica gel column chromatography (eluent: petroleum ether/ethyl acetate=4/1 to 1/1) to give 4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-amine as a yellow solid (220 mg, yield: 56%). LCMS (ESI): m/z 279[M+H]+.
- Preparation of 4-(5-methoxy-1H-pyrrolo[3,2-b]pyridin-1-yl)pyrimidin-2-amine (Intermediate 205-20): 5-Methoxy-1H-pyrrolo[3,2-b]pyridine (201-20) (200 mg, 1.35 mmol, 1 eq), cesium carbonate (877.5 mg, 2.7 mmol, 2 eq) and 4-chloropyrimidin-2-amine (203-20) (261 mg, 2.025 mmol, 1.5 eq) were mixed in N-methylpyrrolidone (5 mL). The mixture was heated to 150° C. and stirred to react for 2 hours. After the reaction was completed, the temperature was lowered to room temperature, and the reaction mixture was quenched with water, filtered and the residue was washed with water, dried in vacuum to give a gray solid (300 mg, yield: 92.13%). LCMS (ESI): m/z 242[M+H]+.
- Preparation of 4-(5-fluoro-1H-indol-1-yl)pyrimidin-2-amine (Intermediate 205-28): 5-Fluoro-1H-indole (201-28) (500 mg, 3.7 mmol, 1.0 eq), cesium carbonate (2.4 g, 7.4 mmol, 2.0 eq) and 4-chloropyrimidin-2-amine (203-28) (480 mg, 5.1 mmol, 1.0 eq) were dissolved in NMP (50 mL) and reacted at 150° C. for 1 hour. The reaction temperature was lowered to room temperature and the mixture was poured into water, filtered, and the residue was washed with water and dried to give 4-(5-fluoro-1H-indol-1-yl)pyrimidin-2-amine as a pink solid (500 mg, 59%). LCMS (ESI): m/z 229[M+H]+.
- Method 3-3 (Scheme 3):
- Preparation of 4-(5-nitro-indol-1-yl)-pyrimidin-2-ylamine (Intermediate 205-34): 5-Nitro-1H-indole (201-34) (3 g, 18.5 mmol) and 4-chloro-2-(methylthio)pyrimidine (301-34) (2.98 g, 18.5 mmol) were dissolved in N, N-dimethylformamide (100 mL) at room temperature and potassium carbonate (5.1 g, 37 mmol) was then added and the mixture was heated to 80° C. to react overnight. Water (500 mL) was then added and the mixture was filtered directly and dried in vacuum to give 1-(2-(methylthio)pyrimidin-4-yl)-5-nitro-1H-indole (302-34) as a gray solid (5.2 g, yield: 98%). LCMS (ESI): m/z 287[M+H]+. Compound 302-34 (0.5 g, 1.7 mmol) was dissolved in dichloromethane (15 mL) and 3-chloroperbenzoic acid (0.3, 1.7 mmol) was then added. After stirring at room temperature for 4 hours, a saturated aqueous sodium carbonate solution (20 mL) was added and the mixture was extracted with dichloromethane (20 mL) three times, which was dried and concentrated to give 1-(2-(methylsulfinyl)pyrimidin-4-yl)-5-nitro-1H-indole (303-34) as a yellow solid (0.51 g, yield: 98%). LCMS (ESI): m/z 303[M+H]+. Compound 303-34 (0.51 g, 1.69 mmol) was dissolved in tetrahydrofuran (10 mL) and 20% ammonium hydroxide (2 mL) was then added. The mixture was reacted at 80° C. overnight in a sealed tube and water (20 mL) was then added and extracted with dichloromethane (20 mL) three times, which was dried and concentrated to give 4-(5-nitro-1H-indol-1-yl)pyrimidin-2-amine (205-34) as a yellow solid (0.37 g, yield: 99.5%). LCMS (ESI): m/z 256 [M+H]+.
- Preparation of 4-(5-((tert-butyldiphenylsilyl)oxy)-1H-indol-1-yl)pyrimidin-2-amine (Intermediate 205-36): Under nitrogen atmosphere, 5-((tert-butyldiphenylsilyl)oxy)-1H-indole (201-36) (800 mg, 2.15 mmol, 1.2 eq), 4-chloro-2-(methylthio)pyrimidine (301-34) (286 mg, 1.79 mmol, 1 eq), cesium carbonate (1160 mg, 3.57 mmol, 2 eq), Pd2(dba)3 (77 mg, 0.086 mmol, 0.05 eq) and Xantphos (91 mg, 0.16 mmol, 0.09 eq) were mixed in toluene (20 mL) and stirred at 110° C. to react for 1 hour. After the reaction was completed, the reaction temperature was lowered to room temperature, and the mixture was concentrated in vacuo and purified by silica gel column chromatography (petroleum ether/ethyl acetate=20/1) to give 5-((tert-butyldiphenylsilyl)oxy)-1-(2-(methylthio)pyrimidin-4-yl)-1H-indole (compound 302-36) as a gray solid (980 mg, crude). LCMS (ESI): m/z 496 [M+H]+. Under nitrogen atmosphere and in an ice bath, compound 302-36 (240 mg, 0.485 mmol, 1 eq) was dissolved in dichloromethane (5 mL) and a solution of 3-chloroperbenzoic acid (118 mg, 0.528 mmol, 1.2 eq) in dichloromethane (2 mL) was then added to it dropwise. The mixture was reacted at room temperature for 30 minutes. After the reaction was completed, the mixture was quenched with a saturated sodium carbonate solution and extracted with dichloromethane and water. The organic phase was dried over anhydrous sodium sulfate and concentrated in vacuo to give 5-((tert-butyldiphenylsilyl)oxy)-1-(2-(methylsulfinyl)pyrimidin-4-yl)-1H-indole (303-36) as a gray solid (300 mg, crude). LCMS (ESI): m/z 512 [M+H]+. Compound 303-36 (300 mg, 0.587 mmol, 1 eq) and ammonium hydroxide (5 mL) were dissolved in tetrahydrofuran (10 mL) in a sealed reactor. The mixture was stirred at 80° C. for 2 hours. After the reaction was completed, the reaction temperature was lowered to room temperature, and the mixture was concentrated in vacuo and purified by silica gel column chromatography (petroleum ether/ethyl acetate=1/1) to give 4-(5-((tert-butyldiphenylsilyl)oxy)-1H-indol-1-yl)pyrimidin-2-amine (205-36) as a white solid (200 mg, yield: 73.53%). LCMS (ESI): m/z 464 [M+H]+.
- Preparation of 4-(5-methoxy-1H-indol-1-yl)pyrimidin-2-amine (Intermediate 205-27): Under an ice bath condition, 5-methoxy-1H-indole (210-27) (500 mg, 3.4 mmol, 1 eq) was dissolved in N-methylpyrrolidone (5 mL) and sodium hydride (272 mg, 6.8 mmol, 2 eq) was then added and the mixture was stirred at room temperature for 30 minutes. Compound 4-chloro-2-(methylthio)pyrimidine (301-15) (544 mg, 3.4 mmol, 1 eq) was added dropwise to the system and stirred for reaction for additional 1 hour. After the reaction was completed, water was added to quench the reaction and filtered. The residue was washed with water and dried to give methoxy-1-(2-(methylthio)pyrimidin-4-yl)-1H-indole (302-27) as a yellow solid (1.02 g, crude). LCMS (ESI): m/z 272 [M+H]+. Compound 5-methoxy-1-(2-(methylthio)pyrimidin-4-yl)-1H-indole (302-27) (500 mg, 1.845 mmol, 1 eq) was dissolved in dichloromethane (20 mL) and cooled to about 0° C. under nitrogen protection condition, and to which was added dropwise 3-chloroperbenzoic acid (374.4 mg, 1.845 mmol, 1.2 eq) in dichloromethane (2 mL). After addition, the mixture was reacted at room temperature for 1 hour. The reaction solution was washed with sodium carbonate aqueous solution and saturated brine, dried over anhydrous sodium sulfate and rotary evaporated to give a yellow solid 5-methoxy-1-(2-(methylsulfinyl)pyrimidin-4-yl)-1H-indole (303-27) as a yellow solid (580 mg, crude). LCMS (ESI): m/z 288 [M+H]+. Compound 5-methoxy-1-(2-(methylsulfinyl)pyrimidin-4-yl)-1H-indole (580 mg, 2.02 mmol, 1 eq) and ammonium hydroxide (5 mL) were dissolved in tetrahydrofuran (10 mL) and heated to 80° C. and continued reacting for 2 hours in a sealed reactor. The reaction solution temperature was lowered to room temperature and rotary evaporation was performed to leave a residue which was purified by silica gel column chromatography (dichloromethane/methanol=200/1) to give 4-(5-methoxy-1H-indol-1-yl)pyrimidin-2-amine (205-27) as a light yellow solid (407 mg, yield: 89.92%). LCMS (ESI): m/z 241 [M+H]+.
- The following Intermediates (205-8, 205-10) were prepared according to the method for Intermediate 205-6 in the synthetic method 3-1 described above, except that the Intermediate 204-6 therein was replaced by corresponding Intermediate 204.
- Preparation of Intermediate 205-8: The synthetic method was similar to method 3-1 of EXAMPLE 3 for the preparation of Intermediate 205-6, except that 1-(2-chloro-5-methoxypyrimidin-4-yl)-1H-indole (204-6) therein was replaced by 1-(2-chloro-5-methylpyrimidin-4-yl)-1H-indole (204-8). 4-(1H-indol-1-yl)-5-methylpyrimidin-2-amine (Intermediate 205-8) was prepared. LCMS (ESI): m/z 225 [M+H]+.
- Preparation of Intermediate 205-10: The synthetic method was similar to method 3-1 of EXAMPLE 3 for the preparation of Intermediate 205-6, except that in which 1-(2-chloro-5-methoxypyrimidin-4-yl)-1H-indole (204-10) therein was replaced by 2-chloro-4-(1H-indol-1-yl)-N,N-dimethylpyrimidin-5-amine (204-10). 4-(1H-indol-1-yl)-N5,N5-dimethylpyrimidine-2,5-diamine (Intermediate 205-10) was prepared. LCMS (ESI): m/z 254 [M+H]+.
- The following Intermediates (205-8, 205-10) were prepared according to the method of Intermediate 205-28 of the synthetic method 3-2 described above, except that the Intermediates 201-28 and 203-28 therein were replaced by Intermediates 201 and 203, respectively.
- Preparation of Intermediate 205-29: The synthetic method was similar to method 3-2 of EXAMPLE 3 for the preparation of Intermediate 205-28, except that 5-fluoro-1H-indole (201-28) therein was replaced by 6-fluoro-1H-indole (201-29) and 4-chloro-5-(trifluoromethyl)pyrimidin-2-amine (203-5) therein was replaced by 4-chloropyrimidin-2-amine (203-28). 4-(6-Fluoro-1H-indol-1-yl)pyrimidin-2-amine (Intermediate 205-29) was prepared. LCMS (ESI): m/z 229 [M+H]+.
- Preparation of Intermediate 205-30: The synthetic method was similar to method 3-2 of EXAMPLE 3 for the preparation of Intermediate 205-28, except that 5-fluoro-1H-indole (201-28) therein was replaced by 4-fluoro-1H-indole (201-30) and 4-chloro-5-(trifluoromethyl)pyrimidin-2-amine (203-5) therein was replaced by 4-chloropyrimidin-2-amine (203-28). 4-(4-Fluoro-1H-indol-1-yl)pyrimidin-2-amine (Intermediate 205-30) was prepared. LCMS (ESI): m/z 229 [M+H]+.
- Preparation of Intermediate 205-31: The synthetic method was similar to method 3-2 of EXAMPLE 3 for the preparation of Intermediate 205-28, except that 5-fluoro-1H-indole (201-28) therein was replaced by 5-chloro-1H-indole (201-31) and 4-chloro-5-(trifluoromethyl)pyrimidin-2-amine (203-5) therein was replaced by 4-chloropyrimidin-2-amine (203-28). 4-(5-Chloro-1H-indol-1-yl)pyrimidin-2-amine (Intermediate 205-31) was prepared. LCMS (ESI): m/z 245 [M+H]+.
- Preparation of Intermediate 205-124: The synthetic method was similar to method 3-2 of EXAMPLE 3 for the preparation of Intermediate 205-20, except that 5-methoxy-1H-pyrrolo[3,2-b]pyridine (201-20) therein was replaced by 5-chloro-1H-pyrrolo[3,2-b]pyridine (201-124). 4-(5-Chloro-1H-pyrrolo[3,2-b]pyridin-1-yl)pyrimidin-2-amine (Intermediate 205-124) was prepared. LCMS (ESI): m/z 246 [M+H]+.
- The following Intermediate (205-39) was prepared according to the method of Intermediate 205-34 of the synthetic method 3-3 described above, except that the Intermediate 201-34 therein was replaced by corresponding Intermediate 201.
- Preparation of Intermediate 205-39: The synthetic method was similar to method 3-3 of EXAMPLE 3 for the preparation of Intermediate 205-34, except that 5-nitro-1H-indole (201-34) therein was replaced by (1H-indol-5-yl)methanol (201-39). 1-(2-Aminopyrimidin-4-yl)-1H-indol-5-yl) methanol (Intermediate 205-39) was prepared. LCMS (ESI): m/z 241 [M+H]+.
- The following Intermediates (205-37, 205-38) were prepared according to the method of Intermediate 205-36 of the synthetic method 3-3, except that the Intermediate 201-36 therein was replaced by corresponding Intermediate 201.
- Preparation of Intermediate 205-37: The synthetic method was similar to method 3-3 of EXAMPLE 3 for the preparation of Intermediate 205-36, except that 5-((tert-butyldiphenylsilyl)oxy)-1H-indole (201-36) therein was replaced by 5-(2-((tert-butyldiphenylsilyl)oxy)ethoxy)-1H-indole (201-37). 4-(5-(2-((tert-Butyldiphenylsilyl)oxy)ethoxy)-1H-indol-1-yl)pyrimidin-2-amine (Intermediate 205-37) was prepared. LCMS (ESI): m/z 509 [M+H]+.
- Preparation of Intermediate 205-38: The synthetic method was similar to method 3-3 of EXAMPLE 3 for the preparation of Intermediate 205-36, except that 5-((tert-butyldiphenylsilyl)oxy)-1H-indole (201-36) therein was replaced by 5-(2-methoxyethoxy)-1H-indole (201-38). 4-(5-(2-Methoxyethoxy)-1H-indol-1-yl)pyrimidin-2-amine (Intermediate 205-38) was prepared. LCMS (ESI): m/z 285 [M+H]+.
- The following Intermediates (205-33-205-46) were prepared according to the method of Intermediate 205-27 of the synthetic method 3-3, except that the Intermediate 201-27 therein was replaced by corresponding Intermediate 201.
- Preparation of Intermediate 205-33: The synthetic method was similar to method 3-3 of EXAMPLE 3 for the preparation of Intermediate 205-27, except that 5-methoxy-1H-indole (201-27) therein was replaced by 1H-indole-5-carbonitrile (201-33). 1-(2-Aminopyrimidin-4-yl)-1H-indole-5-carbonitrile (Intermediate 205-33) was prepared. LCMS (ESI): m/z 236 [M+H]+.
- Preparation of Intermediate 205-46: The synthetic method was similar to method 3-3 of EXAMPLE 3 for the preparation of Intermediate 205-27, except that 5-methoxy-1H-indole (201-27) therein was replaced by 3-chloro-1H-indole (201-46). 4-(3-Chloro-1H-indol-1-yl)pyrimidin-2-amine (Intermediate 205-46) was prepared. LCMS (ESI): m/z 245 [M+H]+.
- Intermediate 403 was prepared by one of the three methods, methods 4-1, 4-2 and 4-3, as described below:
- Method 4-1 (Prepared Through Intermediates 103 and 204):
- Step 4-1a: Preparation of N-(4-fluoro-2-methoxy-5-nitrophenyl)-4-(1H-indol-1-yl)pyrimidin-2-amine (Intermediate 401-77): A mixed solution of compound 1-(2-chloropyrimidin-4-yl)-1H-indole (204-6) (500 mg, 2.18 mmol, 1 eq), 4-methylbenzenesulfonic acid (450.47 mg, 2.616 mmol, 1.2 eq) and compound 4-fluoro-2-methoxy-5-nitroaniline (103) (405.5 mg, 2.18 mmol, 1 eq) in tert-butanol (15 mL) was stirred to react at 110° C. for 16 hours in a sealed reactor. The reaction temperature was lowered to room temperature and concentration was performed in vacuo to give a yellow solid. The yellow solid was washed with a 2N aqueous sodium hydroxide solution and petroleum ether/
ethyl acetate 10/1, concentrated in vacuo to give N-(4-fluoro-2-methoxy-5-nitrophenyl)-4-(1H-indol-1-yl)pyrimidin-2-amine as a yellow solid (570 mg, yield: 68.88%). LCMS (ESI): m/z 380 [M+H]+. - Step 4-1b: Preparation of N-(4-(3-(dimethylamino)azetidin-1-yl)-2-methoxy-5-nitrophenyl)-4-(1H-indol-1-yl)pyrimidin-2-amine (Intermediate 401-C-77): N-(4-fluoro-2-methoxy-5-nitrophenyl)-4-(1H-indol-1-yl)pyrimidin-2-amine (401-77) (150 mg, 0.4 mmol, 1.0 eq) was dissolved in 30 mL tetrahydrofuran, and then N, N-diisopropylethylamine (153 mg, 1.2 mmol, 3.0 eq) and N,N-dimethylazetidin-3-amine hydrochloride (81 mg, 0.6 mmol, 1.5 eq) were added in sequence. The mixture was heated to 80° C. and stirred for 5 hours. After the reaction was completed, the temperature was lowered to room temperature and extraction was performed with ethyl acetate and water. The organic phase was washed with water and brine, dried over anhydrous sodium sulfate, concentrated in vacuo and purified by silica gel column chromatography (dichloromethane/methanol=150/1100/1) to give N-(4-(3-(dimethylamino)azetidin-1-yl)-2-methoxy-5-nitrophenyl)-4-(1H-indol-1-yl)pyrimidin-2-amine (402-C-77) as a red solid (170 mg, yield: 93%). LCMS (ESI): m/z 460[M+H]+.
- Step 4-1c: Preparation of N1-(4-(1H-indol-1-yl)pyrimidin-2-yl)-4-(3-(dimethylamino) azetidin-1-yl)-6-methoxybenzene-1,3-diamine (Intermediate 403-C-77): N-(4-(3-(dimethylamino)azetidin-1-yl)-2-methoxy-5-nitrophenyl)-4-(1H-indol-1-yl)pyrimidin-2-amine (402-C-77) (170 mg, 0.37 mmol, 1.0 eq) and ammonia chloride (65 mg, 1.2 mmol, 8.0 eq) were mixed in ethanol (30 mL) and water (7 mL) and heated to 50° C. Reduced iron powder (165 mg, 2.96 mmol, 8.0 eq) was then added to it and heated to 80° C. to react for 2 hours. After the reaction was completed, the mixture was filtered and the filtrate was concentrated and extracted with dichloromethane. The organic phase was dried over anhydrous sodium sulfate and rotary evaporated in vacuo to give product N1-(4-(1H-indol-1-yl)pyrimidin-2-yl)-4-(3-(dimethylamino)azetidin-1-yl)-6-methoxybenzene-1,3-diamine (179 mg, crude). LCMS (ESI): m/z 430[M+H]+.
- Method 4-2 (Prepared Through Intermediates 105 and 205):
- Step 4-2a: Preparation of N1-(4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-yl)-N4-(2-(dimethylamino)ethyl)-2-methoxy-N4-methyl-5-nitrobenzene-1,4-diamine (Intermediate 402-A-5): Under nitrogen protection, 4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-amine (205-5) (265 mg, 0.95 mmol, 1.2 eq), N1-(4-bromo-5-methoxy-2-nitrophenyl)-N1,N2,N2-trimethylethane-1,2-diamine (105-A-1) (266 mg, 0.80 mmol, 1.0 eq), cesium carbonate (782 mg, 2.4 mmol, 3.0 eq), 4,5-bisdiphenylphosphine-9,9-dimethylxanthene (46 mg, 0.08 mmol, 0.1 eq) and Pd2(dba)3 (46 mg, 0.04 mmol, 0.05 eq) were added to toluene (35 mL) and refluxed to react for 6 hours. After cooling to room temperature, the reaction was filtered and the filtrate was concentrated in vacuo and purified by silica gel column chromatography (eluent: dichloromethane/methanol=50/1 to 10/1) to give N1-(4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-yl)-N4-(2-(dimethylamino)ethyl)-2-methoxy-N4-methyl-5-nitrobenzene-1,4-diamine as a red solid (152 mg, yield: 36%). LCMS (ESI): m/z 530[M+H]+.
- Step 4-2b: Preparation of N4-(4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-yl)-N1-(2-(dimethylamino)ethyl)-5-methoxy-N1-methylbenzene-1,2,4-triamine (Intermediate 403-A-5): N1-(4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-yl)-N4-(2-(dimethylamino)ethyl)-2-methoxy-N4-methyl-5-nitrobenzene-1,4-diamine (402-5) (140 mg, 0.26 mmol, 1.0 eq) and ammonia chloride (114 mg, 2.12 mmol, 8.0 eq) were added to ethanol (30 mL) and water (8 mL), and heated to 50° C. Reduced iron powder (127 mg, 2.26 mmol, 8.5 eq) was added portionwise and heated to reflux to react for 1 hour. The reaction temperature was lowered to room temperature and concentration was performed in vacuo and extraction was performed with dichloromethane. The organic phase was dried over anhydrous sodium sulfate and concentrated in vacuo to give N4-(4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-yl)-N1-(2-(dimethylamino)ethyl)-5-methoxy-N1-methylbenzene-1,2,4-triamine as a brown oil (130 mg, yield: 98%). LCMS (ESI): m/z 500[M+H]+.
- Method 4-3 (Prepared Through Intermediates 204 and 106)
- Step 4-3a: Preparation of N2-(4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxy-5-nitrophenyl)-4-(1H-indol-1-yl)-N5-methylpyrimidine-2,5-diamine (Intermediate 402-A-11): 2-chloro-4-(1H-indol-1-yl)-N-methylpyrimidin-5-amine (204-11) (268 mg, 1.036 mmol) was dissolved in toluene (40 mL) and then N1-(2-(dimethylamino)ethyl)-5-methoxy-N1-methyl-2-nitrobenzene-1,4-diamine (106-A-11) (278 mg, 1.036 mmol, 1.0 eq), Pd2(dba)3 (94.8 mg, 0.1036 mmol, 0.1 eq), cesium carbonate (675 mg, 2.072 mmol, 2.0 eq) and 4,5-bisdiphenylphosphine-9,9-dimethylxanthene (60 mg, 0.1036 mmol, 0.1 eq) were added to it in sequence. The mixture was protected under nitrogen and stirred at 100° C. for 4 hours. The mixture was cooled to room temperature, concentrated and purified by silica gel column chromatography (dichloromethane/methanol=40/1) to give N2-(4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxy-5-nitrophenyl)-4-(1H-indol-1-yl)-N5-methylpyrimidine-2,5-diamine as a yellow solid (263 mg, yield: 51.8%). LCMS (ESI): m/z 491[M+H]+.
- Step 4-3b: Preparation of N4-(4-(1H-indol-1-yl)-5-(methylamino)pyrimidin-2-yl)-N1-(2-(dimethylamino)ethyl)-5-methoxy-N1-methylbenzene-1,2,4-triamine (Intermediate 403-A-11): N2-(4-((2-(Dimethylamino)ethyl)(methyl)amino)-2-methoxy-5-nitrophenyl)-4-(1H-indol-1-yl)-N5-methylpyrimidine-2,5-diamine (402-A-11) (260 mg, 0.537 mmol, 1.0 eq) was dissolved in methanol (40 mL) and then zinc powder (279 mg, 4.297 mmol, 8.0 eq) and ammonia chloride (230 mg, 4.297 mmol, 8.0 eq) were added. The mixture was stirred at 60° C. for 4 hours and then cooled to room temperature. Dichloromethane was added to it and filtered. The filtrate was washed with water and saturated brine. The organic phase was dried over anhydrous sodium sulfate, concentrated to give N4-(4-(1H-indol-1-yl)-5-(methylamino)pyrimidin-2-yl)-N1-(2-(dimethylamino)ethyl)-5-methoxy-N1-methylbenzene-1,2,4-triamine as a yellow solid (226 mg, crude). LCMS (ESI): m/z 461[M+H]+.
- The following Intermediates (403-C-78, 403-C-79, 403-B-80, 403-B-81, 403-B-82, 403-C-84) were prepared according to the synthetic method 4-1.
- Preparation of Intermediate 403-C-78: The synthetic method was similar to that described for the synthesis of 403-C-77 in method 4-1 of EXAMPLE 4, except that compound N,N-dimethylazetidin-3-amine hydrochloride therein was replaced by (S)—N,N-dimethylpyrrolidin-3-amine. (S)—N1-(4-(1H-Indol-1-yl)pyrimidin-2-yl)-4-(3-(dimethylamino)pyrrolidin-1-yl)-6-methoxybenzene-1,3-diamine (403-C-78) was prepared. LCMS (ESI): m/z 444 [M+H]+.
- Preparation of Intermediate 403-C-79: The synthetic method was similar to that described for the synthesis of Intermediate 403-C-77 in method 4-1 of EXAMPLE 4, except that N,N-dimethylazetidin-3-amine hydrochloride therein was replaced by (R)—N,N-dimethylpyrrolidin-3-amine. (R)—N1-(4-(1H-Indol-1-yl)pyrimidin-2-yl)-4-(3-(dimethylamino)pyrrolidin-1-yl)-6-methoxybenzene-1,3-diamine (403-C-79) was repaired. LCMS (ESI): m/z 444 [M+H]+.
- Preparation of Intermediate 403-B-80: The synthetic method was similar to method 4-1 of EXAMPLE 4. N-(4-fluoro-2-methoxy-5-nitrophenyl)-4-(1H-indol-1-yl)pyrimidin-2-amine (401-6) (250 mg, 0.659 mmol, 1.0 eq) was dissolved in ethanol (30 mL) and N, N-diisopropylethylamine (255 mg, 1.978 mmol, 1.0 eq) and N-methyl-2-(pyrrolidin-1-yl)ethan-1-amine (380 mg, crude) were added to it. The mixture was heated to 100° C. and continued to react overnight in a sealed tube. After the reaction was completed, the reaction temperature was lowered to room temperature and dilution was performed with ethyl acetate. The organic phase was washed with water and saturated brine, dried over anhydrous sodium sulfate, concentrated and purified by silica gel column chromatography (eluent: dichloromethane/methanol=60/1 to 50/1) to give N1-(4-(1H-indol-1-yl)pyrimidin-2-yl)-2-methoxy-N4-methyl-5-nitro-N4-(2-(pyrrolidin-1-yl)ethyl)benzene-1,4-diamine (402-B-80) as a yellow solid (257 mg, yield: 80.0%). LCMS (ESI): m/z 488[M+H]+. N1-(4-(1H-indol-1-yl)pyrimidin-2-yl)-2-methoxy-N4-methyl-5-nitro-N4-(2-(pyrrolidin-1-yl)ethyl)benzene-1,4-diamine (402-B-80) (257 mg, 0.527 mmol, 1.0 eq) was dissolved in methanol (40 mL) and then zinc powder (274 mg, 4.216 mmol, 8.0 eq) and ammonia chloride (225 mg, 4.216 mmol, 8.0 eq) were added. The mixture was stirred at 60° C. for 4 hours, cooled to room temperature, diluted with dichloromethane and filtered. The filtrate was washed with water and saturated brine. The organic phase was dried over anhydrous sodium sulfate, concentrated to give N4-(4-(1H-indol-1-yl)pyrimidin-2-yl)-5-methoxy-N1-methyl-N1-(2-(pyrrolidin-1-yl)ethyl)benzene-1,2,4-triamine (403-B-80) as a yellow solid (169 mg, crude). LCMS (ESI): m/z 458 [M+H]+.
- Preparation of Intermediate 403-B-81: The synthetic method was similar to that described for the synthesis of Intermediate 403-B-80 in method 4-1 of EXAMPLE 4, except that N-methyl-2-(pyrrolidin-1-yl)ethan-1-amine therein was replaced by N-methyl-2-(piperidin-1-yl)ethan-1-amine. N4-(4-(1H-Indol-1-yl)pyrimidin-2-yl)-5-methoxy-N1-methyl-N1-(2-(piperidin-1-yl)ethyl)benzene-1,2,4-triamine (Intermediate 403-B-81) was prepared. LCMS (ESI): m/z 472 [M+H]+.
- Preparation of Intermediate 403-B-82: The synthetic method was similar to that described for the synthesis of Intermediate 403-B-80 in method 4-1 of EXAMPLE 4, except that N-methyl-2-(pyrrolidin-1-yl)ethan-1-amine therein was replaced by N-methyl-2-morpholinoethan-1-amine. N4-(4-Indol-1-yl-pyrimidin-2-yl)-5-methoxy-N1-methyl-N1-(2-morpholin-4-yl-ethyl)-benzene-1,2,4-triamine (Intermediate 403-B-82) was prepared. LCMS (ESI): m/z 474 [M+H]+.
- Preparation of Intermediate 403-C-84: The synthetic method was similar to that described for the synthesis of Intermediate 403-C-77 in method 4-1 of EXAMPLE 4, except that N,N-dimethylazetidin-3-amine hydrochloride therein was replaced by N-methylpiperazine. N1-(4-(1H-Indol-1-yl)pyrimidin-2-yl)-6-methoxy-4-(4-methylpiperazin-1-yl)benzene-1,3-diamine (Intermediate 403-C-79) was obtained. LCMS (ESI): m/z 444 [M+H]+.
- The following Intermediates (403-A-6, 403-A-8, 403-A-10, 402-A-20, 403-A-27, 403-A-28, 403-A-29, 403-A-30, 403-A-31, 403-A-33, 403-A-34, 403-A-36, 403-A-37, 403-A-38, 403-A-39, 403-A-41, 403-A-46, 403-A-124) were prepared according to the synthetic method 4-2, except that the Intermediate 205-5 therein was replaced by corresponding Intermediate 205.
- Preparation of Intermediate 403-A-6: The synthetic method was similar to method 4-2 of EXAMPLE 4, except that 4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-amine (205-5) therein was replaced by 4-(1H-indol-1-yl)-5-methoxypyrimidin-2-amine (205-6). N4-(4-(1H-Indol-1-yl)-5-methoxypyrimidin-2-yl)-N1-(2-(dimethylamino)ethyl)-5-methoxy-N1-methylbenzene-1,2,4-triamine (Intermediate 403-A-6) was prepared. LCMS (ESI): m/z 462 [M+H]+.
- Preparation of Intermediate 403-A-8: The synthetic method was similar to method 4-2 of EXAMPLE 4, except that 4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-amine (205-5) was replaced by 4-(1H-indol-1-yl)-5-methylpyrimidin-2-amine (205-8). N4-(4-(1H-Indol-1-yl)-5-methylpyrimidin-2-yl)-N1-(2-(dimethylamino)ethyl)-5-methoxy-N1-methylbenzene-1,2,4-triamine (Intermediate 403-A-8) was prepared. LCMS (ESI): m/z 446 [M+H]+.
- Preparation of Intermediate 403-A-10: The synthetic method was similar to method 4-2 of EXAMPLE 4, except that 4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-amine (205-5) therein 4-(1H-indol-1-yl)-N5,N5-dimethylpyrimidine-2,5-diamine (205-10). N4-(5-(Dimethylamino)-4-(1H-indol-1-yl)pyrimidin-2-yl)-N1-(2-(dimethylamino)ethyl)-5-methoxy-N1-methylbenzene-1,2,4-triamine (Intermediate 403-A-10) was prepared. LCMS (ESI): m/z 475 [M+H]+.
- Preparation of Intermediate 403-A-20: The synthetic method was similar to method 4-2 of EXAMPLE 4, except that 4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-amine (205-5) therein was replaced by 4-(5-methoxy-1H-pyrrolo[3,2-b]pyridin-1-yl)pyrimidin-2-amine (205-20). N1-(2-(Dimethylamino)ethyl)-5-methoxy-N4-(4-(5-methoxy-1H-pyrrolo[3,2-b]pyridin-1-yl)pyrimidin-2-yl)-N1-methyl-2-nitrobenzene-1,4-diamine (Intermediate 403-A-20) was prepared. LCMS (ESI): m/z 493 [M+H]+.
- Preparation of Intermediate 403-A-27: The synthetic method was similar to method 4-2 of EXAMPLE 4, except that 4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-amine (205-5) therein was replaced by 4-(5-methoxy-1H-indol-1-yl)pyrimidin-2-amine (205-27). N1-(2-(Dimethylamino)ethyl)-5-methoxy-N4-(4-(5-methoxy-1H-indol-1-yl)pyrimidin-2-yl)-N1-methylbenzene-1,2,4-triamine (Intermediate 403-A-27) was prepared. LCMS (ESI): m/z 462 [M+H]+.
- Preparation of Intermediate 403-A-28: The synthetic method was similar to that described in method 4-2 of EXAMPLE 4, except that 4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-amine (205-5) therein was replaced by 4-(5-fluoro-1H-indol-1-yl)pyrimidin-2-amine (205-28). N1-(2-(Dimethylamino)ethyl)-N4-(4-(5-fluoro-1H-indol-1-yl)pyrimidin-2-yl)-5-methoxy-N1-methylbenzene-1,2,4-triamine (Intermediate 403-A-28) was prepared. LCMS (ESI): m/z 450 [M+H]+.
- Preparation of Intermediate 403-A-29: The synthetic method was similar to method 4-2 of EXAMPLE 4, except that 4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-amine (205-5) therein was replaced by 4-(6-fluoro-1H-indol-1-yl)pyrimidin-2-amine (205-29). N1-(2-(Dimethylamino)ethyl)-N4-(4-(6-fluoro-1H-indol-1-yl)pyrimidin-2-yl)-5-methoxy-N1-methylbenzene-1,2,4-triamine (Intermediate 403-A-29) was prepared. LCMS (ESI): m/z 450 [M+H]+.
- Preparation of Intermediate 403-A-30: The synthetic method was similar to method 4-2 of EXAMPLE 4, except that 4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-amine (205-5) therein was replaced by 4-(4-fluoro-1H-indol-1-yl)pyrimidin-2-amine (205-30). N1-(2-(Dimethylamino)ethyl)-N4-(4-(4-fluoro-1H-indol-1-yl)pyrimidin-2-yl)-5-methoxy-N1-methylbenzene-1,2,4-triamine (Intermediate 403-A-30) was obtained. LCMS (ESI): m/z 450 [M+H]+.
- Preparation of Intermediate 403-A-31: The synthetic method was similar to method 4-2 of EXAMPLE 4, except that 4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-amine (205-5) therein was replaced by 4-(5-chloro-1H-indol-1-yl)pyrimidin-2-amine (205-31). N1-(2-(Dimethylamino)ethyl)-N4-(4-(5-chloro-1H-indol-1-yl)pyrimidin-2-yl)-5-methoxy-N1-methylbenzene-1,2,4-triamine (Intermediate 403-A-31) was prepared. LCMS (ESI): m/z 466 [M+H]+.
- Preparation of Intermediate 403-A-33: The synthetic method was similar to method 4-2 of EXAMPLE 4, except that 4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-amine (205-5) therein was replaced by 1-(2-aminopyrimidin-4-yl)-1H-indole-5-carbonitrile (205-33). 1-(2-((5-Amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino) pyrimidin-4-yl)-1H-indole-5-carbonitrile (Intermediate 403-A-33) was prepared. LCMS (ESI): m/z 457 [M+H]+.
- Preparation of Intermediate 403-A-34: The synthetic method was similar to method 4-2 of EXAMPLE 4, except that 4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-amine (205-5) therein was replaced by 4-(5-nitro-1H-indol-1-yl)pyrimidin-2-amine (205-34). N1-(2-Dimethylamino-ethyl)-5-methoxy-N1-methyl-N4-[4-(5-nitro-indol-1-yl)-pyrimidin-2-yl]-benzene-1,2,4-triamine (Intermediate 403-A-34) was prepared. LCMS (ESI): m/z 477 [M+H]+.
- Preparation of Intermediate 403-A-36: The synthetic method was similar to method 4-2 of EXAMPLE 4, except that 4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-amine (205-5) therein was replaced by 4-(5-((tert-butyldiphenylsilyl)oxy)-1H-indol-1-yl)pyrimidin-2-amine (205-36). 1-(2-((5-Amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-1H-indol-5-ol (Intermediate 403-A-36) was prepared. LCMS (ESI): m/z 448 [M+H]+.
- Preparation of Intermediate 403-A-37: The synthetic method was similar to method 4-2 of EXAMPLE 4, except that 4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-amine (205-5) therein was replaced by 4-(5-(2-((tert-butyldiphenylsilyl)oxy)ethoxy)-1H-indol-1-yl)pyrimidin-2-amine (205-37). N4-(4-(5-(2-((tert-Butyldiphenylsilyl)oxy)ethoxy)-1H-indol-1-yl)pyrimidin-2-yl)-N1-(2-(dimethylamino)ethyl)-5-methoxy-N1-methylbenzene-1,2,4-triamine (Intermediate 403-A-37) was prepared. LCMS (ESI): m/z 730 [M+H]+.
- Preparation of Intermediate 403-A-38: The synthetic method was similar to method 4-2 of EXAMPLE 4, except that 4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-amine (205-5) therein was replaced by 4-(5-(2-methoxyethoxy)-1H-indol-1-yl)pyrimidin-2-amine (205-38). N1-(2-(Dimethylamino)ethyl)-5-methoxy-N4-(4-(5-(2-methoxyethoxy)-1H-indol-1-yl)pyrimidin-2-yl)-N1-methylbenzene-1,2,4-triamine (Intermediate 403-A-38) was obtained. LCMS (ESI): m/z 730 [M+H]+.
- Preparation of Intermediate 403-A-39: The synthetic method was similar to method 4-2 of EXAMPLE 4, except that 4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-amine (205-5) therein was replaced by (1-(2-aminopyrimidin-4-yl)-1H-indol-5-yl)methanol (205-39). (1-(2-((5-Amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-1H-indol-5-yl)methanol (Intermediate 403-A-39) was prepared. LCMS (ESI): m/z 462 [M+H]+.
- Preparation of 403-A-41: Compound 1-(2-aminopyrimidin-4-yl)-1H-indole-5-carbonitrile (205-33) (120 mg, 0.51 mmol, 1.2 eq), compound N1-(4-bromo-5-methoxy-2-nitrophenyl)-N1,N2,N2-trimethylethane-1,2-diamine (105-A-1) (139.4 mg, 0.42 mmol, 1 eq), cesium carbonate (273 mg, 0.84 mmol, 2 eq), tris (dibenzylideneacetone) dipalladium (19 mg, 0.021 mmol, 0.05 eq) and 4,5-bisdiphenylphosphine-9,9-dimethylxanthene (21.85 mg, 0.038 mmol, 0.09 eq) were dissolved in toluene (20 mL), and heated to 110° C. and reacted for 6 hours under nitrogen protection. The reaction temperature was lowered to room temperature and the solvent was rotary evaporated. The residue was purified by silica gel column chromatography (dichloromethane/methanol=100/1) to give 1-(2-((4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxy-5-nitrophenyl)amino)pyrimidin-4-yl)-1H-indole-5-carbonitrile (402-A-33) as a red solid (200 mg, yield: 98.03%). LCMS (ESI): m/z 487[M+H]+. The compound obtained above (500 mg, 1.03 mmol, 1 eq) was dissolved in a mixed solvent of ethanol (10 mL) and dimethyl sulfoxide (1 mL), and then sodium hydroxide (1 ml, 1M aqueous solution) was added and stirred in an ice bath to mix well. Hydrogen peroxide (1 ml, 30% aqueous solution) was added dropwise slowly and stir continued for 5 minutes in an ice bath. The reaction was quenched with a saturated aqueous sodium sulfite solution, extracted with ethyl acetate and purified by silica gel column chromatography to give 1-(2-((4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxy-5-nitrophenyl)amino)pyrimidin-4-yl)-1H-indole-5-carboxamide (402-A-41) (417 mg, yield: 80.3%). LCMS (ESI): m/z 505[M+H]+. The compound obtained above (417 mg, 0.827 mmol, 1 eq) was dissolved in a mixed solvent of ethanol (30 mL) and aqueous ammonium chloride solution (3 mL) and heated to 60° C. Reduced iron powder (185 mg, 3.0 mmol, 4 eq) was added and the stir continued for 2 hours and then filtered. The filtrate was extracted with dichloromethane which was rotary evaporated to give the crude product which was purified by silica gel column chromatography to give 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-1H-indole-5-carboxamide (403-A-41) (377 mg, 0.794 mmol, yield: 96.0%). LCMS (ESI): 475 m/z [M+H]+.
- Preparation of Intermediate 403-A-38: The synthetic method was similar to method 4-2 of EXAMPLE 4, except that 4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-amine (205-5) therein was replaced by 4-(3-chloro-1H-indol-1-yl)pyrimidin-2-amine (205-46). N4-(4-(3-Chloro-1H-indol-1-yl)pyrimidin-2-yl)-N1-(2-(dimethylamino)ethyl)-5-methoxy-N1-methylbenzene-1,2,4-triamine was prepared (Intermediate 403-A-46). LCMS (ESI): m/z 466 [M+H]+.
- Preparation of Intermediate 403-A-124: The synthetic method was similar to method 4-2 of EXAMPLE 4, except that 4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-amine (205-5) therein was replaced by 4-(5-chloro-1H-pyrrolo[3,2-b]pyridin-1-yl)pyrimidin-2-amine (205-124). N4-(4-(5-Chloro-1H-pyrrolo[3,2-b]pyridin-1-yl)pyrimidin-2-yl)-N1-(2-(dimethylamino)ethyl)-5-methoxy-N1-methylbenzene-1,2,4-triamine was prepared (Intermediate 403-A-124). LCMS (ESI): m/z 467 [M+H]+.
- Intermediate 506 was prepared by one of the three methods, methods 5-1, 5-2 and 5-3, as described below:
- Method 5-1: Prepared Through Intermediates 503 and 504.
- Method 5-2 (Prepared Through Intermediates 503 and 106):
- Step 5-2a: Preparation of 6-chloro-1-methyl-1H-benzo[d]imidazol-2(3H)-one (Intermediate 502-51): 5-Chloro-N1-methylbenzene-1,2-diamine (501-51) (3.3 g, 21 mmol, 1.0 eq) was dissolved in dichloromethane (150 mL) and triethylamine (4.4 mL, 31.5 mmol, 1.5 eq) was added. The mixture temperature was lowered to 0° C. and triphosgene (2.6 g, 8.4 mmol, 0.4 eq) in dichloromethane (30 mL) was added dropwise slowly under nitrogen protection. The mixture was reacted for half an hour and then the pH of the reaction was adjusted to 7-8 by aqueous sodium carbonate. The solid was precipitated out which was filtered and dried to give the product 6-chloro-1-methyl-1H-benzo[d]imidazol-2(3H)-one (2.65 g, yield: 69%). LCMS (ESI): m/z 183[M+H]+.
- Step 5-2b: Preparation of 5-chloro-1-(2-chloropyrimidin-4-yl)-3-methyl-1H-benzo[d]imidazol-2(3H)-one (Intermediate 503-51): 6-Chloro-1-methyl-1H-benzo[d]imidazol-2(3H)-one (502-51) (500 mg, 2.7 mmol, 1.0 eq) and caesium carbonate (670 mg, 4.05 mmol, 1.5 eq) were mixed in N, N-dimethylformamide (70 mL), and then 2,4-dichloropyrimidine (410 mg, 2.7 mmol, 1.0 eq) was added under nitrogen protection and stifled at room temperature for 2 h. After the reaction was completed, a large amount of water was added and the solid was precipitated out which was filtered and dried to give the product 5-chloro-1-(2-chloropyrimidin-4-yl)-3-methyl-1H-benzo[d]imidazol-2(3H)-one (410 mg, yield: 50%). LCMS (ESI): m/z 295[M+H]+.
- Step 5-2c: Preparation of 5-chloro-1-(2-(4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxy-5-nitrophenylamino)pyrimidin-4-yl)-3-methyl-1H-benzo[d]imidazol-2(3H)-one (Intermediate 505-A-51): 5-Chloro-1-(2-chloropyrimidin-4-yl)-3-methyl-1H-benzo[d]imidazol-2(3H)-one (503-51) (240 mg, 0.81 mmol, 1.0 eq), N1-(2-(dimethylamino)ethyl)-5-methoxy-N1-methyl-2-nitrobenzene-1,4-diamine (106-A-11) (216 mg, 0.81 mmol, 1.0 eq), caesium carbonate (528 mg, 1.62 mmol, 2.0 eq), tris(dibenzylideneacetone)dipalladium (40 mg, 0.04 mmol, 0.05 eq) and 9,9-dimethyl-4,5-bis(diphenylphosphino)xanthene (48 mg, 0.08 mmol, 0.1 eq) were mixed in toluene (50 mL). Under nitrogen protection, the reaction was placed in a preheated 110° C. oil bath and stirred to react for 3 hours. The mixture was concentrated under vacuo and purified by silica gel column chromatography (dichloromethane/methanol: 300:1˜150:1) to give the product 5-chloro-1-(2-(4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxy-5-nitrophenylamino)pyrimidin-4-yl)-3-methyl-1H-benzo[d]imidazol-2(3H)-one (150 mg, yield: 35%). LCMS (ESI): m/z 527[M+H]+.
- Step 5-2d: Preparation of 1-(2-(5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenylamino)pyrimidin-4-yl)-5-chloro-3-methyl-1H-benzo[d]imidazol-2(3H)-one (Intermediate 506-A-51): 5-Chloro-1-(2-(4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxy-5-nitrophenylamino)pyrimidin-4-yl)-3-methyl-1H-benzo[d]imidazol-2(3H)-one (505-A-51) (150 mg, 0.28 mmol, 1.0 eq) and ammonium chloride (126 mg, 2.38 mmol, 8.5 eq) were mixed in ethanol (30 mL) and water (7 mL) and heated to 50° C. Reduced iron powder (125 mg, 2.24 mmol, 8.0 eq) was added and the mixture was heated to 80° C. to react for 2 hours. After the reaction was completed, the mixture was filtered and the filtrate was concentrated which was extracted with dichloromethane. The organic phase was dried over anhydrous sodium sulfate and rotary evaporated in vacuo to leave a residue which was purified by silica gel column chromatography (dichloromethane/MeOH: 150:1˜50:1) to give the product 1-(2-(5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenylamino)pyrimidin-4-yl)-5-chloro-3-methyl-1H-benzo[d]imidazol-2(3H)-one (140 mg, yield: 99%). MS (ESI): m/z 497[M+H]+.
- The following Intermediates (506-A-52, 506-A-53, 506-A-57, 506-A-99, 506-A-133, 506-A-135) were prepared according to method 5-2, except that the Intermediate 503-51 therein was replaced by corresponding Intermediate 503.
- Preparation of Intermediate 506-A-52: The synthetic method was similar to method 5-2 of EXAMPLE 5, except that compound 5-chloro-1-(2-chloropyrimidin-4-yl)-3-methyl-1H-benzo[d]imidazol-2(3H)-one (503-51) therein was replaced by 1-(2-chloropyrimidin-4-yl)-3-methyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazole-5-carbonitrile (503-52). 1-(2-((5-Amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-3-methyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazole-5-carbonitrile (Intermediate 506-A-52) was prepared. LCMS (ESI): m/z 488[M+H]+.
- Preparation of Intermediate 506-A-53: The synthetic method was similar to method 5-2 of EXAMPLE 5, except that compound 5-chloro-1-(2-chloropyrimidin-4-yl)-3-methyl-1H-benzo[d]imidazol-2(3H)-one (503-51) therein was replaced by 1-(2-chloropyrimidin-4-yl)-5-methoxy-3-methyl-1,3-dihydro-2H-benzo[d]imidazol-2-one (503-53). 1-(2-((5-Amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-5-methoxy-3-methyl-1H-benzo[d]imidazol-2(3H)-one (Intermediate 506-A-53) was prepared. LCMS (ESI): m/z 493[M+H]+.
- Preparation of Intermediate 506-A-57: The synthetic method was similar to method 5-2 of EXAMPLE 5, except that compound 5-chloro-1-(2-chloropyrimidin-4-yl)-3-methyl-1H-benzo[d]imidazol-2(3H)-one (503-51) therein was replaced by 1-(2-chloro-5-methoxypyrimidin-4-yl)-3-methyl-1,3-dihydro-2H-benzo[d]imidazol-2-one (503-57). 1-(2-((5-Amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)-5-methoxypyrimidin-4-yl)-3-methyl-1H-benzo[d]imidazol-2(3H)-one (Intermediate 506-A-57) was prepared. LCMS (ESI): m/z 493[M+H]+.
- Preparation of Intermediate 506-A-99: The synthetic method was similar to method 5-2 of EXAMPLE 5, except that compound 5-chloro-1-(2-chloropyrimidin-4-yl)-3-methyl-1H-benzo[d]imidazol-2(3H)-one (503-51) therein was replaced by 5-chloro-1-(2-chloropyrimidin-4-yl)-3-cyclopropyl-1,3-dihydro-2H-benzo[d]imidazol-2-one (503-99). 1-(2-((5-Amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-5-chloro-3-cyclopropyl-1,3-dihydro-2H-benzo[d]imidazol-2-one (Intermediate 506-A-99) was prepared. LCMS (ESI): m/z 523[M+H]+.
- Preparation of Intermediate 506-A-133: The synthetic method was similar to method 5-2 of EXAMPLE 5, except that compound 5-chloro-1-(2-chloropyrimidin-4-yl)-3-methyl-1H-benzo[d]imidazol-2(3H)-one (503-51) therein was replaced by 1-(2-chloro-5-methoxypyrimidin-4-yl)-3-isopropyl-benzo[d]imidazol-2(3H)-one (503-133). 1-(2-((4-((2-(Dimethylamino)ethyl)(methyl)amino)-2-methoxy-5-aminophenyl)amino)-5-methoxypyrimidin-4-yl)-3-isopropyl-1H-benzo[d]imidazol-2(3H)-one (Intermediate 506-A-133) was obtained. LCMS (ESI): m/z 521[M+H]+.
- Preparation of Intermediate 506-A-135: The synthetic method was similar to method 5-2 of EXAMPLE 5, except that compound 5-chloro-1-(2-chloropyrimidin-4-yl)-3-methyl-1H-benzo[d]imidazol-2 (3H)-one (503-51) therein was replaced by 1-(2-chloro-5-(dimethylamino)pyrimidin-4-yl)-3-isopropyl-1,3-dihydro-2H-benzo[d]imidazol-2-one (503-135). 1-(2-((5-Amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl) amino)-5-(dimethylamino)pyrimidin-4-yl)-3-isopropyl-1,3-dihydro-2H-benzo[d]imidazol-2-one (Intermediate 506-A-135) was prepared. LCMS (ESI): m/z 534[M+H]+.
- Method 5-3: (Prepared Through Intermediates 503 and 103):
- Step 5-3a: Preparation of 1-(3-methylbut-2-enyl)-1H-benzo[d]imidazol-2(3H)-one (Intermediate 502-62): o-Nitroaniline (5 g, 36 mmol, 1.0 eq) was dissolved in N-methylpyrrolidone (100 mL) and to it was added cesium carbonate (23 g, 72 mmol, 2.0 eq). 1-Bromo-3-methyl-2-butene (7 g, 46.8 mmol, 1.3 eq) was then added dropwise to the above mixture and heated to 100° C. to react overnight. The reaction was quenched with water, extracted with ethyl acetate which was then washed with saturated brine several times. The organic phase was dried over anhydrous sodium sulfate, concentrated in vacuo to give a yellow oil which was finally purified by silica gel column chromatography (ethyl acetate/petroleum ether=1/51/3) to give the product N1-(3-methyl-2-butene) benzene-1,2-diamine (501-62) (3 g, yield: 40%). LCMS (ESI): m/z 207[M+H]+.
- Compound 501-62 (1.28 g, 7.2 mmol, 1.0 eq) was dissolved in tetrahydrofuran (100 mL) and to it was added triethylamine (1.5 mL, 10.8 mmol, 1.5 eq). Under nitrogen protection, N,N′-carbonyldiimidazole (3.5 g, 21.6 mmol, 3.0 eq) was added and the mixture was heated to 50° C. to react overnight. After the reaction was completed, the mixture was extracted with dichloromethane which was then concentrated in vacuo and purified by silica gel column chromatography (dichloromethane/methanol=200/1˜100/1) to give 1-(3-methylbut-2-enyl)-1H-benzo[d]imidazol-2(3H)-one (1.3 g, yield: 89%). LCMS (ESI): m/z 203[M+H]+.
- Step 5-3b: Preparation of 1-(2-chloropyrimidin-4-yl)-3-(3-methylbut-2-enyl)-1H-benzo[d]imidazol-2 (3H)-one (Intermediate 503-62): 1-(3-Methyl-2-butene)-1H-benzo[d]imidazol-2(3H)-one (502-63) (600 mg, 2.97 mmol, 1.0 eq) and cesium carbonate (1.93 g, 5.94 mmol, 2.0 eq) were mixed in N, N-dimethylformamide (10 mL). Under nitrogen protection, 2,4-dichloropyrimidine (659 mg, 4.45 mmol, 1.5 eq) was added and stirred to react at room temperature for 2 h. After the reaction was completed, a large amount of water was added and the solid was precipitated out which was filtered and dried to give the product 1-(2-chloropyrimidin-4-yl)-3-(3-methylbut-2-enyl)-1H-benzo[d]imidazol-2(3H)-one (755 mg, yield: 81%). LCMS (ESI): m/z 315[M+H]+.
- Step 5-3c: Preparation of 1-(2-(4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxy-5-nitrophenylamino)pyrimidin-4-yl)-3-(3-methylbut-2-enyl)-1H-benzo[d]imidazol-2 (3H)-one (Intermediate 505-A-62): 1-(2-Chloropyrimidin-4-yl)-3-(3-methylbut-2-enyl)-1H-benzo[d]imidazol-2(3H)-one (350 mg, 1.27 mmol, 1.0 eq) and 4-fluoro-2-methoxy-5-nitroaniline (103) (261 mg, 1.4 mmol, 1.3 eq) were mixed in isopropanol (60 mL) and then concentrated hydrochloric acid (1.5 mL) was added. The mixture was stirred and reacted at 100° C. overnight. After the reaction was completed, the temperature was lowered to room temperature and concentration was performed in vacuo to give a yellow solid. The solid obtained was dissolved in ethyl acetate, and then a saturated sodium carbonate solution was added to neutralize the remaining acid. The organic phase was concentrated in vacuo and recrystallized from petroleum ether/ethyl acetate (10/1) to give a yellow solid (213 mg, yield: 41%). LCMS (ESI): m/z 465 [M+H]+. The compound obtained above (213 mg, 0.458 mmol, 1.0 eq) was dissolved in tetrahydrofuran (30 mL) and then N, N, N-trimethylethylenediamine (140 mg, 1.37 mmol, 3.0 eq) and N, N-diisopropylethylamine (177 mg, 1.37 mmol, 3.0 eq) were added to the system. The reaction was stirred at 80° C. overnight. After the reaction was completed, the temperature was lowered to room temperature and then extraction was performed with ethyl acetate and water. The organic phase was washed with water and saturated brine several times. The organic phase was dried over anhydrous sodium sulfate and concentrated in vacuo and purified by silica gel column chromatography (dichloromethane/methanol=200/1˜100/1) to give the product 1-(2-(4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxy-5-nitrophenylamino)pyrimidin-4-yl)-3-(3-methylbut-2-enyl)-1H-benzo[d]imidazol-2 (3H)-one as a red solid (132 mg, yield: 52%). LCMS (ESI): m/z 547[M+H]+.
- Step 5-3d: Preparation of 1-(2-(5-amino-4-((2-(dimethylamino) ethyl)(methyl)amino)-2-methoxyphenyl amino)pyrimidin-4-yl)-3-(3-methylbut-2-enyl)-1H-benzo[d]imidazol-2 (3H)-one (Intermediate 506-A-62): 1-(2-(4-((2-(Dimethylamino)ethyl)(methyl)amino)-2-methoxy-5-nitrophenylamino)pyrimidin-4-yl)-3-(3-methylbut-2-enyl)-1H-benzo[d]imidazol-2 (3H)-one (505-A-62) (132 mg, 0.24 mmol, 1.0 eq) and ammonium chloride (108 mg, 2.04 mmol, 8.5 eq) were mixed in ethanol (40 mL) and water (10 mL) and heated to 50° C. Reduced iron powder (108 mg, 1.92 mmol, 8.0 eq) was then added and the mixture was heated to 80° C. to react for 2 hours. After the reaction was completed, it was filtered and the filtrate was concentrated and extracted with dichloromethane. The organic phase was dried over anhydrous sodium sulfate, rotary evaporated in vacuo and purified by silica gel column chromatography (dichloromethane/methanol=200/1˜50/1) to give the product 1-(2-(4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxy-5-nitrophenyl amino)pyrimidin-4-yl)-3-(3-methylbut-2-enyl)-1H-benzo[d]imidazol-2 (3H)-one (110 mg, yield: 88%). LCMS (ESI): m/z 517[M+H]+.
- The following Intermediates (506-A-50, 506-A-63, 506-A-91, 506-A-98, 506-A-101, 506-A-102, 506-A-105, 506-A-118, 506-A-120, 506-A-125, 506-A-127, 506-A-128, 506-A-132, 506-A-138, 506-A-139) were prepared according to method 5-3, except that the Intermediate 502-62 therein was replaced by corresponding Intermediate 502.
- Preparation of Intermediate 506-A-50: The synthetic method was similar to method 5-3 of EXAMPLE 5, except that compound 1-(3-methylbut-2-enyl)-1H-benzo[d]imidazol-2(3H)-one (502-62) therein was replaced by 6-fluoro-1-methyl-1H-benzo[d]imidazol-2(3H)-one (502-50). 1-(2-((5-Amino-4-((2-(dimethylamino) ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-5-fluoro-3-methyl-1,3-dihydro-2H-benzo[d]imidazol-2-one (Intermediate 506-A-50) was prepared. LCMS (ESI): m/z 481 [M+H]+.
- Preparation of Intermediate 506-A-62: The synthetic method was similar to method 5-3 of EXAMPLE 5, except that compound 1-(3-methylbut-2-enyl)-1H-benzo[d]imidazol-2(3H)-one (502-62) therein was replaced by 1-(3-methylbut-2-enyl)-1H-benzo[d]imidazol-2(3H)-one (502-62). 1-(2-(5-Amino-4-((2-(dimethylamino) ethyl)(methyl)amino)-2-methoxyphenylamino)pyrimidin-4-yl)-3-(3-methylbut-2-enyl)-1H-benzo[d]imidazol-2(3H)-one (Intermediate 506-A-62) was prepared. LCMS (ESI): m/z 517 [M+H]+.
- Preparation of Intermediate 506-A-63: The synthetic method was similar to method 5-3 of EXAMPLE 5, except that compound 1-(3-methylbut-2-enyl)-1H-benzo[d]imidazol-2(3H)-one (502-62) therein was replaced by 1-cyclopropylmethyl-1,3-dihydro-2H-benzo[d]imidazol-2-one (502-63). 1-(2-((5-Amino-4-((2-(dimethylamino)ethyl) (methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-3-(cyclopropylmethyl)-1,3-dihydro-2H-benzo[d]imidazol-2-one (Intermediate 506-A-63) was prepared. LCMS (ESI): m/z 503 [M+H]+.
- Preparation of Intermediate 506-A-91: The synthetic method was similar to method 5-3 of EXAMPLE 5, except that compound 1-(3-methylbut-2-enyl)-1H-benzo[d]imidazol-2(3H)-one (502-62) therein was replaced by 6-fluoro-1-isopropyl-1,3-dihydro-2H-benzo[d]imidazol-2 (3H)-one (502-91). 1-(2-(5-Amino-4-((2-(dimethylamino)ethyl) (methyl)amino)-2-methoxyphenylamino)pyrimidin-4-yl)-5-fluoro-3-isopropyl-1H-benzo[d]imidazol-2(3H)-one (Intermediate 506-A-91) was obtained. LCMS (ESI): m/z 509 [M+H]+.
- Preparation of Intermediate 506-A-98: The synthetic method was similar to method 5-3 of EXAMPLE 5, except that compound 1-(3-methylbut-2-enyl)-1H-benzo[d]imidazol-2(3H)-one (502-62) therein was replaced by 1-cyclopropyl-6-fluoro-1H-benzo[d]imidazol-2(3H)-one (502-98). 1-(2-(5-Amino-4-((2-(dimethylamino)ethyl) (methyl)amino)-2-methoxyphenylamino)pyrimidin-4-yl)-3-cyclopropyl-5-fluoro-1H-benzo[d]imidazol-2(3H)-one (Intermediate 506-A-98) was prepared. LCMS (ESI): m/z 507 [M+H]+.
- Preparation of Intermediate 506-A-101: The synthetic method was similar to method 5-3 of EXAMPLE 5, except that compound 1-(3-methylbut-2-enyl)-1H-benzo[d]imidazol-2(3H)-one (502-62) therein was replaced by 3-cyclopropyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazole-5-cyano (502-101). 1-(2-((5-Amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-3-cyclopropyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazole-5-carbonitrile (Intermediate 506-A-101) was prepared. LCMS (ESI): m/z 514 [M+H]+.
- Preparation of Intermediate 506-A-102: The synthetic method was similar to method 5-3 of EXAMPLE 5, except that compound 1-(3-methylbut-2-enyl)-1H-benzo[d]imidazol-2(3H)-one (502-62) therein was replaced by 1-cyclopropyl-6-methoxy-1H-benzo[d]imidazol-2 (3H)-one (502-102). 1-(2-((5-Amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-3-cyclopropyl-5-methoxy-1,3-dihydro-2H-benzo[d]imidazol-2-one (Intel mediate 506-A-102) was obtained. LCMS (ESI): m/z 519 [M+H]+.
- Preparation of Intermediate 506-A-105: The synthetic method was similar to method 5-3 of EXAMPLE 5, except that compound 1-(3-methylbut-2-enyl)-1H-benzo[d]imidazol-2(3H)-one (502-62) therein was replaced by 1-cyclopropylmethyl-6-fluoro-1,3-dihydro-2H-benzo[d]imidazol-2 (3H)-one (502-105). 1-(2-(5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenylamino)pyrimidin-4-yl)-3-(cyclopropylmethyl)-5-fluoro-1H-benzo[d]imidazol-2(3H)-one (Intermediate 506-A-105) was prepared. LCMS (ESI): m/z 521 [M+H]+.
- Preparation of Intermediate 506-A-118 (the synthetic method was similar to method 5-3 of EXAMPLE 5): 4-Fluoro-2-methyl-5-nitroaniline (103-118) (340 mg, 2.0 mmol, 1.0 eq), 1-(2-chloropyrimidin-4-yl)-3-methyl-1H-benzo[d]imidazol-2 (3H)-one (600 mg, 2.3 mmol, 1.15 eq) and concentrated hydrochloric acid (5 mL, 59.0 mmol, 29.5 eq) were added to isopropanol (100 mL) and then reacted at 100° C. overnight. The temperature was lowered to room temperature and neutralization was performed with a saturated aqueous sodium carbonate solution. The mixture was then extracted with ethyl acetate which was then washed with water and saturated brine, dried over anhydrous sodium sulfate, concentrated in vacuo and purified by silica gel column chromatography (eluent: ethyl acetate/petroleum ether=1/1) to give 1-(2-(4-fluoro-2-methyl-5-nitroanilino) pyrimidin-4-yl)-3-methyl-1, 3-dihydro-2H-benzo[d]imidazole-2-one as a white solid (120 mg, yield: 15%). LCMS (ESI): m/z 395[M+H]+. The solid obtained above (120 mg, 0.3 mmol, 1.0 eq), N, N, N′-trimethyl-1,2-ethanediamine (0.08 mL, 0.6 mmol, 2.0 eq) and diisopropylethylamine (0.1 mL, 0.6 mmol, 2.0 eq) were added into tetrahydrofuran (30 mL), and heated to reflux and stirred overnight. The reaction temperature was lowered to room temperature and concentration was performed in vacuo. The residue was dissolved in ethyl acetate which was then washed with water and brine, dried over anhydrous sodium sulfate and concentrated in vaccuo to give 1-(2-(4-((2-dimethylamino)ethyl) (methyl) amino)-2-methyl-5-nitrophenylamino) pyrimidin-4-yl)-3-methyl-1,3-dihydro-2H-benzo[d]imidazol-2-one (505-A-118) as a red solid (140 mg, yield: 98.6%). LCMS (ESI): m/z 476[M+H]+. The solid obtained above (140 mg, 0.3 mmol, 1.0 eq) and ammonium chloride (128 mg, 2.4 mmol, 8.0 eq) were added to a mixed liquid of ethanol (30 mL) and water (6 mL) and heated to 65° C. Reduced iron powder (143 mg, 2.4 mmol, 8.5 eq) was then added in portions. The mixture was heated to reflux to react for 1 hour. The reaction temperature was lowered to room temperature and dichloromethane was added and filtered. The filtrate was washed with water and brine. The organic phase was dried over anhydrous sodium sulfate, concentrated in vacuo and purified by silica gel column chromatography (eluent: dichloromethane/methanol=40/1˜15/1) to give 1-(2-(5-amino-4-((2-dimethylamino)ethyl) (methyl) amino)-2-methylphenylamino) pyrimidin-4-yl)-3-methyl-1,3-dihydro-2H-benzo[d]imidazol-2-one (506-A-118) (72 mg, yield: 54%). LCMS (ESI): m/z 446[M+H]+.
- Preparation of Intermediate 506-A-120: The synthetic method was similar to method 5-3 of EXAMPLE 5 for the preparation of Intermediate 506-A-118, except that compound 4-fluoro-2-methyl-5-nitroaniline (103-118) therein was replaced by 4-fluoro-2-(2-methoxy-ethoxy)-5-nitroaniline (103-120). 1-{2-[5-Amino-4-[(2-dimethylamino-ethyl)-methyl-amino]-2-(2-methoxy-ethoxy)-phenyl amino]-pyrimidin-4-yl}-3-methyl-1,3-dihydro-benzoimidazol-2-one (Intermediate 506-A-120) was prepared. LCMS (ESI): m/z 507 [M+H]+.
- Preparation of Intermediate 506-A-125: The synthetic method was similar to method 5-3 of EXAMPLE 5 for the preparation of Intermediate 506-A-118, except that compound 4-fluoro-2-methyl-5-nitroaniline (103-118) therein was replaced by 4-fluoro-3-nitroaniline (103-125). 1-(2-((3-Amino-4-((2-(dimethylamino)ethyl)(methyl) amino)phenyl)amino) pyrimidin-4-yl)-3-methyl-1,3-dihydro-2H-benzo[d]imidazol-2-one (Intermediate 506-A-125) was prepared. LCMS (ESI): m/z 433 [M+H]+.
- Preparation of Intermediate 506-A-127: The synthetic method was similar to method 5-3 of EXAMPLE 5 for the preparation of Intermediate 506-A-118, except that compound 1-(2-Chloropyrimidin-4-yl)-3-methyl-1H-benzo[d]imidazol-2(3H)-one therein was replaced by 1-(2-Chloropyrimidin-4-yl)-3-isopropyl-1,3-dihydro-2H-benzo[d]imidazol-2-one. 1-(2-((5-Amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methylphenyl)amino)pyrimidin-4-yl)-3-isopropyl-1,3-dihydro-2H-benzo[d]imidazol-2-one (Intermediate 506-A-127) was prepared. LCMS (ESI): m/z 475 [M+H]+.
- Preparation of Intermediate 506-A-128: The synthetic method was similar to method 5-3 of EXAMPLE 5 for the preparation of Intermediate 506-A-125, except that compound 1-(2-Chloropyrimidin-4-yl)-3-methyl-1H-benzo[d]imidazol-2 (3H)-one therein was replaced by 1-(2-Chloropyrimidin-4-yl)-3-isopropyl-1,3-dihydro-2H-benzo[d]imidazol-2-one. 1-(2-((4-((2-(Dimethylamino)ethyl)(methyl)amino)-3-aminophenyl)amino)pyrimidin-4-yl)-3-isopropyl-1H-benzo[d]imidazol-2 (3H)-one (Intermediate 506-A-128) was prepared. LCMS (ESI): m/z 461 [M+H]+.
- Preparation of Intermediate 506-A-132: The synthetic method was similar to method 5-3 of EXAMPLE 5 for the preparation of Intermediate 506-A-125, except that compound 4-fluoro-3-nitroaniline (103-125) therein was replaced by 4-fluoro-2-isopropyl-5-nitroaniline (103-132). 1-(2-((5-Amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-isopropylphenyl)amino)pyrimidin-4-yl)-3-methyl-1,3-dihydro-2H-benzo[d]imidazol-2-one (Intermediate 506-A-127 was obtained. LCMS (ESI): m/z 475 [M+H]+.
- Preparation of Intermediate 506-A-138: The synthetic method was similar to method 5-3 of EXAMPLE 5, except that compound 1-(3-methylbut-2-enyl)-1H-benzo[d]imidazol-2(3H)-one (502-62) therein was replaced by compound 1-isopropyl-6-methoxy-1H-benzo[d]imidazol-2(3H)-one (502-138). 1-(2-((4-((2-(Dimethylamino)ethyl)(methyl) amino)-2-methoxy-5-aminophenyl)amino)pyrimidin-4-yl)-3-isopropyl-5-methoxy-1H-benzo[d]imidazol-2 (3H)-one (Intermediate 506-A-138) was obtained. LCMS (ESI): m/z 521 [M+H]+.
- Preparation of Intermediate 506-A-138: The synthetic method was similar to method 5-3 of EXAMPLE 5, except that compound 1-(3-methylbut-2-enyl)-1H-benzo[d]imidazol-2(3H)-one (502-62) therein was replaced by compound 1-(2-chloropyrimidin-4-yl)-5-hydroxy-3-isopropyl-1H-benzo[d]imidazol-2 (3H) (502-139). 1-(2-((4-((2-(Dimethylamino)ethyl)(methyl)amino)-2-methoxy-5-aminophenyl)amino)pyrimidin-4-yl)-5-hydroxy-3-isopropyl-1H-benzo[d]imidazol-2(3H)-one (Intermediate 506-A-139) was obtained. LCMS (ESI): m/z 507 [M+H]+.
- N4-(4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-yl)-N1-(2-(dimethylamino)ethyl)-5-methoxy-N1-methylbenzene-1,2,4-triamine (403-A-5) (90 mg, 0.26 mmol, 1.0 eq), triethylamine (0.09 mL, 0.65 mmol, 2.5 eq), HATU (118 mg, 0.31 mmol, 1.2 eq) and acrylic acid (602-3) (23 mg, 0.31 mmol, 1.2 eq) were added into dichloromethane (15 mL) and stirred for 0.5 hour at room temperature. The stirring was then stopped when the reaction was stopped and a saturated aqueous sodium carbonate solution was added and partitioned. The aqueous phase was extracted with dichloromethane twice. The organic phase was combined and washed with diluted aqueous hydrochloric acid and saturated brine in sequence, dried, concentrated in vacuo and purified by prep-TLC (eluent: dichloromethane/methanol 25: 1) to give N-(5-((4-(1H-indol-1-yl)-5-(trifluoromethyl) pyrimidin-2-yl)amino)-2-((2-(dimethylamino)ethyl)(methyl)amino)-4-methoxyphenyl)acrylamide as a light yellow solid (25 mg, yield: 17%).
- The characterization data of
Compound 5 were: LCMS (ESI): m/z 554 [M+H]+; m.p.: 161-162° C.; 1H NMR (500 MHz, DMSO-d6) δ 9.98 (s, 1H), 9.61 (s, 1H), 8.86 (s, 1H), 8.32 (s, 1H), 7.71 (s, 1H), 7.58 (s, 1H), 7.48 (s, 1H), 7.11 (s, 2H), 7.00 (s, 1H), 6.73 (s, 1H), 6.42 (s, 1H), 6.23 (d, J=16.9 Hz, 1H), 5.75 (d, J=9.9 Hz, 1H), 3.79 (s, 3H), 2.87 (s, 2H), 2.69 (s, 3H), 2.21 (s, 8H). - The synthetic method was similar to that described in EXAMPLE 6, except that N4-(4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-yl)-N1-(2-(dimethylamino)ethyl)-5-methoxy-N1-methylbenzene-1,2,4-triamine (403-A-5) therein was replaced by N4-(4-(1H-indol-1-yl)-5-methoxypyrimidin-2-yl)-N1-(2-(dimethylamino)ethyl)-5-methoxy-N1-methylbenzene-1,2,4-triamine (403-A-6) (270 mg, 0.58 mmol, 1.0 eq). N-(5-((4-(1H-Indol-1-yl)-5-methoxypyrimidin-2-yl)amino)-2-((2-(dimethylamino)ethyl)(methyl)amino)-4-methoxyphenyl)acrylamide was obtained as a beige solid (35 mg, yield: 12%).
- The characterization data of the
Compound 6 were: LCMS (ESI): m/z 516 [M+H]+. m.p.: 143.3-147.8° C.; 1H NMR (500 MHz, DMSO-d6) δ 10.09 (s, 1H), 8.64 (s, 1H), 8.45 (s, 1H), 8.22 (s, 1H), 8.00 (d, J=19.9 Hz, 2H), 7.57 (s, 1H), 7.11 (s, 2H), 7.01 (s, 1H), 6.70 (s, 1H), 6.38 (m, 1H), 6.21 (d, J=16.6 Hz, 1H), 5.74 (d, J=9.2 Hz, 1H), 3.83 (d, J=34.2 Hz, 6H), 2.86 (s, 2H), 2.71 (s, 3H), 2.29 (s, 2H), 2.19 (s, 6H). - The synthetic method was similar to that described in EXAMPLE 6, except that N4-(4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-yl)-N1-(2-(dimethylamino)ethyl)-5-methoxy-N1-methylbenzene-1,2,4-triamine (403-A-5) therein was replaced by N4-(4-(1H-indol-1-yl)-5-methylpyrimidin-2-yl)-N1-(2-(dimethylamino)ethyl)-5-methoxy-N1-methylbenzene-1,2,4-triamine (99 mg, 0.22 mmol, 1.0 eq). N-(5-((4-(1H-Indol-1-yl)-5-methylpyrimidin-2-yl) amino)-2-((2-(dimethylamino)ethyl)(methyl)amino)-4-methoxyphenyl)acrylamide was obtained as a beige solid (60 mg, yield: 54.5%).
- The characterization data of
Compound 8 were: LCMS (ESI): m/z 500 [M+H]+. 1H NMR (500 MHz, DMSO-d6) δ 9.99 (s, 1H), 8.61 (s, 1H), 8.46 (s, 1H), 8.32 (s, 1H), 7.74 (d, J=3.4 Hz, 1H), 7.68 (d, J=7.3 Hz, 1H), 7.60 (dd, J=6.3, 2.4 Hz, 1H), 7.11 (m, 2H), 6.98 (s, 1H), 6.69 (d, J=3.3 Hz, 1H), 6.39 (dd, J=16.8, 10.1 Hz, 1H), 6.23 (dd, J=16.9, 1.8 Hz, 1H), 5.74 (m, 1H), 3.80 (s, 3H), 2.86 (s, 2H), 2.67 (d, J=9.8 Hz, 3H), 2.30 (s, 2H), 2.20 (s, 6H), 2.17 (s, 3H). - The synthetic method was similar to that described in EXAMPLE 6, except that N4-(4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-yl)-N1-(2-(dimethylamino)ethyl)-5-methoxy-N1-methylbenzene-1,2,4-triamine (403-A-5) therein was replaced by N4-(5-(dimethylamino)-4-(1H-indol-1-yl)pyrimidin-2-yl)-N1-(2-(dimethylamino)ethyl)-5-methoxy-N1-methylbenzene-1,2,4-triamine (403-A-10) (216 mg, 0.4695 mmol, 1.0 eq). N-(5-(5-(Dimethylamino)-4-(1H-indol-1-yl)pyrimidin-2-ylamino)-2-((2-(dimethylamino)ethyl)(methyl)amino)-4-methoxyphenyl)acrylamide was obtained as a yellow solid (60 mg, yield: 19.2%).
- The characterization data of
Compound 10 were: LCMS (ESI): m/z 529 [M+H]±; m.p.: 154-155° C.; 1H NMR (500 MHz, DMSO-d6) δ 10.03 (s, 1H), 8.69 (s, 1H), 8.38 (s, 1H), 8.13 (m, 2H), 7.87 (dd, J=6.0, 3.3 Hz, 1H), 7.57 (m, 1H), 7.10 (m, 2H), 6.98 (s, 1H), 6.69 (d, J=3.5 Hz, 1H), 6.39 (dd, J=16.9, 10.1 Hz, 1H), 6.23 (dd, J=16.9, 1.8 Hz, 1H), 5.74 (dd, J=8.7, 3.0 Hz, 1H), 3.81 (s, 3H), 2.86 (s, 2H), 2.69 (s, 3H), 2.47 (s, 6H), 2.29 (s, 2H), 2.20 (s, 6H). - The synthetic method was similar to that described in EXAMPLE 6, except that N4-(4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-yl)-N1-(2-(dimethylamino)ethyl)-5-methoxy-N1-methylbenzene-1,2,4-triamine (403-A-5) therein was replaced by N4-(4-(1H-indol-1-yl)-5-(methylamino)pyrimidin-2-yl)-N1-(2-(dimethylamino)ethyl)-5-methoxy-N1-methylbenzene-1,2,4-triamine (403-A-11) (216 mg, 0.4695 mmol, 1.0 eq). N-(5-(4-(1H-Indol-1-yl)-5-(methylamino)pyrimidin-2-ylamino)-2-((2-(dimethylamino)ethyl)(methyl)amino)-4-methoxyphenyl)acrylamide was obtained as a yellow solid (30 mg, yield: 12.4%).
- The characterization data of Compound 11 were: LCMS (ESI): m/z 515 [M+H]+; m.p.: 154-156° C.; 1H NMR (500 MHz, DMSO-d6) δ 10.03 (s, 1H), 8.85 (s, 1H), 8.17 (s, 1H), 7.85 (d, J=3.4 Hz, 1H), 7.61 (m, 3H), 7.14 (dt, J=19.9, 7.0 Hz, 2H), 6.95 (s, 1H), 6.71 (d, J=3.3 Hz, 1H), 6.38 (dd, J=16.9, 10.1 Hz, 1H), 6.24 (d, J=15.6 Hz, 1H), 5.74 (m, 1H), 4.70 (m, 1H), 3.81 (d, J=8.3 Hz, 3H), 2.85 (s, 2H), 2.68 (m, 6H), 2.26 (s, 2H), 2.19 (s, 6H).
- The synthetic method was similar to that described in EXAMPLE 6, except that N4-(4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-yl)-N1-(2-(dimethylamino)ethyl)-5-methoxy-N1-methylbenzene-1,2,4-triamine (403-A-5) therein was replaced by N1-(2-(dimethylamino)ethyl)-5-methoxy-N4-(4-(5-methoxy-1H-indol-1-yl)pyrimidin-2-yl)-N1-methylbenzene-1,2,4-triamine (403-A-27) (100 mg, 0.206 mmol, 1.0 eq). N-(2-((2-(Dimethylamino)ethyl)(methyl)amino)-4-methoxy-5-((4-(5-methoxy-1H-indol-1-yl)pyrimidin-2-yl)amino)phenyl)acrylamide was obtained as a yellow solid (67 mg, yield: 59.98%).
- The characterization data of Compound 27 were: LCMS (ESI): m/z 516 [M+H]+. m.p.: 117-118° C.; 1H NMR (500 MHz, DMSO-d6) δ 10.06 (s, 1H), 8.55 (d, J=12.9 Hz, 2H), 8.33 (m, 2H), 8.09 (s, 1H), 7.07 (m, 3H), 6.67 (d, J=11.2 Hz, 2H), 6.40 (dd, J=16.2, 11.0 Hz, 1H), 6.19 (d, J=16.9 Hz, 1H), 5.72 (d, J=10.0 Hz, 1H), 3.76 (s, 6H), 2.92 (s, 2H), 2.75 (d, J=1.8 Hz, 3H), 2.34 (s, 2H), 2.21 (s, 6H).
- The synthetic method was similar to that described in EXAMPLE 6, except that N4-(4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-yl)-N1-(2-(dimethylamino)ethyl)-5-methoxy-N1-methylbenzene-1,2,4-triamine (403-A-5) therein was replaced by N1-(2-(dimethylamino)ethyl)-N4-(4-(5-fluoro-1H-indol-1-yl)pyrimidin-2-yl)-5-methoxy-N1-methylbenzene-1,2,4-triamine (403-A-28) (400 mg, 0.9 mmol, 1.0 eq). N-(2-((2-(Dimethylamino)ethyl)(methyl)amino)-5-((4-(5-fluoro-1H-indol-1-yl)pyrimidin-2-yl)amino)-4-methoxyphenyl)acrylamide was obtained as a yellow solid (230 mg, yield: 51%).
- The characterization data of Compound 28 were: LCMS (ESI): m/z 504 [M+H]+. m.p.: 168-170° C.; 1H NMR (500 MHz, DMSO-d6) δ 10.04 (s, 1H), 8.65 (s, 1H), 8.51 (s, 1H), 8.41 (m, 2H), 8.20 (s, 1H), 7.37 (d, J=7.7 Hz, 1H), 7.12 (d, J=4.9 Hz, 1H), 7.06 (s, 1H), 6.87 (s, 1H), 6.76 (s, 1H), 6.41 (m, 1H), 6.19 (d, J=16.8 Hz, 1H), 5.73 (d, J=9.2 Hz, 1H), 3.78 (s, 3H), 2.92 (s, 2H), 2.75 (s, 3H), 2.35 (s, 2H), 2.21 (s, 6H).
- The synthetic method was similar to that described in EXAMPLE 6, except that N4-(4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-yl)-N1-(2-(dimethylamino)ethyl)-5-methoxy-N1-methylbenzene-1,2,4-triamine (403-A-5) therein was replaced by N1-(2-(dimethylamino)ethyl)-N4-(4-(6-fluoro-1H-indol-1-yl)pyrimidin-2-yl)-5-methoxy-N1-methylbenzene-1,2,4-triamine (403-A-29) (162 mg, 0.36 mmol, 1.0 eq). N-(2-((2-(Dimethylamino)ethyl)(methyl)amino)-5-((4-(6-fluoro-1H-indol-1-yl)pyrimidin-2-yl)amino)-4-methoxyphenyl)acrylamide was obtained as a yellow solid (60 mg, yield: 33.15%).
- The characterization data of Compound 29 were: LCMS (ESI): m/z 504 [M+H]+. M.p.: 164-165° C.; 1H NMR (500 MHz, DMSO-d6) δ 10.04 (s, 1H), 8.78 (s, 1H), 8.48 (s, 1H), 8.38 (d, J=5.7 Hz, 1H), 8.22 (d, J=9.7 Hz, 1H), 8.12 (d, J=3.7 Hz, 1H), 7.57 (dd, J=8.6, 5.7 Hz, 1H), 7.11 (d, J=5.7 Hz, 1H), 7.01 (m, 2H), 6.78 (d, J=3.6 Hz, 1H), 6.37 (dd, J=16.9, 10.2 Hz, 1H), 6.17 (dd, J=16.9, 1.8 Hz, 1H), 5.71 (m, 1H), 3.76 (s, 3H), 2.90 (s, 2H), 2.74 (s, 3H), 2.36 (s, 2H), 2.22 (s, 6H).
- The synthetic method was similar to that described in EXAMPLE 6, except that N4-(4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-yl)-N1-(2-(dimethylamino)ethyl)-5-methoxy-N1-methylbenzene-1,2,4-triamine (403-A-5) therein was replaced by N1-(2-(dimethylamino)ethyl)-N4-(4-(4-fluoro-1H-indol-1-yl)pyrimidin-2-yl)-5-methoxy-N1-methylbenzene-1,2,4-triamine (403-A-30) (195 mg, 0.43 mmol, 1.0 eq). N-(2-((2-(Dimethylamino)ethyl)(methyl)amino)-5-((4-(4-fluoro-1H-indol-1-yl)pyrimidin-2-yl)amino)-4-methoxyphenyl)acrylamide was obtained as a yellow solid (60 mg, yield: 33.15%).
- The characterization data of Compound 30 were: LCMS (ESI): m/z 504 [M+H]+. M.p.: 165.5-166.5° C.; 1H NMR (500 MHz, DMSO-d6) δ 10.06 (s, 1H), 8.69 (s, 1H), 8.52 (s, 1H), 8.42 (d, J=5.6 Hz, 1H), 8.21 (dd, J=27.4, 5.8 Hz, 2H), 7.15 (d, J=5.7 Hz, 1H), 7.07 (m, 2H), 6.96 (dd, J=9.8, 8.2 Hz, 1H), 6.84 (d, J=3.6 Hz, 1H), 6.40 (dd, J=16.9, 10.2 Hz, 1H), 6.20 (dd, J=16.9, 1.8 Hz, 1H), 5.72 (dd, J=10.2, 1.6 Hz, 1H), 3.77 (s, 3H), 2.91 (t, J=5.7 Hz, 2H), 2.74 (d, J=10.0 Hz, 3H), 2.35 (d, J=5.3 Hz, 2H), 2.21 (s, 6H).
- The synthetic method was similar to that described in EXAMPLE 6, except that N4-(4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-yl)-N1-(2-(dimethylamino)ethyl)-5-methoxy-N1-methylbenzene-1,2,4-triamine (403-A-5) therein was replaced by N4-(4-(5-chloro-1H-indol-1-yl)pyrimidin-2-yl)-N1-(2-(dimethylamino)ethyl)-5-methoxy-N1-methylbenzene-1,2,4-triamine (300 mg, 0.65 mmol, 1.0 eq). N-(5-((4-(5-Chloro-1H-indol-1-yl)pyrimidin-2-yl)amino)-2-((2-(dimethylamino)ethyl)(methyl)amino)-4-methoxyphenyl)acrylamide was obtained as a beige solid (85 mg, yield: 25%).
- The characterization data of Compound 31 were: LCMS (ESI): m/z 520 [M+H]+. M.p.: 150-153° C.; 1H NMR (500 MHz, DMSO-d6) δ 10.06 (s, 1H), 8.67 (s, 1H), 8.51 (s, 1H), 8.41 (d, J=5.6 Hz, 2H), 8.20 (d, J=3.6 Hz, 1H), 7.65 (d, J=2.1 Hz, 1H), 7.12 (d, J=5.7 Hz, 1H), 7.05 (m, 2H), 6.76 (d, J=3.5 Hz, 1H), 6.41 (dd, J=16.9, 10.2 Hz, 1H), 6.18 (dd, J=17.0, 1.8 Hz, 1H), 5.73 (dd, J=10.2, 1.6 Hz, 1H), 3.77 (d, J=7.7 Hz, 3H), 2.93 (t, J=5.7 Hz, 2H), 2.75 (d, J=8.8 Hz, 3H), 2.35 (t, J=5.5 Hz, 2H), 2.22 (s, 6H).
- The synthetic method was similar to that described in EXAMPLE 6, except that N4-(4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-yl)-N1-(2-(dimethylamino)ethyl)-5-methoxy-N1-methylbenzene-1,2,4-triamine (403-A-5) therein was replaced by 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-1H-indole-5-carbonitrile (403-A-33) (100 mg, 0.394 mmol, 1 eq). N-(5-((4-(5-Cyano-1H-indol-1-yl)pyrimidin-2-yl)amino)-2-((2-(dimethylamino)ethyl)(methyl) amino)-4-methoxyphenyl)acrylamide was obtained as a yellow solid (35 mg, yield: 31.53%).
- The characterization data of Compound 33 were: LCMS (ESI): m/z 511 [M+H]+. M.p.: 127-128° C.; 1H NMR (500 MHz, DMSO-d6) δ 10.08 (s, 1H), 8.83 (s, 1H), 8.59 (s, 1H), 8.46 (m, 2H), 8.32 (d, J=3.7 Hz, 1H), 8.14 (d, J=1.1 Hz, 1H), 7.40 (d, J=8.6 Hz, 1H), 7.18 (d, J=5.7 Hz, 1H), 7.07 (s, 1H), 6.90 (d, J=3.6 Hz, 1H), 6.41 (dd, J-17.0, 10.2 Hz, 1H), 6.17 (dd, J=16.9, 1.8 Hz, 1H), 5.73 (dd, J=10.2, 1.7 Hz, 1H), 3.78 (s, 3H), 2.92 (t, J=5.8 Hz, 2H), 2.76 (s, 3H), 2.34 (t, J=5.7 Hz, 2H), 2.21 (s, 6H).
- N1-(2-(dimethylamino)ethyl)-5-methoxy-N1-methyl-N4-(4-(5-nitro-1H-indol-1-yl)pyrimidin-2-yl)benzene-1,2,4-triamine (403-A-34) (0.13 g, 0.27 mmol) and triethylamine (55 mg, 055 mmol) were dissolved in tetrahydrofuran (10 mL) and cooled to −70° C. Acryloyl chloride (25 mg, 0.27 mmol) was then added dropwise slowly while stirring. The mixture was reacted at −70° C. for 2 hours and methanol (1 mL) and water (15 mL) were added. The mixture was extracted with dichloromethane (15 mL) three times and the organic phase was dried, concentrated and purified by column chromatography (dichloromethane/methanol=10:1) to give N-{2-[(2-dimethylamino-ethyl)-methyl-amino]-4-methoxy-5-[4-(5-nitro-indol-1-yl)-pyrimidin-2-ylamino]-phenyl}-acryl amide as a yellow solid (90 mg, yield: 62.2%).
- The characterization data of Compound 34 were: LCMS (ESI): m/z 531[M+H]+. 1H NMR (500 MHz, DMSO-d6) δ 10.11 (s, 1H), 8.80 (s, 1H), 8.53 (m, 4H), 8.36 (d, J=3.6 Hz, 1H), 7.88 (d, J=8.0 Hz, 1H), 7.19 (d, J=5.6 Hz, 1H), 7.09 (s, 1H), 7.04 (d, J=3.6 Hz, 1H), 6.39 (dd, J=16.9, 10.2 Hz, 1H), 6.17 (dd, J=17.0, 1.7 Hz, 1H), 5.71 (m, 1H), 3.78 (s, 3H), 2.94 (t, J=5.7 Hz, 2H), 2.77 (s, 3H), 2.35 (t, J=5.7 Hz, 2H), 2.21 (s, 6H).
- The synthetic method was similar to that described in EXAMPLE 6, except that N4-(4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-yl)-N1-(2-(dimethylamino)ethyl)-5-methoxy-N1-methylbenzene-1,2,4-triamine (403-A-5) therein was replaced by 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-1H-indol-5-ol (403-A-36) (111 mg, 0.248 mmol, eq). N-(2-((2-(dimethylamino)ethyl)(methyl)amino)-5-((4-(5-hydroxy-1H-indol-1-yl)pyrimidin-2-yl)amino)-4-methoxyphenyl)acrylamide was obtained as a yellow solid (55 mg, yield: 44.12%).
- The characterization data of Compound 36 were: LCMS (ESI): m/z 502 [M+H]+. M.p.: 218-219° C.; 1H NMR (500 MHz, DMSO-d6) δ 10.08 (s, 1H), 9.00 (s, 1H), 8.53 (d, J=10.0 Hz, 2H), 8.33 (d, J=5.7 Hz, 1H), 8.17 (d, J=8.8 Hz, 1H), 8.03 (d, J-3.6 Hz, 1H), 7.05 (d, J=4.7 Hz, 2H), 6.88 (d, J=2.3 Hz, 1H), 6.58 (m, 2H), 6.39 (dd, J=16.9, 10.2 Hz, 1H), 6.20 (dd, J=16.9, 1.8 Hz, 1H), 5.73 (d, J=11.7 Hz, 1H), 3.77 (s, 3H), 2.91 (t, J=5.6 Hz, 2H), 2.76 (s, 3H), 2.34 (t, J=5.4 Hz, 2H), 2.22 (s, 6H).
- N4-(4-(5-(2-((tert-butyldiphenylsilyl)oxy)ethoxy)-1H-indol-1-yl)pyrimidin-2-yl)-N1-(2-(dimethylamino)ethyl)-5-methoxy-N1-methylbenzene-1,2,4-triamine (403-A-37) (320 mg, 0.41 mmol, 1.0 eq), triethylamine (0.1 mL, 0.8 mmol, 2.0 eq), HATU (182 mg, 0.48 mmol, 1.2 eq) and acrylic acid (35 mg, 0.48 mmol, 1.2 eq) were added into dichloromethane (25 mL) and stirred at room temperature for 0.5 hour. The stirring was then stopped when the reaction was stopped and a saturated aqueous sodium carbonate solution was added and the mixture partitioned. The aqueous phase was extracted with dichloromethane twice. The organic phase was combined and washed with diluted aqueous hydrochloric acid and saturated brine in sequence, dried, concentrated in vacuo and purified by prep-TLC (eluent: dichloromethane/methanol 40/1 to 15/1) to give N-(5-((4-(5-(2-((tert-butyldiphenyl silyl)oxy)ethoxy)-1H-indol-1-yl)pyrimidin-2-yl)amino)-2-((2-(dimethylamino)ethyl)(methyl)amino)-4-methoxyphenyl)acrylamide as a yellow solid (200 mg, yield: 62%). MS (ESI): m/z 784 (M+H)+.
- The compound obtained above (200 mg, 0.25 mmol, 1.0 eq) was dissolved in tetrahydrofuran (20 mL) and TBAF (300 mg, 1.15 mmol, 4.6 eq) was added and stirred at room temperature for 1 hour, which was then concentrated in vacuo, extracted with dichloromethane which was then washed with water six times, dried over anhydrous sodium sulfate, concentrated in vacuo and purified by silica gel column chromatography (eluent: dichloromethane/methanol: 40/115/1) to give N-(2-((2-(dimethylamino)ethyl)(methyl)amino)-5-((4-(5-(2-hydroxyethoxy)-1H-indol-1-yl)pyrimidin-2-yl)amino)-4-methoxyphenyl)acrylamide as a yellow solid (30 mg, yield: 22%).
- The characterization data of Compound 37 were: LCMS (ESI): m/z 546 [M+H]+. m.p.: 65-67° C.; 1H NMR (500 MHz, DMSO-d6) δ 10.06 (s, 1H), 8.55 (d, J=14.9 Hz, 2H), 8.32 (dd, J=28.8, 7.0 Hz, 2H), 8.09 (d, J=3.1 Hz, 1H), 7.07 (dd, J=13.9, 8.1 Hz, 3H), 6.68 (t, J=7.7 Hz, 2H), 6.40 (dd, J=16.9, 10.2 Hz, 1H), 6.20 (d, J=16.8 Hz, 1H), 5.72 (d, J=10.1 Hz, 1H), 4.80 (s, 1H), 3.98 (t, J=4.8 Hz, 2H), 3.77 (s, 3H), 3.72 (d, J=3.6 Hz, 2H), 2.92 (s, 2H), 2.75 (s, 3H), 2.35 (s, 2H), 2.21 (s, 6H).
- The synthetic method was similar to that described in EXAMPLE 6, except that N4-(4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-yl)-N1-(2-(dimethylamino)ethyl)-5-methoxy-N1-methylbenzene-1,2,4-triamine (403-A-5) therein was replaced by N1-(2-(dimethylamino)ethyl)-5-methoxy-N4-(4-(5-(2-methoxyethoxy)-1H-indol-1-yl)pyrimidin-2-yl)-N1-methylbenzene-1,2,4-triamine (403-A-38) (140 mg, 0.28 mmol, 1.0 eq). N-(2-((2-(Dimethylamino)ethyl)(methyl)amino)-4-methoxy-5-((4-(5-(2-methoxyethoxy)-1H-indol-1-yl)pyrimidin-2-yl)amino)phenyl)acryl amide was obtained as a yellow solid (30 mg, yield: 19%).
- The characterization data of Compound 38 were: LCMS (ESI): m/z 560 [M+H]+. m.p.: 59-61° C.; 1H NMR (500 MHz, DMSO-d6) δ 10.03 (s, 1H), 8.56 (s, 2H), 8.35 (s, 2H), 8.10 (s, 1H), 7.09 (s, 3H), 6.69 (s, 2H), 6.43 (s, 1H), 6.21 (s, 1H), 5.73 (s, 1H), 4.09 (s, 3H), 3.73 (d, J=54.8 Hz, 7H), 2.95 (s, 2H), 2.75 (s, 3H), 2.39 (m, 2H), 2.25 (s, 6H).
- The synthetic method was similar to that described in EXAMPLE 6, except that N4-(4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-yl)-N1-(2-(dimethylamino)ethyl)-5-methoxy-N1-methylbenzene-1,2,4-triamine (403-A-5) therein was replaced by (1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-1H-indol-5-yl)methanol (403-A-38) (120 mg, 0.26 mmol, 1.0 eq). N-(2-((2-(Dimethylamino)ethyl)(methyl)amino)-5-((4-(5-(hydroxymethyl)-1H-indol-1-yl)pyrimidin-2-yl)amino)-4-methoxyphenyl)acryl amide was obtained as a yellow solid (25 mg, yield: 19%).
- The characterization data of Compound 39 were: LCMS (ESI): m/z 516 [M+H]+. m.p.: 67-68° C.; 1H NMR (500 MHz, DMSO-d6) δ 10.08 (s, 1H), 8.57 (s, 2H), 8.35 (d, J=26.2 Hz, 2H), 8.11 (s, 1H), 7.51 (s, 1H), 7.08 (d, J=26.0 Hz, 3H), 6.74 (s, 1H), 6.39 (s, 1H), 6.19 (d, J=16.3 Hz, 1H), 5.73 (s, 1H), 5.07 (s, 1H), 4.53 (s, 2H), 3.78 (s, 3H), 2.92 (s, 2H), 2.76 (s, 3H), 2.35 (s, 2H), 2.22 (s, 6H).
- The synthetic method was similar to that described in EXAMPLE 6, except that N4-(4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-yl)-N1-(2-(dimethylamino)ethyl)-5-methoxy-N1-methylbenzene-1,2,4-triamine (403-A-5) therein was replaced by 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-1H-indole-5-carboxamide (100 mg, 0.21 mmol, eq). 1-(2-((5-Acrylamido-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-1H-indole-5-carboxamide was obtained as a beige solid (60 mg, yield: 54.3%).
- The characterization data of Compound 41 were: LCMS (ESI): m/z 529 [M+H]+. m.p.: 121.3-125.1° C.; 1H NMR (500 MHz, DMSO-d6) δ 10.05 (s, 1H), 8.68 (s, 1H), 8.52 (s, 1H), 8.42 (d, J=5.6 Hz, 2H), 8.21 (d, J=3.6 Hz, 1H), 8.13 (s, 1H), 7.88 (s, 1H), 7.65 (d, J=8.8 Hz, 1H), 7.16 (t, J=8.9 Hz, 2H), 7.06 (s, 1H), 6.84 (d, J=3.5 Hz, 1H), 6.40 (dd, J=16.8, 10.2 Hz, 1H), 6.19 (d, J=17.0 Hz, 1H), 5.71 (d, J=10.5 Hz, 1H), 3.78 (s, 3H), 2.93 (s, 2H), 2.77 (s, 3H), 2.36 (s, 2H), 2.21 (s, 6H).
- The synthetic method was similar to that described in EXAMPLE 6, except that N4-(4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-yl)-N1-(2-(dimethylamino)ethyl)-5-methoxy-N1-methylbenzene-1,2,4-triamine (403-A-5) therein was replaced by N4-(4-(3-chloro-1H-indol-1-yl)pyrimidin-2-yl)-N1-(2-(dimethylamino)ethyl)-5-methoxy-N1-methylbenzene-1,2,4-triamine (403-A-46) (216 mg, 0.46 mmol, 1 eq). N-(5-((4-(3-Chloro-1H-indol-1-yl)pyrimidin-2-yl)amino)-2-((2-(dimethylamino)ethyl)(methyl)amino)-4-methoxyphenyl)acrylamide was obtained as a pale yellow solid (50 mg, yield: 29%).
- The characterization data of Compound 46 were: LCMS (ESI): m/z 520 [M+H]+. m.p.: 142-144° C.; 1H NMR (500 MHz, DMSO-d6) δ 10.05 (s, 1H), 8.67 (s, 1H), 8.56 (s, 1H), 8.43 (s, 3H), 7.55 (d, J=7.2 Hz, 1H), 7.28 (s, 1H), 7.21 (s, 1H), 7.15 (d, J=5.1 Hz, 1H), 7.06 (s, 1H), 6.41 (s, 1H), 6.22 (d, J=16.5 Hz, 1H), 5.73 (d, J=9.5 Hz, 1H), 3.78 (s, 3H), 2.94 (s, 2H), 2.72 (d, J=29.5 Hz, 3H), 2.37 (s, 2H), 2.24 (s, 6H).
- 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-5-chloro-3-methyl-1H-benzo[d]imidazol-2(3H)-one (506-A-51) (140 mg, 0.28 mmol, 1.0 eq), triethylamine (57 mg, 0.56 mmol, 2.0 eq) and 2-(-azobenzotriazole)-N,N,N′,N′-tetramethyluronium hexafluorophosphate (117 mg, 0.308 mmol, 1.1 eq) were dissolved in dichloromethane (25 mL) and acrylic acid (22 mg, 0.308 mmol, 1.1 eq) was then added and reacted at room temperature. After reaction for half an hour, water (30 mL) was added and extracted. The organic phase was washed with aqueous sodium carbonate solution, dried over anhydrous sodium sulfate, and rotary evaporated. The residue was purified by silica gel column chromatography (dichloromethane/methanol: 500:1˜150:1) to give N-(5-(4-(5-chloro-3-methyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)pyrimidin-2-ylamino)-2-((2-(dimethylamino)ethyl)(methyl)amino)-4-methoxyphenyl)acrylamide as a beige solid (23 mg, yield: 14.8%).
- The characterization data of Compound 51 were: LCMS (ESI): m/z 551 [M+H]+. m.p.: 70-71° C.; 1H NMR (500 MHz, DMSO-d6) δ 10.02 (s, 1H), 8.72 (s, 1H), 8.42 (m, 2H), 8.08 (s, 1H), 7.65 (d, J=5.6 Hz, 1H), 7.36 (s, 1H), 7.05 (s, 1H), 6.87 (d, J=8.5 Hz, 1H), 6.40 (dd, J=17.0, 10.2 Hz, 1H), 6.17 (d, J=16.9 Hz, 1H), 5.72 (d, J=10.1 Hz, 1H), 3.75 (s, 3H), 3.35 (s, 3H), 2.92 (s, 2H), 2.74 (s, 3H), 2.34 (s, 2H), 2.21 (s, 6H).
- The synthetic method was similar to that described in EXAMPLE 24, except that 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-5-chloro-3-methyl-1H-benzo[d]imidazol-2(3H)-one (506-A-55) was replaced by 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-3-methyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazole-5-carbonitrile (506-A-52) (65.4 mg, 0.136 mmol, 1 eq). N-(5-((4-(5-Cyano-3-methyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)pyrimidin-2-yl)amino)-2-((2-(dimethylamino)ethyl)(methyl)amino)-4-methoxyphenyl)acrylamide was obtained as a yellow solid (40 mg, yield: 55.06%).
- The characterization data of Compound 52 were: LCMS (ESI): m/z 542 [M+H]+. m.p.: 183-185° C.; 1H NMR (500 MHz, DMSO-d6) δ 10.00 (s, 1H), 8.79 (s, 1H), 8.48 (d, J=5.3 Hz, 1H), 8.39 (s, 1H), 8.23 (s, 1H), 7.77 (s, 1H), 7.62 (d, J=5.2 Hz, 1H), 7.31 (d, J=7.3 Hz, 1H), 7.05 (s, 1H), 6.41 (dd, J=16.7, 10.2 Hz, 1H), 6.17 (d, J=17.0 Hz, 1H), 5.72 (d, J=10.1 Hz, 1H), 3.77 (s, 3H), 3.39 (s, 3H), 2.92 (s, 2H), 2.75 (s, 3H), 2.35 (s, 2H), 2.21 (s, 6H).
- The synthetic method was similar to that described in EXAMPLE 24, except that 1-(2-((5-amino-4-((2-dimethylaminoethyl)(methyl)amino)-2-methoxy-phenyl)amino)-5-fluoro-4-yl)-3-methyl-1H-benzo[d]imidazol-2(3H)-one (506-A-55) therein was replaced by 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-5-methoxy-3-methyl-1H-benzo[d]imidazol-2(3H)-one (506-A-53) (170 mg, 0.35 mmol, 1 eq). N-(2-((2-(Dimethylamino)ethyl) (methyl)amino)-4-methoxy-5-((4-(5-methoxy-3-methyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)pyrimidin-2-yl)amino)phenyl)acrylamide was obtained as a beige solid (80 mg, yield: 42%).
- The characterization data of Compound 53 were: LCMS (ESI): m/z 547 [M+H]+. m.p.: 75-87° C.; 1H NMR (500 MHz, DMSO-d6) δ 10.04 (s, 1H), 8.65 (s, 1H), 8.40 (m, 2H), 7.98 (d, J=7.7 Hz, 1H), 7.69 (d, J=5.7 Hz, 1H), 7.05 (s, 1H), 6.84 (d, J=2.3 Hz, 1H), 6.39 (dd, J=16.9, 10.1 Hz, 2H), 6.18 (dd, J=17.0, 1.6 Hz, 1H), 5.73 (m, 1H), 3.76 (t, J=8.5 Hz, 6H), 3.34 (s, 3H), 2.92 (t, J=5.5 Hz, 2H), 2.75 (s, 3H), 2.35 (d, J=5.2 Hz, 2H), 2.21 (s, 6H).
- The synthetic method was similar to that described in EXAMPLE 24, except that 1-(2-((5-amino-4-((2-dimethylamino ethyl)(methyl)amino)-2-methoxy-phenyl)amino)-5-fluoro-4-yl)-3-methyl-1H-benzo[d]imidazol-2(3H)-one (506-A-55) therein was replaced by 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl) amino)-5-methoxypyrimidin-4-yl)-3-methyl-1H-benzo[d]imidazol-2(3H)-one (506-A-57) (400 mg, 0.81 mmol, 1.0 eq). N-(2-((2-(Dimethylamino)ethyl) (methyl)amino)-4-methoxy-5-((5-methoxy-4-(3-methyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)pyrimidin-2-yl)amino)phenyl)acrylamide was obtained as a yellow solid (15 mg, yield: 45.08%).
- The characterization data of Compound 57 were: LCMS (ESI): m/z 547 [M+H]+; m.p.: 168-172° C.; 1H NMR (500 MHz, DMSO-d6) δ 9.99 (s, 1H), 8.63 (s, 1H), 8.58 (s, 1H), 8.20 (s, 1H), 7.21 (d, J=7.8 Hz, 1H), 7.13 (t, J=7.6 Hz, 1H), 7.08 (d, J=7.7 Hz, 1H), 7.01 (t, J=7.6 Hz, 1H), 6.96 (s, 1H), 6.37 (dd, J=16.9, 10.1 Hz, 1H), 6.22 (d, J=17.0 Hz, 1H), 5.73 (d, J=10.5 Hz, 1H), 3.81 (d, J=9.0 Hz, 6H), 3.37 (s, 3H), 2.83 (t, J=5.6 Hz, 2H), 2.68 (s, 3H), 2.27 (t, J=5.4 Hz, 2H), 2.18 (s, 6H).
- (E)-but-2-enoic acid (602-66) (24 mg, 0.277 mmol, 1.2 eq), triethylamine (58.3 mg, 0.58 mmol, 2.5 eq), and HATU (114 mg, 0.3 mmol, 1.3 eq) were dissolved in dichloromethane (10 mL) at room temperature. After stirring for half an hour, N4-(4-(1H-indol-1-yl)pyrimidin-2-yl)-N1-(2-(dimethylamino)ethyl)-5-methoxy-N1-methylbenzene-1,2,4-triamine (403-A-1) (100 mg, 0.232 mmol, 1 eq) in dichloromethane (2 mL) was added dropwise to the reaction and stirred for 1 hour. The reaction solution was extracted with water and ethyl acetate. The organic phase was washed with brine, dried over anhydrous sodium sulfate, concentrated in vacuo and purified by silica gel column chromatography (eluent: dichloromethane/methanol: 80/1) to give (E)-N-(5-((4-(1H-indol-1-yl)pyrimidin-2-yl)amino)-2-((2-(dimethylamino)ethyl)(methyl)amino)-4-methoxyphenyl)but-2-enamide (50 mg, 0.1 mmol, yield: 43.1%).
- The characterization data of of Compound 66 were: LCMS (ESI): m/z 500 [M+H]+. m.p.: 150.2-152.8° C.; 1H NMR (500 MHz, DMSO-d6) δ 9.86 (s, 1H), 8.57 (d, J=20.3 Hz, 2H), 8.38 (d, J=5.6 Hz, 2H), 8.13 (d, J=3.5 Hz, 1H), 7.58 (d, J=7.7 Hz, 1H), 7.10 (m, 4H), 6.74 (m, 2H), 6.07 (d, J=15.2 Hz, 1H), 3.76 (s, 3H), 2.90 (t, J=5.3 Hz, 2H), 2.74 (s, 3H), 2.35 (t, J=5.4 Hz, 2H), 2.22 (s, 6H), 1.87 (d, J=6.7 Hz, 3H).
- The synthetic method was similar to that described in EXAMPLE 28, except that (E)-but-2-enoic acid (602-66) therein was replaced by trans-2-pentenoic acid (602-67) (26 mg, 0.25 mmol, 1.2 eq). (E)-N-(5-((4-(1H-Indol-1-yl)pyrimidin-2-yl)amino)-2-((2-(dimethylamino)ethyl)(methyl)amino)-4-methoxyphenyl)pent-2-enamide was obtained as a slightly yellow solid (19 mg, yield: 18%).
- The characterization data of Compound 67 were: LCMS (ESI): m/z 514 [M+H]+. m.p.: 124.3-126.2° C.; 1H NMR (500 MHz, DMSO-d6) δ 9.89 (s, 1H), 8.65 (s, 1H), 8.50 (s, 1H), 8.38 (d, J=5.7 Hz, 2H), 8.13 (d, J=3.6 Hz, 1H), 7.58 (d, J=7.7 Hz, 1H), 7.10 (ddd, J=35.6, 16.6, 9.3 Hz, 4H), 6.80 (m, 2H), 6.08 (dd, J=17.2, 10.2 Hz, 1H), 3.77 (s, 3H), 2.94 (s, 2H), 2.74 (s, 3H), 2.24 (dd, J=22.1, 15.0 Hz, 8H), 1.23 (s, 2H), 1.05 (t, J=7.4 Hz, 3H).
- The synthetic method was similar to that described in EXAMPLE 28, except that (E)-but-2-enoic acid (602-66) therein was replaced by methacrylic acid (602-68) (24 mg, 0.28 mmol, 1.2 eq). N-(5-((4-(1H-Indol-1-yl)pyrimidin-2-yl)amino)-2-((2-(dimethylamino)ethyl)(methyl)amino)-4-methoxyphenyl)methacrylamide was obtained as a beige solid (70 mg, yield: 60%).
- The characterization data of Compound 68 were: LCMS (ESI): m/z 500 [M+H]+. m.p.: 145.7-147.1° C.; NMR (500 MHz, DMSO-d6) δ 9.81 (s, 1H), 8.59 (s, 1H), 8.53 (s, 1H), 8.40 (d, J=5.7 Hz, 2H), 8.14 (d, J=3.7 Hz, 1H), 7.59 (d, J=7.6 Hz, 1H), 7.12 (m, 4H), 6.77 (d, J=3.6 Hz, 1H), 5.79 (s, 1H), 5.50 (s, 1H), 3.79 (s, 3H), 3.01 (s, 2H), 2.71 (s, 3H), 2.17 (s, 8H), 1.97 (s, 3H).
- The synthetic method was similar to that described in Example 28, except that (E)-but-2-enoic acid (602-66) therein was replaced by trans-4-dimethylaminocrotonic acid hydrochloride (602-69)(37 mg, 0.22 mmol, 1.2 eq). (E)-N-(5-((4-(1H-Indol-1-yl)pyrimidin-2-yl)amino)-2-((2-(dimethylamino)ethyl)(methyl)amino)-4-methoxyphenyl)-4-(dimethylamino)but-2-enamide was obtained as a brown solid (40 mg, yield: 40%).
- The characterization data of Compound 69 were: LCMS (ESI): m/z 543[M+H]+. m.p.: 116.2-118.1° C.; 1H. NMR (500 MHz, DMSO-d6) δ 9.92 (s, 1H), 8.50 (m, 4H), 8.13 (s, 1H), 7.59 (s, 1H), 7.08 (d, J=44.8 Hz, 4H), 6.72 (d, J=41.2 Hz, 2H), 6.30 (s, 1H), 3.79 (s, 3H), 3.29 (s, 2H), 3.12 (s, 2H), 2.99 (s, 2H), 2.73 (s, 3H), 2.35 (s, 6H), 2.22 (s, 6H).
- N4-(4-(1H-indol-1-yl)pyrimidin-2-yl)-N1-(2-(dimethylamino)ethyl)-5-methoxy-N1-methylbenzene-1,2,4-triamine (403-1) (145 mg, 0.336 mmol, 1.0 eq) was dissolved in MeCN (30 mL). N, N-diisopropylethylamine (87 mg, 0.672 mmol, 2.0 eq), HATU (128 mg, 0.336 mmol, 1.0 eq) and (E)-4-(piperidin-1-yl)but-2-enoic acid (602-70)(100 mg, crude) were then added in sequence, and the mixture was stirred at room temperature for two hours. After the reaction was completed, saturated aqueous sodium carbonate solution was added to quench the reaction and extracted with dichloromethane (3×80 mL). The organic phase was combined, dried over anhydrous sodium sulfate, concentrated and purified by silica gel column chromatography (eluent:dichloromethane/methanol: 60:1 to 15:1) to give (E)-N-(5-(4-(1H-indol-1-yl)pyrimidin-2-ylamino)-2-((2-(dimethylamino)ethyl)(methyl)amino)-4-methoxyphenyl)-4-(piperidin-1-yl)but-2-enamide as a gray solid (60 mg, yield: 30.6%).
- The characterization data of Compound 70 were: MS (ESI): m/z 583[M+H]+. 1H NMR (500 MHz, DMSO-d6) δ 9.92 (s, 1H), 8.57 (s, 1H), 8.42 (m, 3H), 8.13 (d, J=3.6 Hz, 1H), 7.58 (d, J=7.4 Hz, 1H), 7.13 (m, 3H), 7.03 (s, 1H), 6.77 (d, J=3.5 Hz, 1H), 6.69 (m, 1H), 6.36 (s, 1H), 3.79 (s, 3H), 3.16 (s, 2H), 3.04 (s, 2H), 2.71 (s, 3H), 2.42 (s, 12H), 1.54 (s, 4H), 1.40 (s, 2H).
- The synthetic method was similar to that described in Example 28, except that (E)-but-2-enoic acid (602-66) therein was replaced by 2-butynoic acid (604-73) (21 mg, 0.25 mmol, 1.2 eq), N-(5-((4-(1H-Indol-1-yl)pyrimidin-2-yl)amino)-2-((2-(dimethylamino)ethyl)(methyl)amino)-4-methoxyphenyl)but-2-ynamide was obtained as a slightly yellow solid (48 mg, yield: 46%).
- The characterization data of Compound 73 were: LCMS (ESI): m/z 498[M+H]+. m.p.: 189.7-191.8° C.; 1H NMR (500 MHz, DMSO-do) δ 10.95 (s, 1H), 8.60 (s, 1H), 8.39 (m, 3H), 8.11 (d, J=3.6 Hz, 1H), 7.59 (d, J=7.6 Hz, 1H), 7.13 (m, 4H), 6.77 (d, J=3.5 Hz, 1H), 3.77 (s, 3H), 2.90 (s, 2H), 2.75 (s, 3H), 2.31 (d, J=24.4 Hz, 8H), 2.03 (s, 3H).
- The synthetic method was similar to that described in Example 28, except that (E)-but-2-enoic acid (602-66) therein was replaced by 2-pentynoic acid (25 mg, 0.25 mmol, 1.2 eq). N-(5-((4-(1H-Indol-1-yl)pyrimidin-2-yl)amino)-2-((2-(dimethylamino)ethyl)(methyl) amino)-4-methoxyphenyl)pent-2-ynamide was obtained as a slightly yellow solid (27 mg, yield: 25%).
- The characterization data of Compound 74 were: LCMS (ESI): m/z 512[M+H]+. m.p.: 149.4-151.7° C.; 1H NMR (500 MHz, DMSO-d6) δ 10.92 (s, 1H), 8.60 (s, 1H), 8.39 (d, J=5.6 Hz, 3H), 8.11 (d, J=3.6 Hz, 1H), 7.59 (d, J=7.6 Hz, 1H), 7.13 (m, 4H), 6.77 (d, J=3.5 Hz, 1H), 3.78 (s, 3H), 2.96 (s, 2H), 2.74 (s, 3H), 2.41 (dt, J=27.1, 13.5 Hz, 8H), 1.24 (s, 2H), 1.16 (t, J=7.5 Hz, 3H).
- The synthetic method was similar to that described in Example 6, except that N4-(4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-yl)-N1-(2-(dimethylamino)ethyl)-5-methoxy-N1-methylbenzene-1,2,4-triamine (403-A-5) therein was replaced by N1-(4-(1H-indol-1-yl)pyrimidin-2-yl)-4-(3-(dimethylamino)azetidin-1-yl)-6-methoxybenzene-1,3-diamine (403-C-77) (179 mg, 0.416 mmol, 1.0 eq), N-(5-(4-(1H-Indol-1-yl)pyrimidin-2-ylamino)-2-(3-(dimethylamino)azetidin-1-yl)-4-methoxyphenyl)acrylamide was obtained as a beige solid (45 mg, yield: 22%).
- The characterization data of Compound 77 were: LCMS (ESI): m/z 484[M+H]+. m.p.: 81-83° C.; 1H NMR (500 MHz, DMSO-d6) δ 9.26 (s, 1H), 8.41 (s, 2H), 8.34 (d, J=5.6 Hz, 1H), 8.07 (d, J=3.6 Hz, 1H), 7.58 (d, J=7.5 Hz, 1H), 7.46 (s, 1H), 7.17 (dt, J=19.2, 7.2 Hz, 2H), 7.06 (d, J=5.7 Hz, 1H), 6.76 (d, J=3.5 Hz, 1H), 6.47 (dd, J=17.1, 10.2 Hz, 1H), 6.20 (m, 2H), 5.66 (d, J=11.8 Hz, 1H), 3.97 (t, J=7.0 Hz, 2H), 3.78 (s, 3H), 3.59 (t, J=6.6 Hz, 2H), 3.08 (m, 1H), 2.09 (s, 6H).
- The synthetic method was similar to that described in Example 6, except that N4-(4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-yl)-N1-(2-(dimethylamino)ethyl)-5-methoxy-N1-methylbenzene-1,2,4-triamine (403-A-5) therein was replaced by (S)—N1-(4-(1H-indol-1-yl)pyrimidin-2-yl)-4-(3-(dimethylamino)pyrrolidin-1-yl)-6-methoxybenzene-1,3-diamine (403-C-78) (130 mg, 0.293 mmol, 1.0 eq), (S)—N-(5-((4-(1H-Indol-1-yl)pyrimidin-2-yl)amino)-2-(3-(dimethylamino)pyrrolidin-1-yl)-4-methoxyphenyl)acrylamide was obtained as a yellow solid (100 mg, yield: 68.49%).
- The characterization data of Compound 78 were: LCMS (ESI): m/z 498 [M+H]+; m.p.: 161-162° C.; 1H NMR (500 MHz, DMSO-d6) δ 9.32 (s, 1H), 8.43 (s, 2H), 8.35 (d, J=5.6 Hz, 1H), 8.08 (d, J=3.5 Hz, 1H), 7.58 (d, J=8.5 Hz, 2H), 7.16 (d, J=3.6 Hz, 2H), 7.07 (d, J=5.7 Hz, 1H), 6.76 (d, J=3.4 Hz, 1H), 6.51 (m, 2H), 6.17 (d, J=17.0 Hz, 1H), 5.66 (d, J=10.3 Hz, 1H), 3.79 (s, 3H), 3.39 (dd, J=15.9, 9.0 Hz, 1H), 3.22 (dd, J=16.5, 7.4 Hz, 3H), 2.71 (s, 1H), 2.18 (s, 6H), 2.09 (s, 1H), 1.74 (dd, J=20.0, 10.1 Hz, 1H).
- The synthetic method was similar to that described in Example 6, except that N4-(4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-yl)-N1-(2-(dimethylamino)ethyl)-5-methoxy-N1-methylbenzene-1,2,4-triamine (403-A-5) therein was replaced by (R)—N1-(4-(1H-indol-1-yl)pyrimidin-2-yl)-4-(3-(dimethylamino)pyrrolidin-1-yl)-6-methoxybenzene-1,3-diamine (403-C-79) (135 mg, 0.305 mmol, 1.0 eq). (R)—N-(5-((4-(1H-Indol-1-yl)pyrimidin-2-yl)amino)-2-(3-(dimethylamino)pyrrolidin-1-yl)-4-methoxyphenyl)acrylamide was obtained as a yellow solid (69 mg, yield: 56.67%).
- The characterization data of Compound 79 were: LCMS (ESI): m/z 498 [M+H]+; m.p.: 161-162° C.; 1H NMR (500 MHz, DMSO-d6) δ 9.32 (s, 1H), 8.43 (s, 2H), 8.35 (d, J=5.6 Hz, 1H), 8.08 (d, J=3.6 Hz, 1H), 7.58 (d, J=9.0 Hz, 2H), 7.16 (m, 2H), 7.07 (d, J=5.7 Hz, 1H), 6.76 (d, J=3.5 Hz, 1H), 6.51 (m, 2H), 6.17 (d, J=17.1 Hz, 1H), 5.67 (d, J=10.3 Hz, 1H), 3.79 (s, 3H), 3.39 (dd, J=15.9, 9.2 Hz, 1H), 3.22 (dd, J=16.3, 7.3 Hz, 3H), 2.71 (m, 1H), 2.18 (s, 6H), 2.09 (s, 1H), 1.74 (dd, J=20.4, 9.6 Hz, 1H).
- The synthetic method was similar to that described in Example 6, except that N4-(4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-yl)-N1-(2-(dimethylamino)ethyl)-5-methoxy-N1-methylbenzene-1,2,4-triamine (403-A-5) therein was replaced by N4-(4-(1H-indol-1-yl)pyrimidin-2-yl)-5-methoxy-N1-methyl-N1-(2-(pyrrolidin-1-yl)ethyl)benzene-1,2,4-triamine (403-B-80) (169 mg, 0.369 mmol, 1.0 eq), N-(5-(4-(1H-Indol-1-yl)pyrimidin-2-ylamino)-4-methoxy-2-(methyl(2-(pyrrolidin-1-yl)ethyl)amino)phenyl)acrylamide was obtained as a yellow solid (25 mg, yield: 13.3%).
- The characterization data of Compound 80 were: LCMS (ESI): m/z 512 [M+H]+. m.p.: 151-153° C.; 1H NMR (500 MHz, DMSO-d6) δ 9.75 (s, 1H), 8.59 (s, 1H), 8.48 (s, 1H), 8.39 (d, J=5.6 Hz, 2H), 8.13 (d, J=3.7 Hz, 1H), 7.58 (d, J=7.6 Hz, 1H), 7.11 (ddd, J=30.8, 17.7, 11.4 Hz, 4H), 6.76 (d, J=3.6 Hz, 1H), 6.45 (m, 1H), 6.19 (d, J=16.9 Hz, 1H), 5.73 (m, 1H), 3.78 (s, 3H), 3.00 (s, 2H), 2.74 (s, 3H), 2.50 (d, J=1.7 Hz, 6H), 1.73 (s, 4H).
- The synthetic method was similar to that described in Example 6, except that N4-(4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-yl)-N1-(2-(dimethylamino)ethyl)-5-methoxy-N1-methylbenzene-1,2,4-triamine (403-A-5) therein was replaced by N4-(4-(1H-indol-1-yl)pyrimidin-2-yl)-5-methoxy-N1-methyl-N1-(2-morpholin-4-yl-ethyl)benzene-1,2,4-triamine (403-B-82) (0.12 g, 0.25 mmol). N-{5-(4-Indol-1-yl-pyrimidin-2-ylamino)-4-methoxy-2-[methyl-(2-morpholin-4-yl-ethyl)-amino]-phenyl}-acrylamide was obtained as a yellow solid (25 mg, yield: 13.3%).
- The characterization data of Compound 82 were: LCMS (ESI): m/z 528[M+H]+; 1H NMR (500 MHz, DMSO-d6) δ 9.29 (s, 1H), 8.58 (s, 1H), 8.39 (m, 3H), 8.12 (d, J=3.7 Hz, 1H), 7.58 (d, J=7.2 Hz, 1H), 7.12 (m, 3H), 7.01 (s, 1H), 6.76 (d, J=3.6 Hz, 1H), 6.61 (dd, J=16.9, 10.2 Hz, 1H), 6.19 (dd, J=17.0, 1.7 Hz, 1H), 5.73 (d, J=10.6 Hz, 1H), 3.79 (s, 3H), 3.55 (m, 4H), 3.03 (t, J=6.6 Hz, 2H), 2.74 (s, 3H), 2.41 (t, J=6.6 Hz, 2H), 2.34 (s, 4H).
- The synthetic method was similar to that described in Example 6, except that N4-(4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-yl)-N1-(2-(dimethylamino)ethyl)-5-methoxy-N1-methylbenzene-1,2,4-triamine (403-A-5) therein was replaced by N1-(4-(1H-indol-1-yl)pyrimidin-2-yl)-6-methoxy-4-(4-methylpiperazin-1-yl)benzene-1,3-diamine (403-C-84) (180 mg, 0.41 mmol, 1.0 eq). N-(5-((4-(1H-Indol-1-yl)pyrimidin-2-yl)amino)-4-methoxy-2-(4-methylpiperazin-1-yl) phenyl)acrylamide was obtained as a light yellow solid (40 mg, yield: 20%).
- The characterization data of Compound 84 were: LCMS (ESI): m/z 484[M+H]+; m.p.: 204-205° C.; 1H NMR (500 MHz, DMSO-d6) δ 9.03 (s, 1H), 8.63 (s, 1H), 8.39 (t, J=8.8 Hz, 2H), 8.21 (s, 1H), 8.12 (d, J=3.5 Hz, 1H), 7.58 (d, J=7.3 Hz, 1H), 7.14 (m, 3H), 6.90 (s, 1H), 6.77 (d, J=3.4 Hz, 1H), 6.62 (dd, J=16.9, 10.2 Hz, 1H), 6.18 (d, J=17.1 Hz, 1H), 5.71 (d, J=10.3 Hz, 1H), 3.78 (s, 3H), 2.91 (s, 4H), 2.58 (s, 4H), 2.28 (s, 3H).
- The synthetic method was similar to that described in Example 6, except that N4-(4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-yl)-N1-(2-(dimethylamino)ethyl)-5-methoxy-N1-methylbenzene-1,2,4-triamine (403-A-5) therein was replaced by N1-(2-(dimethylamino)ethyl)-5-methoxy-N4-(4-(5-methoxy-1H-pyrrolo[3,2-b]pyri din-1-yl)pyrimidin-2-yl)-N1-methylbenzene-1,2,4-triamine (403-A-20) (132 mg, 0.286 mmol, 1.0 eq). N-(2-((2-(Dimethylamino)ethyl)(methyl)amino)-4-methoxy-5-((4-(5-methoxy-1H-pyrrolo[3,2-b]pyridin-1-yl)pyrimidin-2-yl)amino)phenyl)acrylamide was obtained as a white solid (90 mg, yield: 61.05%).
- The characterization data of
Compound 20 were: LCMS (ESI): m/z 517 [M+H]+. m.p.: 177-178° C.; 1H NMR (500 MHz, DMSO-d6) δ 10.05 (s, 1H), 8.71 (s, 1H), 8.61 (s, 1H), 8.49 (s, 1H), 8.40 (d, J=5.0 Hz, 1H), 8.32 (s, 1H), 7.14 (d, J=5.1 Hz, 1H), 7.05 (s, 1H), 6.74 (s, 1H), 6.43 (m, 2H), 6.18 (d, J=16.8 Hz, 1H), 5.72 (d, J=9.8 Hz, 1H), 3.87 (s, 3H), 3.76 (s, 3H), 2.91 (s, 2H), 2.75 (s, 3H), 2.34 (s, 2H), 2.21 (s, 6H). - Step 42a: Preparation of 5-fluoro-N1-methylbenzene-1,2-diamine (Intermediate 501-50): Under an ice bath condition, 2,4-difluoronitrobenzene (10 g, 62.9 mmol, 1.0 eq) was dissolved in tetrahydrofuran (150 mL) and was then added 40% aqueous solution of methylamine (9.8 g, 125 mmol, 2.0 eq) was added dropwise quickly. The mixture was reacted at room temperature for 4 hours and the LCMS check indicated reaction completion. Petroleum ether (50 mL) and ethyl acetate (50 mL) were added to the reaction, washed with water, 2 mol/L hydrochloric acid, aqueous sodium bicarbonate solution and saturated brine, dried over sodium sulfate and rotary evaporated to give 5-fluoro-N-methyl-2-nitroaniline as a yellow solid (10.7 g, yield: 100%). The characterization data of compound were: LCMS (ESI): m/z 171 [M+H]+. The compound obtained above (10.5 g, 61.8 mmol, 1.0 eq), iron powder (17.3 g, 309 mmol, 5.0 eq), ammonium chloride (16.5 g, 309 mmol, 5.0 eq) and water (50 mL) were dissolved in ethanol (200 mL) and placed in an 85° C. oil bath and reacted for 3 hours. The LCMS check indicated reaction completion and the reaction was cooled to room temperature and poured into water (200 mL) and then dichloromethane (200 mL) was added, stirred for 5 min, filtered through celite and the filtrate was partitioned. The organic phase was dried over anhydrous sodium sulfate and the solvent was rotary evaporated to give 5-fluoro N1-methylbenzene-1,2-diamineas a red liquid product (8.5 g, yield: 98.2%). The characterization data o
- Step 42b: Preparation of 6-fluoro-1-methyl-1H-benzo[d]imidazol-2(3H)-one (Intermediate 502-50): 5-Fluoro-N1-methylbenzene-1,2-diamine (501-50) (4.2 g, 30.0 mmol, 1.0 eq) was dissolved in dichloromethane (100 mL) and then triethylamine (6.1 g, 60.0 mmol, 2.0 eq) was added. Under nitrogen protection, the reaction was cooled to about 0° C. with an ice bath and then triphosgene (3.1 g, 10.5 mmol, 0.35 eq) in dichloromethane (50 mL) was added dropwise to the above reaction mixture while controlling the temperature below 5° C. After addition, the mixture was reacted for about half an hour while controlling the temperature around 0° C. in an ice bath. The LCMS check indicated reaction completion and methanol (30 mL) was added and stirred for 10 min and then poured into water (100 mL) and partitioned. The water phase was extracted with dichloromethane/methanol=3/1(100 mL). The organic phase was combined, dired over anhydrous sodium sulfate and rotary evaporated. Dichloromethane (100 mL) was added to the residue to form crystals which was filtered and the filter cake was washed with dichloromethane and dried under vacuum to give 6-fluoro-1-methyl-1H-benzo [d]imidazol-2(3H)-one as a pink solid (4.2 g, yield: 84.0%). The characterization data of this compound were: LCMS (ESI): m/z 167 [M+H]+.
- Step. 42c: Preparation of 1-(2-chloropyrimidin-4-yl)-5-fluoro-3-methyl-1H-benzo[d]imidazol-2(3H)-one (Intermediate 503-50): 6-Fluoro-1-methyl-1H-benzo[d]imidazol-2(3H)-one (7.0 g, 42.2 mmol, 1.0 eq) and 2,4-dichloropyrimidine (9.4 g, 63.3 mmol, 1.5 eq) were dissolved in DMF (200 mL) and to it was added Cesium carbonate (20.7 g, 63.3 mmol, 1.5 eq). The mixture was reacted for 4 hours while controlling the temperature below 20° C. with an ice bath and then poured into water (600 mL), stirred for 30 minutes (cooled to the room temperature) and filtered. The residue was washed with water, petroleum ether (200 mL) and methanol (200 mL). The solid was collected and slurried in petroleum ether/ethyl acetate=2/1 (150 ml) with heat. After cooling to room temperature, the crystals were completely precipitated out and filtered. The filter cake was washed with petroleum ether/ethyl acetate=2/1 and dried to give 1-(2-chloropyrimidin-4-yl)-5-fluoro-3-methyl-1H-benzo[d]imidazol-2(3H)-one as a white soli (10.1 g, yield: 86.3%). The characterization data of this compound were: LCMS (ESI): m/z 279 [M+H]+.
- Step 42d: Preparation of 1-(2-((4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxy-5-nitrophenyl)amino)pyrimidin-4-yl)-5-fluoro-3-methyl-1H-benzo[d]imidazol-2(3H)-one (Intermediate 505-A-50): 1-(2-Chloropyrimidin-4-yl)-5-fluoro-3-methyl-1H-benzo[d]imidazol-2(3H)-one (503-50) (10 g, 35.9 mmol, 1.0 eq) and 4-fluoro-2-methoxy-5-nitroaniline (103) (7.3 g, 39.5 mmol, 1.1 eq) were dissolved in isopropanol (400 mL) and to it was added concentrated hydrochloric acid (8 mL) dropwise. The mixture was heated to 85° C. and reacted for 48 hours. The LCMS check indicated reaction completion and the reaction was cooled to room temperature and water (100 mL) was added. The pH was adjusted to >8 by the addition of a sodium hydroxide aqueous solution (2 mol/L) and stirred for 10 minutes and filtered. The filter cake was washed with methanol and ethyl acetate, dried in vacuum to give the product 1-(2-(4-fluoro-2-methoxy-5-nitroanilino)pyrimidin-4-yl)-1H-benzo[d]imidazol-2(3H)-one as a light yellow solid (12.0 g, yield: 77.9%). The characterization data of this compound were: LCMS (ESI): m/z 429 [M+H]+. The compound obtained above (6.5 g, 15.2 mmol, 1.0 eq), N,N,N-trimethylethylenediamine (3.1 g, 30.4 mmol, 2.0 eq) and N,N-diisopropylethylamine (5.9 g, 45.6 mmol, 3.0 eq) were dissolved in tetrahydrofuran (100 mL), and then N-methylpyrrolidone (20 mL) was added. The reaction system was heated to reflux and stirred to react for 18 hours and then cooled to room temperature and added ethyl acetate (100 mL), which was then washed with water and saturated brine, dried over anhydrous magnesium sulfate. The solvent was rotary evaporated to give a crude product as a yellow solid. The crude product was slurried in methanol and filtered. The filter cake was washed with methanol to give 1-(2-((4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxy-5-nitrophenyl)amino)pyrimidin-4-yl)-5-fluoro-3-methyl-1H-benzo[d]imidazol-2(3H)-one as a yellow solid (7.0 g, yield: 90.9%). The characterization data of this compound were: LCMS (ESI): m/z 511 [M+H]+.
- Step. 42e: Preparation of 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-5-fluoro-3-methyl-1H-benzo[d]imidazol-2(3H)-one (Intermediate 506-A-50): 1-(2-((4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxy-5-nitrophenyl)amino)pyrimidin-4-yl)-5-fluoro-3-methyl-1H-benzo[d]imidazol-2(3H)-one (505-A-50) (7.0 g, 13.7 mmol, 1.0 eq), iron powder (3.8 g, 68.5 mmol, 5.0 eq), ammonium chloride (3.7 g, 68.5 mmol, 5.0 eq) and water (20 mL) were dissolved in ethanol (100 mL) and heated to 85° C. to react for 3 hours. The LCMS check indicated reaction completion and 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-5-fluoro-3-methyl-1H-benzo[d]imidazol-2(3H)-one was obtained. The characterization data of this compound were: LCMS (ESI): m/z 481 [M+H]+.
- Step. 42f: Preparation of N-(2-((2-(dimethylamino)ethyl)(methyl) amino)-5-((4-(5-fluoro-3-methyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)pyrimidin-2-yl)amino)-4-methoxyphenyl)acrylamide (Compound 50): Method 1: The reaction solution of 1-(2-(5-amino-4-((2-dimethylamino ethyl)(methyl)amino)-2-methoxyanilino)pyrimidin-4-yl) 5-fluoro-3-methyl-1H-benzo[d]imidazol-2(3H)-one (506-A-50) obtained above was cooled to about 0° C. with an ice salt bath, and then 3-chloropropionyl chloride (3.5 g, 27.4 mmol, 2.0 eq) in tetrahydrofuran (20 mL) was added dropwise. After addition, the reaction was stirred for 30 minutes while controlling the temperature around 0° C. The LCMS check indicated reaction was not completed and N—N-diisopropylethylamine (5.3 g, 41.1 mmol, 3.0 eq) was added. After stirring for 10 minutes, additional 3-chloropropionyl chloride (3.5 g, 27.4 mmol, 2.0 eq) in tetrahydrofuran (20 mL) was added. After addition, the reaction was stirred for about 30 minutes while controlling the temperature around 0° C. The LCMS check indicated reaction completion and water (200 mL) and dichloromethane (200 mL) was then added, stirred for 10 minutes and then filtered on celite in bush funnel. The filtrate was partitioned and the water phase was extracted with dichloromethane (100 mL). The organic phases were combined and rotary evaporated to give an off white residue which was slurried in ethyl acetate (100 mL), filtered and washed with ethyl acetate to give a white intermediate. The intermediate was dissolved in acetonitrile (100 mL), and then triethylamine (10 mL) was added and the reaction was refluxed for 18 hours. The LCMS check indicated reaction completion. The reaction was cooled to room temperature and water (100 mL) was added, and stirred for 1 hour to allow the solid to precipitate out completely and filtered. The filter cake was washed with water and petroleum ether. The filter cake was dissolved in dichloromethane (50 mL), dried over anhydrous sodium sulfate, filtered and the solvent was rotary evaporated to give the product N-(2-((2-(dimethylamino)ethyl)(methyl) amino)-5-((4-(5-fluoro-3-methyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)pyrimidin-2-yl)amino)-4-methoxyphenyl)acrylamide as a white solid (4.7 g, yield: 75.1%). Method 2: 1-(2-(5-Amino-4-(2-dimethylaminoethyl)(methyl)amino)-2-methoxyanilino)5-fluoro-3-methyl-1H-benzo[d]imidazol-2(3H)-one (506-A-50) (100 mg, 0.21 mmol, 1 eq), 2-(7-azobenzotriazole)-N, N, N′, N′-tetramethyluronium hexafluorophosphate (103 mg, 0.27 mmol, 1.3 eq) and triethylamine (64 mg, 0.63 mmol, 3 eq) were dissolved in dichloromethane (20 mL). To the mixture was added acrylic acid (18 mg, 0.252 mmol, 1.2 eq.) in dichloromethane (10 mL) dropwise slowly. After stirring for 2 hours, the reaction mixture was concentrated and purified by silica gel column chromatography (eluent: dichloromethane/methanol=100:1) to give N-(2-((2-(dimethylamino)ethyl)(methyl) amino)-5-((4-(5-fluoro-3-methyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)pyrimidin-2-yl)amino)-4-methoxyphenyl)acrylamide as a white solid (80 mg, yield: 71.4%).
- The characterization data of Compound 50 were: LCMS (ESI): m/z 535 [M+H]+. m.p.: 208-210° C.; 1H NMR (500 MHz, DMSO-d6) δ 10.01 (s, 1H), 8.72 (s, 1H), 8.42 (m, 2H), 8.11 (s, 1H), 7.66 (d, J=5.6 Hz, 1H), 7.20 (dd, J=8.9, 2.6 Hz, 1H), 7.04 (s, 1H), 6.65 (t, J=8.2 Hz, 1H), 6.40 (dd, J=16.9, 10.2 Hz, 1H), 6.18 (dd, J=17.0, 1.9 Hz, 1H), 5.72 (dd, J=10.2, 1.7 Hz, 1H), 3.75 (d, J=4.4 Hz, 3H), 3.34 (d, J=8.6 Hz, 3H), 2.91 (t, J=5.9 Hz, 2H), 2.75 (s, 3H), 2.34 (dd, J=11.2, 5.4 Hz, 2H), 2.20 (s, 6H).
- The synthetic method was similar to that described in Example 24, except that 1-(2-((5-amino-4-((2-dimethylaminoethyl)(methyl)amino)-2-methoxy-phenyl)amino)-5-fluoro-4-yl)-3-methyl-1H-benzo[d]imidazol-2(3H)-one (506-A-55) therein was replaced by 1-(2-(5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl amino)pyrimidin-4-yl)-3-(3-methylbut-2-enyl)-1H-benzo[d]imidazol-2(3H)-one (506-A-62) (110 mg, 0.2 mmol, 1.0 eq). N-(2-((2-(Dimethylamino)ethyl)(methyl)amino)-4-methoxy-5-(4-(3-(3-methylbut-2-enyl)-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)pyrimidin-2-ylamino)phenyl)acrylamide was obtained as a beige solid (60 mg, yield: 49%).
- The characterization data of Compound 62 were: LCMS (ESI): m/z 571 [M+H]+. m.p.: 187-188° C.; 1H NMR (500 MHz, DMSO-d6) δ 10.03 (s, 1H), 8.70 (s, 1H), 8.42 (d, J=5.5 Hz, 2H), 8.10 (s, 1H), 7.67 (d, J=5.4 Hz, 1H), 7.13 (d, J=10.0 Hz, 2H), 7.04 (s, 1H), 6.88 (s, 1H), 6.39 (dd, J=16.8, 10.2 Hz, 1H), 6.18 (d, J=16.8 Hz, 1H), 5.72 (d, J=10.1 Hz, 1H), 5.24 (s, 1H), 4.47 (d, J=6.2 Hz, 2H), 3.75 (s, 3H), 2.90 (s, 2H), 2.74 (s, 3H), 2.37 (d, J=28.5 Hz, 2H), 2.21 (s, 6H), 1.80 (d, J=20.1 Hz, 3H), 1.68 (s, 3H).
- The synthetic method was similar to that described in Example 24, except that 1-(2-((5-amino-4-((2-dimethylaminoethyl)(methyl)amino)-2-methoxy-phenyl)amino)-5-fluoro-4-yl)-3-methyl-1H-benzo[d]imidazol-2(3H)-one (506-A-55) therein was replaced by 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-3-(cyclopropylmethyl)-1H-benzo[d]imidazol-2 (3H)-one (506-A-63) (529 mg, 1.05 mmol, 1.0 eq). N-(5-((4-(3-(cyclopropylmethyl)-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)pyrimidin-2-yl)amino)-2-((2-(dimethylamino)ethyl)(methyl)amino)-4-methoxyphenyl)acrylamide was obtained as a cream colored solid (300 mg, yield: 51.4%).
- The characterization data of Compound 63 were: LCMS (ESI): m/z 557 [M+H]+. m.p.: 68-72° C.; 1H NMR (500 MHz, DMSO-d6) δ 10.04 (s, 1H), 8.70 (s, 1H), 8.43 (d, J=5.6 Hz, 2H), 8.10 (d, J=7.1 Hz, 1H), 7.67 (d, J=5.6 Hz, 1H), 7.30 (d, J=7.9 Hz, 1H), 7.15 (t, J=7.7 Hz, 1H), 7.05 (s, 1H), 6.89 (t, J=7.8 Hz, 1H), 6.39 (dd, J=16.9, 10.2 Hz, 1H), 6.18 (d, J=16.9 Hz, 1H), 5.72 (d, J=10.3 Hz, 1H), 3.77 (m, 5H), 2.91 (t, J=5.5 Hz, 2H), 2.75 (s, 3H), 2.34 (s, 2H), 2.21 (s, 6H), 0.47 (m, 2H), 0.40 (m, 2H).
- N4-(4-(1H-indol-1-yl)pyrimidin-2-yl)-N1-(2-(dimethylamino)ethyl)-5-methoxy-N1-methylbenzene-1,2,4-triamine (403-1) (200 mg, 0.464 mmol, 1.0 eq) was dissolved in acetonitrile (50 mL) and N,N-diisopropylethylamine (120 mg, 0.928 mmol, 2.0 eq), (E)-4-bromobut-2-enoic acid (602-71) (92 mg, 0.5568 mmol, 1.2 eq) and 2-(7-azobenzotriazole)-N,N,N′,N′-tetramethyluronium hexafluorophosphate (211 mg, 0.5568 mmol, 1.2 eq) were added in sequence, and then stirred at room temperature for 4 hours. When the reaction was completed, aqueous sodium carbonate solution was added and extracted with dichloromethane (3×100 mL). The organic layers were combined and concentrated in vacuo. The residue was purified by silica gel column chromatography (eluent: dichloromethane/methanol: 50:1 to 30:1) to give (E)-N-(5-((4-(1H-indol-1-yl)pyrimidin-2-yl)amino)-2-((2-(dimethylamino)ethyl)(methyl)amino)-4-methylphenyl)-4-bromobut-2-enamide as a yellow oil (200 mg, yield: 74.5%). MS (ESI): m/z 578 (M+1)+. The compound obtained above (200 mg, 0.346 mmol, 1.0 eq) was dissolved in methanol (25 mL) and then sodium methoxide (38 mg, 0.692 mmol, 2.0 eq) was added and stirred at room temperature overnight. When the reaction was completed, water was added and extracted with dichloromethane (100 mL×3). The organic layers were combined and concentrated in vacuo. The residue was purified by silica gel column chromatography (eluent: dichloromethane/methanol: 50/1) to give (E)-N-(5-(4-(1H-indol-1-yl)pyrimidin-2-ylamino)-2-((2-(dimethylamino)ethyl)(methyl)amino)-4-methylphenyl)-4-methoxybut-2-enamide as a yellow solid (40 mg, yield: 21%).
- The characterization data of Compound 71 were: LCMS (ESI): m/z 530 [M+H]+. m.p.: 193-200° C.; 1H NMR (500 MHz, CDCl3) δ 9.51 (s, 1H), 8.48 (d, J=5.6 Hz, 1H), 8.24 (d, J=8.3 Hz, 1H), 8.12 (s, 1H), 7.62 (d, J=7.4 Hz, 2H), 7.28 (m, 3H), 7.21 (t, J=7.2 Hz, 1H), 6.97 (m, 2H), 6.74 (m, 2H), 4.16 (d, J=2.8 Hz, 2H), 3.90 (s, 3H), 3.43 (s, 3H), 3.08 (s, 2H), 2.64 (m, 11H).
- The synthetic method was similar to that described in Example 6, except that N4-(4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-yl)-N1-(2-(dimethylamino)ethyl)-5-methoxy-N1-methylbenzene-1,2,4-triamine (403-A-5) therein was replaced by N4-(4-(1H-indol-1-yl)pyrimidin-2-yl)-5-methoxy-N1-methyl-N1-(2-(piperidin-1-yl)ethyl)benzene-1,2,4-triamine (150 mg, 0.318 mmol, 1.0 eq) (403-B-81). N-(5-(4-(1H-Indol-1-yl)pyrimidin-2-ylamino)-4-methoxy-2-(methyl(2-(piperidin-1-yl)ethyl)amino)phenyl)acrylamide was obtained as a yellow solid (25 mg, yield: 10.3%).
- The characterization data of Compound 81 were: LCMS (ESI): m/z 526 [M+H]+; m.p.: 131-136° C.; 1H NMR (500 MHz, DMSO-d6) δ 9.38 (s, 1H), 8.57 (s, 1H), 8.39 (m, 3H), 8.12 (d, J=3.7 Hz, 1H), 7.58 (d, J=7.2 Hz, 1H), 7.12 (m, 3H), 7.00 (s, 1H), 6.76 (d, J=3.6 Hz, 1H), 6.59 (dd, J=16.8, 10.2 Hz, 1H), 6.19 (m, 1H), 5.73 (m, 1H), 3.79 (s, 3H), 3.03 (d, J=5.1 Hz, 2H), 2.72 (s, 3H), 2.35 (m, 6H), 1.49 (s, 4H), 1.36 (d, J=19.9 Hz, 2H).
- Step 47a: Preparation of 5-fluoro-N1-isopropylbenzene-1,2-diamine (Intermediate 501-91): 2,4-Difluoronitrobenzene (10 g, 62.9 mmol, 1.0 eq), isopropylamine (4.8 g, 81.8 mmol, 1.5 eq) and potassium carbonate (17.4 g, 125.8 mmol, 2.0 eq) were dissolved in DMF (150 mL) and reacted at room temperature for 18 hours. The LCMS check indicated reaction completion and the reaction was poured into water (400 mL) and stirred for 30 minutes to allow crystallize to precipitate out completely. The mixture was filtered and the filter cake was wash with water. The filter cake was collected and dried in vacuum to give the product 5-fluoro-N-isopropyl-2-nitroaniline as a yellow solid (11.5 g, yield: 92.4%). The characterization data of this compound were: LCMS (ESI): m/z 199 [M+H]+. The compound obtained above (6.1 g, 62.9 mmol, 1.0 eq), iron powder (8.6 g, 154 mmol, 5.0 eq), ammonium chloride (8.2 g, 154 mmol, 3.0 eq) and water (20 mL) were dissolved in ethanol (100 mL). Under nitrogen protection condition, the reaction was heated to 85° C. and reacted for 3 hours. The LCMS check indicated reaction completion. The reaction solution temperature was lowered to room temperature, and the reaction solution was poured into water (200 mL) and then dichloromethane was added (200 mL). The mixture was stirred for 5 minutes and filtered through celite and the filtrate was partitioned. The organic phase was dried over anhydrous sodium sulfate and the solvent was rotary evaporated to give the product 5-fluoro-N1-isopropylbenzene-1,2-diamine as a red oil (11.5 g, yield: 92.4%). The characterization data of this compound were: LCMS (ESI): m/z 169 [M+H]+.
- Step 47b: Preparation of 6-fluoro-1-isopropyl-1H-benzo[d]imidazol-2(3H)-one (Intermediate 502-91): 5-Fluoro-N1-isopropylbenzene-1,2-diamine (501-91) (4.5 g, 26.8 mmol, 1.0 eq) was dissolved in dichloromethane (100 mL) and triethylamine (5.5 g, 53.6 mmol, 2.0 eq) was added. Under nitrogen protection, the reaction temperature was lowered to about 0° C. in an ice bath. Triphosgene (2.8 g, 9.38 mmol, 0.35 eq) in dichloromethane (50 mL) was added dropwise to the above reaction mixture with the control of temperature below 5° C. After addition, the mixture was reacted for about half an hour while controlling the temperature around 0° C. in an ice bath. The LCMS check indicated reaction completion and methanol (30 mL) was added and stirred for 10 minutes to quench the reaction. The reaction mixture was washed with water and saturated brine, dried over anhydrous magnesium sulfate and rotary evaporated to give the product 6-fluoro-1-isopropyl-1H-benzo[d]imidazol-2(3H)-one as a brown solid (4.6 g, yield: 88.5%). The characterization data of this compound were: LCMS (ESI): m/z 195 [M+H]+.
- Step 47c: Preparation of 1-(2-chloropyrimidin-4-yl)-5-fluoro-3-isopropyl-1H-benzo[d]imidazol-2 (3H)-one (Intermediate 503-91): 6-Fluoro-1-isopropyl-1H-benzo [d]imidazol-2(3H)-one (502-91) (4.6 g, 23.7 mmol, 1.0 eq) and 2,4-dichloropyrimidine (5.3 g, 35.6 mmol, 1.5 eq) were dissolved in DMF (80 mL) and cesium carbonate (11.6 g, 35.6 mmol, 1.5 eq) was then added and the mixture was reacted at room temperature overnight. The reaction was poured into water (100 mL) and stirred for 30 minutes (cooled to room temperature), filtered and the residue was washed with water and petroleum ether (200 mL). The solid was collected and slurried in methanol (100 mL), filtered and the filter cake was washed with methanol. The solid was collected and dried in vaccum to give the product 1-(2-chloropyrimidin-4-yl)-5-fluoro-3-isopropyl-1H-benzo[d]imidazol-2(3H)-one as a pink solid (6.1 g, yield: 83.6%). The characterization data of this compound were: LCMS (ESI): m/z 307 [M+H]+.
- Step 47d: Preparation of 1-(2-((4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxy-5-nitrophenyl)amino)pyrimidin-4-yl)-5-fluoro-3-isopropyl-1H-benzo[d]imidazol-2(3H)-one (Intermediate 505-A-91): 1-(2-Chloropyrimidin-4-yl)-5-fluoro-3-isopropyl-1H-benzo[d]imidazol-2(3H)-one (503-91) (2.8 g, 9.13 mmol, 1.0 eq) and 4-Fluoro-2-methoxy-5-nitroaniline (103) (1.87 g, 10.0 mmol, 1.1 eq) were dissolved in isopropyl alcohol (100 mL) and concentrated hydrochloric acid (2.0 mL) was then added dropwise and heated to 85° C. to react for 18 hours. The LCMS check indicated reaction completion and the reaction temperature was lowered to room temperature and filtration was performed. The filter cake was washed with petroleum ether (100 mL). The solid was collected and dried in vacuum to give the product 1-(2-((4-fluoro-2-methoxy-5-nitrophenyl)amino)pyrimidin-4-yl)-5-fluoro-3-isopropyl-1H-benzo[d]imidazol-2(3H)-one as a earthy yellow solid (3.4 g, yield: 81.0%). The characterization data of this compound were: LCMS (ESI): m/z 457 [M+H]+. The compound obtained above (3.4 g, 7.46 mmol, 1.0 eq), N,N,N-trimethylethylenediamine (1.5 g, 14.92 mmol, 2.0 eq) and N,N-diisopropylethylamine (2.9 g, 22.38 mmol, 3.0 eq) were dissolved in tetrahydrofuran (80 mL). The reaction system was heated to reflux to react for 18 hours. The reaction temperature was lowered to room temperature and then ethyl acetate (100 mL) was added, which was then washed with water and saturated brine, dried over anhydrous magnesium sulfate and rotary evaporated to give 1-(2-((4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxy-5-nitrophenyl)amino)pyrimidin-4-yl)-5-fluoro-3-isopropyl-1H-benzo[d]imidazol-2(3H)-one as a yellow solid (3.7 g, yield: 92.5%). The characterization data of this compound were: LCMS (ESI): m/z 539 [M+H]+.
- Step 47e: Preparation of 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-5-fluoro-3-isopropyl-1H-benzo[d]imidazol-2(3H)-one (Intermediate 506-A-91): 1-(2-((4-((2-(Dimethylamino)ethyl)(methyl)amino)-2-methoxy-5-nitrophenyl)amino)pyrimidin-4-yl)-5-fluoro-3-isopropyl-1H-benzo[d]imidazol-2(3H)-one (505-A-91) (3.7 g, 6.88 mmol, 1.0 eq), iron powder (1.9 g, 34.4 mmol, 5.0 eq), ammonium chloride (1.8 g, 34.4 mmol, 3.0 eq) and water (12 mL) were dissolved in ethanol (60 mL) and heated to 85° C. to react for 3 hours. The LCMS check indicated reaction completion to give 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-5-fluoro-3-isopropyl-1H-benzo[d]imidazol-2(3H)-one (11.5 g, yield: 92.4%). The characterization data of this compound were: LCMS (ESI): m/z 509 [M+H]+.
- Step 47f: Preparation of N-(2-((2-(dimethylamino)ethyl) (methyl)amino)-5-(4-(5-fluoro-3-isopropyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)pyrimidin-2-ylamino)-4-methoxyphenyl)acrylamide (Compound 91):
- Method 1: The reaction solution of 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-5-fluoro-3-isopropyl-1H-benzo[d]imidazol-2 (3H)-one (506-A-91) obtained above was cooled to about 0° C. with an ice-salt bath and to it 3-Chloropropionyl chloride (1.8 g, 13.76 mmol, 2.0 eq) in tetrahydrofuran (10 mL) was added dropwise. After addition, the reaction was stirred for 30 minutes while controlling the temperature around 0° C. The LCMS check indicated reaction completion and to the reaction water (100 mL) and dichloromethane (100 mL) was added and stirred for 10 minutes, filtered through celite in bush funnel and the filtrate was partitioned. The water phase was extracted with dichloromethane (50 mL). The organic phase was combined and the solvent was rotary evaporated to give a milk white residue which was slurried in ethyl acetate (50 mL), filtered and washed with ethyl acetate to give a white intermediate. The intermediate was dissolved in acetonitrile (50 mL), and then triethylamine (10 mL) was added and refluxed to react for 18 hours. The LCMS check indicated reaction completion. The temperature was lowered to room temperature and the mixture was poured into water (300 mL) and stirred for 1 hour to allow the solid to precipitate out completely and then filtered. The filter cake was washed with water and dissolved in dichloromethane (50 mL) which was washed with saturated brine, dried over anhydrous sodium sulfate and rotary evaporated to give the product N-(2-((2-(dimethylamino)ethyl) (methyl)amino)-5-(4-(5-fluoro-3-isopropyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)pyrimidin-2-ylamino)-4-methoxyphenyl) acrylamide as a white solid (2.9 g, yield: 75.1%). Method 2: 1-(2-((5-Amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-5-fluoro-3-isopropyl-1H-benzo[d]imidazol-2(3H)-one (506-A-91) (400 mg, 0.787 mmol, 1.0 eq) was dissolved in dichloromethane (50 mL) and triethylamine (0.328 mL, 2.36 mmol, 3.0 eq) was then added. The mixture temperature was lowered to −70° C. and a solution of 3-chloropropionyl chloride (601-1) (109 mg, 1.18 mmol, 1.5 eq) in dichloromethane (10 mL) was added dropwise. The mixture was reacted for 15 minutes and then quenched with methanol, extracted with dichloromethane which was then dried over anhydrous sodium sulfate and concentrated in vacuo. The residue was purified by silica gel column chromatography (eluent: dichloromethane/methanol=400/1 to 150/1) to give N-(2-((2-(dimethylamino)ethyl) (methyl)amino)-5-(4-(5-fluoro-3-isopropyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)pyrimidin-2-ylamino)-4-methoxyphenyl)acrylamide as a white solid (224 mg, yield: 50%).
- The characterization data of
Compound 91 were: LCMS (ESI): m/z 563 [M+H]+. m.p.: 225-227° C.; 1H NMR (500 MHz, DMSO-d6) δ 10.01 (s, 1H), 8.70 (s, 1H), 8.41 (m, 2H), 8.11 (s, 1H), 7.62 (d, J=5.6 Hz, 1H), 7.32 (d, J=9.3 Hz, 1H), 7.04 (s, 1H), 6.65 (t, J=8.9 Hz, 1H), 6.40 (dd, J=16.9, 10.2 Hz, 1H), 6.18 (d, J=16.8 Hz, 1H), 5.72 (d, J=10.3 Hz, 1H), 4.64 (m, 1H), 3.76 (s, 3H), 2.90 (d, J=5.2 Hz, 2H), 2.74 (s, 3H), 2.34 (s, 2H), 2.20 (s, 6H), 1.47 (d, J=6.9 Hz, 6H). - The synthetic method was similar to
method 2 of step 47f in EXAMPLE 47, except that 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-5-fluoro-3-isopropyl-1H-benzo[d]imidazol-2(3H)-one (506-A-91) therein was replaced by 1-(2-(5-amino-4-((2-(dimethylamino)ethyl) (methyl)amino)-2-methoxyphenylamino)pyrimidin-4-yl)-3-cyclopropyl-5-fluoro-1H-benzo[d]imidazol-2(3H)-one (868 mg, 1.72 mmol, 1.0 eq) (506-A-98). N-(5-(4-(3-Cyclopropyl-5-fluoro-2-oxo-2,3-dihydrobenzo[d]imidazol-1-yl)pyrimidin-2-ylamino)-2-((2-(dimethylamino)ethyl)(methyl)amino)-4-methoxyphenyl)acrylamide was obtained as a yellow solid (300 mg, yield: 31.1%). - The characterization data of Compound 98 were: LCMS (ESI): m/z 561 [M+H]+. m.p.: 181-184° C.; 1H NMR (500 MHz, DMSO-d6) δ 10.01 (s, 1H), 8.69 (s, 1H), 8.41 (m, 2H), 8.08 (s, 1H), 7.62 (d, J=5.6 Hz, 1H), 7.11 (dd, J=8.8, 2.6 Hz, 1H), 7.04 (s, 1H), 6.66 (t, J=8.4 Hz, 1H), 6.40 (dd, J=16.9, 10.2 Hz, 1H), 6.18 (dd, J=16.9, 1.8 Hz, 1H), 5.73 (dd, J=14.6, 4.4 Hz, 1H), 3.75 (s, 3H), 2.91 (t, J=5.2 Hz, 3H), 2.74 (s, 3H), 2.34 (s, 2H), 2.20 (s, 6H), 1.07 (m, 2H), 0.93 (m, 2H).
- The synthetic method was similar to
method 2 of step 47f in EXAMPLE 47, except that 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-5-fluoro-3-isopropyl-1H-benzo[d]imidazol-2(3H)-one (506-A-91) therein was replaced by 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-5-chloro-3-cyclopropyl-1,3-dihydro-2H-benzo[d]imidazol-2-one (160 mg, 0.31 mmol) (506-A-99). N-(5-((4-(5-Chloro-3-cyclopropyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)pyrimidin-2-yl)amino)-2-((2-(dimethylamino)ethyl)(methyl)amino)-4-methoxyphenyl)acrylamide was obtained as a yellow solid (40 mg, yield: 23%). - The characterization data of Compound 99 were: LCMS (ESI): m/z 577 [M+H]+. m.p.: 124-126° C.; 1H NMR (500 MHz, DMSO-d6) δ 10.03 (s, 1H), 8.70 (s, 1H), 8.42 (m, 2H), 8.04 (s, 1H), 7.60 (d, J=5.2 Hz, 1H), 7.26 (s, 1H), 7.05 (s, 1H), 6.87 (d, J=8.1 Hz, 1H), 6.39 (dd, J=16.6, 10.3 Hz, 1H), 6.18 (d, J=16.8 Hz, 1H), 5.72 (d, J=9.9 Hz, 1H), 3.75 (s, 3H), 2.91 (s, 3H), 2.74 (s, 3H), 2.34 (s, 2H), 2.21 (s, 6H), 1.07 (d, J=5.5 Hz, 2H), 0.93 (s, 2H).
- The synthetic method was similar to
method 2 of step 47f in EXAMPLE 47, except that 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-5-fluoro-3-isopropyl-1H-benzo[d]imidazol-2(3H)-one (506-A-91) therein was replaced by 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-3-cyclopropyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazole-5-carbonitrile (506-A-101) (200 mg, 0.39 mmol, 1.0 eq). N-(5-((4-(5-Cyano-3-cyclopropyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)pyrimidin-2-yl)amino)-2-((2-(dimethylamino)ethyl)(methyl)amino)-4-methoxyphenyl)acrylamide was obtained as a light yellow solid (130 mg, yield: 56%). - The characterization data of Compound 101 were: LCMS (ESI): m/z 568 [M+H]+. m.p.: 177-179° C.; 1H NMR (500 MHz, DMSO-d6) δ 9.92 (s, 1H), 8.77 (s, 1H), 8.47 (d, J=5.5 Hz, 1H), 8.30 (s, 1H), 8.21 (s, 1H), 7.68 (s, 1H), 7.57 (d, J=5.5 Hz, 1H), 7.35 (d, J=7.2 Hz, 1H), 7.03 (s, 1H), 6.56 (s, 1H), 6.19 (d, J=16.8 Hz, 1H), 5.72 (d, J=10.3 Hz, 1H), 3.78 (s, 3H), 2.97 (m, 3H), 2.65 (m, 5H), 2.36 (s, 6H), 1.09 (d, J=5.8 Hz, 2H), 0.95 (s, 2H).
- The synthetic method was similar to
method 2 of step 47f in EXAMPLE 47, except that 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-5-fluoro-3-isopropyl-1H-benzo[d]imidazol-2(3H)-one (506-A-91) therein was replaced by 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-3-cyclopropyl-5-methoxy-1,3-dihydro-2H-benzo[d]imidazol-2-one (506-A-102) (420 mg, 0.81 mmol, 1.0 eq). N-(5-((4-(3-Cyclopropyl-5-methoxy-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)pyrimidin-2-yl)amino)-2-((2-(dimethylamino)ethyl)(methyl)amino)-4-methoxyphenyl)acrylamide was obtained as beige solid (250 mg, yield: 54%). - The characterization data of Compound 102 were: LCMS (ESI): m/z 573 [M+H]+. m.p.: 144-146° C.; 1H NMR (500 MHz, DMSO-d6) δ 10.04 (s, 1H), 8.63 (s, 1H), 8.39 (m, 2H), 7.96 (d, J=8.5 Hz, 1H), 7.64 (d, J=5.6 Hz, 1H), 7.05 (s, 1H), 6.80 (d, J=2.3 Hz, 1H), 6.39 (m, 2H), 6.18 (dd, J=16.9, 1.4 Hz, 1H), 5.72 (d, J=11.1 Hz, 1H), 3.75 (d, J=7.1 Hz, 6H), 2.89 (m, 3H), 2.75 (s, 3H), 2.34 (t, J=5.7 Hz, 2H), 2.20 (s, 6H), 1.07 (q, J=6.9 Hz, 2H), 0.92 (m, 2H).
- The synthetic method was similar to
method 2 of step 47f in EXAMPLE 47, except that 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-5-fluoro-3-isopropyl-1H-benzo[d]imidazol-2(3H)-one (506-A-91) therein was replaced by 1-(2-(5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenylamino)pyrimidin-4-yl)-3-(cyclopropylmethyl)-5-fluoro-1H-benzo[d]imidazol-2(3H)-one (506-A-105) (520 mg, 1.0 mmol, 1.0 eq). N-(5-(4-(3-(Cyclopropylmethyl)-5-fluoro-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)pyrimidin-2-ylamino)-2-((2-(dimethylamino)ethyl)(methyl)amino)-4-methoxyphenyl)acrylamide was obtained as a beige solid (180 mg, yield: 31%). - The characterization data of Compound 105 were: LCMS (ESI): m/z 563 [M+H]+. m.p.: 168-169° C.; 1H NMR (500 MHz, DMSO-d6) δ 10.02 (s, 1H), 8.72 (s, 1H), 8.42 (m, 2H), 8.11 (s, 1H), 7.65 (d, J=4.9 Hz, 1H), 7.31 (d, J=7.8 Hz, 1H), 7.05 (s, 1H), 6.66 (s, 1H), 6.40 (dd, J=16.3, 10.2 Hz, 1H), 6.18 (d, J=16.9 Hz, 1H), 5.72 (d, J=9.6 Hz, 1H), 3.76 (s, 5H), 2.91 (s, 2H), 2.75 (s, 3H), 2.34 (s, 2H), 2.20 (s, 6H), 1.23 (s, 1H), 0.45 (m, 4H).
- The synthetic method was similar to
method 2 of step 47f in EXAMPLE 47, except that 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-5-fluoro-3-isopropyl-1H-benzo[d]imidazol-2(3H)-one (506-A-91) therein was replaced by 1-(2-(5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methylphenyl amino)pyrimidin-4-yl)-3-methyl-1,3-dihydro-2H-benzo[d]imidazol-2-one (506-A-118) (72 mg, 0.16 mmol, 1.0 eq). N-(2-((2-(Dimethylamino)ethyl) (methyl)amino)-4-methyl-5-((4-(3-methyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)pyrimidin-2-yl)amino)phenyl)acryl amide was obtained as a white solid (15 mg, yield: 18.7%). - The characterization data of Compound 118 were: LCMS (ESI): m/z 501 [M+H]+. m.p.: 208-210° C.; 1H NMR (500 MHz, DMSO-d6) δ 10.11 (s, 1H), 9.06 (s, 1H), 8.42 (d, J=5.6 Hz, 1H), 8.33 (s, 1H), 7.96 (s, 1H), 7.69 (d, J=5.6 Hz, 1H), 7.16 (m, 3H), 6.80 (d, J=7.0 Hz, 1H), 6.40 (dd, J=16.8, 10.3 Hz, 1H), 6.20 (d, J=16.9 Hz, 1H), 5.74 (d, J=11.2 Hz, 1H), 3.35 (s, 3H), 2.87 (s, 2H), 2.72 (s, 3H), 2.36 (s, 2H), 2.18 (m, 9H).
- The synthetic method was similar to that described in Example 24, except that 1-(2-((5-amino-4-((2-dimethylaminoethyl)(methyl)amino)-2-methoxy-phenyl)amino)-5-fluoro-4-yl)-3-methyl-1H-benzo[d]imidazol-2(3H)-one (506-A-55) therein was replaced by 1-{2-[5-Amino-4-[(2-dimethylamino-ethyl)-methyl-amino]-2-(2-methoxy-ethoxy)-phenyl amino]-pyrimidin-4-yl}-3-methyl-1,3-dihydro-benzoimidazol-2-one (506-A-120) (250 mg, 0.49 mmol, 1.0 eq). N-{2-[(2-Dimethylamino-ethyl)-methyl-amino]-4-(2-methoxy-ethoxy)-5-[4-(3-methyl-2-oxo-2,3-dihydro-benzoimidazol-1-yl)-pyrimidin-2-ylamino]-phenyl}-acrylamide (28 mg, yield: 10.2%) was obtained as a white waxy solid.
- The characterization data of Compound 120 were: LCMS (ESI): m/z 561 [M+H]+. m.p.: 71-78° C.; 1H NMR (500 MHz, DMSO-d6) δ 10.04 (s, 1H), 8.60 (s, 1H), 8.52 (s, 1H), 8.45 (d, J=5.6 Hz, 1H), 8.10 (d, J=7.4 Hz, 1H), 7.71 (d, J=5.6 Hz, 1H), 7.17 (m, 2H), 7.07 (s, 1H), 6.90 (t, J=7.6 Hz, 1H), 6.39 (dd, J=16.9, 10.2 Hz, 1H), 6.18 (dd, J=16.9, 1.8 Hz, 1H), 5.72 (m, 1H), 4.08 (m, 2H), 3.52 (m, 2H), 3.38 (d, J=9.6 Hz, 3H), 3.19 (s, 3H), 2.89 (t, J=5.7 Hz, 2H), 2.72 (s, 3H), 2.33 (s, 2H), 2.21 (s, 6H).
- The synthetic method was similar to that described in Example 6, except that N4-(4-(1H-indol-1-yl)-5-(trifluoromethyl)pyrimidin-2-yl)-N1-(2-(dimethylamino)ethyl)-5-methoxy-N1-methylbenzene-1,2,4-triamine (403-A-5) therein was replaced by N4-(4-(5-chloro-1H-pyrrolo[3,2-b]pyridin-1-yl)pyrimidin-2-yl)-N1-(2-(dimethylamino)ethyl)-5-methoxy-N1-methylbenzene-1,2,4-triamine (200 mg, 0.43 mmol, 1.0 eq). N-(5-((4-(5-Chloro-1H-pyrrolo[3,2-b]pyridin-1-yl) pyrimidin-2-yl)amino)-2-((2-(dimethylamino)ethyl)(methyl)amino)-4-methoxyphenyl)acrylamide was obtained as a beige solid (140 mg, yield: 63%).
- The characterization data of Compound 124 were: LCMS (ESI): m/z 521 [M+H]+. m.p.: 127-129° C.; 1H NMR (500 MHz, DMSO) δ 10.12 (s, 1H), 9.03 (s, 1H), 8.37 (d, J=5.6 Hz, 2H), 8.29 (s, 1H), 8.08 (d, J=3.6 Hz, 1H), 7.56 (d, J=7.7 Hz, 1H), 7.24 (s, 1H), 7.10 (m, 2H), 6.98 (t, J=7.5 Hz, 1H), 6.75 (d, J=3.6 Hz, 1H), 6.40 (dd, J=16.9, 10.2 Hz, 1H), 6.19 (dd, J=16.9, 1.7 Hz, 1H), 5.74 (dd, J=10.2, 1.6 Hz, 1H), 2.89 (t, J=5.3 Hz, 2H), 2.74 (s, 3H), 2.36 (s, 2H), 2.20 (d, J=23.4 Hz, 9H).
- The synthetic method was similar to
method 2 of step 47f in EXAMPLE 47, except that 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-5-fluoro-3-isopropyl-1H-benzo[d]imidazol-2(3H)-one (506-A-91) therein was replaced by 1-(2-((3-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)phenyl)amino) pyrimidin-4-yl)-3-methyl-1,3-dihydro-2H-benzo[d]imidazol-2-one (506-A-125) (110 mg, 0.26 mmol, 1.0 eq). N-(2-((2-(Dimethylamino)ethyl)(methyl)amino)-5-((4-(3-methyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)pyrimidin-2-yl)amino)phenyl)acrylamide was obtained as a white solid (50 mg, 0.1 mmol, yield: 38.5%). - The characterization data of Compound 125 were: LCMS (ESI): m/z 487 [M+H]+. m.p.: 190-193° C.; 1H NMR (500 MHz, DMSO-d6) δ 10.18 (s, 1H), 9.63 (s, 1H), 8.51 (dd, J=17.1, 9.4 Hz, 3H), 7.76 (d, J=5.6 Hz, 1H), 7.53 (d, J=8.2 Hz, 1H), 7.25 (m, 3H), 7.07 (t, J=7.0 Hz, 1H), 6.40 (dd, J=16.9, 10.1 Hz, 1H), 6.24 (d, J=16.8 Hz, 1H), 5.77 (d, J=10.2 Hz, 1H), 3.39 (s, 3H), 2.84 (t, J=5.5 Hz, 2H), 2.66 (d, J=23.7 Hz, 3H), 2.29 (t, J=5.1 Hz, 2H), 2.22 (d, J=12.1 Hz, 6H).
- The synthetic method was similar to
method 1 of step 47f in EXAMPLE 47, except that 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-5-fluoro-3-isopropyl-1H-benzo[d]imidazol-2(3H)-one (506-A-91) therein was replaced by 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methylphenyl)amino)pyrimidin-4-yl)-3-isopropyl-1,3-dihydro-2H-benzo[d]imidazol-2-one (506-A-127) (360 mg, 0.77 mmol, 1.0 eq). N-(2-((2-(Dimethylamino)ethyl)(methyl)amino)-5-((4-(3-isopropyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)pyrimidin-2-yl)amino)-4-methylphenyl)acryl amide was obtained as a white solid (15 mg, yield: 8%). - The characterization data of Compound 127 were: LCMS (ESI): m/z 529 [M+H]+. m.p.: 179-181° C.; 1H NMR (500 MHz, DMSO-d6) δ 10.12 (s, 1H), 9.04 (s, 1H), 8.38 (d, J=43.5 Hz, 2H), 7.97 (s, 1H), 7.65 (s, 1H), 7.33 (d, J=6.6 Hz, 1H), 7.23 (s, 1H), 7.09 (s, 1H), 6.77 (s, 1H), 6.40 (m, 1H), 6.20 (d, J=16.5 Hz, 1H), 5.74 (d, J=8.9 Hz, 1H), 4.66 (s, 1H), 2.86 (s, 2H), 2.72 (s, 3H), 2.34 (s, 2H), 2.18 (d, J=32.8 Hz, 9H), 1.47 (d, J=5.0 Hz, 6H).
- The synthetic method was similar to
method 1 of step 47f in EXAMPLE 47, except that 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-5-fluoro-3-isopropyl-1H-benzo[d]imidazol-2(3H)-one (506-A-91) therein was replaced by 1-(2-((4-((2-(dimethylamino)ethyl)(methyl)amino)-3-aminophenyl)amino)pyrimidin-4-yl)-3-isopropyl-1H-benzo[d]imidazol-2(3H)-one (506-A-128) (650 mg, 1.33 mmol, 1.0 eq). N-(2-((2-(Dimethylamino)ethyl)(methyl)amino)-5-((4-(3-isopropyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)pyrimidin-2-yl)amino)phenyl)acrylamide was obtained as a white solid (390 mg, yield: 54%). - The characterization data of Compound 128 were: LCMS (ESI): m/z 515 [M+H]+; m.p.: 85-90° C.; NMR (500 MHz, DMSO-d6) δ 10.19 (s, 1H), 9.62 (s, 1H), 8.51 (dd, J=16.1, 5.7 Hz, 3H), 7.73 (d, J=5.6 Hz, 1H), 7.53 (dd, J=8.6, 1.7 Hz, 1H), 7.40 (d, J=7.9 Hz, 1H), 7.27 (d, J=8.7 Hz, 1H), 7.19 (t, J=7.7 Hz, 1H), 7.05 (t, J=7.8 Hz, 1H), 6.40 (dd, J=16.9, 10.1 Hz, 1H), 6.25 (dd, J=16.9, 1.8 Hz, 1H), 5.77 (m, 1H), 4.71 (dd, J=13.9, 7.0 Hz, 1H), 2.83 (t, J=5.6 Hz, 2H), 2.68 (s, 3H), 2.29 (t, J=5.6 Hz, 2H), 2.20 (s, 6H), 1.51 (d, J=6.9 Hz, 6H).
- The synthetic method was similar to
method 1 of step 47f in EXAMPLE 47, except that 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-5-fluoro-3-isopropyl-1H-benzo[d]imidazol-2(3H)-one (506-A-91) therein was replaced by 1-(2-((4-((2-(dimethylamino)ethyl)(methyl)amino)-2-isopropyl-5-aminophenyl)amino)pyrimidin-4-yl)-3-methyl-1,3-dihydro-2H-benzo[d]imidazol-2-one (506-A-132) (500 mg, 0.99 mmol, 1.0 eq). N-(2-((2-(Dimethylamino)ethyl)(methyl)amino)-4-isopropyl-5-((4-(3-methyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)pyrimidin-2-yl)amino)phenyl)acryl amide was obtained as a yellow solid (73 mg, yield: 16%). - The characterization data of Compound 132 were: LCMS (ESI): m/z 529 [M+H]+; 1H NMR (500 MHz, DMSO-d6) δ 10.08 (s, 1H), 9.02 (s, 1H), 8.40 (d, J=5.6 Hz, 1H), 8.24 (s, 1H), 7.83 (s, 1H), 7.66 (d, J=5.6 Hz, 1H), 7.28 (s, 1H), 7.13 (m, 2H), 6.73 (s, 1H), 6.40 (dd, J=16.9, 10.2 Hz, 1H), 6.19 (dd, J=16.9, 1.7 Hz, 1H), 5.73 (d, J=11.6 Hz, 1H), 3.34 (s, 3H), 3.13 (dt, J=13.7, 6.8 Hz, 1H), 2.92 (dd, J=23.6, 18.3 Hz, 2H), 2.76 (s, 3H), 2.37 (s, 2H), 2.21 (s, 6H), 1.09 (t, J=9.4 Hz, 6H).
- The synthetic method was similar to
method 1 of step 47f in EXAMPLE 47, except that 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-5-fluoro-3-isopropyl-1H-benzo[d]imidazol-2(3H)-one (506-A-91) therein was replaced by 1-(2-((4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxy-5-aminophenyl)amino)-5-methoxypyrimidin-4-yl)-3-isopropyl-1H-benzo[d]imidazol-2(3H)-one (506-A-133) (660 mg, 1.2 mmol, 1.0 eq). N-(2-((2-(Dimethylamino)ethyl) (methyl)amino)-5-((4-(3-isopropyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)-5-methoxypyrimidin-2-yl)amino)-4-methoxyphenyl)acrylamide was obtained as a white solid (310 mg, yield: 42.7%). - The characterization data of Compound 133 were: LCMS (ESI): m/z 575 [M+H]+. m.p.: 92-95° C.; 1H NMR (500 MHz, DMSO-d6) δ 10.00 (s, 1H), 8.65 (s, 1H), 8.58 (s, 1H), 8.20 (s, 1H), 7.36 (d, J=7.9 Hz, 1H), 7.03 (m, 4H), 6.30 (ddd, J=18.4, 17.0, 5.8 Hz, 2H), 5.74 (d, J=11.4 Hz, 1H), 4.64 (m, 1H), 3.81 (d, J=6.0 Hz, 6H), 2.83 (t, J=5.7 Hz, 2H), 2.68 (s, 3H), 2.27 (t, J=5.7 Hz, 2H), 2.18 (s, 6H), 1.49 (d, J=6.9 Hz, 6H).
- The synthetic method was similar to
method 1 of step 47f in EXAMPLE 47, except that 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-5-fluoro-3-isopropyl-1H-benzo[d]imidazol-2(3H)-one (506-A-91) therein was replaced by 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl) amino)-5-(dimethylamino)pyrimidin-4-yl)-3-isopropyl-1,3-dihydro-2H-benzo[d]imidazol-2-one. N-(5-((5-(Dimethylamino)-4-(3-isopropyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)pyrimidin-2-yl)amino)-2-((2-(dimethylamino)ethyl)(methyl)amino)-4-methoxyphenyl)acrylamide was obtained as a white solid (90 mg, yield: 13.9%). - The characterization data of Compound 135 were: LCMS (ESI): m/z 588 [M+H]+. m.p.: 114.6-116.2° C.; 1H NMR (500 MHz, DMSO) δ 10.15 (s, 1H), 9.69 (s, 1H), 8.48 (s, 1H), 8.41 (s, 1H), 8.10 (s, 1H), 7.36 (d, J=7.9 Hz, 1H), 7.07 (t, J=7.7 Hz, 1H), 6.98 (t, J=7.6 Hz, 1H), 6.88 (d, J=6.3 Hz, 2H), 6.22 (d, J=16.9 Hz, 1H), 5.69 (d, J=10.6 Hz, 1H), 4.63 (dt, J=13.8, 6.9 Hz, 1H), 3.82 (s, 3H), 3.15 (d, J=63.2 Hz, 4H), 2.71 (d, J=42.9 Hz, 6H), 2.55 (s, 3H), 2.50 (s, 6H), 1.47 (d, J=6.9 Hz, 6H).
- The synthetic method was similar to
method 1 of step 47f in EXAMPLE 47, except that 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-5-fluoro-3-isopropyl-1H-benzo[d]imidazol-2(3H)-one (506-A-91) therein was replaced by 1-(2-((4-((2-(dimethylamino)ethyl)(methyl) amino)-2-methoxy-5-aminophenyl)amino)pyrimidin-4-yl)-3-isopropyl-5-methoxy-1H-benzo[d]imidazol-2(3H)-one (506-A-138) (1.3 g, 2.36 mmol, 1.0 eq). N-(2-((2-(Dimethylamino)ethyl)(methyl)amino)-5-((4-(3-isopropyl-5-methoxy-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)pyrimidin-2-yl)amino)-4-methoxyphenyl)acrylamide was obtained as a white solid (940 mg, yield: 65.7%). - The characterization data of Compound 138 were: LCMS (ESI): m/z 575 [M+H]+; m.p.: 95-98° C.; 1H NMR (500 MHz, DMSO-d6) δ 10.04 (s, 1H), 8.63 (s, 1H), 8.40 (m, 2H), 8.00 (d, J=8.5 Hz, 1H), 7.66 (d, J=5.7 Hz, 1H), 7.05 (s, 1H), 6.90 (d, J=2.4 Hz, 1H), 6.40 (m, 2H), 6.19 (dd, J=17.0, 1.8 Hz, 1H), 5.73 (dd, J=14.4, 4.3 Hz, 1H), 4.64 (m, 1H), 3.75 (s, 6H), 2.91 (t, J=5.7 Hz, 2H), 2.75 (s, 3H), 2.34 (t, J=5.6 Hz, 2H), 2.20 (s, 6H), 1.47 (d, J=6.9 Hz, 6H).
- The synthetic method was similar to
method 1 of step 47f in EXAMPLE 47, except that 1-(2-((5-amino-4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxyphenyl)amino)pyrimidin-4-yl)-5-fluoro-3-isopropyl-1H-benzo[d]imidazol-2(3H)-one (506-A-91) therein was replaced by 1-(2-((4-((2-(dimethylamino)ethyl)(methyl)amino)-2-methoxy-5-aminophenyl)amino)pyrimidin-4-yl)-5-hydroxy-3-isopropyl-1H-benzo[d]imidazol-2(3H)-one (35 mg, 0.065 mmol, 1.0 eq). N-(2-((2-(Dimethylamino)ethyl)(methyl)amino)-5-((4-(5-hydroxy-3-isopropyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)pyrimidin-2-yl)amino)-4-methoxyphenyl)acrylamide was obtained as a white solid (20 mg, yield: 54.8%). - The characterization data of Compound 139 were: LCMS (ESI): m/z 561 [M+H]+; m.p.: 115-117° C.; 1H NMR (500 MHz, DMSO) δ 10.06 (s, 1H), 9.35 (s, 1H), 8.62 (s, 1H), 8.38 (d, J=15.4 Hz, 2H), 7.89 (s, 1H), 7.66 (s, 1H), 7.03 (s, 1H), 6.69 (s, 1H), 6.26 (dd, J=67.7, 30.1 Hz, 3H), 5.73 (s, 1H), 4.58 (s, 1H), 3.74 (s, 3H), 2.90 (s, 2H), 2.75 (s, 3H), 2.34 (s, 2H), 2.18 (d, J=26.7 Hz, 6H), 1.45 (s, 6H).
- I. Enzyme Activity Inhibition Assay
- 1. Assay Methods
- (1) EGFR T790M/L858R Activity Inhibition Assay
- The activity of EGFR T790M/L858R protein kinase was tested by Caliper mobility shift assay (see J Biomol Screen 14:31, 2009).
- The assay procedure is as follows. The object compound was dissolved in DMSO, and then diluted by a kinase buffer (50 mM HEPES-pH7.5, 0.0015% Brij-35, 10 mM MgCl2, 2 mM DTT). 5 μl of the compound dissolved in 10% DMSO at a concentration of 5-fold of the final reaction concentration was added to a 384 well plate. 5 μl of 10% DMSO was used in a no-compound control well, while 5 μl of a kinase buffer was used in a no-enzyme activity control well. 10μ of 2.5-fold diluted EGFR T790M L858R (Invitrogen, Cat. No PR8911A, Lot. 1498821A) enzyme solution was added, followed by incubation at room temperature for 10 minutes. Then 10 μl of a 2.5-fold diluted substrate solution of Peptide FAM-P22 (GL Biochem, Cat. No. 112393, Lot. No. P130408-ZB112393) was further added. After 60 minutes of incubation at 28° C., the reaction was stopped by adding 25 μl of a stop solution (100 mM HEPES, pH 7.5, 0.015% Brij-35, 0.2% Coating Reagent #3). The conversion rate was read on Caliper EZ Reader II (Caliper Life Sciences). The conversion rate was then converted to inhibitory rate.
- As used herein, “max” refers to the conversion rate of the DMSO no-compound control well, and “min” refers to the conversion rate of the no-enzyme activity control well. A curve was obtained by plotting the inhibitory rate as a function of the compound concentration. The XLFit excel add-in version 4.3.1 software was used to fit the curve and calculate the IC50. Inhibitory rate %=(max−conversion rate)/(max−min)×100.
- (2) EGFR T790M Activity Inhibition Assay
- The activity of EGFR T790M protein kinase was tested by Caliper mobility shift assay (see J Biomol Screen 14:31, 2009).
- The assay procedure is as follows. The object compound was dissolved in DMSO, and then diluted by a kinase buffer (50 mM HEPES-pH7.5, 0.0015% Brij-35, 10 mM MgCl2, 2 mM DTT). 5 μl of the compound dissolved in 10% DMSO at a concentration of 5-fold of the final reaction concentration was added to a 384 well plate. 50 of 10% DMSO was used in a no-compound control well, while 5 μl of a kinase buffer was used in a no-enzyme activity control well. 10μ of 2.5-fold diluted EGFR T790M (Invitrogen, Cat. No PR8052A, Lot. 1229180E) enzyme solution was added, followed by incubation at room temperature for 10 minutes. Then 10 μl of a 2.5-fold diluted substrate solution of Peptide FAM-P22 (GL Biochem, Cat. No. 112393, Lot. No. P130408-ZB112393) was further added. After 60 minutes of incubation at 28° C., the reaction was stopped by adding 25 μl of a stop solution (100 mM HEPES, pH 7.5, 0.015% Brij-35, 0.2% Coating Reagent #3). The conversion rate was read on Caliper EZ Reader II (Caliper Life Sciences). The conversion rate was then converted to inhibitory rate.
- As used herein, “max” refers to the conversion rate of the DMSO no-compound control well, and “min” refers to the conversion rate of the no-enzyme activity control well. A curve was obtained by plotting the inhibitory rate as a function of the compound concentration. The XLFit excel add-in version 4.3.1 software was used to fit the curve and calculate the IC50. Inhibitory rate %=(max−conversion rate)/(max−min)×100.
- 2. Assay Results
- The median inhibitory concentration (IC50) of each compound in the above assay was calculated. The assay results are shown in Table 1 below.
-
TABLE 1 Results of enzyme activity inhibition (IC50) EGFR EGFR EGFR EGFR Compound T790M/L858R T790M Compound T790M/ L858R T790M 5 IV 6 IV 8 V 10 IV 11 IV 20 V 27 V 28 V 29 V 30 V 31 V 33 V 34 IV 36 V 37 V 38 V 39 V 41 V 46 IV 50 V 51 V 52 V 53 V 57 IV 62 V 63 V 66 III 67 II 68 III 69 V 70 IV 71 IV 73 IV 74 IV 77 IV 78 IV 79 V 80 IV 81 IV 82 IV 84 III 91 V 98 V 99 IV 101 V 102 V 105 V 118 V 120 IV 124 V 125 V 127 V 128 V 132 IV 133 IV 135 IV 138 IV 139 V AZD9291 V V CO-1686 IV IV - As used herein, I>100 nM, 100 nM≥II>50 nM, 50 nM≥III>10 nM, 10 nM≥IV>1 nM, V≤1 nM.
- As can be seen from the above table, these compounds can selectively inhibit the T790M EGFR, including single-point mutation T790M and double-point mutation (such as T790M/L858R).
- II. Inhibition assay on tumor cell proliferation
- 1. Assay Methods
- By using a CellTiter-Glo luminescence cell viability test kit (Promega, # G7572), the content of adenosine triphosphate (ATP) was determined to assess the cell viability.
- Human non-small-cell lung cancer tumor cell line H1975 carries L858R and T790M epidermal growth factor receptor (EGFR) double mutation. Human colon cancer cell line LOVO and human non-small-cell lung cancer H358 express wild-type EGFR. Human non-small-cell lung cancer cell line HCC827 carries deletion mutation in exon 19 (ex19del). Those cell lines are purchased from Shanghai Fudan IBS Cell Resource Center and American Tissue Culture Collection (ATCC).
- The assay procedure is as follows. The cells in a cell culture plate were digested with a pancreatic enzyme, re-suspended in a DPBS culture medium, and had the cell density counted by Scepter automated cytometer (Millipore # PHCC00000). The cells were diluted to a solution of 44,000 cells per ml. The cell solution with adjusted density was added to the cell assay plate at 90 microliters per well. The plate was placed in an incubator with 5% CO2 at 37° C. for 24 hours of incubation, and then added with different concentrations of subject compounds. The cells were incubated for 72 hours with the compounds in presence of 10% bovine serum. The content of ATP was determined by a CellTiter-Glo® Luminescent Cell Viability Assay kit (see the manufacturer's instruction for details) to evaluate cell-growth inhibition.
- Briefly, 30 μl of CellTiter-Glo® reagent was added to each well, and then shaken for 10 minutes to induce cell lysis. The fluorescent signal was detected and recorded by Fluoroskan Ascent FL (Thermo). The max signal value was obtained from the cells treated by dimethyl sulfoxide for 72 hours. The min signal value was obtained from the medium alone (the number of the cells was 0). Inhibitory rate %=(max signal value−compound signal value)/(max signal value−min signal value)×100. The data was processed by GraphPad Prism V5.0 software (GraphPad Software, San Diego, Calif.). Sigmoidal dose-response curve fitting was performed to calculate the IC50 value.
- 2. Assay Results
- The IC50 of each compound in the above assay was calculated. The assay results are as shown in Table 2 below.
-
TABLE 2 Results (IC50) of inhibition assay on tumor cell proliferation Compound H1975 HCC827 LOVO H358 5 V I II 6 V I I 8 V I II 10 V I II 20 V II 27 V I II 28 V I II 29 V I II 30 V I II 31 V I 33 V I II 34 V I II 36 V I II 37 V I II 38 V I II 39 V V I II 41 V I II 46 IV I I 50 V II 51 V I II 52 V I II 53 IV I III 57 IV I I 62 V II 63 V I 69 III II II 70 II II II 73 III I I 77 IV I 78 IV I I 79 III I I 80 V I I 82 III I 91 V II 98 V II 99 V II 101 V II 102 V II 105 V II 118 V II 124 V II 125 V II 127 V I 128 V II 132 V I 133 V I 135 IV I 138 V II 139 V II AZD9291 V V I II CO-1686 IV II I II - As used herein, I>1 μM, 1 μM≥II>0.1 μM, 0.1 μM≥III>0.05 μM, 0.05 μM≥IV>0.01 μM, V≤0.01 μM. AZD9291 and CO-1686 are positive control drugs.
- As can be seen from the above table, these compounds have strong inhibitory activity on cell proliferation of L858R/T790M EGFR mutation cells (such as H1975), and also have strong inhibiting activity on HCC827 with deletion mutation in
exon 19. However, these compounds have weak inhibitory activity on cell proliferation of wild-type EGFR cell (such as LOVO and H358), thus having high selectivity. - III. Pharmacokinetic (PK) Experiments
- 1. Assay Methods
- Male SD rats weighing 250-300 g, or male beagles weighing 9-10 kg, were fasted overnight before the experiment. The object compounds were dissolved in 30% sulfobutylated beta-cyclodextrin (SBE-β-CD), and orally administrated to the rats at a dose of 20 mg/kg or to the beagles at a dose of 5 mg/kg. Blood samples were taken at 15 minutes, 30 minutes, 1 hour, 2 hours, 3 hours, 4 hours, 6 hours, 8 hours and 24 hours after administration. 0.3 ml of blood was collected at every time point, placed in a centrifuge tube containing K2-EDTA (ethylenediamine tetraacetic acid dipotassium) and centrifuged (2,000 g, 10 minutes, 4° C.) to collect plasma, which was then stored in an ultra cold storage freezer at −80° C. 50 μL of plasma sample was mixed with 5 μL of internal standard (IS), and then extracted with ethyl acetate. After vacuum drying, the residue was re-dissolved in acetonitrile. The sample was filtered and injected into LC-MS/MS for analysis.
- 2. Assay Results
- The
compounds -
TABLE 3 Pharmacokinetics in rats after oral administration (20 mg/kg) Compound PK parameter 20 50 62 91 124 Tmax (hr) 1.67 1.0 3.7 1.0 1.7 Cmax (ng/ml) 349.7 172.7 84.0 292.3 327.0 T1/2 (hr) 3.7 3.1 6.8 3.0 6.1 AUC0-24 (hr × ng/mL) 1437.7 561.4 834.4 1341.5 1695.1 AUCinf (hr × ng/mL) 1449.75 597.5 920.4 1346.0 1789.2 -
TABLE 4 Pharmacokinetics in beagles after oral administration (5 mg/kg) Compound PK parameter 50 91 Tmax (hr) 1 1.67 Cmax (ng/ml) 428 109.2 T1/2 (hr) 1.45 4.37 AUC0-24 (hr × ng/mL) 1423.4 785.6 AUCinf (hr × ng/mL) 1465.2 813.5 - IV. Human H1975 Non-Small-Cell Lung Cancer Tumor Xenograft Mouse Model Assay
- Balb/C nude mice were purchased from Beijing Vital River Laboratory Animal Technology Co., Ltd., and housed in SPF animal room. The human non-small-cell lung cancer cell line H1975 in a culture dish was collected by trypsin-EDTA (0.25% trypsin, 1 mM EDTA), and then washed with a serum-free PBS solution. Lastly, the cells were implanted after diluted in a serum-free medium. Only the single cell suspension with a survival rate over 90% (Trypan blue rejection) can be used for injection. 5 million cells suspended in a 0.1 ml serum-free culture were injected into the front right flanking subcutaneous region of each mouse by using a 1 ml syringe and a 25G syringe needle, and the blood vessel was carefully avoided. The tumor size was measured in about one week after implantation. A caliper rule was used to measure the tumor size. The tumor volume was calculated by the following formula: tumor volume=(length×width2)/2.
- V. Pharmacokinetic Experiments of Tumor Model
- 1. Assay Methods
- When the volume of H1975 xenograft tumor reached a volume of about 400 mm3, the animals were divided into 6 oral administration groups, that is, excipient control group (0 hour) and groups of 30 minutes, 2 hours, 4 hours, 8 hours, and 24 hours after administration (3 animals at each time point). The
compound 91 was dissolved in 30% sulfobutylated beta-cyclodextrin (SBE-β-CD) and 1 N HCl (pH 3-4) at a concentration of 3 mg/ml, and gavage administration at a dose of 30 mg/kg was performed. The mice were euthanized by CO2 at the above time points. Then their blood was collected from the heart and placed in a centrifuge tube containing K2-EDTA, and subjected to plasma collection by centrifugation. The tumor tissue was collected, cooled in liquid nitrogen immediately, and then stored under −80° C. until pharmacokinetic analysis. - Pharmacokinetic analysis was performed as below: the plasma sample and tumor tissue homogenate sample were mixed with 5 microliter of internal standard (IS), and then extracted with ethyl acetate. After vacuum drying, the residue was re-dissolved in acetonitrile. The sample was filtered and injected into LC-MS/MS for analysis.
- 2. Assay Results
- As shown in
FIG. 1 and the table below, thecompound 91 was absorbed quickly after oral administration. The plasma peak time and the tumor tissue peak time were 0.5 hour and 4 hours, respectively. The Cmax values were 1723.3 ng/ml and 868.0 ng/ml, respectively. The AUC0-24h (6434.6 ng/ml*hr) of tumor tissue and AUC0-24h (5095.6 ng/ml*hr) of plasma were similar. -
TABLE 5 Pharmacokinetic parameters of compound 91 in H1975 xenograft tumormice after oral administration (30 mg/kg) PK parameter Plasma Tumor t1/2 (h) 3.1 5.5 Tmax (h) 0.5 4.0 Cmax (ng/ml) 1723.3 868.0 AUC0-24 (ng/ml * h) 5095.6 6434.6 AUC0-inf (ng/ml * h) 5127.6 6838.2 - V. Pharmacodynamic Experiments of Tumor Model
- 1. Assay Method
- When the H1975 xenograft tumor reached a volume of about 2,000 mm3, the animals were divided into 4 oral administration groups, that is, excipient control group (0 hour) and groups of 2 hours, 4 hours, and 8 hours after administration (3 to 4 animals at each time point). The
compound 91 was dissolved in 30% sulfobutylated beta-cyclodextrin (SBE-β-CD) and 1N HCl (pH 3-4) at a concentration of 3 mg/ml. Gavage administration at a dose of 30 mg/kg was performed. The mice were euthanized by CO2 at the above time points. The tumor tissues were collected, immediately cooled in liquid nitrogen, and then stored under −80° C. - 20 mg of tumor tissue was homogenized in 300 μl of protein extract (RIPA, CST, #9806). A phosphatase inhibitor (1:100 v/v, Protease Inhibitor Cocktail, sigma, # P8340) and 100 mM/L PMSF (1:100 v/v) were also added to the protein extract. The tissue lysate was centrifuged at 12,000 rpm for 15 minutes at 4° C. Then 200 μl of supernatant was collected and stored at −80° C. The protein concentration was determined by Bradford method (Beyotime, # P0006). After a loading buffer (Beyotime, # P0015L) was added and heated for 5 minutes at 100° C., the protein was separated by 8%-10% SDS-PAGE electrophoresis and transferred to a PVDF membrane. The membrane was blocked with 5% BSA (Beyotime, # ST023) for 60 minutes, added with a β-actin Antibody (CST, #4970), a Mouse Anti-EGFR Antibody (BD, #610017), or a Human Phospho-EGFR/ErbB1 (Y1068) Mouse Antibody (R&D, # MAB3570), incubated overnight at 4° C., and then washed using 1×TBST solution for 3×5 minutes. The membrane was incubated with a fluorescent secondary antibody IRDye@800CW Goat (polyclonal) Anti-Mouse lgG (H+L), Highly Cross Adsorbed (LI-COR, 926-32210) and IRDye@680CW Goat (polyclonal) Anti-Rabbit lgG (H+L), and Highly Cross Adsorbed (LI-COR, #926-68071) at room temperature in dark for 2 hours, and washed again under the same wash condition as described above. Lastly, the membrane was placed in LI-COR Odyssey infrared fluorescent scanning imaging system for imaging and detection.
- 2. Assay Results
- As shown in
FIG. 2 , after oral administration ofcompound 91 at a dose of 30 mg/kg, the phosphorylation of non-small-cell lung cancer cell line H1975 EGFR with L858R and T790MEGFR double mutation was inhibited. The inhibition effect was strong at 2 hours and 4 hours, and there was still an obvious inhibition effect at 8 hours. - VI. The Potency Assay of Tumor Model
- 1. Assay Method
- This experiment studied the inhibition of tumor growth in H1975 xenograft tumor model by the
compounds compound 20, compound 50,compound 91, and compound 118, respectively (n=8/group). These compounds were dissolved in 30% sulfobutylated beta-cyclodextrin (SBE-β-CD) and 1N HCl (pH 3-4). Gavage administration at a dose of 10 mg/kg was performed once a day for 16 consecutive days. - Further assay was performed to assess the dose-effect relationship of the inhibition of H1975 transplantation tumor growth by the
compounds 51 and 91. The animals were divided in 8 oral administration groups, that is, excipient control group, AZD9291 positive control group (maximum tolerance of 25 mg/kg), and oral administration groups ofcompounds 50 and 91 at 10 mg/kg, 20 mg/kg and 40 mg/kg, respectively (n=7/group). These compounds were dissolved in 30% sulfobutylated beta-cyclodextrin (SBE-β-CD) and 1N HCl (pH 3-4), respectively. Gavage administration at a dose of 10 mg/kg was performed once a day for 22 consecutive days. - 2. Assay Results
- The experiment was ended for the vehicle control group in 16 days after oral administration due to a tumor volume of larger than 2,000 mm3. As shown in
FIG. 3 , oral administration ofcompounds compounds 50 and 91, the tumor substantially disappeared (the T/C values were −97% and −95%, respectively; P<0.001). The weight of each administration group had no significantly loss relative to that before the administration. - Oral administration of compound 50 and
compound 91 dose dependently inhibited the growth of H1975 xenograft tumor. After administration at a high dose (40 mg/kg) of compound 50 andcompound 91 for 22 consecutive days, the tumor disappeared completely. A ¼ maximum tolerable dose (10 mg/kg) can still lead to a shrinkage of tumor (the T/C values were −65% and −73%, respectively). Those two compounds had minor effect on weight in each dose group, with the maximum weight loss of less than 5%, as shown inFIGS. 4-5 and the table below. -
TABLE 6 Anti-tumor activity and effect on body weight of compound 51 and compound 91 in H1975 xenograft tumor model.Tumor inhibition T/C value Weight Administration group N (%) P value change (%) Vehicle control group, po, qd 7 / / 4.2 AZD9291, 25 mg/kg, po, qd 7 −100 <0.001 −7.2 Compound 50, 10 mg/kg, po, qd7 −65 <0.001 0.0 Compound 50, 20 mg/kg, po, qd7 −95 <0.001 −2.0 Compound 50, 40 mg/kg, po, qd 7 −100 <0.001 −4.4 Compound 7 −73 <0.001 1.6 Compound 7 −100 <0.001 1.2 Compound 91, 40 mg/kg, po, qd7 −100 <0.001 −3.5 - Any feature describe in the above embodiments can be of any combination. For the purpose of brevity, all possible combinations of all features described in the above embodiments are not described. However, all such combinations should be considered as being contained within the scope of the present specification as long as such combinations are not contradictory.
- The detailed embodiments described herein are only for the purpose of illustrating the present disclosure, and are not intended to limit the scope of the present disclosure in any way. It would be understood by a person skilled in the art that various changes and modifications can be made to the embodiments described herein without departing from the scope and spirit of the present disclosure. Such changes and modifications are contemplated by the present disclosure, the scope of which should only be defined by the following claims.
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CN115701429B (en) * | 2021-08-02 | 2024-03-12 | 上海和誉生物医药科技有限公司 | 4- (1H-indol-1-yl) pyrimidine-2-amino derivative, and preparation method and application thereof |
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WO2016105525A2 (en) * | 2014-12-23 | 2016-06-30 | Dana-Farber Cancer Institute, Inc. | Novel pyrimidines as egfr inhibitors and methods of treating disorders |
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