US20170334841A1

US20170334841A1 - Tetracycline compounds

Info

Publication number: US20170334841A1
Application number: US15/446,831
Authority: US
Inventors: Yonghong DENG; Louis Plamondon; Cuixiang Sun; Xiao-Yi Xiao; Jingye Zhou; Joyce A. Sutcliffe; Magnus P. Ronn
Original assignee: Tetraphase Pharmaceuticals Inc
Current assignee: Tetraphase Pharmaceuticals Inc
Priority date: 2009-08-28
Filing date: 2017-03-01
Publication date: 2017-11-23
Also published as: HUE037852T2; NO2470500T3; JP2016130243A; DK2470500T3; IN2012DN02502A; EP2470500A2; JP2013503196A; WO2011025982A3; HK1243996A1; IL218277B; CN102596898B; JP6169737B2; CA2772386A1; CN105622496A; EP3275861A1; US20120208788A1; CA2772386C; CN105622496B; PL2470500T3; US9624166B2

Abstract

The present invention is directed to a compound represented by Structural Formula (I):

or a pharmaceutically acceptable salt thereof. The variables for Structural Formula (I) are defined herein. Also described is a pharmaceutical composition comprising the compound of Structural Formula (I) and its therapeutic use.

Description

RELATED APPLICATION

This application is a continuation of U.S. application Ser. No. 13/391,407, filed May 2, 2012, which is the U.S. National Stage of International Application No. PCT/US2010/047035, filed Aug. 27, 2010, which designates the U.S., published in English, which claims the benefit of U.S. Provisional Application No. 61/275,507, filed on Aug. 28, 2009. The entire teachings of the above application are incorporated herein by reference.

BACKGROUND OF THE INVENTION

The tetracyclines are broad spectrum anti microbial agents that are widely used in human and veterinary medicine. The total production of tetracyclines by fermentation or semi synthesis is measured in the thousands of metric tons per year.
The widespread use of tetracyclines for therapeutic purposes has led to the emergence of resistance to these antibiotics, even among highly susceptible bacterial species. Therefore, there is need for new tetracycline analogs with improved antibacterial activities and efficacies against other tetracycline responsive diseases or disorders.

SUMMARY OF THE INVENTION

One embodiment of the present invention is directed to a compound represented by Structural Formula (I):
or a pharmaceutically acceptable salt thereof.
X is selected from —CF₃, —CN, —OCF₃and —OCH₃.
Y is selected from hydrogen, —(C₁-C₇)alkyl, carbocyclyl, —(C₁-C₄)alkylene-N(R²)(R³), —(C₁-C₄)alkylene-N(R^F)—C(O)—[C(R^5a)(R^5b)]_0-4—N(R²)(R³), —CH═N—OR², —C(O)—N(R²)(R⁴), —NO₂, —COOH, —OH, —N═CH—N(R²)(R³), —N(R²)(R³), —N(R^F)—C(O)—[C(R^5a)(R^5b)]_1-4—N(R²)(R³), —N(R^F)—C(O)—N(R²)(R³), —N(R^F)—C(O)—(C₁-C₆)alkyl, —N(R^F)—C(O)-heterocyclyl, —N(R^F)—C(O)-carbocyclyl, —N(R^F)—S(O)_m—(C₁-C₄) alkylene-N(R²)(R³), —N(R^F)—S(O)_m—N(R²)(R⁴), and —N(R^F)—S(O)_m—(C₁-C₄)alkylene-carbocyclyl.
Each R²and R³are independently selected from hydrogen, (C₁-C₇)alkyl, —O—(C₁-C₇)alkyl, —(C₀-C₆) alkylene-carbocyclyl, —(C₀-C₆)alkylene-heterocyclyl, —(C₁-C₆)alkylene-O-carbocyclyl, —(C₁-C₆)alkylene-O-heterocyclyl, —S(O)_m-—(C₁-C₆)alkyl, —(C₀-C₄)alkylene-S(O)_m-carbocyclyl, and —(C₀-C₄)alkylene-S(O)_m-heterocyclyl.
Each R⁴is independently selected from hydrogen, (C₁-C₆)alkyl, —O—(C₁-C₆)alkyl, —(C₀-C₆) alkylene-carbocyclyl and —(C₀-C₆)alkylene-heterocyclyl.
Each R^5aand each R^5bis independently selected from hydrogen, (C₁-C₆)alkyl, carbocyclyl, heterocyclyl, or a naturally occurring amino acid side chain moiety, or
R^5aand R^5btaken together with the carbon atom to which they are bound form a 3-7 membered non-aromatic carbocyclyl or a 4-7 membered non-aromatic heterocyclyl, wherein the heterocyclyl formed by R^5aand R^5boptionally comprises one to two additional heteroatoms independently selected from N, S and O.
R^Fis selected from hydrogen, (C1 C7)alkyl, carbocyclyl or heteroaryl
Alternatively, R²and R³, taken together with the nitrogen atom to which they are bound form a heterocyclyl, wherein the heterocyclyl optionally comprises 1 to 4 additional heteroatoms independently selected from N, S and O.
Each carbocyclyl or heterocyclyl described above (e.g., in the groups represented by Y, R², R³, R⁴, R^5a, R^5b, —NR²R³or R^5aand R^5btaken together) is optionally and independently substituted with one or more substituents independently selected from halo (e.g., chloro or fluoro), —(C₁-C₄)alkyl, —OH, ═O, —O—(C₁-C₄)alkyl, —(C₁-C₄)alkylene-O—(C₁-C₄)alkyl, halo-substituted-(C₁-C₄)alkyl, halo-substituted-O-(C₁-C₄)alkyl, —C(O)—(C₁-C₄)alkyl, —C(O)-(fluoro-substituted-(C₁-C₄)alkyl), —S(O)_m—(C₁-C₄)alkyl, —N(R^G)(R^G) and CN.
The heterocyclyl in —N(R^F)—C(O)-heterocyclyl represented by Y is optionally substituted with carbocyclyl or heterocyclyl in addition to the substituents described above, wherein the carbocyclyl or heterocyclyl is optionally substituted with one or more substituentts independently selected from halo (e.g., chloro or fluoro), (C₁-C₄)alkyl, —OH, ═O, —O—(C₁-C₄)alkyl, —(C₁-C₄)alkylene-O—(C₁-C₄)alkyl, halo-substituted-(C₁-C₄)alkyl, halo-substituted-O-(C₁-C₄)alkyl, —C(O)—(C₁-C₄)alkyl, —C(O)-(fluoro-substituted-(C₁-C₄)alkyl), —S(O)_m—(C₁-C₄)alkyl, —N(R^G)(R^G) and CN.
Each alkyl described above (e.g., in the groups represented by Y, R², R³, R⁴, R^5aor R^5b) is optionally and independently substituted with one or more substituents independently selected from halo (e.g., fluoro or chloro), —(C₁-C₄)alkyl, —OH, —O—(C₁-C₄)alkyl, —(C₁-C₄)alkylene-O—(C₁-C₄)alkyl, fluoro-substituted-(C₁-C₄)alkyl, —S(O)_m—(C₁-C₄)alkyl and -N(RG)(RG).
Each R^Gis hydrogen or (C₁-C₄)alkyl, wherein each alkyl in the group represented by R^Gis optionally and independently substituted with one or more substituents independently selected from —(C₁-C₄)alkyl, (C₃-C₆)cycloalkyl, halo, —OH, —O—(C₁-C₄)alkyl, and —(C₁-C₄)alkylene-O—(C₁-C₄)alkyl.
Each m is 1 or 2.
Another embodiment of the present invention is directed to a pharmaceutical composition comprising a pharmaceutically acceptable carrier or diluent and a compound represented by Structural Formula (I) or a pharmaceutically acceptable salt thereof. The pharmaceutical composition is used in therapy, such as treating an infection (e.g., a bacterial infection) in a subject.
Another embodiment of the present invention is a method of treating an infection (e.g., a bacterial infection) in a subject comprising administering to the subject an effective amount of a compound represented by Structural Formula (I) or a pharmaceutically acceptable salt thereof.
Another embodiment of the present invention is a method of preventing an infection (e.g., a bacterial infection) in a subject comprising administering to the subject an effective amount of a compound represented by Structural Formula (I) or a pharmaceutically acceptable salt thereof.
Another embodiment of the present invention is the use of a compound represented by Structural Formula (I) or a pharmaceutically acceptable salt thereof for the manufacture of a medicament for treating an infection (e.g., a bacterial infection) in a subject.
Another embodiment of the present invention is the use of a compound represented by Structural Formula (I) or a pharmaceutically acceptable salt thereof for the manufacture of a medicament for preventing an infection (e.g., a bacterial infection) in a subject.
Another embodiment of the present invention is the use of a compound represented by Structural Formula (I) or a pharmaceutically acceptable salt thereof in therapy, such as treating or preventing an infection (e.g., a bacterial infection) in a subject.

DETAILED DESCRIPTION OF THE INVENTION

The present invention is directed to a compound represented by Structural Formula (I) or a pharmaceutically acceptable salt thereof. Values and alternative values for the variables in Structural Formula (I) and for each of the embodiments described herein are defined as the following:
X is selected from —CF₃, —CN, —OCF₃and —OCH₃. Alternatively, X is —CF₃. In another alternative, X is —CN. In another alternative, X is —OCF₃. In another alternative, X is —OCH₃.
Y is selected from hydrogen, —(C₁-C₇)alkyl, carbocyclyl, —(C₁-C₄)alkylene-N(R²)(R³), —(C₁-C₄)alkylene-N(R^F)—C(O)—[C(R^5a)(R^5b)]_0-4—N(R²)(R³), —CH═N—OR², —C(O)—N(R²)(R⁴), —NO₂, —COOH, —OH, —N═CH—N(R²)(R³), —N(R²)(R³), —N(R^F)—C(O)—[C(R^5a)(R^5b)]_1-4—N(R²)(R³), —N(R^F)—C(O)—N(R²)(R³), —N(R^F)—C(O)—(C₁-C₆)alkyl, —N(R^F)—C(O)-heterocyclyl, —N(R^F)—C(O)-carbocyclyl, —N(R^F)—S(O)_m—(C₁-C₄)alkylene-N(R²)(R³), —N(R^F)—S(O)_m—N(R²)(R⁴), and —N(R^F)—S(O)_m—(C₁-C₄)alkylene-carbocyclyl. In one embodiment, Y is selected from hydrogen, —(C₁-C₄)alkylene-N(R²)(R³), —CH═N—OR², —C(O)—N(R²)(R⁴), —NO₂, —COOH, —OH, —N═CH—N(R²)(R³), —N(R²)(R³), —N(R^F)—C(O)—[C(R^5a)(R^5b)]_1-4—N(R²)(R³), —N(R^F)—C(O)—(C₁-C₆)alkyl, —N(R^F)—C(O)-heterocyclyl, —N(R^F)—C(O)-carbocyclyl, —N(R^F)—S(O)_m—(C₁-C₄) alkylene-N(R²)(R³), —N(R^F)—S(O)_m—N(R²)(R⁴), and —N(R^F)—S(O)_m—(C₁-C₄)alkylene-carbocyclyl, wherein R^Fin the groups represented by Y is hydrogen or (C₁-C₃)alkyl. Alternatively, Y is selected from hydrogen, —N(R²)(R³), —NH—C(O)—(CH₂)_1-4—N(R²)(R³), —NH—C(O)-heterocyclyl, —NH—C(O)-carbocyclyl, and —NH—S(O)₂—(C₁-C₆)alkyl. In another alternative, Y is selected from hydrogen, —NH₂, —NH—C(O)—CH₂—N(R²)(R³),
—NH—C(O)-phenyl, —NH—C(O)-thienyl and —NH—S(O)₂—(C₁-C₆)alkyl, wherein ring A represents a 4-7 membered saturated heterocyclyl and R^3′ is is hydrogen, (C₁-C₆)alkyl, carbocyclyl or heterocyclyl, wherein the alkyl, carbocyclyl or heterocyclyl are optionally and independently substituted with one or more substituents independently selected from the group described above for Structural Formula (I). In another alternative, Y is selected from —NH—C(O)—CH₂—N(R²)(R³),
and —NH—S(O)₂—(C₁-C₆)alkyl, wherein ring A and R^3′ are as described above; and the alkyl group in —NH—S(O)₂—(C₁-C₆)alkyl is optionally substituted with fluoro. In another alternative, Y is selected from —NH₂, —NH—C(O)—CH₂—N(R²)(R³),
—NH—C(O)-phenyl and —NH—C(O)-thienyl, wherein ring A and R^3′ are as described above; and the phenyl in the —NH—C(O)-phenyl group is optionally substituted with —OCH₃or —N(CH₃)₂. In another alternative, Y is selected from —NH₂, —NH—C(O)—CH₂—N(R²)(R³), and
wherein ring A and R^3′ are as described above.
Each R²and R³are independently selected from hydrogen, (C₁-C₇)alkyl, —O—(C₁-C₇)alkyl, —(C₀-C₆) alkylene-carbocyclyl, —(C₀-C₆)alkylene-heterocyclyl, —(C₁-C₆)alkylene-O-carbocyclyl, —(C₁-C₆)alkylene-O-heterocyclyl, —S(O)_m-—(C₁-C₆)alkyl, —(C₀-C₄)alkylene-S(O)_m-carbocyclyl, and —(C₀-C₄)alkylene-S(O)_m-heterocyclyl.
In one embodiment, each R²is independently selected from hydrogen, and (C₁-C₃)alkyl; and each R³is independently selected from hydrogen, (C₁-C₆)alkyl, —O—(C₁-C₆)alkyl, —(C₀-C₆) alkylene-carbocyclyl, —(C₀-C₆)alkylene-heterocyclyl, —S(O)_m—(C₁-C₆)alkyl, —S(O)_m-carbocyclyl and —S(O)_m-heterocyclyl; or R²and R³, taken together with the nitrogen atom to which they are bound form a heterocyclyl, wherein the heterocyclyl optionally comprises 1 to 4 additional heteroatoms independently selected from N, S and O.
Alternatively, each R²is independently selected from hydrogen and (C₁-C₃)alkyl; and each R³is independently selected from hydrogen, (C₁-C₆)alkyl, and —(C₀-C₆)alkylene-carbocyclyl; or R²and R³taken together with the nitrogen atom to which they are bound form a heterocyclyl, wherein the heterocylyl optionally comprises 1 to 4 additional heteroatoms independently selected from N, S and O.
In another alternative, each R²is independently selected from hydrogen, and (C₁-C₂)alkyl; and each R³is independently selected from hydrogen, (C₁-C₆)alkyl, and —(C₀-C₁) alkylene-cycloalkyl; or R²and R³taken together with the nitrogen atom to which they are bound form a saturated heterocyclyl.
In another alternative, each R²is independently selected from hydrogen and —CH₃; and each R³is independently selected from (C₁-C₆)alkyl, and —(C₀-C₁)alkylene-carbocyclyl; or R²and R³, taken together with the nitrogen atom to which they are bound form a saturated heterocyclyl optionally substituted with fluoro. In another alternative, each R²is independently selected from hydrogen and —CH₃; and each R³is independently selected from (C₁-C₆)alkyl optionally substituted with fluoro or —OCH₃, and —(C₀-C₁)alkylene-carbocyclyl; or R²and R³, taken together with the nitrogen atom to which they are bound form a saturated heterocyclyl optionally substituted with fluoro or —OCH₃.
Each R⁴is independently selected from hydrogen, (C₁-C₆)alkyl, —O—(C₁-C₆)alkyl, —(C₀-C₆) alkylene-carbocyclyl, and —(C₀-C₆)alkylene-heterocyclyl.
Each R^5aand each R^5bis independently selected from hydrogen, (C₁-C₆)alkyl, carbocyclyl, heterocyclyl or a naturally occurring amino acid side chain moiety, or R^5aand R^5btaken together with the carbon atom to which they are bound form a 3-7 membered non-aromatic carbocyclyl or a 4-7 membered non-aromatic heterocyclyl, wherein the heterocyclyl formed by R^5aand R^5boptionally comprises one to two additional heteroatoms independently selected from N, S and O. In one embodiment, R^5aand R^5btaken together with the carbon atom to which they are bound form a 3-7 membered saturated carbocyclyl or a 4-7 membered saturated heterocyclyl, wherein the heterocyclyl formed by R^5aand R^5boptionally comprises one to two additional heteroatoms independently selected from N, S and O. In one embodiment, each R^5aand each R^5bis independently hydrogen, (C₁-C₆)alkyl or a naturally occurring amino acid side chain moiety. In another embodiment, R^5aand R^5bare both hydrogen.
Each carbocyclyl or heterocyclyl described above (e.g., in the groups represented by Y, R³, R⁴, R^5a, R^5b, —NR²R³or R^5aand R^5btaken together) is optionally and independently substituted with one or more substituents independently selected from halo (e.g., chloro or fluoro), —(C₁-C₄)alkyl, —OH, ═O, —O—(C₁-C₄)alkyl, —(C₁-C₄)alkylene-O—(C₁-C₄)alkyl, halo-substituted-(C₁-C₄)alkyl, halo-substituted-O—(C₁-C₄)alkyl, —C(O)—(C₁-C₄)alkyl, —C(O)-(fluoro-substituted-(C₁-C₄)alkyl), —S(O)_m—(C₁-C₄)alkyl, —N(R^G)(R^G) and CN. The heterocyclyl in —N(R^F)—C(O)-heterocyclyl represented by Y is optionally substituted with carbocyclyl or heterocyclyl in addition to the substituents described above, wherein the carbocyclyl or heterocyclyl is optionally substituted with one or more substituents independently selected from chloro, fluoro, (C₁-C₄)alkyl, —OH, —O—(C₁-C₄)alkyl, fluoro-substituted-(C₁-C₄)alkyl, —C(O)—(C₁-C₄)alkyl, —C(O)-(fluoro-substituted-(C₁-C₄)alkyl), and —N(R^G)(R^G).
In one embodiment, each carbocyclyl, or heterocyclyl described above is optionally and independently substituted with one or more substituents independently selected from chloro, fluoro, (C₁-C₄)alkyl, —OH, —O—(C₁-C₄)alkyl, fluoro-substituted-(C₁-C₄)alkyl, —C(O)—(C₁-C₄)alkyl, —C(O)-(fluoro-substituted-(C₁-C₄)alkyl, and —N(R²)(R²).
Each alkyl described above (e.g., in the groups represented by Y, R², R³, R⁴, R^5aor R^5b) is optionally and independently substituted with one or more substituents independently selected from halo (e.g., fluoro or chloro), —(C₁-C₄)alkyl, —OH, —O—(C₁-C₄)alkyl, —(C₁-C₄)alkylene-O—(C₁-C₄)alkyl, fluoro-substituted-(C₁-C₄)alkyl, —S(O)_m—(C₁-C₄)alkyl and —N(R^G)(R^G).
In one embodiment, each alkyl described above is optionally and independently substituted with one or more substituents independently selected from fluoro, chloro, —O—(C₁-C₄)alkyl, and fluoro-substituted-(C₁-C₄)alkyl.
Alternatively, each carbocyclyl (e.g., cycloalkyl or phenyl), or heterocyclyl descrubed above is optionally and independently substituted with one or more substituents independently selected from fluoro, (C₁-C₄)alkyl, —O—(C₁-C₄)alkyl, fluoro-substituted-(C₁-C₄)alkyl, and —N(R^G)(R^G); and each alkyl described above is optionally and independently substituted with one or more substituents independently selected from fluoro, —O—(C₁-C₄)alkyl, and fluoro-substituted-(C₁-C₄)alkyl.
Alternatively, each carbocyclyl described above is (C₃-C₆)cycloalkyl or phenyl; each heterocyclyl described above is independently selected from azetidinyl, morphinyl, piperazinyl, piperidinyl, pyrrolidinyl, azepanyl and octahydrocyclopenta[c]pyrrolyl and thienyl; each of said carbocyclyl, cycloalkyl, heterocyclyl and phenyl is optionally substituted as described in the previous paragraph; and each said alkyl is optionally substituted as described in the previous paragraph.
Each R^Gis hydrogen or (C₁-C₄)alkyl, wherein each alkyl in the group represented by R^Gis optionally and independently substituted with one ore more substituents independently selected from —(C₁-C₄)alkyl, (C₃-C₆)cycloalkyl, halo, —OH, —O—(C₁-C₄)alkyl, and —(C₁-C₄)alkylene-O—(C₁-C₄)alkyl.
Each m is 1 or 2. In one embodiment, m is 2.
In a first alternative embodiment, the compound of the present invention is represented by Structural Formula (I), or a pharmaceutically acceptable salt thereof, wherein:
X is selected from —CF₃, —CN, —OCF₃and —OCH₃; and
Y is selected from hydrogen, —(C₁-C₄)alkylene-N(R²)(R³), —CH═N—OR², —C(O)—N(R²)(R⁴), —NO₂, —COOH, —OH, —N═CH—N(R²)(R³), —N(R²)(R³), —N(R^F)—C(O)—[C(R^5a)(R^5b)]_1-4—N(R²)(R³), —N(R^F)—C(O)—(C₁-C₆)alkyl, —N(R^F)—C(O)-heterocyclyl, —N(R^F)—C(O)-carbocyclyl, —N(R^F)—S(O)_m—(C₁-C₄)alkylene-N(R²)(R³), —N(R^F)—S(O)_m—N(R²)(R⁴), and —N(R^F)—S(O)_m—(C₁-C₄)alkylene-carbocyclyl, wherein R^Fin the groups represented by Y is hydrogen or (C₁-C₃)alkyl.
each R²is independently selected from hydrogen, and (C₁-C₃)alkyl;
each R³is independently selected from hydrogen, (C₁-C₆)alkyl, —O—(C₁-C₆)alkyl, —(C₀-C₆) alkylene-carbocyclyl, —(C₀-C₆)alkylene-heterocyclyl, —S(O)_m—(C₁-C₆)alkyl, —S(O)_m-carbocyclyl, and —S(O)_m-heterocyclyl; or R²and R³, taken together with the nitrogen atom to which they are bound form a heterocyclyl, wherein the heterocylyl optionally comprises 1 to 4 additional heteroatoms independently selected from N, S and O.
each R⁴is independently selected from hydrogen, (C₁-C₆)alkyl, —O—(C₁-C₆)alkyl, —(C₀-C₆) alkylene-carbocyclyl, and —(C₀-C₆)alkylene-heterocyclyl; or
each R^5aand each R^5bis independently selected from hydrogen, (C₁-C₆)alkyl, carbocyclyl or heterocyclyl or a naturally occurring amino acid side chain moiety, or
R^5aand R^5btaken together with the carbon atom to which they are bound form a 3-7 membered non-aromatic carbocyclyl or a 4-7 membered non-aromatic heterocyclyl, wherein the heterocyclyl formed by R^5aand R^5boptionally comprises one to two additional heteroatoms independently selected from N, S and O,
R^Fis hydrogen or (C₁-C₃)alkyl; and
each m is 1 or 2, wherein:
each carbocyclyl or heterocyclyl is optionally and independently substituted with one or more substituents independently selected from chloro, fluoro, (C₁-C₄)alkyl, —OH, —O—(C₁-C₄)alkyl, fluoro-substituted-(C₁-C₄)alkyl, —C(O)—(C₁-C₄)alkyl, —C(O)-(fluoro-substituted-(C₁-C₄)alkyl, and —N(R^G)(R^G);
each alkyl is optionally and independently substituted with one or more substituents independently selected from fluoro, chloro, —O—(C₁-C₄)alkyl, and fluoro-substituted-(C₁-C₄)alkyl; and
each R^Gis hydrogen or (C₁-C₃)alkyl, wherein each alkyl group represented by R^Gis optionally and independently substituted with one or more substituents independently selected from fluoro, chloro, —O—(C₁-C₄)alkyl, and fluoro-substituted-(C₁-C₄)alkyl.
In a second alternative embodiment, the compound of the present invention is represented by Structural Formula (I), or a pharmaceutically acceptable salt thereof, wherein:
X is selected from —CF₃, —CN, —OCF₃and —OCH₃.
Y is selected from hydrogen, —N(R²)(R³), —NH—C(O)—(CH₂)_1-4—N(R²)(R³), —NH—C(O)-heterocyclyl, —NH—C(O)-carbocyclyl, and —NH—S(O)₂—(C₁-C₆)alkyl, wherein:
each R²is independently selected from hydrogen, and (C₁-C₃)alkyl; and
each R³is independently selected from hydrogen, (C₁-C₆)alkyl, and —(C₀-C₆)alkylene-carbocyclyl; or
R²and R³taken together with the nitrogen atom to which they are bound form a heterocyclyl, wherein the heterocyclyl optionally comprises 1 to 4 additional heteroatoms independently selected from N, S and O;
each carbocyclyl or heterocyclyl is optionally and independently substituted with one or more substituents independently selected from fluoro, (C₁-C₄)alkyl, —O—(C₁-C₄)alkyl, fluoro-substituted-(C₁-C₄)alkyl, and -N(RG)(RG); and
each alkyl is optionally and independently substituted with one or more substituents independently selected from fluoro, —O—(C₁-C₄)alkyl, and fluoro-substituted-(C₁-C₄)alkyl. The remainder of the variables are as described aobve in the first alternative embodiment.
In a third alternative embodiment, the compound of the present invention is represented by Structural Formula (I), or a pharmaceutically acceptable salt thereof, wherein:
X is selected from —CF₃, —CN, —OCF₃and —OCH₃.
Y is selected from hydrogen, —NH₂, —NH—C(O)—CH₂—N(R²)(R³),
—NH—C(O)-phenyl, —NH—C(O)-thienyl and —NH—S(O)₂—(C₁-C₆)alkyl, wherein:
each R²is independently selected from hydrogen, and (C₁-C₂)alkyl; and
each R³is independently selected from hydrogen, (C₁-C₆)alkyl, and —(C₀-C₁)alkylene-cycloalkyl; or
R²and R³taken together with the nitrogen atom to which they are bound form a saturated heterocyclyl;
ring A represents a 4-7 membered saturated heterocyclyl;
R^3′ is hydrogen or methyl;
each cycloalkyl, phenyl or heterocyclyl is optionally and independently substituted with one or more substituents independently selected from fluoro, (C₁-C₄)alkyl, —O—(C₁-C₄)alkyl, fluoro-substituted-(C₁-C₄)alkyl, and —N(R^G)(R^G); and
each alkyl is optionally and independently substituted with one or more substituents independently selected from fluoro, —O—(C₁-C₄)alkyl, and fluoro-substituted-(C₁-C₄)alkyl. The remainder of the variables are as described aobve in the second alternative embodiment.
In a fourth alternative embodiment, the compound of Structural Formula (I) is represented by Structural Formula (II), (III), (IV) or (V):
or pharmaceutically acceptable salt thereof, wherein:
Y is selected from —NH—C(O)—CH₂—N(R²)(R³), —NH—C(O)-heterocyclyl, —NH—C(O)-phenyl, and —NH—S(O)₂—(C₁-C₆)alkyl;
each R²is independently hydrogen or a (C₁-C₃)alkyl;
each R³is independently a (C₁-C₆)alkyl or a —(C₀-C₁)alkylene-carbocyclyl; or
R²and R³, taken together with the nitrogen atom to which they are bound form a saturated heterocyclyl. The saturated heterocyclyl (e.g., azetidinyl, morphinyl, piperazinyl, piperidinyl, pyrrolidinyl, azepanyl and octahydrocyclopenta[c]pyrrolyl) is optionally substituted with one or more substituents independently selected from fluoro, (C₁-C₄)alkyl, —O—(C₁-C₄)alkyl, fluoro-substituted-(C₁-C₄)alkyl, and —NN₂, —NH—(C₁-C₃)alkyl. The remainder of the variables are as described above for Structural Formula (I) in the second alternative embodiment.
In a fifth alternative embodiment, for compounds represented by Structural Formulas (II)-(V), Y is:
wherein ring A represents a 4-7 membered saturated heterocyclyl and R^3′ is hydrogen, (C₁-C₆)alkyl, carbocyclyl or heterocyclyl, wherein the alkyl, carbocyclyl or heterocyclyl are optionally substituted with one or more substituents independently selected from the groups described above for Structural Formula (I). The remainder of the variables are as described above in the fourth alternative embodiment. More specifically, R^3′ is hydrogen or (C₁-C₆)alkyl. Even more specifically, R^3′ is hydrogen or methyl. In another more specific embodiment, ring A is selected from the group consisting of azetidinyl, morphinyl, piperazinyl, piperidinyl, pyrrolidinyl, azepanyl and octahydrocyclopenta[c]pyrrolyl, each of which is optionally substituted with one or more substituents independently selected from (C₁-C₃)alkyl, —F, —O—(C₁-C₄)alkyl, and fluoro-substituted-(C₁-C₄)alkyl, such as —CF₃, —CH₂CF₃or —CH₂CHF₂; and the remainder of the variables are as described above for the fifth alternative embodiment. Even more specifically, R^3′ is hydrogen or (C₁-C₆)alkyl (e.g. methyl).
In a sixth alternative embodiment, for compounds represented by Structural Formulas (II)-(V), Y is —NH—C(O)-heteroaryl, and the remainder of the variables are as described in the third alternative embodiment. More specifically, Y is —NH—C(O)-thienyl.
In a seventh alternative embodiment, for compounds represented by Structural Formulas (II)-(V), Y is —NH—C(O)—CH₂—N(R²)(R³), R³is a (C₁-C₆)alkyl or a —(C₀-C₁)alkylene-(C₃-C₆)cycloalkyl; and the remainder of the variables are as described in the fourth alternative embodiment.
In an eighth alternative embodiment, for compounds represented by Structural Formulas (II)-(V):
Y is —NH—C(O)—CH₂—N(R²)(R³);
R²is hydrogen or a (C₁-C₃)alkyl;
R³is a (C₁-C₆)alkyl or a —(C₀-C₁)alkylene-(C₃-C₆)cycloalkyl; or
R²and R³, taken together with the nitrogen atom to which they are bound form a saturated heterocyclyl optionally substituted with one or more substituents independently selected from the group consisting of (C₁-C₃)alkyl, —F, —O—(C₁-C₄)alkyl, and fluoro-substituted-(C₁-C₄)alkyl, such as —CF₃, —CH₂CF₃or —CH₂CHF₂.
Examples of the heterocyclyl include azetidinyl, piperidinyl, pyrrolidinyl, azepanyl and octahydrocyclopenta[c]pyrrolyl, each of the azetidinyl, piperidinyl, pyrrolidinyl, azepanyl and octahydrocyclopenta[c]pyrrolyl, each of which is optionally substituted with one or more substituents independently selected from the group consisting of (C₁-C₃)alkyl, —F, —O—(C₁-C₄)alkyl, and fluoro-substituted-(C₁-C₄)alkyl, such as —CF₃, —CH₂CF₃or —CH₂CHF₂.
In a ninth alternative embodiment, the compounds of the present invention are represented by Structural Formula (II):
wherein:
Y is selected from —NH—C(O)—CH₂—N(R²)(R³),
and —NH—S(O)₂—(C₁-C₆)alkyl, wherein the —NH—S(O)₂—(C₁-C₆)alkyl in the group represented by Y is optionally substituted with fluoro;
each R²is independently selected from hydrogen and —CH₃; and
each R³is independently selected from (C₁-C₆)alkyl, and —(C₀-C₁)alkylene-carbocyclyl; or
R²and R³, taken together with the nitrogen atom to which they are bound form a saturated heterocyclyl optionally substituted with fluoro;
ring A represents a 4-7 membered saturated heterocyclyl;
R^3′ is hydrogen or methyl;
each carbocyclyl or heterocyclyl is optionally and independently substituted with one or more substituents independently selected from fluoro, (C₁-C₄)alkyl, —O—(C₁-C₄)alkyl, fluoro-substituted-(C₁-C₄)alkyl, and —N(R^G)(R^G);
each alkyl is optionally and independently substituted with one or more substituents independently selected from fluoro, —O—(C₁-C₄)alkyl, and fluoro-substituted-(C₁-C₄)alkyl; and
each R^Gis hydrogen or (C₁-C₃)alkyl, wherein each alkyl group represented by R^Gis optionally and independently substituted with one or more substituents independently selected from fluoro, chloro, —O—(C₁-C₄)alkyl, and fluoro-substituted-(C₁-C₄)alkyl.
Alternatively, for compounds of Structural Formula (II), the heterocyclyl represented by ring A or —NR²R³is independently selected from the group consisting of azetidinyl, morphinyl, piperazinyl, piperidinyl, pyrrolidinyl, azepanyl and octahydrocyclopenta[c]pyrrolyl, each of which is optionally substituted with fluoro. The remainder of the variables are as described above for the ninth alternative embodiment.
Alternatively, for compounds of Structural Formula (II), the carbocyclyl in the group represented by R³is a (C₃-C₆)cycloalkyl and the remainder of the variables are as described in the ninth alternative embodiment.
In a tenth alternative embodiment, the compounds of the present invention are represented by Structural Formula (III):
wherein:
Y is selected from —NH₂, —NH—C(O)—CH₂—N(R²)(R³),
—NH—C(O)-phenyl, and —NH—C(O)-thienyl, wherein:
ring A represents a 4-7 membered saturated heterocyclyl;
R^3′ is hydrogen or methyl;
the phenyl in the group represented by Y is optionally substituted with —OCH₃or —N(CH₃)₂;
each R²is independently selected from hydrogen and —CH₃; and
each R³is independently selected from (C₁-C₆)alkyl, and —(C₀-C₁)alkylene-carbocyclyl, wherein the (C₁-C₆)alkyl is optionally substituted with fluoro or —OCH₃; or
R²and R³, taken together with the nitrogen atom to which they are bound form a saturated heterocyclyl optionally substituted with fluoro or —OCH₃;
each carbocyclyl or heterocyclyl is optionally and independently substituted with one or more substituents independently selected from fluoro, (C₁-C₄)alkyl, —O—(C₁-C₄)alkyl, fluoro-substituted-(C₁-C₄)alkyl, and —N(R^G)(R^G);
each alkyl is optionally and independently substituted with one or more substituents independently selected from fluoro, —O—(C₁-C₄)alkyl, and fluoro-substituted-(C₁-C₄)alkyl; and
each R^Gis hydrogen or (C₁-C₃)alkyl, wherein each alkyl group represented by R^Gis optionally and independently substituted with one or more substituents independently selected from fluoro, chloro, —O—(C₁-C₄)alkyl, and fluoro-substituted-(C₁-C₄)alkyl.
Alternatively, for compounds of Structural Formula (III) described in the tenth alternative embodiment, the heterocyclyl represented by ring A or —NR²R³is independently selected from the group consisting of azetidinyl, piperazinyl, morpholinyl piperidinyl, pyrrolidinyl, azepanyl and octahydrocyclopenta[c]pyrrolyl, each of which is optionally substituted with fluoro or —OCH₃; and the remainder of the variables are as described in the tenth alternative embodiment.
In another embodiment, for compounds of Structural Formula (III) described in the tenth alternative embodiment, the carbocyclyl group represented by R³is a (C₃-C₆)cycloalkyl, and the remainder of the variables are as described in the tenth alternative embodiment.
In a eleventh alternative embodiment, the compounds of the present invention are represented by Structural Formula (IV):
wherein:
Y is selected from —NH₂, —NH—C(O)—CH₂—N(R²)(R³), and
wherein ring A represents a 4-7 membered saturated heterocyclyl;
R^3′ is hydrogen or methyl;
each R²is independently selected from hydrogen and —CH₃; and
each R³is independently selected from (C₁-C₆) alkyl, and —(C₀-C₁)alkylene-carbocyclyl, wherein the (C₁-C₆) alkyl is optionally substituted with fluoro or —OCH₃; or
R²and R³, taken together with the nitrogen atom to which they are bound form a saturated heterocyclyl optionally substituted with fluoro or —OCH₃;
each carbocyclyl or heterocyclyl is optionally and independently substituted with one or more substituents independently selected from fluoro, (C₁-C₄)alkyl, —O—(C₁-C₄)alkyl, fluoro-substituted-(C₁-C₄)alkyl, and —N(R^G)(R^G);
each alkyl is optionally and independently substituted with one or more substituents independently selected from fluoro, —O—(C₁-C₄)alkyl, and fluoro-substituted-(C₁-C₄)alkyl; and
each R^Gis hydrogen or (C₁-C₃)alkyl, wherein each alkyl group represented by R^Gis optionally and independently substituted with one or more substituents independently selected from fluoro, chloro, —O—(C₁-C₄)alkyl, and fluoro-substituted-(C₁-C₄)alkyl.
In one embodiment, for compounds of Structural Formula (IV) described in the eleventh alternative embodiment, the heterocyclyl represented by ring A or —NR²R³is independently selected from the group consisting of azetidinyl, piperidinyl, pyrrolidinyl, azepanyl and octahydrocyclopenta[c]pyrrolyl, each of which is optionally substituted with fluoro or —OCH₃. The remainder of the variables are as described above for the eleventh alternative embodiment.
In another embodiment, for compounds of Structural Formula (IV) described in the eleventh alternative embodiment, the carbocyclyl in the group represented by R³is a (C₃-C₆)cycloalkyl and the remainder of the variables are as described in the eleventh alternative embodiment.
In a twelfth alternative embodiment, the compounds of the present invention is represented by Structural Formula (V):
wherein:
Y is selected from hydrogen, —NH₂, —NH—C(O)—CH₂—N(R²)(R³), and
wherein ring A represents a 4-7 membered saturated heterocyclyl;
R^3′ is hydrogen or methyl;
each R²is independently selected from hydrogen and —CH₃; and
each R³is independently selected from (C₁-C₆) alkyl, and —(C₀-C₁)alkylene-carbocyclyl, wherein the (C₁-C₆) alkyl is optionally substituted with fluoro or —OCH₃; or
R²and R³, taken together with the nitrogen atom to which they are bound form a saturated heterocyclyl optionally substituted with fluoro or —OCH₃;
each carbocyclyl or heterocyclyl is optionally and independently substituted with one or more substituents independently selected from fluoro, (C₁-C₄)alkyl, —O—(C₁-C₄)alkyl, fluoro-substituted-(C₁-C₄)alkyl, and —N(R^G)(R^G);
each alkyl is optionally and independently substituted with one or more substituents independently selected from fluoro, —O—(C₁-C₄)alkyl, and fluoro-substituted-(C₁-C₄)alkyl;
each R^Gis hydrogen or (C₁-C₃)alkyl, wherein each alkyl group represented by R^Gis optionally and independently substituted with one or more substituents independently selected from fluoro, chloro, —O—(C₁-C₄)alkyl, and fluoro-substituted-(C₁-C₄)alkyl.
In one embodiment, for compounds of Structural Formula (V) described in the twelfth alternative embodiment, the saturated heterocyclyl represented by ring A or —NR²R³is independently is selected from the group consisting of azetidinyl, piperidinyl, pyrrolidinyl, azepanyl and octahydrocyclopenta[c]pyrrolyl. The remainder of the variables are as described above for the twelfth alternative embodiment.
In another embodiment, for compounds of Structural Formula (V) described in the twelfth alternative embodiment, the carbocyclyl in the group represented by R³is a (C₃-C₆)cycloalkyl and the remainder of the variables are as described in the twelfth alternative embodiment.
Exemplary compounds represented by Structural Formula (I) are shown in Tables 1-4 below:

TABLE 1

Exemplary Compounds of Formula II
(X═OCH3) Table 1.

	Compound #	Y

	101

	101

	102

	103

	104

	105

	106

	107

	108

	109

	110

	111

	112

	113

	114

	115

	116

	117

	118

	119

	120

	121

	122

	123

	124

	125

	126

	127

	128

	129

	130

	131

	132

	133

	134

	135

	136

	137

	138

	139

	140

	141

	142

	143

	144

	145

	146

	147

	148

	149

	150

	151

	152

	153

	154

	155

	156

	157

	158

	159

	160

	161

	162

	163

	164

	165

	166

	167

	168

	169

	170

	171

	172

	173

	174

	175

	176

	177

	178

	179

	180

	181

	182

	183

	184

	185

	186

	187

	188

	189

	190

	191

	192

	193

	194

	195

	196

	197

	198

	199

	200

	201

	202

	203

	204

	205

	206

TABLE 2

Exemplary Compounds of Formula III (X═OCF₃).

	Compound #	Y

	207

	208

	209

	210

	211

	212

	213

	214

	215

	216

	217

	218

	219

	220

	221

	222

	223

	224

	225

	226

	227

	228

	229

	230

	231

	232

	233

	234

	235

	236

	237

	238

	239

	240

	241

	242

	243

	244

	245

	246

	247

	248

	249

	250

	251

	252

	253

	254

	255

	256

	257

	258

	259

	260

	261

	262

	263

	264

	265

	266

	267

	268

TABLE 3

Exemplary Compounds of Formula IV (X═CF₃).

	Compound #	Y

	269

	270

	271

	272

	273

	274

	275

	276

	277

	278

	279

	280

	281

	282

	283

	284

	285

	286

	287

	288

	289

	290

	291

	292

	293

	294

	295

	296

	297

	298

	299

	300

	301

	302

	303

	304

	305

	306

	307

	308

	309

	310

	311

TABLE 4

Exemplary Compounds of Formula V (X═CN).

	Compound #	Y

	312

	313

	314

	315

	316

	317

	318

	319

	320

	321

	322

	323

	324

	325

	326

	327

	328

	329

	330

	331

	332

	333

	334

	335

Definitions

“Alkyl” means a saturated aliphatic branched or straight-chain monovalent hydrocarbon radical having the specified number of carbon atoms. Thus, “(C₁-C₆) alkyl” means a radical having from 1-6 carbon atoms in a linear or branched arrangement. “(C₁-C₆)alkyl” includes methyl, ethyl, propyl, butyl, pentyl and hexyl.
“Alkylene” means a saturated aliphatic straight-chain divalent hydrocarbon radical having the specified number of carbon atoms. Thus, “(C₁-C₆) alkylene” means a divalent saturated aliphatic radical having from 1-6 carbon atoms in a linear arrangement, e.g., —[(CH₂)_n], where n is an integer from 1 to 6. “(C₁-C₆)alkylene” includes methylene, ethylene, propylene, butylene, pentylene and hexylene.
“Aryl” or “aromatic means an aromatic monocyclic or polycyclic (e.g. bicyclic or tricyclic) carbocyclic ring system. In one embodiment, “aryl” is a 6-12 membered monocylic or bicyclic systems. Aryl systems include, but not limited to, phenyl, naphthalenyl, fluorenyl, indenyl, azulenyl, and anthracenyl.
“Carbocyclyl” means a cyclic group with only ring carbon atoms. “Carbocyclyl” includes 3-12 membered saturated or unsaturated aliphatic cyclic hydrocarbon ring or 6-12 membered aromatic ring. A carbocyclyl moiety can be monocyclic, fused bicyclic, bridged bicyclic, spiro bicyclic, or polycyclic.
Monocyclic carbocyclyls are saturated or unsaturated aliphatic cyclic hydrocarbon rings or aromatic hydrocarbon rings having the specified number of carbon atoms. Monocyclic carbocyclyls include cycloalkyl, cycloalkenyl, cycloalkynyl and phenyl.
A fused bicyclic carbocyclyl has two rings which have two adjacent ring atoms in common. The first ring is a monocyclic carbocyclyl and the second ring is a monocylic carbocyclyl or a moncyclic heterocyclyl.
A spiro bicyclic carbocyclyl has two rings which have only one ring atom in common. The first ring is a monocyclic carbocyclyl and the second ring is a monocylic carbocyclyl or a moncyclic heterocyclyl.
A bridged bicyclic carbocyclyl has two rings which have three or more adjacent ring atoms in common. The first ring is a monocyclic carbocyclyl and the second ring is a monocylic carbocyclyl or a moncyclic heterocyclyl.
Polycyclic carbocyclyls have more than two rings (e.g., three rings resulting in a tricyclic ring system) and adjacent rings have at least one ring atom in common. The first ring is a monocyclic carbocyclyl and the remainder of the ring structures are monocyclic carbocyclyls or monocyclic heterocyclyls. Polycyclic ring systems include fused, bridged and spiro ring systems. A fused polycyclic ring system has at least two rings that have two adjacent ring atoms in common. A spiro polycyclic ring system has at least two rings that have only one ring atom in common. A bridged polycyclic ring system has at least two rings that have three or more adjacent ring atoms in common.
“Cycloalkyl” means a saturated aliphatic cyclic hydrocarbon ring. Thus, “C₃-C₇cycloalkyl” means a hydrocarbon radical of a (3-7 membered) saturated aliphatic cyclic hydrocarbon ring. A C₃-C₇cycloalkyl includes, but is not limited to cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl and cycloheptyl.
“Cycloalkene” means an aliphatic cyclic hydrocarbon ring having one or more double bonds in the ring.
“Cycloalkyne” means an aliphatic cyclic hydrocarbon ring having one or more triple bonds in the ring.
“Heterocyclyl” means a cyclic 4-12 membered saturated or unsaturated aliphatic ring containing 1, 2, 3, 4 or 5 heteroatoms independently selected from N, O or S or a heteroaromatic ring. When one heteroatom is S, it can be optionally mono- or di-oxygenated (i.e. —S(O)— or —S(O)₂—). The heterocyclyl can be monocyclic, fused bicyclic, bridged bicyclic, spiro bicyclic or polycyclic.
“Saturated heterocyclyl” means an aliphatic heterocyclyl group without any degree of unsaturation (i.e., no double bond or triple bond). It can be monocyclic, fused bicyclic, bridged bicyclic, spiro bicyclic or polycyclic.
Examples of monocyclic saturated heterocyclyls include, but are not limited to, azetidine, pyrrolidine, piperidine, piperazine, azepane, hexahydropyrimidine, tetrahydrofuran, tetrahydropyran, morpholine, thiomorpholine, thiomorpholine 1,1-dioxide, tetrahydro-2H-1,2-thiazine, tetrahydro-2H-1,2-thiazine 1,1-dioxide, isothiazolidine, isothiazolidine 1,1-dioxide. Examples of heteroaromatic rings include, but are not limited to, furan, thiophene, pyrrole, imidazole, pyrazole, oxazole, isoxazole, thiazole, isothiazole, 1,2,3-triazole, 1,2,4-triazole, 1,3,4-oxadiazole, 1,2,5-thiadiazole, 1,2,5-thiadiazole 1-oxide, 1,2,5-thiadiazole 1,1-dioxide, 1,3,4-thiadiazole, pyridine, pyridine-N-oxide, pyrazine, pyrimidine, pyridazine, 1,2,4-triazine, 1,3,5-triazine, and tetrazole.
A fused bicyclic heterocyclyl has two rings which have two adjacent ring atoms in common. The first ring is a monocyclic heterocyclyl and the second ring is a monocyclic carbocycle (such as a cycloalkyl or phenyl) or a monocyclic heterocyclyl. For example, the second ring is a (C₃-C₆)cycloalkyl, such as cyclopropyl, cyclobutyl, cyclopentyl and cyclohexyl. Alternatively, the second ring is phenyl. Examples of fused bicyclic heterocyclyls include, but are not limited to, octahydrocyclopenta[c]pyrrolyl, indoline, isoindoline, 2,3-dihydro-1H-benzo[d]imidazole, 2,3-dihydrobenzo[d]oxazole, 2,3-dihydrobenzo[d]thiazole, octahydrobenzo[d]oxazole, octahydro-1H-benzo[d]imidazole, octahydrobenzo[d]thiazole, octahydrocyclopenta[c]pyrrole, 3-azabicyclo[3.1.0]hexane, 3-azabicyclo[3.2.0]heptane, indolizine, indole, isoindole, indazole, benzimidazole, benzthiazole, purine, quinoline, isoquinoline, cinnoline, phthalazine, quinazoline, quinoxaline, 1,8-naphthyridine, and pteridine.
A Spiro bicyclic heterocyclyl has two rings which have only one ring atom in common. The first ring is a monocyclic heterocyclyl and the second ring is a monocyclic carbocycle (such as a cycloalkyl or phenyl) or a monocyclic heterocyclyl. For example, the second ring is a (C₃-C₆)cycloalkyl. Alternatively, the second ring is phenyl. Example of spiro bicyclic heterocyclyl includes, but are not limited to, azaspiro[4.4]nonane, 7-azaspiro[4.4]nonane, azasprio[4.5]decane, 8-azaspiro[4.5]decane, azaspiro[5.5]undecane, 3-azaspiro[5.5]undecane and 3,9-diazaspiro[5.5]undecane.
A bridged bicyclic heterocyclyl has two rings which have three or more adjacent ring atoms in common. The first ring is a monocyclic heterocyclyl and the other ring is a monocyclic carbocycle (such as a cycloalkyl or phenyl) or a monocyclic heterocyclyl. Examples of bridged bicyclic heterocyclyls include, but are not limited to, azabicyclo[3.3.1]nonane, 3-azabicyclo[3.3.1]nonane, azabicyclo[3.2.1]octane, 3-azabicyclo[3.2.1]octane, 6-azabicyclo[3.2.1]octane and azabicyclo[2.2.2]octane, 2-azabicyclo[2.2.2]octane.
Polycyclic heterocyclyls have more than two rings, one of which is a heterocyclyl (e.g., three rings resulting in a tricyclic ring system) and adjacent rings having at least one ring atom in common. Polycyclic ring systems include fused, bridged and spiro ring systems. A fused polycyclic ring system has at least two rings that have two adjacent ring atoms in common. A spiro polycyclic ring system has at least two rings that have only one ring atom in common. A bridged polycyclic ring system has at least two rings that have three or more adjacent ring atoms in common.
Unless otherwise specified, a heterocyclyl or a carbocyclyl can be optionally substituted with one or more (such as two, three, four and five) substituents. Unless otherwise specified, suitable substituents include (C₁-C₄)alkyl, halo, —OH, (C₁-C₄)alkoxy, (C₁-C₄)alkylthio, (C₁-C₄)alkylsulfinyl, (C₁-C₄)alkylsulfonyl, (C₁-C₄)alkoxy(C₁-C₄)alkyl, —N(R³)(R⁴), —CN, halo(C₁-C₄)alkyl, and halo(C₁-C₄)alkoxy. Oxo (C═O) is also a suitable substituent and examples of heterocyclic rings with an oxo substituent include, but are not limited to, thiomorpholine 1-oxide, thiomorpholine 1,1-dioxide, tetrahydro-2H-1,2-thiazine 1,1-dioxide, and isothiazolidine 1,1-dioxide, pyrrolidin-2-one, piperidin-2-one, piperazin-2-one, and morpholin-2-one. When the heterocycle contains a ring nitrogen atom that is not connected to an adjacent ring atom by a double bond, substituents at such ring nitrogen atoms are also contemplated. Unless otherwise specified, suitable substituents for a ring nitrogen atoms include alkyl (such as -Me, or -Et) and acyl (e.g., —CHO, CH₃CO—, and CH₃CH₂CO—). In one embodiment, the substituents are independently selected from the group consisting of —Cl, —F, (C₁-C₄)alkyl, —OH, —O—(C₁-C₄)alkyl, fluoro-substituted-(C₁-C₄)alkyl, —C(O)—(C₁-C₄alkyl), —C(O)-(fluoro-substituted-C₁-C₄alkyl), and —N(R²)(R²).
“Heteroaryl” or “heteroaromatic ring” means a 5-12 membered monovalent heteroaromatic monocyclic or bicylic ring radical. A herteroaryl contains 1, 2, 3 or 4 heteroatoms independently selected from N, O, and S. Heteroaryls include, but are not limited to pyrrole, imidazole, pyrazole, oxazole, isoxazole, thiazole, isothiazole, 1,2,3-triazole, 1,2,4-triazole, 1,3,4-oxadiazole, 1,2,5-thiadiazole, 1,2,5-thiadiazole 1-oxide, 1,2,5-thiadiazole 1,1-dioxide, 1,3,4-thiadiazole, pyridine, pyrazine, pyrimidine, pyridazine, 1,2,4-triazine, 1,3,5-triazine, and tetrazole. Bicyclic heteroaryl rings include, but are not limited to, bicyclo[4.4.0] and bicyclo[4.3.0] fused ring systems such as indolizine, indole, isoindole, indazole, benzimidazole, benzthiazole, purine, quinoline, isoquinoline, cinnoline, phthalazine, quinazoline, quinoxaline, 1,8-naphthyridine, and pteridine.
“Hetero” refers to the replacement of at least one carbon atom member in a ring system with at least one heteroatom selected from N, S, and O. “Hetero” also refers to the replacement of at least one carbon atom member in a acyclic system. A hetero ring system or a hetero acyclic system may have 1, 2, 3 or 4 carbon atom members replaced by a heteroatom.
“Halogen” used herein refers to fluorine, chlorine, bromine, or iodine.
“Alkoxy” means an alkyl radical attached through an oxygen linking atom. “(C₁-C₆)-alkoxy” includes methoxy, ethoxy, propoxy, butoxy, pentoxy and hexoxy.
Haloalkyl and halocycloalkyl include mono, poly, and perhaloalkyl groups where each halogen is independently selected from fluorine, chlorine, and bromine. “Halogen” and “halo” are interchangeably used herein and each refers to fluorine, chlorine, bromine, or iodine.
“Fluoro” means —F.
As used herein, fluoro-substituted-(C₁-C₄)alkyl means a (C₁-C₄)alkyl substituted with one or more —F groups. Examples of fluoro-substituted-(C₁-C₄)alkyl include, but are not limited to, —CF₃, —CH₂CF₃, —CH₂CF₂H, —CH₂CH₂F and —CH₂CH₂CF₃.
As used herein, “amino” include —NH₂, monoalkylamino and dialkylamino.
“Naturally occurring amino acid side chain moiety” refers to any amino acid side chain moiety present in a natural amino acid.
Unless otherwise specified, an alkyl group can be optionally substituted with one or more (such as two, three, four and five) substituents. Unless otherwise specified, the substituents are independently selected from the group consisting of halogen (—Cl, —F or —Br), alkyl, amino, —OH, alkoxy, haloalkyl, halocycloalkyl, cycloalkl, aryl and heteroaryl. In one embodiment, the substituents are independently selected from the group consisting of —Cl, —F, (C₁-C₄)alkyl, —OH, —O—(C₁-C₄)alkyl, fluoro-substituted-(C₁-C₄)alkyl, —C(O)—(C₁-C₄alkyl), —C(O)-(fluoro-substituted-C₁-C₄alkyl), and —N(R²)(R²). In another embodiment, the substituents are independently selected from the group consisting of —F, —Cl, —O—(C₁-C₄)alkyl and fluoro-substituted-(C₁-C₄)alkyl.
Another embodiment of the present invention is a pharmaceutical composition comprising one or more pharmaceutically acceptable carrier and/or diluent and a compound disclosed herein or a pharmaceutically acceptable salt thereof.
“Pharmaceutically acceptable carrier” and “pharmaceutically acceptable diluent” means non-therapeutic components that are of sufficient purity and quality for use in the formulation of a composition of the invention that, when appropriately administered to an animal or human, typically do not produce an adverse reaction, and that are used as a vehicle for a drug substance (i.e. a compound of the present invention).
Pharmaceutically acceptable salts of the compounds of the present invention are also included. For example, an acid salt of a compound of the present invention containing an amine or other basic group can be obtained by reacting the compound with a suitable organic or inorganic acid, resulting in pharmaceutically acceptable anionic salt forms. Examples of anionic salts include the acetate, benzenesulfonate, benzoate, bicarbonate, bitartrate, bromide, calcium edetate, camsylate, carbonate, chloride, citrate, dihydrochloride, edetate, edisylate, estolate, esylate, fumarate, glyceptate, gluconate, glutamate, glycollylarsanilate, hexylresorcinate, hydrobromide, hydrochloride, hydroxynaphthoate, iodide, isethionate, lactate, lactobionate, malate, maleate, mandelate, mesylate, methylsulfate, mucate, napsylate, nitrate, pamoate, pantothenate, phosphate/diphosphate, polygalacturonate, salicylate, stearate, subacetate, succinate, sulfate, tannate, tartrate, teoclate, tosylate, and triethiodide salts.
Salts of the compounds of the present invention containing a carboxylic acid or other acidic functional group can be prepared by reacting with a suitable base. Such a pharmaceutically acceptable salt may be made with a base which affords a pharmaceutically acceptable cation, which includes alkali metal salts (especially sodium and potassium), alkaline earth metal salts (especially calcium and magnesium), aluminum salts and ammonium salts, as well as salts made from physiologically acceptable organic bases such as trimethylamine, triethylamine, morpholine, pyridine, piperidine, picoline, dicyclohexylamine, N,N′-dibenzylethylenediamine, 2-hydroxyethylamine, bis-(2-hydroxyethyl)amine, tri-(2-hydroxyethyl)amine, procaine, dibenzylpiperidine, dehydroabietylamine, N,N′-bisdehydroabietylamine, glucamine, N-methylglucamine, collidine, quinine, quinoline, and basic amino acids such as lysine and arginine.
The invention also includes various isomers and mixtures thereof. Certain of the compounds of the present invention may exist in various stereoisomeric forms. Stereoisomers are compounds which differ only in their spatial arrangement. Enantiomers are pairs of stereoisomers whose mirror images are not superimposable, most commonly because they contain an asymmetrically substituted carbon atom that acts as a chiral center. “Enantiomer” means one of a pair of molecules that are minor images of each other and are not superimposable. Diastereomers are stereoisomers that are not related as mirror images, most commonly because they contain two or more asymmetrically substituted carbon atoms. “R” and “S” represent the configuration of substituents around one or more chiral carbon atoms. When a chiral center is not defined as R or S, either a pure enantiomer or a mixture of both configurations is present.
“Racemate” or “racemic mixture” means a compound of equimolar quantities of two enantiomers, wherein such mixtures exhibit no optical activity; i.e., they do not rotate the plane of polarized light.
The compounds of the invention may be prepared as individual isomers by either isomer-specific synthesis or resolved from an isomeric mixture. Conventional resolution techniques include forming the salt of a free base of each isomer of an isomeric pair using an optically active acid (followed by fractional crystallization and regeneration of the free base), forming the salt of the acid form of each isomer of an isomeric pair using an optically active amine (followed by fractional crystallization and regeneration of the free acid), forming an ester or amide of each of the isomers of an isomeric pair using an optically pure acid, amine or alcohol (followed by chromatographic separation and removal of the chiral auxiliary), or resolving an isomeric mixture of either a starting material or a final product using various well known chromatographic methods.
When the stereochemistry of a disclosed compound is named or depicted by structure, the named or depicted stereoisomer is at least 60%, 70%, 80%, 90%, 99% or 99.9% by weight pure relative to the other stereoisomers. When a single enantiomer is named or depicted by structure, the depicted or named enantiomer is at least 60%, 70%, 80%, 90%, 99% or 99.9% by weight optically pure. Percent optical purity by weight is the ratio of the weight of the enantiomer that is present divided by the combined weight of the enantiomer that is present and the weight of its optical isomer.
The present invention also provides a method of treating or preventing a subject with a tetracycline-responsive disease or disorder comprising administering to the subject an effective amount of a compound of the present invention or a pharmaceutically acceptable salt thereof.
“Tetracycline-responsive disease or disorder” refers to a disease or disorder that can be treated, prevented, or otherwise ameliorated by the administration of a tetracycline compound of the present invention. Tetracycline-responsive disease or disorder includes infections, cancer, inflammatory disorders, autoimmune disease, arteriosclerosis, corneal ulceration, emphysema, arthritis, osteoporosis, osteoarthritis, multiple sclerosis, osteosarcoma, osteomyelitis, bronchiectasis, chronic pulmonary obstructive disease, skin and eye diseases, periodontitis, osteoporosis, rheumatoid arthritis, ulcerative colitis, prostatitis, tumor growth and invasion, metastasis, diabetes, diabetic proteinuria, panbronchiolitis; aortic or vascular aneurysms, skin tissue wounds, dry eye, bone, cartilage degradation, malaria, senescence, diabetes, vascular stroke, neurodegenerative disorders, cardiac disease, juvenile diabetes, acute and chronic bronchitis, sinusitis, and respiratory infections, including the common cold; Wegener's granulomatosis; neutrophilic dermatoses and other inflammatory diseases such as dermatitis herpetiformis, leukocytoclastic vasculitis, bullous lupus erythematosus, pustular psoriasis, erythema elevatum diutinum; vitiligo; discoid lupus erythematosus; pyoderma gangrenosum; pustular psoriasis; blepharitis, or meibomianitis; Alzheimer's disease; degenerative maculopathy; acute and chronic gastroenteritis and colitis; acute and chronic cystitis and urethritis; acute and chronic dermatitis; acute and chronic conjunctivitis; acute and chronic serositis; uremic pericarditis; acute and chronic cholecystis; cystic fibrosis, acute and chronic vaginitis; acute and chronic uveitis; drug reactions; insect bites; burns and sunburn, bone mass disorder, acute lung injury, chronic lung disorders, ischemia, stroke or ischemic stroke, skin wound, aortic or vascular aneurysm, diabetic retinopathy, hemorrhagic stroke, angiogenesis, and other states for which tetracycline compounds have been found to be active (see, for example, U.S. Pat. Nos. 5,789,395; 5,834,450; 6,277,061 and 5,532,227, each of which is expressly incorporated herein by reference).
In addition, a method to treat any disease or disease state that could benefit from modulating the expression and/or function of nitric oxide, metalloproteases, proinflammatory mediators and cytokines, reactive oxygen species, components of the immune response, including chemotaxis, lymphocyte transformation, delayed hypersensitivity, antibody production, phagocytosis, and oxidative metabolism of phagocytes. A method to treat any disease or disease state that could benefit from modulating the expression and/or function of C-reactive protein, signaling pathways (e.g., FAK signaling pathway), and/or augment the expression of COX-2 and PGE2 production is covered. A method to treat any disease or disease state that could benefit from inhibition of neovascularization is covered.
Compounds of the invention can be used to prevent or treat important mammalian and veterinary diseases such as diarrhea, urinary tract infections, infections of skin and skin structure, ear, nose and throat infections, wound infection, mastitis and the like. In addition, methods for treating neoplasms using tetracycline compounds of the invention are also included (van der Bozert et al., Cancer Res., 48: 6686-6690 (1988)).
Infections that can be treated using compounds of the invention or a pharmaceutically acceptable salt thereof include, but are not limited to, skin infections, GI infections, urinary tract infections, genito-urinary infections, respiratory tract infections, sinuses infections, middle ear infections, systemic infections, cholera, influenza, bronchitis, acne, malaria, sexually transmitted disease including syphilis and gonorrhea, Legionnaires' disease, Lyme disease, Rocky Mountain spotted fever, Q fever, typhus, bubonic plague, gas gangrene, hospital acquired infections, leptospirosis, whooping cough, anthrax and infections caused by the agents responsible for lymphogranuloma venereum, inclusion conjunctivitis, or psittacosis. Infections can be bacterial, fungal, parasitic and viral infections (including those which are resistant to other tetracycline compounds).
In one embodiment, the infection can be caused bacteria. In another embodiment, the infection is caused by a Gram-positive bacteria. In a specific aspect of this embodiment, the infection is caused by a Gram-positive bacterium selected from Staphylococcus spp., Streptococcus spp., Propionibacterium spp., Enterococcus spp., Bacillus spp., Corynebacterium spp., Nocardia spp., Clostridium spp., Actinobacteria spp., and Listeria spp.
In another embodiment, the infection is caused by a Gram-negative bacterium. In one aspect of this embodiment, the infection is caused by a proteobacteria (e.g., Betaproteobacteria and Gammaproteobacteria), including Escherichia coli, Salmonella, Shigella, other Enterobacteriaceae, Pseudomonas, Moraxella, Helicobacter, Stenotrophomonas, Bdellovibrio, acetic acid bacteria, Legionella or alpha-proteobacteria such as Wolbachia. In another aspect, the infection is caused by a Gram-negative bacteria selected from cyanobacteria, spirochaetes, green sulfur or green non-sulfur bacteria. In a specific aspect of this embodiment, the infection is caused by a Gram-negative bacteria selected from Enterobactericeae (e.g., E. coli, Klebsiella pneumonia including those containing extended-spectrum β-lactamases and/or carbapenemases), Bacteroidaceae (e.g., Bacteroides fragilis), Vibrionaceae (Vibrio cholerae), Pasteurellae (e.g., Haemophilus influenza), Pseudomonadaceae (e.g., Pseudomonas aeruginosa), Neisseriaceae (e.g. Neisseria meningitidis), Rickettsiae, Moraxellaceae (e.g., Moraxella catarrhalis), any species of Proteeae, Acinetobacter spp., Helicobacter spp., and Campylobacter spp.
In a particular embodiment, the infection is caused by Gram-negative bacterium selected from the group consisting of Enterobactericeae (e.g., E. coli, Klebsiella pneumoniae), Pseudomonas, and Acinetobacter spp.
In another embodiment, the infection is caused by an organism selected from the group consisting of K. pneumoniae, Salmonella, E. hirae, A. baumanii, M. catarrhalis, H. influenzae, P. aeruginosa, E. faecium, E. coli, S. aureus, and E. faecalis.
In another embodiment, the infection is caused by an organism selected from the group consisting of rickettsiae, chlamydiae, Legionella spp. and Mycoplasma spp.
In another embodiment, the infection is caused by an organism resistant to tetracycline or any member of first and second generation of tetracycline antibiotics (e.g., doxycycline or minocycline).
In another embodiment, the infection is caused by an organism resistant to methicillin.
In another embodiment, the infection is caused by an organism resistant to vancomycin.
In another embodiment, the infection is caused by an organism resistant to a quinolone or fluoroquinolone.
In another embodiment, the infection is caused by an organism resistant to tigecycline.
In another embodiment, the infection is caused by a multidrug-resistant pathogen (having intermediate or full resistance to any two or more antibiotics). In another embodiment the infection is a Bacillus anthracis infection. “Bacillus anthracis infection” includes any state, diseases, or disorders caused or which result from exposure or alleged exposure to Bacillus anthracis or another member of the Bacillus cereus group of bacteria. In another embodiment, the infection is caused by Bacillus anthracis (anthrax), Yersinia pestis (plague), or Francisella tularensis (tularemia).
In yet another embodiment, the infection can be caused by more than one organism described above. Examples of such infections include, but are not limited to, intra-abdominal infections (often a mixture of a gram-negative species like E. coli and an anaerobe like B. fragilis), diabetic foot (various combinations of Streptococcus, Serratia, Staphylococcus and Enterococcus spp., anaerobes (S. E. Dowd, et al., PloS one 2008; 3:e3326) and respiratory disease (especially in patients that have chronic infections like cystic fibrosis—e.g., S. aureus plus P. aeruginosa or H. influenza, atypical pathogens), wounds and abscesses (various gram-negative and gram-positive bacteria, notably MSSA/MRSA, coagulase-negative staphylococci, enterococci, Acinetobacter, P. aeruginosa, E. coli, B. fragilis), and bloodstream infections (13% were polymicrobial (H. Wisplinghoff, et al., Clin. Infect. Dis. 2004; 39:311-317)).
In a further embodiment, the tetracycline responsive disease or disorder is not a bacterial infection. In another embodiment, the tetracycline compounds of the invention are essentially non-antibacterial. For example, non-antibacterial compounds of the invention may have MIC values greater than about 4 μg/ml (as measured by assays known in the art and/or the assay given in Example 14. In another embodiment, the tetracycline compounds of the invention have both antibacterial and non-antibacterial effects.
Tetracycline responsive disease or disorder also includes diseases or disorders associated with inflammatory process associated states (IPAS). The term “inflammatory process associated state” includes states in which inflammation or inflammatory factors (e.g., matrix metalloproteinases (MMPs), nitric oxide (NO), TNF, interleukins, plasma proteins, cellular defense systems, cytokines, lipid metabolites, proteases, toxic radicals, adhesion molecules, etc.) are involved or are present in an area in aberrant amounts, e.g., in amounts which may be advantageous to alter, e.g., to benefit the subject. The inflammatory process is the response of living tissue to damage. The cause of inflammation may be due to physical damage, chemical substances, micro-organisms, tissue necrosis, cancer or other agents. Acute inflammation is short-lasting, lasting only a few days. If it is longer lasting however, then it may be referred to as chronic inflammation.
IPASs include inflammatory disorders. Inflammatory disorders are generally characterized by heat, redness, swelling, pain and loss of function. Examples of causes of inflammatory disorders include, but are not limited to, microbial infections (e.g., bacterial and fungal infections), physical agents (e.g., burns, radiation, and trauma), chemical agents (e.g., toxins and caustic substances), tissue necrosis and various types of immunologic reactions.
Examples of inflammatory disorders can be treated using the compounds of the invention or a pharmaceutically acceptable salt thereof include, but are not limited to, osteoarthritis, rheumatoid arthritis, acute and chronic infections (bacterial and fungal, including diphtheria and pertussis); acute and chronic bronchitis, sinusitis, and upper respiratory infections, including the common cold; acute and chronic gastroenteritis and colitis; inflammatory bowel disorder; acute and chronic cystitis and urethritis; vasculitis; sepsis; nephritis; pancreatitis; hepatitis; lupus; inflammatory skin disorders including, for example, eczema, dermatitis, psoriasis, pyoderma gangrenosum, acne rosacea, and acute and chronic dermatitis; acute and chronic conjunctivitis; acute and chronic serositis (pericarditis, peritonitis, synovitis, pleuritis and tendinitis); uremic pericarditis; acute and chronic cholecystis; acute and chronic vaginitis; acute and chronic uveitis; drug reactions; insect bites; burns (thermal, chemical, and electrical); and sunburn.
IPASs also include matrix metalloproteinase associated states (MMPAS). MMPAS include states characterized by aberrant amounts of MMPs or MMP activity.
Examples of matrix metalloproteinase associated states (“MMPAS's”) can be treated using compounds of the invention or a pharmaceutically acceptable salt thereof, include, but are not limited to, arteriosclerosis, corneal ulceration, emphysema, osteoarthritis, multiple sclerosis (Liedtke et al., Ann. Neurol. 1998, 44: 35-46; Chandler et al., J. Neuroimmunol. 1997, 72: 155-71), osteosarcoma, osteomyelitis, bronchiectasis, chronic pulmonary obstructive disease, skin and eye diseases, periodontitis, osteoporosis, rheumatoid arthritis, ulcerative colitis, inflammatory disorders, tumor growth and invasion (Stetler-Stevenson et al., Annu. Rev. Cell Biol. 1993, 9: 541-73; Tryggvason et al., Biochim. Biophys. Acta 1987, 907: 191-217; Li et al., Mol. Carcillog. 1998, 22: 84-89)), metastasis, acute lung injury, stroke, ischemia, diabetes, aortic or vascular aneurysms, skin tissue wounds, dry eye, bone and cartilage degradation (Greenwald et al., Bone 1998,22: 33-38; Ryan et al., Curr. Op. Rheumatol. 1996, 8: 238-247). Other MMPAS include those described in U.S. Pat. Nos. 5,459,135; 5,321,017; 5,308,839; 5,258,371; 4,935,412; 4,704,383, 4,666,897, and RE 34,656, incorporated herein by reference in their entirety.
In a further embodiment, the IPAS includes disorders described in U.S. Pat. Nos. 5,929,055; and 5,532,227, incorporated herein by reference in their entirety.
Tetracycline responsive disease or disorder also includes diseases or disorders associated with NO associated states. The term “NO associated states” includes states which involve or are associated with nitric oxide (NO) or inducible nitric oxide synthase (iNOS). NO associated state includes states which are characterized by aberrant amounts of NO and/or iNOS. Preferably, the NO associated state can be treated by administering tetracycline compounds of the invention. The disorders, diseases and states described in U.S. Pat. Nos. 6,231,894; 6,015,804; 5,919,774; and 5,789,395 are also included as NO associated states. The entire contents of each of these patents are hereby incorporated herein by reference.
Examples of diseases or disorders associated with NO associated states can be treated using the compounds of the present invention or a pharmaceutically acceptable salt thereof include, but are not limited to, malaria, senescence, diabetes, vascular stroke, neurodegenerative disorders (Alzheimer's disease and Huntington's disease), cardiac disease (reperfusion-associated injury following infarction), juvenile diabetes, inflammatory disorders, osteoarthritis, rheumatoid arthritis, acute, recurrent and chronic infections (bacterial, viral and fungal); acute and chronic bronchitis, sinusitis, and respiratory infections, including the common cold; acute and chronic gastroenteritis and colitis; acute and chronic cystitis and urethritis; acute and chronic dermatitis; acute and chronic conjunctivitis; acute and chronic serositis (pericarditis, peritonitis, synovitis, pleuritis and tendonitis); uremic pericarditis; acute and chronic cholecystis; cystic fibrosis, acute and chronic vaginitis; acute and chronic uveitis; drug reactions; insect bites; burns (thermal, chemical, and electrical); and sunburn.
In another embodiment, the tetracycline responsive disease or disorder is cancer. Examples of cancers that can be treated using the compounds of the invention or a pharmaceutically acceptable salt thereof include all solid tumors, i.e., carcinomas e.g., adenocarcinomas, and sarcomas. Adenocarcinomas are carcinomas derived from glandular tissue or in which the tumor cells form recognizable glandular structures. Sarcomas broadly include tumors whose cells are embedded in a fibrillar or homogeneous substance like embryonic connective tissue. Examples of carcinomas which may be treated using the methods of the invention include, but are not limited to, carcinomas of the prostate, breast, ovary, testis, lung, colon, and breast. The methods of the invention are not limited to the treatment of these tumor types, but extend to any solid tumor derived from any organ system. Examples of treatable cancers include, but are not limited to, colon cancer, bladder cancer, breast cancer, melanoma, ovarian carcinoma, prostate carcinoma, lung cancer, and a variety of other cancers as well. The methods of the invention also cause the inhibition of cancer growth in adenocarcinomas, such as, for example, those of the prostate, breast, kidney, ovary, testes, and colon. In one embodiment, the cancers treated by methods of the invention include those described in U.S. Pat. Nos. 6,100,248; 5,843,925; 5,837,696; or 5,668,122, incorporated herein by reference in their entirety.
Alternatively, the tetracycline compounds may be useful for preventing or reducing the likelihood of cancer recurrence, for example, to treat residual cancer following surgical resection or radiation therapy. The tetracycline compounds useful according to the invention are especially advantageous as they are substantially non-toxic compared to other cancer treatments.
In a further embodiment, the compounds of the invention are administered in combination with standard cancer therapy, such as, but not limited to, chemotherapy.
Examples of tetracycline responsive states can be treated using the compounds of the invention or a pharmaceutically acceptable salt thereof also include neurological disorders which include both neuropsychiatric and neurodegenerative disorders, but are not limited to, such as Alzheimer's disease, dementias related to Alzheimer's disease (such as Pick's disease), Parkinson's and other Lewy diffuse body diseases, senile dementia, Huntington's disease, Gilles de la Tourette's syndrome, multiple sclerosis, amyotrophic lateral sclerosis (ALS), progressive supranuclear palsy, epilepsy, and Creutzfeldt-Jakob disease; autonomic function disorders such as hypertension and sleep disorders, and neuropsychiatric disorders, such as depression, schizophrenia, schizoaffective disorder, Korsakoffs psychosis, mania, anxiety disorders, or phobic disorders; learning or memory disorders, e. g., amnesia or age-related memory loss, attention deficit disorder, dysthymic disorder, major depressive disorder, mania, obsessive-compulsive disorder, psychoactive substance use disorders, anxiety, phobias, panic disorder, as well as bipolar affective disorder, e.g., severe bipolar affective (mood) disorder (BP-1), bipolar affective neurological disorders, e.g., migraine and obesity.
Further neurological disorders include, for example, those listed in the American Psychiatric Association's Diagnostic and Statistical manual of Mental Disorders (DSM), the most current version of which is incorporated herein by reference in its entirety.
In another embodiment, the tetracycline responsive disease or disorder is diabetes. Diabetes that can be treated using the compounds of the invention or a pharmaceutically acceptable salt thereof include, but are not limited to, juvenile diabetes, diabetes mellitus, diabetes type I, or diabetes type II. In a further embodiment, protein glycosylation is not affected by the administration of the tetracycline compounds of the invention. In another embodiment, the tetracycline compound of the invention is administered in combination with standard diabetic therapies, such as, but not limited to insulin therapy.
In another embodiment, the tetracycline responsive disease or disorder is a bone mass disorder. Bone mass disorders that can be treated using the compounds of the invention or a pharmaceutically acceptable salt thereof include disorders where a subjects bones are disorders and states where the formation, repair or remodeling of bone is advantageous. For examples bone mass disorders include osteoporosis (e.g., a decrease in bone strength and density), bone fractures, bone formation associated with surgical procedures (e.g., facial reconstruction), osteogenesis imperfecta (brittle bone disease), hypophosphatasia, Paget's disease, fibrous dysplasia, osteopetrosis, myeloma bone disease, and the depletion of calcium in bone, such as that which is related to primary hyperparathyroidism. Bone mass disorders include all states in which the formation, repair or remodeling of bone is advantageous to the subject as well as all other disorders associated with the bones or skeletal system of a subject which can be treated with the tetracycline compounds of the invention. In a further embodiment, the bone mass disorders include those described in U.S. Pat. Nos. 5,459,135; 5,231,017; 5,998,390; 5,770,588; RE 34,656; 5,308,839; 4,925,833; 3,304,227; and 4,666,897, each of which is hereby incorporated herein by reference in its entirety.
In another embodiment, the tetracycline responsive disease or disorder is acute lung injury. Acute lung injuries that can be treated using the compounds of the invention or a pharmaceutically acceptable salt thereof include adult respiratory distress syndrome (ARDS), post-pump syndrome (PPS), and trauma. Trauma includes any injury to living tissue caused by an extrinsic agent or event. Examples of trauma include, but are not limited to, crush injuries, contact with a hard surface, or cutting or other damage to the lungs.
The tetracycline responsive disease or disorders of the invention also include chronic lung disorders. Examples of chronic lung disorders that can be treated using the compounds of the invention or a pharmaceutically acceptable salt thereof include, but are not limited, to asthma, cystic fibrosis, chronic obstructive pulmonary disease (COPD), and emphysema. In a further embodiment, the acute and/or chronic lung disorders that can be treated using the compounds of the invention or a pharmaceutically acceptable salt thereof include those described in U.S. Pat. No. 5,977,091; 6,043,231; 5,523,297; and 5,773,430, each of which is hereby incorporated herein by reference in its entirety.
In yet another embodiment, the tetracycline responsive disease or disorder is ischemia, stroke, or ischemic stroke.
In a further embodiment, the tetracycline compounds of the invention or a pharmaceutically acceptable salt thereof can be used to treat such disorders as described above and in U.S. Pat. Nos. 6,231,894; 5,773,430; 5,919,775 and 5,789,395, incorporated herein by reference.
In still a further embodiment, the tetracycline compounds of the invention or a pharmaceutically acceptable salt thereof can be used to treat pain, for example, inflammatory, nociceptive or neuropathic pain. The pain can be either acute or chronic.
In another embodiment, the tetracycline responsive disease or disorder is a skin wound. The invention also provides a method for improving the healing response of the epithelialized tissue (e.g., skin, mucosae) to acute traumatic injury (e.g., cut, burn, scrape, etc.). The method includes using a tetracycline compound of the invention or a pharmaceutically acceptable salt thereof to improve the capacity of the epithelialized tissue to heal acute wounds. The method may increase the rate of collagen accumulation of the healing tissue. The method may also decrease the proteolytic activity in the epithelialized tissue by decreasing the collagenolytic and/or gellatinolytic activity of MMPs. In a further embodiment, the tetracycline compound of the invention or a pharmaceutically acceptable salt thereof is administered to the surface of the skin (e. g., topically). In a further embodiment, the tetracycline compound of the invention or a pharmaceutically acceptable salt thereof is used to treat a skin wound, and other such disorders as described in, for example, U.S. Pat. Nos. 5,827,840; 4,704,383; 4,935,412; 5,258,371; 5,308,839, 5,459,135; 5,532,227; and 6,015,804; each of which is incorporated herein by reference in its entirety.
In yet another embodiment, the tetracycline responsive disease or disorder is an aortic or vascular aneurysm in vascular tissue of a subject (e.g., a subject having or at risk of having an aortic or vascular aneurysm, etc.). The tetracycline compound or a pharmaceutically acceptable salt thereof may be effective to reduce the size of the vascular aneurysm or it may be administered to the subject prior to the onset of the vascular aneurysm such that the aneurysm is prevented. In one embodiment, the vascular tissue is an artery, e.g., the aorta, e.g., the abdominal aorta. In a further embodiment, the tetracycline compounds of the invention are used to treat disorders described in U.S. Pat. Nos. 6,043,225 and 5,834,449, incorporated herein by reference in their entirety.
The compounds of the invention or a pharmaceutically acceptable salt thereof can be used alone or in combination with one or more therapeutic agent in the methods of the invention disclosed herein.
The language “in combination with” another therapeutic agent or treatment includes co-administration of the tetracycline compound and with the other therapeutic agent or treatment as either a single combination dosage form or as multiple, separate dosage forms, administration of the tetracycline compound first, followed by the other therapeutic agent or treatment and administration of the other therapeutic agent or treatment first, followed by the tetracycline compound.
The other therapeutic agent may be any agent that is known in the art to treat, prevent, or reduce the symptoms of a tetracycline-responsive disease or disorder. The choice of additional therapeutic agent(s) is based upon the particular tetracycline-responsive disease or disorder being treated. Such choice is within the knowledge of a treating physician. Furthermore, the other therapeutic agent may be any agent of benefit to the patient when administered in combination with the administration of a tetracycline compound.
As used herein, the term “subject” means a mammal in need of treatment or prevention, e.g., companion animals (e.g., dogs, cats, and the like), farm animals (e.g., cows, pigs, horses, sheep, goats and the like) and laboratory animals (e.g., rats, mice, guinea pigs and the like). Typically, the subject is a human in need of the specified treatment.
As used herein, the term “treating” or ‘treatment” refers to obtaining desired pharmacological and/or physiological effect. The effect can include achieving, partially or substantially, one or more of the following results: partially or totally reducing the extent of the disease, disorder or syndrome; ameliorating or improving a clinical symptom or indicator associated with the disorder; delaying, inhibiting or decreasing the likelihood of the progression of the disease, disorder or syndrome.
As used herein, “preventing” or “prevention” refers to reducing the likelihood of the onset or development of disease, disorder or syndrome.
“Effective amount” means that amount of active compound agent that elicits the desired biological response in a subject. In one embodiment, the effective amount of a compound of the invention is from about 0.01 mg/kg/day to about 1000 mg/kg/day, from about 0.1 mg/kg/day to about 100 mg/kg/day, or from about 0.5 mg/kg/day to about 50 mg/kg/day.
The invention further includes the process for making the composition comprising mixing one or more of the present compounds and an optional pharmaceutically acceptable carrier; and includes those compositions resulting from such a process, which process includes conventional pharmaceutical techniques.
The compositions of the invention include ocular, oral, nasal, transdermal, topical with or without occlusion, intravenous (both bolus and infusion), inhalable, and injection (intraperitoneally, subcutaneously, intramuscularly, intratumorally, or parenterally) formulations. The composition may be in a dosage unit such as a tablet, pill, capsule, powder, granule, liposome, ion exchange resin, sterile ocular solution, or ocular delivery device (such as a contact lens and the like facilitating immediate release, timed release, or sustained release), parenteral solution or suspension, metered aerosol or liquid spray, drop, ampoule, auto-injector device, or suppository; for administration ocularly, orally, intranasally, sublingually, parenterally, or rectally, or by inhalation or insufflation.
Compositions of the invention suitable for oral administration include solid forms such as pills, tablets, caplets, capsules (each including immediate release, timed release, and sustained release formulations), granules and powders; and, liquid forms such as solutions, syrups, elixirs, emulsions, and suspensions. Forms useful for ocular administration include sterile solutions or ocular delivery devices. Forms useful for parenteral administration include sterile solutions, emulsions, and suspensions.
The compositions of the invention may be administered in a form suitable for once-weekly or once-monthly administration. For example, an insoluble salt of the active compound may be adapted to provide a depot preparation for intramuscular injection (e.g., a decanoate salt) or to provide a solution for ophthalmic administration.
The dosage form containing the composition of the invention contains an effective amount of the active ingredient necessary to provide a therapeutic effect. The composition may contain from about 5,000 mg to about 0.5 mg (preferably, from about 1,000 mg to about 0.5 mg) of a compound of the invention or salt form thereof and may be constituted into any form suitable for the selected mode of administration. The composition may be administered about 1 to about 5 times per day. Daily administration or post-periodic dosing may be employed.
For oral administration, the composition is preferably in the form of a tablet or capsule containing, e.g., 500 to 0.5 milligrams of the active compound. Dosages will vary depending on factors associated with the particular patient being treated (e.g., age, weight, diet, and time of administration), the severity of the condition being treated, the compound being employed, the mode of administration, and the strength of the preparation.
The oral composition is preferably formulated as a homogeneous composition, wherein the active ingredient is dispersed evenly throughout the mixture, which may be readily subdivided into dosage units containing equal amounts of a compound of the invention. Preferably, the compositions are prepared by mixing a compound of the invention (or pharmaceutically acceptable salt thereof) with one or more optionally present pharmaceutical carriers (such as a starch, sugar, diluent, granulating agent, lubricant, glidant, binding agent, and disintegrating agent), one or more optionally present inert pharmaceutical excipients (such as water, glycols, oils, alcohols, flavoring agents, preservatives, coloring agents, and syrup), one or more optionally present conventional tableting ingredients (such as corn starch, lactose, sucrose, sorbitol, talc, stearic acid, magnesium stearate, dicalcium phosphate, and any of a variety of gums), and an optional diluent (such as water).
Binder agents include starch, gelatin, natural sugars (e.g., glucose and beta-lactose), corn sweeteners and natural and synthetic gums (e.g., acacia and tragacanth). Disintegrating agents include starch, methyl cellulose, agar, and bentonite.
Tablets and capsules represent an advantageous oral dosage unit form. Tablets may be sugarcoated or filmcoated using standard techniques. Tablets may also be coated or otherwise compounded to provide a prolonged, control-release therapeutic effect. The dosage form may comprise an inner dosage and an outer dosage component, wherein the outer component is in the form of an envelope over the inner component. The two components may further be separated by a layer which resists disintegration in the stomach (such as an enteric layer) and permits the inner component to pass intact into the duodenum or a layer which delays or sustains release. A variety of enteric and non-enteric layer or coating materials (such as polymeric acids, shellacs, acetyl alcohol, and cellulose acetate or combinations thereof) may be used.
Compounds of the invention may also be administered via a slow release composition; wherein the composition includes a compound of the invention and a biodegradable slow release carrier (e.g., a polymeric carrier) or a pharmaceutically acceptable non-biodegradable slow release carrier (e.g., an ion exchange carrier).
Biodegradable and non-biodegradable slow release carriers are well known in the art. Biodegradable carriers are used to form particles or matrices which retain an active agent(s) and which slowly degrade/dissolve in a suitable environment (e.g., aqueous, acidic, basic and the like) to release the agent. Such particles degrade/dissolve in body fluids to release the active compound(s) therein. The particles are preferably nanoparticles or nanoemulsions (e.g., in the range of about 1 to 500 nm in diameter, preferably about 50-200 nm in diameter, and most preferably about 100 nm in diameter). In a process for preparing a slow release composition, a slow release carrier and a compound of the invention are first dissolved or dispersed in an organic solvent. The resulting mixture is added into an aqueous solution containing an optional surface-active agent(s) to produce an emulsion. The organic solvent is then evaporated from the emulsion to provide a colloidal suspension of particles containing the slow release carrier and the compound of the invention.
The compound disclosed herein may be incorporated for administration orally or by injection in a liquid form such as aqueous solutions, suitably flavored syrups, aqueous or oil suspensions, flavored emulsions with edible oils such as cottonseed oil, sesame oil, coconut oil or peanut oil and the like, or in elixirs or similar pharmaceutical vehicles. Suitable dispersing or suspending agents for aqueous suspensions, include synthetic and natural gums such as tragacanth, acacia, alginate, dextran, sodium carboxymethylcellulose, methylcellulose, polyvinyl-pyrrolidone, and gelatin. The liquid forms in suitably flavored suspending or dispersing agents may also include synthetic and natural gums. For parenteral administration, sterile suspensions and solutions are desired. Isotonic preparations, which generally contain suitable preservatives, are employed when intravenous administration is desired.
The compounds may be administered parenterally via injection. A parenteral formulation may consist of the active ingredient dissolved in or mixed with an appropriate inert liquid carrier. Acceptable liquid carriers usually comprise aqueous solvents and other optional ingredients for aiding solubility or preservation. Such aqueous solvents include sterile water, Ringer's solution, or an isotonic aqueous saline solution. Other optional ingredients include vegetable oils (such as peanut oil, cottonseed oil, and sesame oil), and organic solvents (such as solketal, glycerol, and formyl). A sterile, non-volatile oil may be employed as a solvent or suspending agent. The parenteral formulation is prepared by dissolving or suspending the active ingredient in the liquid carrier whereby the final dosage unit contains from 0.005 to 10% by weight of the active ingredient. Other additives include preservatives, isotonizers, solubilizers, stabilizers, and pain-soothing agents. Injectable suspensions may also be prepared, in which case appropriate liquid carriers, suspending agents and the like may be employed.
Compounds of the invention may be administered intranasally using a suitable intranasal vehicle.
In another embodiment, the compounds of this invention may be administered directly to the lungs by inhalation.
Compounds of the invention may also be administered topically or enhanced by using a suitable topical transdermal vehicle or a transdermal patch.
For ocular administration, the composition is preferably in the form of an ophthalmic composition. The ophthalmic compositions are preferably formulated as eye-drop formulations and filled in appropriate containers to facilitate administration to the eye, for example a dropper fitted with a suitable pipette. Preferably, the compositions are sterile and aqueous based, using purified water. In addition to the compound of the invention, an ophthalmic composition may contain one or more of:
a) a surfactant such as a polyoxyethylene fatty acid ester; b) a thickening agents such as cellulose, cellulose derivatives, carboxyvinyl polymers, polyvinyl polymers, and polyvinylpyrrolidones, typically at a concentration n the range of about 0.05 to about 5.0% (wt/vol); c) (as an alternative to or in addition to storing the composition in a container containing nitrogen and optionally including a free oxygen absorber such as Fe), an anti-oxidant such as butylated hydroxyanisol, ascorbic acid, sodium thiosulfate, or butylated hydroxytoluene at a concentration of about 0.00005 to about 0.1% (wt/vol); d) ethanol at a concentration of about 0.01 to 0.5% (wt/vol); and e) other excipients such as an isotonic agent, buffer, preservative, and/or pH-controlling agent. The pH of the ophthalmic composition is desirably within the range of 4 to 8.
In certain embodiments, the composition of this invention includes one or more additional agents. The other therapeutic agent may be ay agent that is capable of treating, preventing or reducing the symptoms of a tetracycline-responsive disease or disorder. Alternatively, the other therapeutic agent may be any agent of benefit to a patient when administered in combination with the tetracycline compound in this invention.
While this invention has been particularly shown and described with references to example embodiments thereof, it will be understood by those skilled in the art that various changes in form and details may be made therein without departing from the scope of the invention encompassed by the appended claims.

EXEMPLIFICATION

The following abbreviations are used in throughout the application.
Ac acetyl
AIBN 2,2′-azobis(2-methylpropionitrile)
aq aqueous
Bn benzyl
Boc tert-butoxycarbonyl
Bu butyl
Cb zbenzyloxycarbonyl
Cy tricyclohexylphosphine
dba dibenzylideneacetone
DIBAL H diisobutylaluminum hydride
DIEA N,N-diisopropylethylamine
DMAP 4-(dimethylamino)pyridine
DME 1,2-dimethoxyethane
DMF N,N-dimethylformamide
DMPU 1,3-dimethyl -3,4-5,6-tetrahydro-2(1H)-pyrimidone
DMSO dimethyl sulfoxide
EDC N-(3-dimethylaminopropyl)-N′-ethylcarbodiimide
ESI electrospray ionization
E tethyl
EtOAc ethyl acetate
HPLC high performance liquid chromatography
HOBt 1-hydroxybenzotriazole
i iso
IBX 2-iodoxybenzoic acid
LDA lithium diisopropylamide
LHMDS lithium bis(trimethylsilyl)amide
LTMP lithium 2,2,6,6-tetramethylpiperidide
MeOH methanol
Ms methanesulfonyl
MS mass spectrometry
MTBE methyl tent-butyl ether
MW molecular weight
NBS N-bromosuccinimide
NCS N-chlorosuccinimide
NMR nuclear magnetic resonance spectrometry
Ph phenyl
Pr propyl
s secondary
t tertiary
TMEDA N,N,N′N′-tetramethylethylenediamine
TBS tert-butyldimethylsilyl
TEA triethylamine
Tf trifluoromathanesulfonyl
TFA trifluoroacetic acid
TFAA trifluoroacetic anhydride
THF tetrahydrofuran
TLC thin layer chromatography
Ts para-toluenesulfonyl
TsOH para-toluenesulfonic acid
Xantphos 4,5-bis(diphenylphosphino)-9,9-dimethylxanthene

Example 1

Synthesis of Compound 100. Compound 100 was prepared according to Scheme 1, below.
3,6-dimethoxy-2-methylbenzoic acid (1-2). nBuLi (8.6 mL, 13.7 mmol, 5.0 equiv) was added to a THF solution (5 mL) of tetramethylpiperidine (2.3 mL, 13.7 mmol, 5.0 equiv) at 0° C. The reaction was stirred at 0° C. for 30 min. To the resulting solution was added a THF solution of 2,5-dimothoxybenzoic acid (1-1, 500 mg, 2.75 mmol) at 0° C. The reaction was stirred at 0° C. for 2.5 h. MeI (1.0 mL, 16.5 mmol, 6.0 equiv) was added to the reaction mixture dropwise. The reaction was allowed to warm to 25° C. over 1 h and stirred at 25° C. for 1 h. NaOH (6 N, 20 mL) was added. The resulting mixture was extracted with t-butylmethyl ether (20 mL×2). The aqueous layer was acidified with HCl (6 N) to pH 1 and extracted with EtOAc (20 mL×4). The combined EtOAc extracts were dried (Na₂SO₄) and concentrated to give 350 mg of crude product 1-2.
Phenyl 3,6-dimethoxy-2-methylbenzoate (1-3). Oxalyl chloride (0.61 mL, 7.1 mmol, 4.0 equiv) was added to CH₂Cl₂solution (15 mL, anhydrous) of crude 1-2 (350 mg, 1.79 mmol). DMF (0.1 mL) was added to the resulting mixture. The reaction was stirred at 25° C. for 1 h and concentrated. The resulting solid was re-dissolved in 15 mL of anhydrous CH₂Cl₂. Phenol (337 mg, 3.58 mmol, 2.0 equiv), DMAP (437 mg, 3.58 mmol, 2.0 equiv), and triethylamine (1.20 mL, 8.95 mmol, 5.0 equiv) were added to the reaction mixture. The reaction was stirred at 25° C. for 12 h and concentrated. EtOAc and H₂O were added to the residue. The organic layer was washed with NaOH (1 N), H2O, and brine, dried (Na₂SO₄), and concentrated. Flash chromatography on silica gel (20:1 hexanes/EtOAc) yielded 291 mg of compound 1-3 (39% for 2 steps).
Phenyl 6-hydroxy-3-methoxy-2-methylbenzoate (1-4). BBr₃(1.9 mL, 1.0 M, 1.9 mmol, 0.9 equiv) was added to a CH₂Cl₂solution (10 mL) of 1-3 (582 mg, 2.14 mmol) at −78° C. The reaction was stirred from −78° C. to 25° C. for 1.5 h, quenched with saturated NaHCO₃and concentrated. EtOAc and H₂O were added to the reaction mixture. The aqueous layer was extracted with EtOAc. The combined EtOAc extracts were dried (Na₂SO₄) and concentrated to yield 480 mg of crude 1-4.
Phenyl 6-(tert-butoxycarbonyloxy)-3-methoxy-2-methylbenzoate (1-5). Boc₂O (487 mg, 2.23 mmol, 1.2 equiv) and DMAP (20 mg, 0.16 mmol, 0.1 equiv) were added to a CH₂Cl₂solution of crude 1-4 (480 mg). The reaction was stirred at 25° C. for 1.5 h and concentrated. Flash chromatography on silica gel (15:1 hexanes/EtOAc) yielded 530 mg of compound 1-5 (80% for 2 steps).
(4aS,11aR,12aS,13S)-3-(benzyloxy)-4a-(tert-butyldimethylsilyloxy)-13-(dimethylamino)-5-hydroxy-10-methoxy-4,6-dioxo-4,4a,6,11,11a,12,12a,13-octahydrotetraceno[2,3-dfisoxazol-7-yl tert-butyl carbonate (1-7). A THF solution (8 mL) of 1-5 (520 mg, 1.45 mmol, 2.5 equiv) was added to a THF solution (8 mL) of LDA (6.50 mL, 10% wt, 4.36 mmol, 7.5 equiv) and TMEDA (1.0 mL, 7.3 mmol, 12.5 equiv) at −78° C. The reaction was stirred at −78° C. for 5 min. A THF solution (8 mL) of enone 1-6 (280 mg, 0.58 mmol, 1.0 equiv) was added to the reaction mixture dropwise. The enone 1-6 was prepared as described in PCT publication WO 2005/112945 and WO 2007/117639. The reaction was stirred from −78° C. to 25° C. for 1 h, quenched with saturated NH₄Cl, and extracted with EtOAc. The combined EtOAc extracts were dried (Na₂SO₄) and concentrated to yield the crude product. Preparative reverse phase HPLC purification on a Waters Autopurification system using a Sunfire Prep C18 OBD column [5 μm, 19×50 mm; flow rate, 20 mL/min; Solvent A: H₂O with 0.1% HCO₂H; Solvent B: CH₃CN with 0.1% HCO₂H; injection volume: 4.0 mL (CH₃CN); gradient: 80→100% B over 15 min; mass-directed fraction collection]. Fractions with the desired MW were collected and concentrated on a RotaVap at 25° C. to remove most of the acetonitrile. The resulting mostly aqueous solution was extracted with EtOAc. The combined EtOAc extracts were dried (Na₂SO₄) and concentrated to give 290 mg of pure 1-7 (67%).
(4aS,11aR,12aS,13S)-3-(benzyloxy)-13-(dimethylamino)-4a,5,7-trihydroxy-10-methoxy-11a,12,12a,13-tetrahydrotetraceno[2,3-dfisoxazole-4,6(4aH,11H)-dione (1-8). Aqueous HF (2.4 mL, 48%) and TFA (0.1 mL) were added to a CH₃CN solution (9 mL) of 1-7 (210 mg, 0.29 mmol) in a polypropylene tube at 25° C. The reaction was stirred at 25° C. for 18 h. The resulting mixture was poured into an aqueous solution of K₂HPO₄(21 g, dissolved in 150 mL water). The mixture was extracted with EtOAc. The combined EtOAc extracts were dried (Na₂SO₄) and concentrated to yield 86 mg of crude 1-8.
Compound 100. Palladium on carbon (10 mg, 10 wt %) was added to a MeOH/dioxane solution (4 mL/4 mL) of crude 1-8 (86 mg). The reaction was purged with hydrogen and stirred under H₂(balloon) at 25° C. for 1 h. The reaction mixture was filtered through a small Celite plug. The filtrate was concentrated to yield the crude product. Preparative reverse phase HPLC purification on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-1 100A column [10 μm, 150×21.20 mm; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 4.0 mL (0.05 N HCl/water); gradient: 0→100% B over 15 min; mass-directed fraction collection]. Fractions with the desired MW were collected and freeze-dried to yield 47 mg of Compound 100 (81% for 2 steps): ¹H NMR (400 MHz, CD₃OD) δ 7.21 (d, J=8.2 Hz, 1H), 6.78 (d, J=8.2 Hz, 1H), 4.05 (s, 1H), 3.78 (s, 3H), 3.08-2.90 (m, 3H), 3.01 (s, 3H), 2.94 (s, 3H), 2.20-2.11 (m, 2H), 1.67-1.56 (m, 1H); MS (ESI) m/z 445.23 (M+H).

Example 2

Synthesis of Compounds of Formula II, wherein Y is NH C(O) CH2 N(R2)(R3)

Phenyl 6-(benzyloxy)-3-methoxy-2-methylbenzoate (2-1). Phenol 1-4 (4.58 g, 17.7 mmol) was dissolved in anhydrous DMF (71 mL) and NaH (1.42 g, 35.5 g, 2 eq) was added. The mixture was stirred at rt for 30 min. Benzylbromide (4.2 mL, 35.5 mmol, 2 eq) was then added. After stirring for an overnight at rt, the mixture was partitioned between EtOAc and H₂O. The organic layer was further washed with additional H₂O three times and brine once. The organic phase was dried over Na₂SO₄, filtered and concentrated with rotavapor. Purification of the residue by flash chromatography (silica gel, 97:3 hexanes/EtOAc) gave 2-1 (4.09 g) as white solid:¹H NMR (400 MHz, CDCl₃) δ 7.45-7.22 (m, 8H), 7.13 (m, 2H), 6.82 (m, 2H), 5.11 (s, 2H), 3.81 (s, 3H), 2.32 (s, 3H); MS (ESI) m/z 371.2 (M+Na), calcd for C₂₂H₂₀NaO₄371.14.
Phenyl 2-(benzyloxy)-5-methoxy-6-methyl-3-nitrobenzoate (2-2). Solid Cu(NO₃)_2.xH₂O (3.006 g, 12.9 mmol, 1.1 eq) was added to a stirred solution of the compound 2-1 (4.09 g, 11.8 mmol) in acetic anhydride (47 mL) at 0° C. The reaction mixture was stirred at 0° C. for 1 h and rt for 2 h, then poured into 100 mL ice-water. Stirring was continued for another 1 h. The resulting yellow precipitate was collected by filtration. Further purification with flash chromatography (silica gel, 95:5 hexanes/EtOAc) yielded compound 2-2 as light yellow solid (3.58 g): ¹H NMR (400 MHz, CDCl₃) δ 7.50 (s, 1H), 7.47-7.25 (m, 8H), 7.02-7.00 (m, 2H), 5.11 (s, 2H), 3.92 (s, 3H), 2.36 (s, 3H); MS (ESI) m/z 392.2 (M−H), calcd for C₂₂H₁₈NO₆392.12.
Phenyl 2-(benzyloxy)-5-methoxy-6-methyl-3-aminobenzoate (2-3). A mixture of nitro 2-2 (3.58 g, 9.11 mmol), Na₂S₂O₄(9.33 g, 45.5 mmol, 5 equiv), 136 mL THF, and 87 mL H₂O was stirred at rt for an overnight. After removing most of THF with rotavapor, the aqueous solution was extracted with EtOAc three times. The combined organic layers were washed with brine, dried over Na₂SO₄, filtered and concentrated. The crude product 2-3 was used directly in the next step.
Phenyl 2-(benzyloxy)-3-(bis(tert-butoxycarbonyl)amino)-5-methoxy-6-methylbenzoate (2-4). Di-tert-butyl dicarbonate (5.04 g, 23.1 mmol, 2.5 eq) and DMAP (56 mg, 0.46 mmol, 0.05 eq) were added to the solution of 2-3 (3.36 g, 9.24 mmol) in anhydrous DMF (92 mL). The resulting mixture was stirred at rt for 5 h, and then diluted with EtOAc. The solution was washed with H₂O three times, brine, dried over Na₂SO₄, filtered and concentrated. Further purification with flash chromatography (silica gel, 9:1 hexanes/EtOAc) yielded compound 2-4 as white solid (4.20 g): ¹H NMR (400 MHz, CDCl₃) δ 7.34-7.14 (m, 8H), 6.96 (d, J=7.8 Hz, 2H), 6.65 (s, 1H), 4.86 (s, 2H), 3.76 (s, 3H), 2.24 (s, 3H), 1.33 (s, 18H); MS (ESI) m/z 586.2 (M+Na), calcd for C₃₂H₃₇NNaO₈586.25.
Intermediate 2-5.
A solution of nBuLi in hexanes (1.60 M, 5.70 mL, 9.13 mmol, 1.1 eq) was added dropwise to a solution of ⁱPr₂NH (1.29 mL, 9.13 mmol, 1.1 eq) and TMEDA (1.49 mL, 9.96 mmol, 1.2 eq) in THF (23 mL) at −78° C. The resulting solution was stirred at −78° C. for 1 h whereupon a solution of compound 2-4 (4.68 g, 8.30 mmol, 1 eq) in THF (30 mL) was added dropwise via cannula (colorless to dark orange-red). After completion of addition, the mixture was stirred for another 30 min at −78° C., and then cooled to −100° C. Pre-cooled to −78° C. solution of enone 1-6 (2.0 g, 4.15 mmol, 0.5 eq) in THF (30 mL) was added dropwise via cannula. The resulting red color mixture was allowed to warm to −20° C. in 2 h. The reaction was quenched with sat. aq. NH₄Cl, then extracted with EtOAc three times. The combined EtOAc extracts were washed with brine, dried (Na₂SO₄), and concentrated. Purification of the residue by flash chromatography (silica gel, 95:5 to 85:15 hexanes/EtOAc) gave desired product 2-5 (3.589 g) as a light yellow foam: ¹H NMR (400 MHz, CDCl₃) δ 16.05 (s, 1H), 7.52-7.26 (m, 10H), 6.85 (s, 1H), 5.35 (s, 2H), 4.97 (d, J=9.8 Hz, 1H), 4.73 (d, J=9.8 Hz, 1H), 3.99 (d, J=10.4 Hz, 1H), 3.80 (s, 3H), 3.36 (dd, J=16.5, 4.9 Hz, 1H), 2.98-2.92 (m, 1H), 2.60-2.40 (m, 8H), 2.36-2.28 (m, 1H), 2.16-2.13 (m, 1H), 1.38 (s, 18H), 0.80 (s, 9H), 0.24 (s, 3H), 0.13 (s, 3H); MS (ESI) m/z 952.59 (M+H), calcd for C₅₂H₆₆N₃O₁₂Si 952.43.
(4aS,11aR,12aS,13S)-8-amino-3,7-bis(benzyloxy)-4a-(tert-butyldimethylsilyloxy)-13-(dimethylamino)-5-hydroxy-10-methoxy-11a,12,12a,13-tetrahydrotetraceno[2,3-d]isoxazole-4,6(4aH,11H)-dione (2-6). To a solution of compound 2-5 (468 mg, 0.49 mmol) in anhydrous dioxane (9 mL) was added solution of HCl in dioxane (4M, 9 mL) at rt. The resulting mixture was stirred at rt and the reaction was monitored by LC-MS. The volatiles were evaporated after SM was completely consumed. The residue was suspended in EtOAc, and washed with sat. NaHCO₃, brine, dried (Na₂SO₄), and concentrated. Purification of the residue by flash chromatography (silica gel, 80:20 hexanes/EtOAc) gave desired product 2-6 (422 mg) as a light yellow foam: ¹H NMR (400 MHz, CDCl₃) δ 16.14 (s, 1H), 7.52-7.26 (m, 10H), 6.48 (s, 1H), 5.35 (s, 2H), 4.88 (d, J=9.8 Hz, 1H), 4.81 (d, J=9.8 Hz, 1H), 3.84 (br s, 1H), 3.74 (s, 3H), 3.22 (dd, J=16.5, 4.9 Hz, 1H), 2.98-2.88 (m, 1H), 2.60-2.40 (m, 8H), 2.31-2.20 (m, 1H), 2.16-2.10 (m, 1H), 0.82 (s, 9H), 0.27 (s, 3H), 0.13 (s, 3H); MS (ESI) m/z 752.3 (M+H), calcd for C₄₂H₅₀N₃O₈Si 752.33.
The choice of amine NHR²R³used to convert 2-6 to 2-7 varied depending upon the desired final product.
Compound 101. 2-6 (29 mg, 0.039 mmol) was dissolved in THF (1.5 mL).
bromoacetyl bromide (4.0 μL, 0.046 mmol) was added. After stirred at rt for 30 min, pyrrolidine (16.0 μL, 0.19 mmol) was added. Stirring was continued at rt. The reaction mixture was poured into brine after SM was completely consumed and extracted with EtOAc three times. The combined EtOAc layers were dried with Na₂SO₄and concentrated to give a crude 2-7 wherein R²and R³are taken together to from pyrrolidine, which was used directly for the next step without purification. In a plastic vial, 2-7 was dissolved in CH₃CN (1 mL). Aqueous HF (48%, 0.25 mL) was added. After stirred at rt for 16 h, the reaction mixture was poured into aqueous solution (12.5 mL) of K₂HPO₄(1.75 g). The resulting mixture was extracted three times with EtOAc. The combined organic phases were washed with brine, dried, concentrated to give crude product. The above crude was dissolved in 0.5 N HCl in MeOH (155 μL, 2 eq). The excess volatiles were evaporated. The pre-formed HCl salt was re-dissolved in MeOH (2.0 mL) and to the resulting solution was added palladium on carbon (10% wt, 9.0 mg, 30% w/w). The reaction flask was briefly evacuated and re-filled with hydrogen. The reaction mixture was stirred at rt and monitored by LC-MS. After SM was consumed, the mixture was filtered through a small pad of Celite. The filtrate was concentrated to give crude, which was purified by HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-γ 100 R column [30×21.20 mm, 10 micron; flow rate, 20 mL/min; Solvent A: 0.05 N HC1/water; Solvent B: CH3CN; injection volume: 4.0 mL (0.05 N HCl/water); gradient: 10→50% B over 10 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 5.14-5.60 min, were collected and freeze-dried to give Compound 101 as a yellow solid: ¹H NMR (400 MHz, CD₃OD) δ 8.11 (s, 1H), 4.32 (s, 2H), 4.09 (s, 1H), 3.81-3.75 (m, 5H), 3.30-3.15 (m, 3H), 3.10-2.90 (m, 8H), 2.25-2.00 (m, 6H), 1.68-1.54 (m, 1H); MS (ESI) m/z 571.2 (M+H), calcd for C₂₈H₃₅N₄O₉571.23.
Compound 102. Compound 102 was obtained by the procedure of Compound 101 employing azetidine as NR²R³. Crude product was purified by HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ, RP-γ 100 R column [30×21.20 mm, 10 micron; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 4.0 mL (0.05 N HCl/water); gradient: 10→40% B over 10 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 5.36-5.80 min, were collected and freeze-dried to give Compound 102 as a yellow solid: ¹H NMR (400 MHz, CD₃OD) δ 8.08 (s, 1H), 4.42-4.34 (m, 4H), 4.25-4.18 (m, 2H), 4.10 (s, 1H), 3.77 (s, 3H), 3.28-3.20 (m, 1H), 3.08-2.92 (m, 8H), 2.70-2.62 (m, 1H), 2.56-2.44 (m, 1H), 2.22-2.06 (m, 2H), 1.65-1.56 (m, 1H); MS (ESI) m/z 557.2 (M+H), calcd for C₂₇H₃₃N₄O₉557.22.
Compound 103. Compound 103 was obtained by the procedure of Compound 101 employing piperidine as NR²R³. Crude product was purified by HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ, RP-γ 100 R column [30×21.20 mm, 10 micron; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 4.0 mL (0.05 N HCl/water); gradient: 10→30% B over 10 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 7.12-7.80 min, were collected and freeze-dried to give Compound 103 as a yellow solid: ¹H NMR (400 MHz, CD₃OD) δ 8.11 (s, 1H), 4.19 (s, 2H), 4.09 (s, 1H), 3.79 (s, 3H), 3.65-3.62 (m, 2H), 3.28-3.20 (m, 1H), 3.18-2.90 (m, 10H), 2.25-2.08 (m, 2H), 2.00-1.80 (m, 6H), 1.65-1.56 (m, 1H); MS (ESI) m/z 585.2 (M+H), calcd for C₂₉H₃₇N₄O₉585.25.
Compound 104. Compound 104 was obtained by the procedure of Compound 101 employing N-ethyl methylamine as NR²R³. Crude product was purified by HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ, RP-γ 100 R column [30×21.20 mm, 10 micron; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 4.0 mL (0.05 N HCl/water); gradient: 10→30% B over 10 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 5.80-6.30 min, were collected and freeze-dried to give Compound 104 as a yellow solid: ¹H NMR (400 MHz, CD₃OD) δ 8.12 (s, 1H), 4.30 (d, J=16.0 Hz, 1H), 4.19 (d, J=16.0 Hz, 1H), 4.10 (s, 1H), 3.80 (s, 3H), 3.45-3.20 (m, 3H), 3.10-2.90 (m, 11H), 2.25-2.08 (m, 2H), 1.65-1.56 (m, 1H), 1.40 (t, J=7.3 Hz, 3H); MS (ESI) m/z 559.2 (M+H), calcd for C₂₇H₃₅N₄O₉559.23.
Compound 105. Compound 105 was obtained by the procedure of Compound 101 employing dimethylamine as NR²R³. Crude product was purified by HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-γ 100 R column [30×21.20 mm, 10 micron; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH3CN; injection volume: 4.0 mL (0.05 N HCl/water); gradient: 10→30% B over 10 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 5.76-6.22 min, were collected and freeze-dried to give Compound 105 as a yellow solid: ¹H NMR (400 MHz, CD₃OD) δ 8.12 (s, 1H), 4.24 (s, 2H), 4.09 (s, 1H), 3.80 (s, 3H), 3.30-3.25 (m, 1H), 3.10-2.90 (m, 14 H), 2.25-2.08 (m, 2H), 1.65-1.56 (m, 1H); MS (ESI) m/z 545.2 (M+H), calcd for C₂₆H₃₃N₄O₉545.22.
Compound 106. Compound 106 was obtained by the procedure of Compound 101 employing isobutylamine as NR²R³. Crude product was purified by HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-γ 100 R column [30×21.20 mm, 10 micron; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 4.0 mL (0.05 N HCl/water); gradient: 10→30% B over 10 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 7.36-8.05 min, were collected and freeze-dried to give Compound 106 as a yellow solid: iH NMR (400 MHz, CD₃OD) δ 8.13 (s, 1H), 4.09 (s, 3H), 3.79 (s, 3H), 3.30-3.25 (m, 1H), 3.10-2.90 (m, 10H), 2.25-2.05 (m, 3H), 1.65-1.56 (m, 1H), 1.07 (d, J=6.9 Hz, 6H); MS (ESI) m/z 573.3 (M+H), calcd for C₂₈H₃₇N₄O₉573.25.
Compound 107. Compound 107 was obtained by the procedure of Compound 101 employing isopropylamine as NR²R³. Crude product was purified by HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ, RP-γ 100 R column [30×21.20 mm, 10 micron; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 4.0 mL (0.05 N HCl/water); gradient: 10→30% B over 10 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 6.10-6.54 min, were collected and freeze-dried to give Compound 107 as a yellow solid: ¹H NMR (400 MHz, CD₃OD) δ 8.13 (s, 1H), 4.09 (s, 3H), 3.79 (s, 3H), 3.45-3.55 (m, 1H), 3.30-3.25 (m, 1H), 3.10-2.90 (m, 8H), 2.25-2.10 (m, 2H), 1.65-1.56 (m, 1H), 1.38 (d, J=6.4 Hz, 6H); MS (ESI) m/z 559.3 (M+H), calcd for C₂₇H₃₅N₄O₉559.23.
Compound 108. Compound 108 was obtained by the procedure of Compound 101 employing cyclopropylamine as NR²R³. Crude product was purified by HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-γ 100 R column [30×21.20 mm, 10 micron; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 4.0 mL (0.05 N HCl/water); gradient: 10→30% B over 10 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 5.82-6.50 min, were collected and freeze-dried to give Compound 108 as a yellow solid: ¹H NMR (400 MHz, CD₃OD) δ 8.13 (s, 1H), 4.09 (s, 3H), 3.79 (s, 3H), 3.45-3.55 (m, 1H), 3.30-3.25 (m, 1H), 3.10-2.90 (m, 8H), 2.25-2.10 (m, 2H), 1.65-1.56 (m, 1H), 1.38 (d, J=6.4 Hz, 6H); MS (ESI) m/z 557.3 (M+H), calcd for C₂₇H₃₃N₄O₉557.22.
Compound 109. Compound 109 was obtained by the procedure of Compound 101 employing tert-butylamine as NR²R³. Crude product was purified by HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-γ 100 R column [30×21.20 mm, 10 micron; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 4.0 mL (0.05 N HCl/water); gradient: 10→30% B over 10 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 6.46-6.92 min, were collected and freeze-dried to give Compound 109 as a yellow solid: ¹H NMR (400 MHz, CD₃OD) δ 8.14 (s, 1H), 4.08 (s, 3H), 3.78 (s, 3H), 3.30-3.25 (m, 1H), 3.10-2.90 (m, 8H), 2.25-2.10 (m, 2H), 1.65-1.56 (m, 1H), 1.42 (s, 9H); MS (ESI) m/z 573.2 (M+H), calcd for C₂₈H₃₇N₄O₉573.25.
Compound 110. Compound 110 was obtained from 2-5 by HF treatment and hydrogenation according to procedures used in the preparation of Compound 101. Crude product was purified by HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-γ 100 R column [30×21.20 mm, 10 micron; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 4.0 mL (0.05 N HCl/water); gradient: 10→30% B over 10 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 4.88-5.78 min, were collected and freeze-dried to give Compound 110 as a yellow solid: ¹H NMR (400 MHz, CD₃OD) δ 7.27 (s, 1H), 4.09 (s, 1H), 3.83 (s, 3H), 3.30-3.25 (m, 1H), 3.10-2.90 (m, 8H), 2.25-2.10 (m, 2H), 1.65-1.56 (m, 1H); MS (ESI) m/z 460.2 (M+H), calcd for C₂₂H₂₆N₃O₈460.16.
Compound 111. Compound 111 was obtained by the procedure of Compound 101, substituting bromoacetyl bromide and pyrrolidine with 3,3,-dimethylbutyryl chloride. Crude product was purified by HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-γ 100 R column [30×21.20 mm, 10 micron; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 4.0 mL (0.05 N HCl/water); gradient: 10→30% B over 10 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 12.40-13.97 min, were collected and freeze-dried to give Compound 111 as a yellow solid: ¹H NMR (400 MHz, CD₃OD) δ 7.99 (s, 1H), 4.07 (s, 1H), 3.79 (s, 3H), 3.30-3.25 (m, 1H), 3.10-2.90 (m, 8H), 2.34 (s, 2H), 2.25-2.10 (m, 2H), 1.65-1.56 (m, 1H), 1.10 (s, 9H); MS (ESI) m/z 558.0 (M+H), calcd for C₂₈H₃₆N₃O₉558.24.
Compound 112. Compound 112 was obtained by the procedure of Compound 101 employing 3-fluoroazetidine as NR²R³. Crude product was purified by HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-γ 100 R column [30×21.20 mm, 10 micron; flow rate, 20 mL/min; Solvent A: 0.05 N TFA/water; Solvent B: CH₃CN; injection volume: 4.0 mL (0.05 N HCl/water); gradient: 10→30% B over 20 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 12.35-13.50 min, were collected and freeze-dried to give Compound 112 as a yellow solid: ¹H NMR (400 MHz, CD₃OD) δ 8.10 (s, 1H), 5.51-5.37 (m, 1H), 4.70-4.39 (m, 6H), 4.05 (s, 1H), 3.79 (s, 3H), 3.30-3.25 (m, 1H), 3.10-2.90 (m, 8H), 2.25-2.10 (m, 2H), 1.65-1.56 (m, 1H); MS (ESI) m/z 575.2 (M+H), calcd for C₂₇H₃₂FN₄O₉575.21.
Compound 113. Compound 113 was obtained by the procedure of Compound 101, substituting bromoacetyl bromide and pyrrolidine with 4,4,-dimethylpentyryl chloride. Crude product was purified by HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-γ 100 R column [30×21.20 mm, 10 micron; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 4.0 mL (0.05 N HCl/water); gradient: 15→60% B over 10 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 9.06-9.74 min, were collected and freeze-dried to give Compound 113 as a yellow solid: ¹H NMR (400 MHz, CD₃OD) δ 8.02 (s, 1H), 4.07 (s, 1H), 3.78 (s, 3H), 3.30-3.25 (m, 1H), 3.10-2.90 (m, 8H), 2.48-2.44 (m, 2H), 2.25-2.10 (m, 2H), 1.65-1.56 (m, 3H), 0.96 (s, 9H); MS (ESI) m/z 572.4 (M+H), calcd for C₂₉H₃₈N₃O₉572.25.
Compound 114. Compound 114 was obtained by the procedure of Compound 101 employing (R)-3-fluoropyrrolidine as NR²R³. Crude product was purified by HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-γ 100 R column [30×21.20 mm, 10 micron; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 4.0 mL (0.05 N HCl/water); gradient: 5→25% B over 12 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 9.05-11.05 min, were collected and freeze-dried to give Compound 114 as a yellow solid: ¹H NMR (400 MHz, CD₃OD) δ 8.13 (s, 1H), 5.55-5.42 (m, 1H), 4.45-4.41 (m, 2H), 4.15-3.95 (m, 3H), 3.79 (s, 3H), 3.50-3.40 (m, 2H), 3.30-3.25 (m, 1H), 3.10-2.90 (m, 8H), 2.50-2.35 (m, 2H), 2.25-2.10 (m, 2H), 1.65-1.56 (m, 1H); MS (ESI) m/z 589.3 (M+H), calcd for C₂₉H₃₄FN₄O₉589.22.
Compound 115. Compound 115 was obtained by the procedure of Compound 101 employing (S)-3-fluoropyrrolidine as NR²R³. Crude product was purified by HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-γ 100 R column [30×21.20 mm, 10 micron; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 4.0 mL (0.05 N HCl/water); gradient: 5→30% B over 12 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 8.05-9.85 min, were collected and freeze-dried to give Compound 115 as a yellow solid: ¹H NMR (400 MHz, CD₃OD) δ 8.12 (s, 1H), 5.55-5.42 (m, 1H), 4.46-4.42 (m, 2H), 4.15-3.95 (m, 3H), 3.79 (s, 3H), 3.50-3.40 (m, 2H), 3.30-3.25 (m, 1H), 3.10-2.90 (m, 8H), 2.55-2.40 (m, 2H), 2.25-2.10 (m, 2H), 1.65-1.56 (m, 1H); MS (ESI) m/z 589.3 (M+H), calcd for C₂₉H₃₄FN₄O₉589.22.
Compound 116. Compound 116 was obtained by the procedure of Compound 101 employing O-tert-butyl hydroxylamine as NR²R³. ¹HNMR (400 MHz, CD₃OD) δ 8.12 (s, 1H), 4.34 (s, 2H), 4.15 (s, 1H), 3.80 (s, 3H), 2.85-3.50 (m, 3H), 3.07 (s, 3H), 2.99 (s, 3H), 2.22-2.28 (m, 1H), 2.07-2.16 (m, 1H), 1.55-1.65 (m, 1H), 1.47 (s, 9H); MS (ESI) m/z 589.1 (M+H), calcd for C₂₈H₃₇N₄O₁₀589.25.
Compound 117. Compound 117 was obtained by the procedure of Compound 101 substituting bromoacetyl bromide and an amine with tert-butoxyacetyl chloride. ¹H NMR (400 MHz, CD₃OD) δ 8.31 (s, 1H), 4.08 (s, 1H), 4.07 (s, 2H), 3.80 (s, 3H), 3.24 (dd, J=7.3, 16.0 Hz, 1H), 2.90-3.10 (m, 2H), 3.05 (s, 3H), 2.97 (s, 3H), 2.15-2.22 (m, 1H), 2.05-2.21 (m, 1H), 1.55-1.65 (m, 1H), 1.32 (s, 9H); MS (ESI) m/z 574.2 (M+H), calcd for C₂₈H₃₇N₃O₁₀574.24.
Compound 118. Compound 118 was prepared similarly to Compound 101 using ethylisopropylamine as NR²R³. ¹HNMR (400 MHz, CD₃OD) δ 8.13 (s, 1H), 4.32 (s, J=17.5 Hz, 1H), 4.08 (s, 1H), 4.06 (d, J=17.5 Hz, 1H), 3.78 (s, 3H), 3.75-3.85 (m, 2H), 2.80-3.50 (m, 10H), 2.10-2.22 (m, 2H), 1.50-1.70 (m, 1H), 1.35-1.45 (m, 9H); MS (ESI) m/z 587.1 (M+H), calcd for C₂₉H₃₉N₄O₉587.27.
Compound 119. Compound 119 was prepared similarly to Compound 101 using imidazole as NR²R³. ¹HNMR (400 MHz, CD₃OD) δ 9.02 (s, 1H), 8.07 (s, 1H), 7.68 (s, 1H), 7.63 (s, 1H), 5.34 (s, 2H), 4.07 (s, 1H), 3.76 (s, 3H), 2.80-3.50 (m, 9H), 2.10-2.22 (m, 2H), 1.55-1.70 (m, 1H); MS (ESI) m/z 568.1 (M+H), calcd for C₂₇H₃₀N₅O₉568.21.

Example 3

Synthesis of Certain Compounds of Formula II, wherein Y is NH C(O) CH2 NH(R3), or NH C(O) heterocyclyl. Scheme 3 depicts the synthesis of compounds of Formula II, wherein Y is NH C(O) heterocyclyl or NH C(O) CH2 NH(R3) where R3 is not hydrogen.
Compound 120. Compound 110 (40 mg crude, ˜0.08 mmol, 1 equiv) was dissolved in CH₃CN and 3 drops of DMPU. Then bromoacetyl bromide (24 mg, 0.12 mmol, 1.5 equiv) and Na₂CO₃(51 mg, 0.48 mmol, 6.0 equiv) were added into the reaction mixture and stirred at rt for 1 hr. Ethylamine (0.80 mmol, 10.0 equiv) was added into the reaction mixture and stirred for 1 h. HCl/MeOH (, 1 mL 4 N) was added at 0° C. and the solution was stirred for 5 min, concentrated in vacuo, and purified by reverse phase preparative HPLC to yield the desired Compound 120 as a yellow solid: ¹H NMR (400 MHz, CD₃OD) δ 8.11 (s 1H), 4.10-4.09 (m, 3H), 3.79 (s, 3H), 3.23-2.95 (m, 11H), 2.25-2.10 (m, 2H), 1.69-1.53 (m, 1H), 1.37 (t, J=7.2 Hz, 3H); MS (ESI) m/z 545.2 (M+H).
Compound 121. Compound 121 was prepared similarly to Compound 120, substituting ethylamine with 2-fluoroethylamine: ¹H NMR (400 MHz, CD₃OD) δ 8.08 (s 1H), 4.68 (t, J=4.4 Hz, 1H), 4.11 (s, 2H), 4.01 (s, 1H), 3.74 (s, 3H), 3.49 (t, J=4.8 Hz, 1H), 3.42 (t, J=4.8 Hz, 1H), 3.25-2.87 (m, 10H), 2.15-2.03 (m, 2H), 1.61-1.49 (m, 1H); MS (ESI) m/z 563.2 (M+H).
Compound 122. Compound 122 was prepared similarly to Compound 120, substituting ethylamine with 2,2-difluoroethylamine: ¹H NMR (400 MHz, CD₃OD) δ 8.15 (s 1H), 6.36 (t, J=44 Hz, 1H), 4.21 (s, 2H), 4.09 (s, 1H), 3.80 (s, 3H), 3.73-3.65 (m, 2H), 3.13-2.95 (m, 9H), 2.23-2.09 (m, 2H), 1.69-1.57 (m, 1H); MS (ESI) m/z 581.1 (M+H).
Compound 123. Compound 123 was prepared similarly to Compound 120, substituting ethylamine with n-propylamine: ¹H NMR (400 MHz, CD₃OD) δ 8.14 (s 1H), 4.09 (s, 3H), 3.81 (s, 3H), 3.30-3.25 (m, 2H), 3.10-2.95 (m, 9H), 2.23-2.08 (m, 2H), 1.83-1.73 (m, 2H), 1.68-1.57 (m, 1H), 1.08 (t, J=7.2 Hz, 3H); MS (ESI) m/z 559.2 (M+H).
Compound 124. Compound 124 was prepared similarly to Compound 120, substituting ethylamine with 2-methoxyethylamine: ¹H NMR (400 MHz, CD₃OD) δ 8.13 (s, 1H), 4.13 (s, 2H), 4.05-3.93 (m, 1H), 3.80 (s, 3H), 3.75-3.65 (m, 2H), 3.44 (s, 3H), 3.36-3.23 (m, 3H), 3.10-2.90 (m, 8H), 2.25-2.05 (m, 2H), 1.68-1.59 (m, 1H); MS (ESI) m/z 575.2 (M+H).
Compound 125. Compound 125 was prepared similarly to Compound 120, substituting ethylamine with n-hexylamine: ¹H NMR (400 MHz, CD₃OD) δ 8.12 (s 1H), 4.06 (s, 3H), 3.80 (s, 3H), 3.12-2.91 (m, 11H), 2.19-2.08 (m, 2H), 1.75-1.55 (m, 3H), 1.45-1.32 (m, 6H), 0.92 (t, J=7.2 Hz, 3H); MS (ESI) m/z 601.3 (M+H).
Compound 126. Compound 126 was prepared similarly to Compound 120, substituting ethylamine with cyclopropylmethylamine: ¹H NMR (400 MHz, CD₃OD) δ 8.13 (s 1H), 4.13 (s, 2H), 4.10 (s, 1H), 3.80 (s, 3H), 3.05-2.91 (m, 11H), 2.25-2.10 (m, 2H), 1.68-1.56 (m, 1H), 1.19-1.10 (m, 1H), 0.78-0.73 (m, 2H), 0.48-0.43 (m, 2H); MS (ESI) m/z 571.2 (M+H).
Compound 127. Compound 127 was prepared similarly to Compound 120, substituting ethylamine with cyclobutylmethylamine: ¹H NMR (400 MHz, CD₃OD) δ 8.33 (s 1H), 4.28 (s, 1H), 4.25 (s, 2H), 3.99 (s, 3H), 3.37-3.14 (m, 11H), 2.97-2.86 (m, 1H), 2.45-2.06 (m, 8H), 1.87-1.75 (m, 1H); MS (ESI) m/z 585.3 (M+H).
Compound 128. Compound 128 was prepared similarly to Compound 120, substituting ethylamine with cyclopentylmethylamine ¹H NMR (400 MHz, CD₃OD) δ 8.34 (s 1H), 4.29 (s, 3H), 4.07 (s, 3H), 3.30-3.10 (m, 11H), 2.50-2.30 (m, 3H), 2.18-2.10 (m, 2H), 1.95-1.78 (m, 4H), 1.55-1.46 (m, 3H); MS (ESI) m/z 599.3 (M+H).
Compound 129. Compound 129 was prepared similarly to Compound 120, substituting ethylamine with cyclohexylmethylamine: ¹H NMR (400 MHz, CD₃OD) δ 8.14 (s 1H), 4.09 (s, 3H), 3.80 (s, 3H), 3.05-2.95 (m, 11H), 2.23-2.08 (m, 2H), 1.88-1.55 (m, 8H), 1.40-1.21 (m, 4H); MS (ESI) m/z 613.3 (M+H).
Compound 130. Compound 130 was prepared similarly to Compound 120, substituting ethylamine with neopentylamine: ¹H NMR (400 MHz, CD₃OD) δ 8.13 (s 1H), 4.11-4.10 (m, 3H), 3.80 (s, 3H), 3.26-3.20 (m, 1H), 3.08-2.95 (m, 10H), 2.25-2.06 (m, 2H), 1.66-1.54 (m, 1H), 1.12 (s, 9H); MS (ESI) m/z 587.3 (M+H).
Compound 131. Compound 131 was prepared similarly to Compound 120, substituting ethylamine with cyclobutylamine: ¹H NMR (400 MHz, CD₃OD) δ 8.11 (s 1H), 4.07 (s, 1H), 3.95 (s, 2H), 3.88-3.80 (m, 1H), 3.77 (s, 3H), 3.25-3.20 (m, 1H), 3.06-2.92 (m, 8H), 2.38-2.06 (m, 6H), 1.95-1.84 (m, 2H), 1.63-1.54 (m, 1H); MS (ESI) m/z 571.2 (M+H).
Compound 132. Compound 132 was prepared similarly to Compound 120, substituting ethylamine with cyclopentylamine: ¹H NMR (400 MHz, CD₃OD) δ 8.15 (s 1H), 4.10 (s, 3H), 3.84 (s, 3H), 3.68-3.64 (m, 1H), 3.26-3.22 (m, 1H), 3.08-2.95 (m, 8H), 2.25-2.10 (m, 4H), 1.92-1.60 (m, 7H); MS (ESI) m/z 585.3 (M+H).
Compound 133. Compound 133 was prepared similarly to Compound 120, substituting ethylamine with cyclohexylamine: ¹H NMR (400 MHz, CD₃OD) δ 8.12 (s 1H), 4.08 (s, 2H), 4.07 (s, 1H), 3.86 (s, 3H), 3.22-2.90 (m, 10H), 2.22-2.08 (m, 4H), 1.95-1.85 (m, 2H), 1.68-1.55 (m, 2H), 1.46-1.30 (m, 5H); MS (ESI) m/z 599.3 (M+H).
Compound 134. Compound 134 was prepared similarly to Compound 120, substituting ethylamine with aniline: ¹H NMR (400 MHz, CD₃OD) δ 8.22 (s 1H), 7.56-7.30 (m, 5H), 4.34 (s, 2H), 4.09 (s, 1H), 3.86 (s, 3H), 3.14-2.95 (m, 9H), 2.25-2.10 (m, 2H), 1.68-1.58 (m, 1H); MS (ESI) m/z 593.2 (M+H).
Compound 135. Compound 135 was prepared similarly to Compound 120, substituting ethylamine with N-methylpropylamine: ¹H NMR (400 MHz, CD₃OD) δ 8.11 (s 1H), 4.32 (d, J=16.0 Hz, 1H), 4.20 (d, J=16.0 Hz, 1H), 4.10 (s, 1H), 3.80 (s, 3H), 3.27-2.90 (m, 14H), 2.25-2.10 (m, 2H), 1.88-1.79 (m, 2H), 1.67-1.57 (m, 1H), 1.05 (t, J=7.2 Hz, 3H); MS (ESI) m/z 573.3 (M+H).
Compound 136. Compound 136 was prepared similarly to Compound 120, substituting ethylamine with diethylamine: ¹H NMR (400 MHz, CD₃OD) δ 8.10 (s 1H), 4.22 (s, 2H), 4.05 (s, 1H), 3.79 (s, 3H), 3.46-3.22 (m, 5H), 3.07-2.90 (m, 8H), 2.20-2.07 (m, 2H), 1.66-1.57 (m, 1H), 1.38 (t, J=7.2 Hz, 6H); MS (ESI) m/z 573.2 (M+H).
Compound 137. Compound 137 was prepared similarly to Compound 120, substituting ethylamine with 3-azabicyclo[3,3,0]octane: ¹H NMR (400 MHz, CD₃OD) δ 8.07 (d, J=9.2 Hz, 1H), 4.25-4.16 (m, 2H), 4.15-4.05 (m, 1H), 4.02 (s, 1H), 3.95-3.80 (m, 1H), 3.74 (s, 3H), 3.63-3.54 (m, 1H), 3.43-3.35 (m, 1H), 3.07-2.85 (m, 9H), 2.75-2.60 (m, 2H), 2.15-2.02 (m, 2H), 1.65-1.50 (m, 7H); MS (ESI) m/z 611.3 (M+H).
Compound 138. Compound 138 was prepared similarly to Compound 120, substituting ethylamine with isoindoline: ¹H NMR (400 MHz, CD₃OD) δ 8.16 (s 1H), 7.42 (s, 4H), 5.10-5.00 (m, 2H), 4.73-4.62 (m, 2H), 4.55 (s, 2H), 4.07 (s, 1H), 3.79 (s, 3H), 3.25-3.17 (m, 1H), 3.07-2.90 (m, 8H), 2.22-2.08 (m, 2H), 1.67-1.55 (m, 1H); MS (ESI) m/z 619.2 (M+H).
Compound 139. Compound 139 was prepared similarly to Compound 120, substituting bromoacetyl bromide/amine with 3-dimethylaminobenzoyl chloride: ¹H NMR (400 MHz, CD₃OD) δ 8.16 (s 1H), 8.02 (d, J=8.0 Hz, 1H), 7.91 (s, 1H), 7.85-7.82 (m, 1H), 7.71-7.67 (m, 1H), 4.01 (s, 1H), 3.73 (s, 3H), 3.28 (s, 6H), 3.20-3.16 (m, 1H), 3.01-2.85 (m, 8H), 2.20-1.98 (m, 2H), 1.57-1.48 (m, 1H), MS (ESI) m/z 607.1 (M+H).
Compound 140. Compound 140 was prepared similarly to Compound 120, substituting bromoacetyl bromide/amine with nicotinyl chloride: ¹H NMR (400 MHz, CD₃OD) δ 9.41 (s 1H), 9.14 (d, J=8.4 Hz, 1H), 9.06 (d, J=5.6 Hz, 1H), 8.23 (d, J=2.0 Hz, 1H), 8.04 (s, 1H), 4.01 (s, 1H), 3.84 (s, 3H), 3.20-3.16 (m, 1H), 3.08-2.95 (m, 8H), 2.25-2.12 (m, 2H); 1.70-1.58 (m, 1H), MS (ESI) m/z 565.1 (M+H).

Example 4

Synthesis of Certain Compounds of Formula II, wherein Y is —NH—C(O)-(saturated heterocyclyl). Scheme 4 depicts the synthesis of other compounds of Formula II, wherein Y is —NH—C(O)-(saturated heterocyclyl).
In Scheme 4, “PG” represents a protecting group and R^Arepresents hydrogen, (C₁-C₅)alkyl, —(C₀-C₅) alkylene-carbocyclyl, or —(C₀-C₅)alkylene-heterocyclyl. For all of the compounds made by Scheme 4 and described below, R^Zis hydrogen and R^Xand R^Yare taken together with the carbon and nitrogen atoms to which they are respectively bound to form an optionally substituted 4-7 membered saturated heterocyclyl. It will be readily apparent to those of skill in the art, however, that this Scheme 4 will also be useful to synthesize compounds where R^X, R^Yand R^Zare R², R^5band R^5b, respectively, as defined in structural formula (I).
Compound 141.
A solution of (S)-(−)-N-(trifluoroacetyl)prolyl chloride in DCM (0.1 M, 383 μL, 0.038 mmol, 1.2 equiv) was added to a solution of aniline 2-6 (24 mg, 0.032 mmol, 1.0 equiv) in THF (2 mL). The resulting light orange solution was stirred at rt for 5 min, diluted with brine (10 mL). The resulting mixture was extracted with EtOAc (2×15 mL). The combined organic extracts were dried (Na₂SO₄), filtered and concentrated to yield the crude product 4-1-1: MS (ESI) m/z 945.38 (M+H). Aqueous HF (48-50%, 0.2 mL) was added to a solution of the above crude product 4-1-1 in acetonitrile (0.5 mL) in a polypropylene reaction vessel at 23° C. The resulting mixture was stirred vigorously at 23° C. overnight and poured into aqueous K₂HPO₄(2.5 g dissolved in 20 mL water). The resulting mixture was extracted with EtOAc (30 mL, then 2×10 mL). The combined organic extracts were dried over anhydrous sodium sulfate, filtered, and concentrated. The residue was used directly in the next step without further purification.
The above crude product was dissolved in MeOH (2 mL) and dioxane (1 mL). Pd—C (10 wt %, 6 mg) was added in one portion at 23° C. The reaction vessel was sealed and purged with hydrogen by briefly evacuating the flask followed by flushing with hydrogen gas (1 atm). After stirring at 23° C. for 4 hrs, more Pd—C (10 wt %, 5 mg) was added. The resulting mixture was stirred for 2 h and filtered through a small Celite pad. The filtrate was concentrated. The residue was purified by a preparative reverse phase HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-γ 100A column [10 μm, 150×21.20 mm; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 3.0 mL (0.05 N HCl/water and MeCN, 1:1); gradient: 15→60% B over 10 min; mass-directed fraction collection]. Fractions containing the desired product, eluting at 7.3-8.0 min, were collected and freeze-dried to yield Compound 141 (11.9 mg). The product was re-purified by a preparative reverse phase HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-γ 100A column [10 μm, 150×21.20 mm; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 3.0 mL (0.05 N HCl/water and MeCN, 1:1); gradient: 15→60% B over 20 min; mass-directed fraction collection]. Fractions containing the desired product, eluting at 11.4-11.8 min, were collected and freeze-dried to yield Compound 141 (8.4 mg, 38% over 3 steps): ¹H NMR (400 MHz, CD₃OD) δ 8.03 (s, 1H), 4.81-4.78 (m, 1H), 4.07 (s, 1H), 3.85 (t, J=6.4 Hz, 2H), 3.78 (s, 3H), 3.27-3.21 (m, 1H), 3.03-2.92 (m, 8H), 2.40-2.32 (m, 1H), 2.20-2.03 (m, 5H), 1.66-1.56 (m, 1H); MS (ESI) m/z 653.31 (M+H).
Compound 142.
K₂CO₃(14.7 mg, 0.106 mmol, 1.6 equiv) was added in one portion to a solution of crude product 4-1-1 (0.067 mmol, 1.0 equiv) in a mixture of MeOH (2 mL), THF (0.5 mL) and water (0.3 mL). The resulting orange reaction mixture was stirred at rt overnight. More K₂CO₃(9 mg, 0.065 mmol, 0.98 equiv), and the reaction mixture was stirred at rt overnight. The reaction mixture was then diluted with brine (20 mL) and extracted with EtOAc (50 mL, then 20 mL). The combined organic extracts were dried over anhydrous sodium sulfate, filtered, and concentrated. The residue was purified by a Preparative reverse phase HPLC on a Waters Autopurification system using a Sunfire Prep C18 OBD column [5 μm, 19×50 mm; flow rate, 20 mL/min; Solvent A: H₂O with 0.1% HCO₂H; Solvent B: CH₃CN with 0.1% HCO₂H; injection volume: 4.0 mL (CH₃CN); gradient: 10→100% B over 10 min; mass-directed fraction collection]. Fractions with the desired MW, were collected and concentrated on a RotaVap at rt to remove most of the acetonitrile. The resulting mostly aqueous solution was neutralized with pH 7 buffer and extracted with EtOAc. The combined EtOAc extracts were dried (Na₂SO₄) and concentrated to the desired product 4-3-1 (19.3 mg, 34% over 2 steps): ¹H NMR (400 MHz, CDCl₃) δ 15.63 (br s, 1H), 11.94 (br s, 1H), 8.67 (s, 1H), 7.51-7.48 (m, 2H), 7.42-7.32 (m, 3H), 7.28-7.22 (m, 3H), 7.18-7.16 (m, 2H), 5.38 (s, 2H), 5.22, 4.52 (ABq, J=11.6 Hz, 2H), 4.60 (d, J=6.7 Hz, 1H), 4.01 (d, J=9.8 Hz, 1H), 3.55 (s, 3H), 3.51-3.23 (m, 3H), 2.95-2.88 (m, 1H), 2.64-2.43 (m, 8H), 2.24-1.89 (m, 5H), 1.59-1.51 (m, 1H), 0.80 (s, 9H), 0.24 (s, 3H), 0.14 (s, 3H); MS (ESI) m/z 849.36 (M+H).
Aqueous HF (48-50%, 0.2 mL) was added to a solution of Compound 4-3-1 (9 mg, 0.011 mmol, 1.0 equiv) in acetonitrile (0.5 mL) in a polypropylene reaction vessel at 23° C. The resulting mixture was stirred vigorously at 23° C. overnight and poured into aqueous K₂HPO₄(2.5 g dissolved in 20 mL water). The resulting mixture was extracted with EtOAc (30 mL, then 20 mL). The combined organic extracts were dried over anhydrous sodium sulfate, filtered, and concentrated. The residue was used directly in the next step without further purification.
The above crude product was dissolved in MeOH (2 mL) and dioxane (0.5 mL). Pd—C (10 wt %, 5 mg) was added in one portion at 23° C. The reaction vessel was sealed and purged with hydrogen by briefly evacuating the flask followed by flushing with hydrogen gas (1 atm). After stirring at 23° C. for 25 min, the resulting mixture was filtered through a small Celite pad. The filtrate was concentrated. The residue was purified by a preparative reverse phase HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-γ 100A column [10 μm, 150×21.20 mm; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 3.0 mL (0.05 N HCl/water and MeCN, 1:1); gradient: 0→30% B over 10 min; mass-directed fraction collection]. Fractions containing the desired product, eluting at 7.5-8.7 min, were collected and freeze-dried to yield Compound 142 (1.73 mg, some product was spilled during the purification): ¹H NMR (400 MHz, CD₃OD) δ 8.03 (s, 1H), 4.56 (t, J=6.8 Hz, 1H), 4.07 (s, 1H), 3.79 (s, 3H), 3.49-3.24 (m, 3H), 3.03-2.93 (m, 8H), 2.60-2.53 (m, 1H), 2.19-2.08 (m, 5H), 1.67-1.57 (m, 1H); MS (ESI) m/z 557.27 (M+H).
Compound 145.
K₂CO₃(43.9 mg, 0.318 mmol, 3.0 equiv) was added in one portion to a solution of crude product 4-1-1 (0.106 mmol, 1.0 equiv) in a mixture of MeOH (2 mL), THF (0.5 mL) and water (0.3 mL). The resulting brownish reaction mixture was stirred at rt for 3 h, and diluted with saturated aqueous ammonium chloride and pH 7 phosphate buffer (1:1, 30 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over anhydrous sodium sulfate, filtered, and concentrated. The crude product 4-3-1 was used directly in the next reaction. HCHO (47 μL, 0.636 mmol, 6.0 equiv), acetic acid (18 μL, 0.318 mmol, 3.0 equiv) and sodium triacetoxyborohydride (45 mg, 0.212 mmol, 2.0 equiv) were added sequentially to a solution of the above crude product 4-3-1 in 1,2-dichloroethane (3 mL) at 23° C. After stirring for 35 min, the reaction mixture was quenched by the addition of saturated aqueous sodium bicarbonate and pH 7 phosphate buffer (1:1, 30 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over anhydrous sodium sulfate, filtered, and concentrated. The residue was purified by a Preparative reverse phase HPLC on a Waters Autopurification system using a Sunfire Prep C18 OBD column [5 μm, 19×50 mm; flow rate, 20 mL/min; Solvent A: H₂O with 0.1% HCO₂H; Solvent B: CH₃CN with 0.1% HCO₂H; injection volume: 4.0 mL (CH₃CN); gradient: 20→75% B over 20 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 12.7-13.6 min, were collected and concentrated on a RotaVap at rt to remove most of the acetonitrile. The resulting mostly aqueous solution was neutralized with pH 7 phosphate buffer and extracted with EtOAc. The combined EtOAc extracts were dried (Na₂SO₄) and concentrated to the desired product 4-4-1 (44.5 mg, 48% over 3 steps): ¹H NMR (400 MHz, CDCl₃) δ 16.02 (br s, 1H), 10.09 (br s, 1H), 8.45 (s, 1H), 7.50-7.48 (m, 4H), 7.40-7.30 (m, 6H), 5.35 (s, 2H), 4.91, 4.80 (ABq, J=10.4 Hz, 2H), 3.99 (d, J=10.4 Hz, 1H), 3.87 (s, 3H), 3.32 (dd, J=4.9, 15.9 Hz, 1H), 3.05-2.91 (m, 3H), 2.56-2.41 (m, 8H), 2.36-2.23 (m, 5H), 2.14 (d, J=14.6 Hz, 1H), 1.95-1.89 (m, 1H), 1.78-1.68 (m, 1H), 1.62-1.53 (m, 1H), 1.39-1.33 (m, 1H), 0.81 (s, 9H), 0.26 (s, 3H), 0.12 (s, 3H); MS (ESI) m/z 863.56 (M+H).
Aqueous HF (48-50%, 0.3 mL) was added to a solution of Compound 4-4-1 (44.5 mg, 0.051 mmol, 1.0 equiv) in acetonitrile (0.8 mL) in a polypropylene reaction vessel at 23° C. The resulting mixture was stirred vigorously at 23° C. overnight and poured into aqueous K₂HPO₄(3.6 g dissolved in 30 mL water). The resulting mixture was extracted with EtOAc (2×25 mL). The combined organic extracts were dried over anhydrous sodium sulfate, filtered, and concentrated. The residue was used directly in the next step without further purification.
The above crude product was dissolved in MeOH (2 mL) and EtOAc (1 mL). Pd—C (10 wt %, 22 mg) was added in one portion at 23° C. The reaction vessel was sealed and purged with hydrogen by briefly evacuating the flask followed by flushing with hydrogen gas (1 atm). After stirring at 23° C. for 1 h 20 min, more Pd—C (10 wt %, 10 mg) was added. The resulting mixture was stirred under hydrogen for 2 h. Then s solution of HCl in MeOH (0.5 N, 204 μL, 2.0 equiv) was added. The resulting reaction mixture was stirred under hydrogen for 45 min, and filtered through a small Celite pad. The filtrate was concentrated. The residue was purified by a preparative reverse phase HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-γ 100A column [10 μm, 150×21.20 mm; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH3CN; injection volume: 3.0 mL (0.05 N HCl/water and MeCN, 1:1); gradient: 0→35% B over 10 min; mass-directed fraction collection]. Fractions containing the desired product, eluting at 7.3-8.2 min, were collected and freeze-dried to yield Compound 145 (15.0 mg, 46% yield over 2 steps): ¹H NMR (400 MHz, CD₃OD) δ 8.02 (s, 1H), 4.36 (t, J=7.8 Hz, 1H), 4.07 (s, 1H), 3.79 (s, 3H), 3.78-3.75 (m, 1H), 3.28-3.24 (m, 2H), 3.03-2.93 (m, 11H), 2.73-2.67 (m, 1H), 2.30-2.10 (m, 5H), 1.67-1.57 (m, 1H); MS (ESI) m/z 571.36 (M+H).
Compound 143.
DMF (0.5 mL) was added to a mixture of 2-6 (50 mg, 0.066 mmol, 1.0 equiv), pipecolinic acid (22 mg, 0.13 mmol, 2.0 equiv), EDCI (25 mg, 0.13 mmol, 2.0 equiv) and HOBt (9 mg, 0.066 mmol, 1.0 equiv). The resulting red solution was stirred at rt overnight, and purified by a Preparative reverse phase HPLC on a Waters Autopurification system using a Sunfire Prep C18 OBD column [5 μm, 19×50 mm; flow rate, 20 mL/min; Solvent A: H₂O with 0.1% HCO₂H; Solvent B: CH₃CN with 0.1% HCO₂H; injection volume: 4.0 mL (CH₃CN); gradient: 10→100% B over 10 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 5.8-7.2 min, were collected and freeze-dried to give the desired product 4-1-3 as a mixture of diastereomers (25.9 mg, 45%): ¹H NMR (400 MHz, CDCl₃) δ 15.92 (s, 0.33H), 15.89 (s, 0.66H), 8.00 (s, 0.33H), 7.84 (s, 0.66 H), 7.50-7.48 (m, 2H), 7.41-7.29 (m, 8H), 5.36-5.34 (m, 2H), 4.90-4.73 (m, 2H), 4.00-3.97 (m, 1H), 3.85 (s, 1H), 3.72 (s, 2H), 3.52-3.23 (m, 3H), 2.95-2.82 (m, 2H), 2.61-2.43 (m, 8H), 2.34-2.12 (m, 3H), 1.88-1.38 (m, 5H), 0.83-0.80 (m, 9H), 0.26-0.24 (m, 3H), 0.15-0.13 (m, 3H); MS (ESI) m/z 863.47 (M+H).
Aqueous HF (48-50%, 0.2 mL) was added to a solution of the above product 4-1-3 (13 mg, 0.015 mmol, 1.0 equiv) in acetonitrile (0.5 mL) in a polypropylene reaction vessel at 23° C. The resulting mixture was stirred vigorously at 23° C. overnight and poured into aqueous K₂HPO₄(2.5 g dissolved in 20 mL water). The resulting mixture was extracted with EtOAc (40 mL, then 2×15 mL). The combined organic extracts were dried over anhydrous sodium sulfate, filtered, and concentrated. The residue was used directly in the next step without further purification.
The above crude product was dissolved in MeOH (2 mL) and dioxane (0.5 mL). Pd—C (10 wt %, 5 mg) was added in one portion at 23° C. The reaction vessel was sealed and purged with hydrogen by briefly evacuating the flask followed by flushing with hydrogen gas (1 atm). After stirring at 23° C. for 1 h 30 min, the reaction mixture was filtered through a small Celite pad. The filtrate was concentrated. The residue was purified by a preparative reverse phase HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-γ 100A column [10 μm, 150×21.20 mm; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 3.0 mL (0.05 N HCl/water and MeCN, 1:1); gradient: 0→35% B over 10 min; mass-directed fraction collection]. Fractions containing the desired product, eluting at 8.5-9.3 min, were collected and freeze-dried to yield Compound 143 (2.3 mg, 24% yield over 2 steps): ¹H NMR (400 MHz, CD₃OD) δ 8.03 (s, 1H), 4.11-4.06 (m, 1H), 4.08 (s, 1H), 3.79 (s, 3H), 3.48-3.43 (m, 1H), 3.28-3.24 (m, 1H), 3.08-2.94 (m, 9H), 2.37-2.33 (m, 1H), 2.20-2.10 (m, 2H), 2.03-1.69 (m, 5H), 1.67-1.57 (m, 1H); MS (ESI) m/z 571.25 (M+H).
Compound 146.
HCHO (6.7 μL, 0.09 mmol, 6.0 equiv), acetic acid (5.2 μL, 0.09 mmol, 6.0 equiv) and sodium triacetoxyborohydride (9.5 mg, 0.045 mmol, 3.0 equiv) were added sequentially to a solution of Compound 4-1-3 in 1,2-dichloroethane (1 mL) at 23° C. After stirring for 2 h, the reaction mixture was quenched by the addition of saturated aqueous sodium bicarbonate and brine (1:1, 10 mL) and extracted with DCM (20 mL, then 10 mL). The combined organic extracts were dried over anhydrous sodium sulfate, filtered, and concentrated. The residue was purified by a Preparative reverse phase HPLC on a Waters Autopurification system using a Sunfire Prep C18 OBD column [5 μm, 19×50 mm; flow rate, 20 mL/min; Solvent A: H₂O with 0.1% HCO₂H; Solvent B: CH₃CN with 0.1% HCO₂H; injection volume: 4.0 mL (CH₃CN); gradient: 10→100% B over 10 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 7.1-7.6 min, were collected and freeze-dried to afford the desired product 4-4-2 (6.8 mg, 51%): ¹H NMR (400 MHz, CDCl₃) δ 15.83 (s, 1H), 8.11-7.84 (m, 1H), 7.43-7.18 (m, 10H), 5.30 (s, 2H), 5.00-4.67 (m, 2H), 3.95-3.94 (m, 1H), 3.78-3.71 (m, 4H), 3.51-3.47 (m, 1H), 3.27-3.08 (m, 2H), 2.91-2.88 (m, 2H), 2.71-2.39 (m, 12H), 2.27-1.37 (m, 9H), 0.75 (s, 9H), 0.19 (m, 3H), 0.07-0.05 (m, 3H); MS (ESI) m/z 877.44 (M+H).
Aqueous HF (48-50%, 0.2 mL) was added to a solution of the above product 4-4-2 (6.8 mg, 0.0078 mmol, 1.0 equiv) in acetonitrile (0.5 mL) in a polypropylene reaction vessel at 23° C. The resulting mixture was stirred vigorously at 23° C. overnight and poured into aqueous K₂HPO₄(2.5 g dissolved in 20 mL water). The resulting mixture was extracted with EtOAc (30 mL, then 20 mL). The combined organic extracts were dried over anhydrous sodium sulfate, filtered, and concentrated. The residue was used directly in the next step without further purification.
The above crude product was dissolved in MeOH (2 mL) and dioxane (0.5 mL). Pd—C (10 wt %, 2 mg) was added in one portion at 23° C. The reaction vessel was sealed and purged with hydrogen by briefly evacuating the flask followed by flushing with hydrogen gas (1 atm). After stirring at 23° C. for 2 h, the reaction mixture was filtered through a small Celite pad. The filtrate was concentrated. The residue was purified by a preparative reverse phase HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-γ 100A column [10 μm, 150×21.20 mm; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 3.0 mL (0.05 N HCl/water and MeCN, 1:1); gradient: 0→35% B over 10 min; mass-directed fraction collection]. Fractions containing the desired product, eluting at 8.2-8.6 min, were collected and freeze-dried to yield Compound 146 (0.98 mg, 1:1 diastereomers): ¹H NMR (400 MHz, CD₃OD) δ 8.03 (s, 0.5H), 8.01 (s, 0.5H), 4.08 (s, 1H), 4.08-4.03 (m, 1H), 3.80 (s, 3H), 3.58-3.55 (m, 1H), 3.26-3.24 (m, 1H), 3.20-3.12 (m, 1H), 3.03-2.92 (m, 11H), 2.34-2.31 (m, 1H), 2.20-2.10 (m, 2H), 2.03-1.1.97 (m, 2H), 1.92-1.81 (m, 2H), 1.67-1.61 (m, 2H); Fractions containing the desired product, eluting at 8.6-9.1 min, were collected and freeze-dried to yield Compound 4-5-2 (1.16 mg, single enantiomer): ¹H NMR (400 MHz, CD₃OD) δ 8.01 (s, 1H), 4.08 (s, 1H), 4.08-4.04 (m, 1H), 3.80 (s, 3H), 3.58-3.55 (m, 1H), 3.28-3.24 (m, 1H), 3.20-3.12 (m, 1H), 3.03-2.92 (m, 11H), 2.35-2.32 (m, 1H), 2.21-2.10 (m, 2H), 2.00-1.1.97 (m, 2H), 1.92-1.82 (m, 2H), 1.67-1.61 (m, 2H); MS (ESI) m/z 585.27 (M+H).
Compounds 147 and 148 were prepared similarly to Compound 146 using enatiomerically pure pipecolinic acids.
Compound 147. ¹H NMR (400 MHz, CD₃OD) δ 8.01 (s, 1H), 4.10 (s, 1H), 4.12-4.08 (m, 1H), 3.80 (s, 3H), 3.58-3.55 (m, 1H), 3.29-3.24 (m, 1H), 3.22-3.15 (m, 1H), 3.04-2.93 (m, 11H), 2.34-2.31 (m, 1H), 2.23-2.18 (m, 1H), 2.12 (dd, J=13.7, 16.0 Hz, 1H), 1.99-1.97 (m, 2H), 1.92-1.78 (m, 2H), 1.72-1.56 (m, 2H); MS (ESI) m/z 585.52 (M+H).
Compound 148. ¹H NMR (400 MHz, CD₃OD) δ 8.00 (s, 1H), 4.09 (s, 1H), 4.09-4.06 (m, 1H), 3.80 (s, 3H), 3.58-3.55 (m, 1H), 3.29-3.24 (m, 1H), 3.22-3.15 (m, 1H), 3.04-2.92 (m, 11H), 2.35-2.32 (m, 1H), 2.23-2.17 (m, 1H), 2.13 (dd, J=13.7, 16.0 Hz, 1H), 2.00-1.96 (m, 2H), 1.92-1.78 (m, 2H), 1.72-1.57 (m, 2H); MS (ESI) m/z 585.56 (M+H).
Compound 144.
A solution of 1-methylazepane-2-carbonyl chloride (HCl salt) in DCM (0.4 M, 120 μL, 0.048 mmol, 1.2 equiv) was added to a solution of aniline 2-6 (30 mg, 0.040 mmol, 1.0 equiv) in THF (1 mL). The resulting light orange solution was stirred at rt for 10 min, and more acid chloride (0.4 M/DCM, 120 μL, 0.048 mmol, 1.2 equiv) was added. The resulting mixture was stirred for 30 min and diluted with brine and pH 7 phosphate buffer (1:1, 20 mL). The resulting mixture was extracted with EtOAc (50 mL). The organic phase was separated, dried (Na₂SO₄), filtered and concentrated. The residue was purified by a Preparative reverse phase HPLC on a Waters Autopurification system using a Sunfire Prep C18 OBD column [5 μm, 19×50 mm; flow rate, 20 mL/min; Solvent A: H₂O with 0.1% HCO₂H; Solvent B: CH₃CN with 0.1% HCO₂H; injection volume: 4.0 mL (CH₃CN); gradient: 20→100% B over 8 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 6.3-9.0 min, were collected and freeze-dried to afford the desired product 4-1-4 (20 mg, 84%): ¹H NMR (400 MHz, CDCl₃) δ 15.96 (s, 1H), 8.44 (s, 1H), 7.50-7.44 (m, 3H), 7.39-7.29 (m, 7H), 5.35 (s, 2H), 4.89, 4.80 (ABq, J=10.4 Hz, 2H), 3.98 4.80 (d, J=10.4 Hz, 1H), 3.86 (s, 3H), 3.32 (dd, J=4.9, 16.5 Hz, 1H), 3.09 (br s, 1H), 2.99-2.92 (m, 1H), 2.80-2.70 (m, 2H), 2.57-2.41 (m, 8H), 2.35-2.13 (m, 5H), 2.02-1.85 (m, 2H), 1.63-1.41 (m, 6H), 0.81 (s, 9H), 0.27 (s, 3H), 0.12 (s, 3H); MS (ESI) m/z 891.74 (M+H).
Aqueous HF (48-50%, 0.3 mL) was added to a solution of the above product 4-1-4 (20 mg, 0.022 mmol, 1.0 equiv) in acetonitrile (0.6 mL) in a polypropylene reaction vessel at 23° C. The resulting mixture was stirred vigorously at 23° C. overnight and poured into aqueous K₂HPO₄(3.6 g dissolved in 25 mL water). The resulting mixture was extracted with EtOAc (30 mL, then 20 mL). The combined organic extracts were dried over anhydrous sodium sulfate, filtered, and concentrated. The residue was used directly in the next step without further purification.
The above crude product was dissolved in MeOH (1 mL) and HCl/MeOH (0.5 N, 88 μL, 2.0 equiv). Pd—C (10 wt %, 8 mg) was added in one portion at 23° C. The reaction vessel was sealed and purged with hydrogen by briefly evacuating the flask followed by flushing with hydrogen gas (1 atm). After stirring at 23° C. for 2 h 25 min, the reaction mixture was filtered through a small Celite pad. The filtrate was concentrated. The residue was purified by a preparative reverse phase HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-γ 100A column [10 μm, 150×21.20 mm; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 3.0 mL (0.05 N HCl/water and MeCN, 1:1); gradient: 5→35% B over 10 min; mass-directed fraction collection]. Fractions containing the desired product, eluting at 8.0-8.4 min, were collected and freeze-dried to yield Compound 144 (2.52 mg, 17% over 2 steps): ¹H NMR (400 MHz, CD₃OD) δ 7.95 (s, 1H), 4.28 (dd, J=3.7, 6.4 Hz, 1H), 4.08 (s, 1H), 3.80 (s, 3H), 3.50 (t, J=5.0 Hz, 2H), 3.29-3.24 (m, 1H), 3.08-2.94 (m, 11H), 2.29-2.10 (m, 4H), 2.02-1.98 (m, 2H), 1.86-1.82 (m, 2H), 1.74-1.70 (m, 2H), 1.67-1.57 (m, 1H); MS (ESI) m/z 599.48 (M+H).

Example 5

Synthesis of Certain Compounds of Formula II, wherein Y is —NH—C(O)-(saturated heterocyclyl). Scheme 5 depicts the synthesis of still other compounds of Formula II, wherein Y is —NH—C(O)-(saturated heterocyclyl).
In Scheme 5, R^Arepresents hydrogen, (C₁-C₅)alkyl, —(C₀-C₅) alkylene-carbocyclyl, or —(C₀-C₅)alkylene-heterocyclyl. For all of the compounds made by Scheme 5 and described below, R^Zis hydrogen and R^Xand R^Yare taken together with the carbon and nitrogen atoms to which they are respectively bound to form an optionally substituted 4-7 membered saturated heterocyclyl. It will be readily apparent to those of skill in the art, however, that this Scheme 5 will also be useful to synthesize compounds where R^X, R^Yand R^Zare R², R^5aand R^5b, respectively, as defined in structural formula (I).
Compound 149.
A solution of (R)-N-(carbobenzoxy)prolyl chloride in DCM (1.0 M, 69 μL, 0.069 mmol, 1.2 equiv) was added to a solution of aniline 2-6 (43.5 mg, 0.058 mmol, 1.0 equiv) in THF (1 mL). The resulting light orange solution was stirred at rt for 3 h, diluted with brine (20 mL). The resulting mixture was extracted with DCM (2×25 mL). The combined organic extracts were dried (Na₂SO₄), filtered and concentrated to yield the crude product 5-1-1: MS (ESI) m/z 983.58 (M+H).
Aqueous HF (48-50%, 0.2 mL) was added to a solution of the above crude product 5-1-1 in acetonitrile (0.5 mL) in a polypropylene reaction vessel at 23° C. The resulting mixture was stirred vigorously at 23° C. overnight and poured into aqueous K₂HPO₄(3.6 g dissolved in 30 mL water). The resulting mixture was extracted with EtOAc (40 mL, then 2×15 mL). The combined organic extracts were dried over anhydrous sodium sulfate, filtered, and concentrated. The residue was used directly in the next step without further purification.
The above crude product was dissolved in MeOH (2 mL) and dioxane (0.4 mL). Pd—C (10 wt %, 20 mg) was added in one portion at 23° C. The reaction vessel was sealed and purged with hydrogen by briefly evacuating the flask followed by flushing with hydrogen gas (1 atm). After stirring at 23° C. for 3 h, the resulting reaction mixture was filtered through a small Celite pad. The filtrate was concentrated. The residue was purified by a preparative reverse phase HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-γ 100A column [10 μm, 150×21.20 mm; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 3.0 mL (0.05 N HCl/water and MeCN, 1:1); gradient: 0→35% B over 10 min; mass-directed fraction collection]. Fractions containing the desired product, eluting at 7.5-8.4 min, were collected and freeze-dried to yield Compound 149 (7.9 mg, 49% yield over 3 steps): ¹H NMR (400 MHz, CD₃OD) δ 8.03 (s, 1H), 4.58 (dd, J=6.9, 8.7 Hz, 1H), 4.10 (s, 1H), 3.79 (s, 3H), 3.50-3.39 (m, 2H), 3.28-3.23 (m, 1H), 3.04-2.95 (m, 8H), 2.62-2.53 (m, 1H), 2.23-2.03 (m, 5H), 1.67-1.57 (m, 1H); MS (ESI) m/z 557.33 (M+H).
Compound 151. HCHO (14.4 μL, 0.052 mmol, 6.0 equiv), TEA (6.1 μL, 0.044 mmol, 3.0 equiv) and sodium triacetoxyborohydride (9.2 mg, 0.044 mmol, 3.0 equiv) were added sequentially to a solution of Compound 149 (9.1 mg, 0.014 mmol, 1.0 equiv) in DMF (0.3 mL) at 23° C. After stirring for 15 min, the reaction mixture was diluted with 0.05 N HCl/water, and purified by a preparative reverse phase HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10 μ RP-γ 100A column [10 μm, 150×21.20 mm; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 3.0 mL (0.05 N HCl/water and MeCN, 1:1); gradient: 0→35% B over 10 min; mass-directed fraction collection]. Fractions containing the desired product, eluting at 8.0-8.8 min, were collected and freeze-dried to yield Compound 5-3-1 mixed with a byproduct (MS (ESI) m/z 601.35 (M+H)). The product was dissolved in MeOH (0.5 mL). Then conc. HCl (0.5 mL) was added. The resulting mixture was stirred at rt for 40 min, and concentrated. The residue was diluted with MeCN (1 mL) and freeze-dried. The residue was re-purified by a preparative reverse phase HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-γ 100A column (same method as before) to afford the desired product Compound 151(2.69 mg, 29% yield): ¹H NMR (400 MHz, CD₃OD) δ 8.03 (s, 1H), 4.37 (t, J=7.8 Hz, 1H), 4.08 (s, 1H), 3.80 (s, 3H), 3.78-3.76 (m, 1H), 3.28-3.24 (m, 2H), 3.03-2.94 (m, 11H), 2.75-2.68 (m, 1H), 2.30-2.07 (m, 5H), 1.67-1.57 (m, 1H); MS (ESI) m/z 571.55 (M+H).
Compound 150. Compound 150 was prepared similarly to Compound 149. ¹H NMR (400 MHz, CD₃OD) δ 8.12 (s, 1H), 5.28 (dd, J=7.3, 9.2 Hz, 1H), 4.21-4.14 (m, 1H), 4.09 (s, 1H), 4.07-4.00 (m, 1H), 3.81 (s, 3H), 3.28-3.24 (m, 1H), 3.04-2.90 (m, 9H), 2.71-2.62 (m, 1H), 2.23-2.09 (m, 2H), 1.66-1.57 (m, 1H); MS (ESI) m/z 543.23 (M+H).
Compound 152. Compound 152 was prepared similarly to Compound 151. ¹H NMR (400 MHz, CD₃OD) δ 8.10 (s, 1H), 5.18 (t, J=9.2 Hz, 1H), 4.21-4.04 (m, 3H), 3.80 (s, 3H), 3.26-3.25 (m, 1H), 3.05-2.87 (m, 12H), 2.69-2.59 (m, 1H), 2.22-2.10 (m, 2H), 1.68-1.57 (m, 1H); MS (ESI) m/z 557.35 (M+H).

Example 6

Synthesis of Certain Compounds of Formula II, wherein Y is —NH—S(O)_m—(C₁-C₆alkyl), —NH—S(O)_m—(C₁-C₄alkylene)-N(R²)(R³), —NH—S(O)_m—N(R²)(R⁴), —NH—S(O)_m-heterocyclyl, —NH—S(O)_m-carbocyclyl, and —NH—S(O)_m—(C₁-C₄) alkylene-carbocyclyl

In Scheme 6, R^Brepresents —(C₁-C₆alkyl), —(C₁-C₄alkylene)-N(R²)(R³), —N(R²)(R⁴), -heterocyclyl, -carbocyclyl, or —(C₁-C₄) alkylene-carbocyclyl.
Compound 153. Compound 2-6 (28 mg, 0.038 mmol) was dissolved in CH₂Cl₂(0.2 mL). Benzenesulfonyl chloride (14.4 μL, 0.11 mmol, 3 eq) and pyridine (15.3 μL, 0.19 mmol, 5 eq) were added. The resulting mixture was stirred at rt and the reaction was monitored by LC-MS. The reaction mixture was diluted with EtOAc after SM was completely consumed. The organic solution was washed with water, 1N HCl and brine, dried with Na₂SO₄and concentrated to give crude 6-1, where R is benzene (6-1-1). Preparative reverse phase HPLC purification on a Waters Autopurification system using a Sunfire Prep C18 OBD column [5 μm, 19×50 mm; flow rate, 20 mL/min; Solvent A: H₂O with 0.1% HCO₂H; Solvent B: CH₃CN with 0.1% HCO₂H; injection volume: 4.0 mL (CH₃CN); gradient: 80→100% B over 15 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 7.50-8.95 min, were collected and concentrated on a RotaVap at rt to remove most of the acetonitrile. The resulting mostly aqueous solution was extracted with EtOAc. The combined EtOAc extracts were dried (Na₂SO₄) and concentrated to give pure 6-1-1.
In a plastic vial, 6-1-1 was dissolved in CH₃CN (1 mL). Aqueous HF (48%, 0.25 mL) was added. After stirred at rt for 16 h, the reaction mixture was poured into aqueous solution (12.5 mL) of K₂HPO₄(1.75 g). The resulting mixture was extracted three times with EtOAc. The combined organic phases were washed with brine, dried, concentrated to give crude product 6-2-1.
The crude 6-2-1 was dissolved in 0.5 N HCl in MeOH (155 μL, 2 eq). The excess volatiles were evaporated. The pre-formed HCl salt was re-dissolved in MeOH (2.0 mL) and to the resulting solution was added palladium on carbon (10% wt, 9.0 mg, 30% w/w). The reaction flask was briefly evacuated and re-filled with hydrogen. The reaction mixture was stirred at rt and monitored by LC-MS. After SM was consumed, the mixture was filtered through a small pad of Celite. The filtrate was concentrated to give crude Comopund 153, which was purified by HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-γ 100 R column [30×21.20 mm, 10 micron; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 4.0 mL (0.05 N HCl/water); gradient: 15→60% B over 15 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 13.50-14.65 min, were collected and freeze-dried to give product as a yellow solid: ¹H NMR (400 MHz, CD₃OD) δ 7.78 (d, J=7.8 Hz, 2H), 7.56 (t, J=7.8 Hz, 1H), 7.45 (t, J=7.8 Hz, 2H), 7.38 (s, 1H), 4.02 (s, 1H), 3.76 (s, 3H), 3.30-3.15 (m, 1H), 3.10-2.90 (m, 8H), 2.18-2.01 (m, 2H), 1.62-1.52 (m, 1H); MS (ESI) m/z 600.2 (M+H), calcd for C₂₈H₃₀N₃O₁₀S 600.16.
Compound 154. Compound 154 was obtained by the procedure of Compound 153 employing methanesulfonyl chloride. Crude product was purified by HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-γ 100 R column [30×21.20 mm, 10 micron; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 4.0 mL (0.05 N HCl/water); gradient: 15→60% B over 15 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 8.24-9.25 min, were collected and freeze-dried to give product as a yellow solid: ¹H NMR (400 MHz, CD₃OD) δ 7.38 (s, 1H), 4.08 (s, 1H), 3.79 (s, 3H), 3.30-3.15 (m, 1H), 3.10-2.90 (m, 11H), 2.20-2.05 (m, 2H), 1.66-1.55 (m, 1H); MS (ESI) m/z 538.5 (M+H), calcd for C₂₃H₂₈N₃O₁₀S 538.14.
Compound 155. Compound 155 was obtained by the procedure of Compound 153 employing trifluoromethanesulfonic anhydride. Crude product was purified by HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ, RP-γ 100 R column [30×21.20 mm, 10 micron; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 4.0 mL (0.05 N HCl/water); gradient: 20→70% B over 15 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 7.70-8.58 min, were collected and freeze-dried to give product as a yellow solid: ¹H NMR (400 MHz, CD₃OD) δ 7.28 (s, 1H), 4.08 (s, 1H), 3.79 (s, 3H), 3.30-3.15 (m, 1H), 3.10-2.90 (m, 8H), 2.20-2.10 (m, 2H), 1.66-1.55 (m, 1H); MS (ESI) m/z 592.4 (M+H), calcd for C₂₃H₂₅F₃N₃O₁₀S 592.11.
Compound 156. Compound 156 was obtained by the procedure of Compound 153 employing 3-methoxybenzenesulfonyl chloride. Crude product was purified by HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-γ 100 R column [30×21.20 mm, 10 micron; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 4.0 mL (0.05 N HCl/water); gradient: 15→60% B over 15 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 11.85-12.95 min, were collected and freeze-dried to give product as a yellow solid: ¹H NMR (400 MHz, CD₃OD) δ 7.40-7.30 (m, 4H), 7.10 (br s, 1H), 4.08 (s, 1H), 3.76 (s, 6H), 3.25-3.10 (m, 1H), 3.00-2.85 (m, 8H), 2.18-2.00 (m, 2H), 1.66-1.55 (m, 1H); MS (ESI) m/z 630.4 (M+H), calcd for C₂₉H₃₂N₃O₁₁S 630.17.
Compound 157. Compound 157 was obtained by the procedure of Compound 153 employing 2-fluorobenzenesulfonyl chloride. Crude product was purified by HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ, RP-γ 100 R column [30×21.20 mm, 10 micron; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 4.0 mL (0.05 N HCl/water); gradient: 15→60% B over 15 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 11.84-12.74 min, were collected and freeze-dried to give product as a yellow solid: ¹H NMR (400 MHz, CD₃OD) δ 7.77 (t, J=7.3 Hz, 1H), 7.65-7.56 (m 1H), 7.33 (s, 1H), 7.26-7.20 (m, 2H), 4.06 (s, 1H), 3.74 (s, 3H), 3.22-3.12 (m, 1H), 3.06-2.85 (m, 8H), 2.20-2.00 (m, 2H), 1.66-1.55 (m, 1H); MS (ESI) m/z 618.4 (M+H), calcd for C₂₈H₂₉FN₃O₁₀S 618.15.
Compound 158. Compound 158 was obtained by the procedure of Compound 153 employing p-nitrobenzenesulfonyl chloride. Crude product was purified by HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-γ 100 R column [30×21.20 mm, 10 micron; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 4.0 mL (0.05 N HCl/water); gradient: 15→60% B over 15 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 11.15-12.05 min, were collected and freeze-dried to give product as a yellow solid: ¹H NMR (400 MHz, CD₃OD) δ 7.88 (d, J=7.8 Hz, 2H), 7.44-7.39 (m 3H), 4.09 (s, 1H), 3.79 (s, 3H), 3.22-3.12 (m, 1H), 3.06-2.85 (m, 8H), 2.20-2.00 (m, 2H), 1.66-1.55 (m, 1H); MS (ESI) m/z 615.4 (M+H), calcd for C₂₈H₃₁N₄O₁₀S 615.17.
Compound 159. Compound 159 was obtained by the procedure of Compound 153 employing 3-fluorobenzenesulfonyl chloride. Crude product was purified by HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-γ 100 R column [30×21.20 mm, 10 micron; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 4.0 mL (0.05 N HCl/water); gradient: 15→60% B over 15 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 14.00-15.10 min, were collected and freeze-dried to give product as a yellow solid: ¹H NMR (400 MHz, CD₃OD) δ 7.60-7.43 (m, 3H), 7.37 (s, 1H), 7.32 (t, J=7.8 Hz, 1H), 4.07 (s, 1H), 3.78 (s, 3H), 3.22-3.12 (m, 1H), 3.08-2.88 (m, 8H), 2.20-2.00 (m, 2H), 1.62-1.52 (m, 1H); MS (ESI) m/z 618.4 (M+H), calcd for C₂₈H₂₉FN₃O₁₀S 618.15.
Compound 160. Compound 160 was obtained by the procedure of Compound 153 employing 4-methylbenzenesulfonyl chloride. Crude product was purified by HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-γ 100 R column [30×21.20 mm, 10 micron; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 4.0 mL (0.05 N HCl/water); gradient: 15→60% B over 15 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 13.80-15.30 min, were collected and freeze-dried to give product as a yellow solid: ¹H NMR (400 MHz, CD₃OD) δ 7.63 (d, J=7.8 Hz, 2H), 7.35 (s, 1H), 7.23 (d, J=7.8 Hz, 2H), 4.06 (s, 1H), 3.74 (s, 3H), 3.25-3.10 (m, 1H), 3.06-2.85 (m, 8H), 2.34 (s, 3H), 2.18-2.00 (m, 2H), 1.60-1.50 (m, 1H); MS (ESI) m/z 614.5 (M+H), calcd for C₂₉H₃₂N₃O₁₀S 614.17.
Compound 161. Compound 161 was obtained by the procedure of Compound 153 employing 4-methoxybenzenesulfonyl chloride. Crude product was purified by HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-γ 100 R column [30×21.20 mm, 10 micron; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 4.0 mL (0.05 N HCl/water); gradient: 15→60% B over 15 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 13.20-15.00 min, were collected and freeze-dried to give product as a yellow solid: ¹H NMR (400 MHz, CD₃OD) δ 7.69 (d, J=7.8 Hz, 2H), 7.36 (s, 1H), 6.93 (d, J=7.8 Hz, 2H), 4.07 (s, 1H), 3.80 (s, 3H), 3.76 (s, 3H), 3.25-3.12 (m, 1H), 3.08-2.85 (m, 8H), 2.18-2.00 (m, 2H), 1.61-1.52 (m, 1H); MS (ESI) m/z 630.4 (M+H), calcd for C₂₉H₃₂N₃O₁₁S 630.17.
Compound 162. Compound 162 was obtained by the procedure of Compound 153 employing 2-nitrobenzenesulfonyl chloride. Crude product was purified by HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-γ 100 R column [30×21.20 mm, 10 micron; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 4.0 mL (0.05 N HCl/water); gradient: 15→60% B over 15 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 13.00-14.50 min, were collected and freeze-dried to give product as a yellow solid: ¹H NMR (400 MHz, CD₃OD) δ 7.62 (d, J=7.8 Hz, 1H), 7.55 (t, J=7.8 Hz, 1H), 7.31 (m, 2H), 7.14 (t, J=7.8 Hz, 1H), 4.08 (s, 1H), 3.78 (s, 3H), 3.22-3.12 (m, 1H), 3.06-2.85 (m, 8H), 2.22-2.00 (m, 2H), 1.61-1.51 (m, 1H); MS (ESI) m/z 615.4 (M+H), calcd for C₂₈H₃₁N₄O₁₀S 615.17.
Compound 163. Compound 163 was obtained by the procedure of Compound 153 employing 3-nitrobenzenesulfonyl chloride. Crude product was purified by HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-γ 100 R column [30×21.20 mm, 10 micron; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 4.0 mL (0.05 N HCl/water); gradient: 15→60% B over 15 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 9.60-11.00 min, were collected and freeze-dried to give product as a yellow solid: ¹H NMR (400 MHz, CD₃OD) δ 7.90 (d, J=7.8 Hz, 1H), 7.83 (s, 1H), 7.67-7.60 (m, 2H), 7.40 (s, 1H), 4.09 (s, 1H), 3.80 (s, 3H), 3.22-3.12 (m, 1H), 3.06-2.85 (m, 8H), 2.22-2.00 (m, 2H), 1.61-1.51 (m, 1H); MS (ESI) m/z 615.4 (M+H), calcd for C₂₈H₃₁N₄O₁₀S 615.17.
Compound 164. Compound 164 was obtained by the procedure of Compound 153 employing 1-methylimidazole-4-sulfonyl chloride. Crude product was purified by HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-γ 100 R column [30×21.20 mm, 10 micron; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 4.0 mL (0.05 N HCl/water); gradient: 15→50% B over 15 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 9.85-11.00 min, were collected and freeze-dried to give product as a yellow solid: ¹H NMR (400 MHz, CD₃OD) δ 8.77 (s, 1H), 7.99 (s, 1H), 7.36 (s, 1H), 4.08 (s, 1H), 3.88 (s, 3H), 3.81 (s, 3H), 3.30-3.22 (m, 1H), 3.06-2.85 (m, 8H), 2.22-2.00 (m, 2H), 1.61-1.51 (m, 1H); MS (ESI) m/z 604.4 (M+H), calcd for C₂₆H₃₀N₅O₁₀S 604.16.
Compound 165. Compound 165 was obtained by the procedure of Compound 153 employing 1-methyl-1H-pyrazole-3-sulfonyl chloride. Crude product was purified by HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-γ 100 R column [30×21.20 mm, 10 micron; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 4.0 mL (0.05 N HCl/water); gradient: 15→50% B over 15 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 11.85-13.00 min, were collected and freeze-dried to give product as a yellow solid: ¹H NMR (400 MHz, CD₃OD) δ 7.64 (d, J=2.3 Hz, 1H), 7.45 (s, 1H), 6.62 (d, J=2.3 Hz, 1H), 4.07 (s, 1H), 3.88 (s, 3H), 3.77 (s, 3H), 3.22-3.14 (m, 1H), 3.06-2.85 (m, 8H), 2.22-2.00 (m, 2H), 1.63-1.53 (m, 1H); MS (ESI) m/z 604.4 (M+H), calcd for C₂₆H₃₀N₅O₁₀S 604.16.
Compound 166. Compound 166 was obtained by the procedure of Compound 153 employing isobutanesulfonyl chloride. Crude product was purified by HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-γ 100 R column [30×21.20 mm, 10 micron; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 4.0 mL (0.05 N HCl/water); gradient: 15→60% B over 15 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 12.80-14.00 min, were collected and freeze-dried to give product as a yellow solid: ¹H NMR (400 MHz, CD₃OD) δ 7.35 (s, 1H), 4.08 (s, 1H), 3.78 (s, 3H), 3.30-3.20 (m, 1H), 3.08-2.90 (m, 10H), 2.30-2.10 (m, 3H), 1.66-1.55 (m, 1H), 1.05 (d, J=6.8 Hz, 6H); MS (ESI) m/z 580.5 (M+H), calcd for C₂₆H₃₄N₃O₁₀S 580.19.
Compound 167. Compound 167 was obtained by the procedure of Compound 153 employing furan-2-sulfonyl chloride. Crude product was purified by HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-γ 100 R column [30×21.20 mm, 10 micron; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 4.0 mL (0.05 N HCl/water); gradient: 15→60% B over 15 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 12.55-13.60 min, were collected and freeze-dried to give product as a yellow solid: ¹H NMR (400 MHz, CD₃OD) δ 7.69 (s, 1H), 7.33 (s, 1H), 6.96 (d, J=3.6 Hz, 1H), 6.51 (t, J=1.8 Hz, 1H), 4.06 (s, 1H), 3.77 (s, 3H), 3.25-3.12 (m, 1H), 3.08-2.85 (m, 8H), 2.18-2.00 (m, 2H), 1.61-1.52 (m, 1H); MS (ESI) m/z 590.4 (M+H), calcd for C₂₆H₂₈N₃O₁₁S 590.14.
Compound 168. Compound 168 was obtained by the procedure of Compound 153 employing phenylmethanesulfonyl chloride. Crude product was purified by HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-γ 100 R column [30×21.20 mm, 10 micron; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 4.0 mL (0.05 N HCl/water); gradient: 15→60% B over 15 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 13.90-15.50 min, were collected and freeze-dried to give product as a yellow solid: ¹H NMR (400 MHz, CD₃OD) δ 7.38-7.34 (m, 2H), 7.28-7.26 (m, 3H), 7.13 (s, 1H), 4.45 (s, 2H), 4.07 (s, 1H), 3.68 (s, 3H), 3.25-3.12 (m, 1H), 3.08-2.85 (m, 8H), 2.18-2.00 (m, 2H), 1.61-1.52 (m, 1H); MS (ESI) m/z 614.5 (M+H), calcd for C₂₉H₃₂N₃O₁₀S 614.17.
Compound 169. Compound 169 was obtained by the procedure of Compound 153 employing ethanesulfonyl chloride. Crude product was purified by HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ, RP-γ 100 R column [30×21.20 mm, 10 micron; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 4.0 mL (0.05 N HCl/water); gradient: 15→50% B over 15 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 12.05-13.20 min, were collected and freeze-dried to give product as a yellow solid: ¹H NMR (400 MHz, CD₃OD) δ 7.36 (s, 1H), 4.08 (s, 1H), 3.78 (s, 3H), 3.30-3.20 (m, 1H), 3.10-2.85 (m, 10H), 2.22-2.05 (m, 2H), 1.65-1.55 (m, 1H), 1.36 (t, J=7.3 Hz, 3H); MS (ESI) m/z 552.4 (M+H), calcd for C₂₄H₃₀N₃O₁₀S 552.16.
Compound 170. Compound 170 was obtained by the procedure of Compound 153 employing 1-propanesulfonyl chloride. Crude product was purified by HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-γ 100 R column [30×21.20 mm, 10 micron; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 4.0 mL (0.05 N HCl/water); gradient: 15→60% B over 15 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 11.75-12.80 min, were collected and freeze-dried to give product as a yellow solid: ¹H NMR (400 MHz, CD₃OD) δ 7.35 (s, 1H), 4.08 (s, 1H), 3.78 (s, 3H), 3.30-3.20 (m, 1H), 3.10-2.85 (m, 10H), 2.22-2.05 (m, 2H), 1.88-1.82 (m, 2H), 1.65-1.55 (m, 1H), 1.00 (t, J=7.3 Hz, 3H); MS (ESI) m/z 566.5 (M+H), calcd for C₂₅H₃₂N₃O₁₀S 566.17.
Compound 171. Compound 171 was obtained by the procedure of Compound 153 employing 1-butanesulfonyl chloride. Crude product was purified by HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-γ 100 R column [30×21.20 mm, 10 micron; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 4.0 mL (0.05 N HCl/water); gradient: 15→60% B over 15 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 13.05-13.95 min, were collected and freeze-dried to give product as a yellow solid: ¹H NMR (400 MHz, CD₃OD) δ 7.36 (s, 1H), 4.07 (s, 1H), 3.78 (s, 3H), 3.30-3.20 (m, 1H), 3.10-2.85 (m, 10H), 2.22-2.05 (m, 2H), 1.83-1.78 (m, 2H), 1.65-1.55 (m, 1H), 1.44-1.38 (m, 2H), 0.90 (t, J=7.3 Hz, 3H); MS (ESI) m/z 580.5 (M+H), calcd for C₂₆H₃₄N₃O₁₀S 580.19.
Compound 172. Compound 172 was obtained by the procedure of Compound 153 employing 1-hexanesulfonyl chloride. Crude product was purified by HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-γ 100 R column [30×21.20 mm, 10 micron; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 4.0 mL (0.05 N HCl/water); gradient: 15→65% B over 15 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 14.85-15.30 min, were collected and freeze-dried to give product as a yellow solid: ¹H NMR (400 MHz, CD₃OD) δ 7.37 (s, 1H), 4.08 (s, 1H), 3.79 (s, 3H), 3.30-3.20 (m, 1H), 3.10-2.85 (m, 10H), 2.22-2.05 (m, 2H), 1.85-1.78 (m, 2H), 1.65-1.55 (m, 1H), 1.44-1.25 (m, 6H), 0.88 (t, J=7.3 Hz, 3H); MS (ESI) m/z 608.5 (M+H), calcd for C₂₈H₃₈N₃O₁₀S 608.22.
Compound 173. Compound 173 was obtained by the procedure of Compound 153 employing 2,2,2-trifluoroethanesulfonyl chloride. Crude product was purified by HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-γ 100 R column [30×21.20 mm, 10 micron; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 4.0 mL (0.05 N HCl/water); gradient: 15→50% B over 15 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 14.10-15.20 min, were collected and freeze-dried to give product as a yellow solid: ¹H NMR (400 MHz, CD₃OD) δ 7.29 (s, 1H), 4.18 (q, J=9.6 Hz, 2H), 4.08 (s, 1H), 3.79 (s, 3H), 3.30-3.20 (m, 1H), 3.10-2.85 (m, 8H), 2.22-2.05 (m, 2H), 1.65-1.55 (m, 1H); MS (ESI) m/z 606.4 (M+H), calcd for C₂₄H₂₇F₃N₃O₁₀S 606.13.
Compound 174. Compound 174 was obtained by the procedure of Compound 153 employing dimethylsulfamoyl chloride. Crude product was purified by HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-γ 100 R column [30×21.20 mm, 10 micron; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 4.0 mL (0.05 N HCl/water); gradient: 20→60% B over 15 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 10.00-11.10 min, were collected and freeze-dried to give product as a yellow solid: ¹H NMR (400 MHz, CD₃OD) δ 7.41 (s, 1H), 4.07 (s, 1H), 3.78 (s, 3H), 3.30-3.20 (m, 1H), 3.10-2.85 (m, 8H), 2.77 (s, 6H), 2.22-2.05 (m, 2H), 1.65-1.55 (m, 1H); MS (ESI) m/z 567.4 (M+H), calcd for C₂₄H₃₁N₄O₁₀S 567.17.
Compound 175. Compound 175 was obtained by the procedure of Compound 153 employing DMF as solvent. Crude product was purified by HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-γ 100 R column [30×21.20 mm, 10 micron; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 4.0 mL (0.05 N HCl/water); gradient: 5→30% B over 15 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 11.90-13.05 min, were collected and freeze-dried to give product as a yellow solid: ¹H NMR (400 MHz, CD₃OD) δ 8.53 (s, 1H), 7.35 (s, 1H), 4.10 (s, 1H), 3.85 (s, 3H), 3.43 (s, 3H), 3.32 (s, 3H), 3.30-3.20 (m, 1H), 3.10-2.85 (m, 8H), 2.26-2.10 (m, 2H), 1.65-1.55 (m, 1H); MS (ESI) m/z 515.4 (M+H), calcd for C₂₅H₃₁N₄O₈515.21.
Compound 176. Compound 176 (9.0 mg, 0.0015 mmol) was dissolved in MeOH (2.0 mL) and to the resulting solution was added palladium on carbon (10% wt, 5.0 mg). The reaction flask was briefly evacuated and re-filled with hydrogen. Formaldehyde (0.1 mL, 1.34 mmol) was then added. The reaction mixture was stirred at rt and monitored by LC-MS. After SM was consumed, the mixture was filtered through a small pad of Celite. The filtrate was concentrated to give the crude product, which was purified by HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-γ 100 R column [30×21.20 mm, 10 micron; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 4.0 mL (0.05 N HCl/water); gradient: 15→60% B over 15 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 12.60-13.25 min, were collected and freeze-dried to give product 6-3-24 as a yellow solid: ¹H NMR (400 MHz, CD₃OD) δ 7.66 (s, 1H), 7.58-7.45 (m, 3H), 7.40 (s, 1H), 4.06 (s, 1H), 3.79 (s, 3H), 3.25-3.15 (m, 1H), 3.12 (s, 6H), 3.06-2.90 (m, 8H), 2.26-2.10 (m, 2H), 1.65-1.55 (m, 1H) MS (ESI) m/z 643.5 (M+H), calcd for C₃₀H₃₅N₄O₈S 643.20.
Compound 177. Compound 177 was obtained by the procedure of Compound 153 employing pyridine-2-sulfonyl chloride: ¹H NMR (400 MHz, CD₃OD) δ 8.60 (d, J=4.6 Hz, 1H), 7.95-8.10 (m, 2H), 7.65-7.75 (m, 1H), 7.48 (s, 1H), 4.04 (s, 1H), 3.79 (s, 3H), 2.75-3.50 (m, 9H), 2.00-2.20 (m, 2H), 1.52-1.70 (m, 1H); MS (ESI) m/z 601.1 (M+H), calcd for C₂₇H₂₉N₄O₁₀S 601.16.
Compound 178. Compound 178 was obtained by the procedure of Compound 153 employing pyridine-3-sulfonyl chloride: ¹H NMR (400 MHz, CD₃OD) δ 7.35 (s, 1H), 4.08 (s, 1H), 3.80 (s, 3H), 2.80-3.90 (m, 14H), 1.90-2.40 (m, 5H), 1.55-1.80 (m, 2H); MS (ESI) m/z 607.3 (M+H), calcd for C₂₇H₃₅N₄O₁₀S 607.21.
Compound 179.
To a solution of 2-6 (38 mg, 0.05 mmol) in dichloroethane (1 mL) was added pyridine (6.1 μL, 0.075 mmol, 1.5 equiv) and 2-chloroethanesulfonyl chloride (6.9 μL, 0.65 mmol, 1.3 equiv). After 18 h, the solution was heated to 45° C. for 2 h, and then was cooled to ambient temperature. Additional pyridine (12.2 μL, 0.15 mmol, 3 equiv) and 2-chloroethanesulfonyl chloride (15.7 μL, 0.15 mmol, 3 equiv) were added and the reaction was heated to 45° C. for 21 h. Pyrrolidine (41 μL, 0.500 mmol, 10 equiv) was added to the reaction mixture, and the reaction was heated to 45° C. After four hours, the reaction was cooled, additional pyrrolidine was added (82 μL, 1.00 mmol, 20 equiv), and the reaction was heated to 45° C. for 24 h. The reaction mixture was poured into aqueous pH 7 phosphate buffer (3 mL) and brine (2 mL), and the mixture was extracted with EtOAc (2×10 mL). The combined organic extracts were dried (Na₂SO₄), filtered, and concentrated to yield an oil.
Preparative reverse phase HPLC purification of this crude mixture was performed on a Waters Autopurification system using a Sunfire Prep C18 OBD column [5 μm, 19×50 mm; flow rate, 20 mL/min; Solvent A: H₂O with 0.1% HCO₂H; Solvent B: CH₃CN with 0.1% HCO₂H; injection volume: 4× 3.6-4.2 mL (CH3CN); gradient: 88→100% B over 12 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 3.0-3.4 and 12.6-13.2 min, were collected and lyophilized to give 5.3 mg of 6-1-27a (12%) and 2.8 mg of 6-1-27b (6%), respectively.
6-1-27a: ¹H NMR (400 MHz, CDCl₃) δ 15.9 (s, 1H), 8.18 (s, 1H), 7.52-7.30 (m, 11H), 5.41-5.31 (m, 2H), 4.95 (d, J=10.4 Hz, 1H), 4.82 (d, J=10.4 Hz, 1H), 3.92 (d, J=10.4 Hz, 1H), 3.86 (s, 3H), 3.37-3.30 (m, 3H), 3.21-3.09 (m, 2H), 3.05-2.94 (m, 1H), 2.88-2.74 (m, 4H), 2.62-2.52 (m, 1H), 2.55-2.42 (m, 6H), 2.38-2.30 (m, 1H), 2.20-2.14 (m, 1H), 1.91-1.78 (m, 4H), 0.84 (s, 9H), 0.30 (s, 3H), 0.15 (s, 3H); MS (ESI) m/z 913.69 (M+H).
To a solution of 6-1-27a (5.3 mg, 0.0058 mmol, 1 equiv) in a plastic vial in acetonitrile (1.0 mL) was added an aqueous solution of hydrogen fluoride (50%, 250 μL). After 20 h, the reaction solution was diluted with an aqueous solution of K₂HPO₄(3.2 g in 30 mL) and extracted with EtOAc (2×30 mL). The combined organic layers were dried (Na₂SO₄), filtered, and concentrated to yield the crude product. Palladium on carbon (10%, 7 mg) was added to a solution of this crude oil in dioxane:methanol (1:1, 1 mL). The flask was fitted with a septum and evacuated and back-filled three times with hydrogen gas. Hydrogen gas was bubbled through the reaction solution for three minutes, and the reaction mixture was stirred under an atmosphere (balloon) of hydrogen gas for 2 h. The reaction mixture was filtered through Celite to remove the palladium catalyst and concentrated under reduced pressure. Preparative reverse phase HPLC purification of the resulting oil was performed on a Waters Autopurification system using a Polymerx™ 10μ RP-γ 100 R column [30×21.20 mm, 10 micron, solvent A: 0.05N HCl in water, solvent B: CH₃CN; injection volume: 4.8 mL (0.05N HCl in water); gradient elution with 20→80% B over 15 min, then held at 100% for 5 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 7.45-8.5 min, were collected and freeze-dried to yield 0.65 mg of Compound 179 (18%): ¹H NMR (400 MHz, CD₃OD) 8 7.31 (s, 1H), 4.09 (s, 1H), 3.81-3.65 (m, 6H), 3.60-3.55 (m, 1H), 3.21-2.90 (m, 14H), 2.25-2.00 (m, 5H), 1.72-1.55 (m, 1H); MS (ESI) m/z 621.38 (M+H).

Example 7

Syntheis of Compounds of Formula II, wherein Y is —NH(R³), and R³is Selected from —(C₁-C₆)alkyl, —(C₁-C₆) alkylene-carbocyclyl, and —(C₁-C₆)alkylene-heterocyclyl

In Scheme 7,—CH₂—R^Crepresents R³.
Compound 180. Compound 2-6 (20 mg, 0.026 mmol) was dissolved in 1,2-dichloroethane (1.0 mL). Propionaldehyde (2.9 μL, 0.040 mmol, 1.5 eq) was added, followed by acetic acid (7.6 μL, 0.13 mmol, 5 eq). After stirred at rt for 1 h, sodium triacetoxyborohydride (16.9 mg, 0.080 mmol, 3 eq) was added. Stirring was continued for another 2 h. The reaction mixture was poured into pH=7 buffer and sat. NaHCO₃solution, extracted three times with EtOAc. The combined organic extracts were washed with brine, dried over Na₂SO₄, and concentrated to give crude 7-1, wherein —CH₂-R^Ais n-propyl (7-1-1), which was used directly for the next step without purification.
In a plastic vial, 7-1-1 was dissolved in CH₃CN (1 mL). Aqueous HF (48%, 0.25 mL) was added. After stirred at rt for 16 h, the reaction mixture was poured into aqueous solution (12.5 mL) of K₂HPO₄(1.75 g). The resulting mixture was extracted three times with CH₂Cl₂. The combined organic phases were washed with brine, dried, concentrated to give crude 7-2, wherein —CH₂—R^Ais n-propyl (7-2-1).
The crude 7-2-1 was dissolved in 0.5 N HCl in MeOH (105 μL, 2 eq). The excess volatiles were evaporated. The pre-formed HCl salt was re-dissolved in MeOH (2.0 mL) and to the resulting solution was added palladium on carbon (10% wt, 7.0 mg, 30% w/w). The reaction flask was briefly evacuated and re-filled with hydrogen. The reaction mixture was stirred at rt and monitored by LC-MS. After SM was consumed, the mixture was filtered through a small pad of Celite. The filtrate was concentrated to give the crude product, which was purified by HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-γ 100 R column [30×21.20 mm, 10 micron; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 4.0 mL (0.05 N HCl/water); gradient: 15→60% B over 15 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 6.80-7.70 min, were collected and freeze-dried to give Compound 180 as a yellow solid: ¹H NMR (400 MHz, CD₃OD) δ 7.30 (s, 1H), 4.10 (s, 1H), 3.86 (s, 3H), 3.40-3.25 (m, 3H), 3.10-2.90 (m, 8H), 2.26-2.16 (m, 2H), 1.85-1.75 (m, 2H), 1.62-1.52 (m, 1H), 1.06 (t, J=7.3 Hz, 3H); MS (ESI) m/z 502.4 (M+H), calcd for C₂₅H₃₂N₃O₈502.21.
Compound 181. Compound 181 was obtained by the procedure of Compound 180 employing isovaleraldehyde. Crude product was purified by HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-γ 100 R column [30×21.20 mm, 10 micron; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 4.0 mL (0.05 N HCl/water); gradient: 15→50% B over 15 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 10.40-11.75 min, were collected and freeze-dried to give product as a yellow solid: ¹H NMR (400 MHz, CD₃OD) δ 7.38 (s, 1H), 4.10 (s, 1H), 3.87 (s, 3H), 3.50-3.40 (m, 2H), 3.35-3.30 (m, 1H), 3.10-2.90 (m, 8H), 2.26-2.16 (m, 2H), 1.80-1.58 (m, 4H), 0.98 (d, J=6.4 Hz, 6H); MS (ESI) m/z 530.4 (M+H), calcd for C₂₇H₃₆N₃O₈530.24.
Compound 182. Compound 182 was obtained by the procedure of Compound 180 employing 2-methylbutyraldehyde. Crude product was purified by HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-γ 100 R column [30×21.20 mm, 10 micron; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 4.0 mL (0.05 N HCl/water); gradient: 15→50% B over 15 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 11.80-12.90 min, were collected and freeze-dried to give product as a yellow solid: ¹H NMR (400 MHz, CD₃OD) δ 7.37 (s, 1H), 4.10 (s, 1H), 3.86 (s, 3H), 3.40-3.20 (m, 3H), 3.10-2.90 (m, 8H), 2.26-2.16 (m, 2H), 1.95-1.85 (m, 1H), 1.70-1.55 (m, 2H), 1.40-1.30 (m, 1H), 1.12 (d, J=6.4 Hz, 3H), 0.98 (t, J=7.3 Hz, 3H); MS (ESI) m/z 530.4 (M+H), calcd for C₂₇H₃₆N₃O₈530.24.
Compound 183. Compound 183 was obtained by the procedure of Compound 180 employing cyclopropanecarboxaldehyde. Crude product was purified by HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-γ 100 R column [30×21.20 mm, 10 micron; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 4.0 mL (0.05 N HCl/water); gradient: 15→50% B over 15 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 10.40-11.75 min, were collected and freeze-dried to give product as a yellow solid: ¹H NMR (400 MHz, CD₃OD) δ 7.37 (s, 1H), 4.10 (s, 1H), 3.87 (s, 3H), 3.35-3.30 (m, 3H), 3.10-2.90 (m, 8H), 2.26-2.16 (m, 2H), 1.70-1.58 (m, 1H), 1.25-1.16 (m, 1H), 0.76-0.70 (m, 2H), 0.46-0.42 (m, 2H); MS (ESI) m/z 514.4 (M+H), calcd for C₂₆H₃₂N₃O₈514.21.
Compound 184. Compound 2-6 (32 mg, 0.042 mmol) was dissolved in 1,2-dichloroethane (1.0 mL). N-(tert-butoxycarbonyl)-L-prolinal (12 μL, 0.064 mmol, 1.5 eq) was added, followed by acetic acid (12 μL, 0.21 mmol, 5 eq). After stirred at rt for 1 h, sodium triacetoxyborohydride (27 mg, 0.13 mmol, 3 eq) was added. Stirring was continued for another 2 h. The reaction mixture was poured into pH=7 buffer and sat. NaHCO3 solution, extracted three times with EtOAc. The combined organic extracts were washed with brine, dried over Na₂SO₄, and concentrated to give crude 7-1, wherein R^Ais pyrrolidin-2-yl (7-1-5), which was used directly for the next step without purification.
Compound 7-1-5 obtained above was dissolved in anhydrous dioxane (1 mL). Solution of HCl in dioxane (4M, 1 mL) was added at rt. The resulting mixture was stirred at rt and the reaction was monitored by LC-MS. The volatiles were evaporated after SM was completely consumed. The residue was suspended in EtOAc, and washed with sat. NaHCO₃, brine, dried (Na₂SO₄), and concentrated. Preparative reverse phase HPLC purification on a Waters Autopurification system using a Sunfire Prep C18 OBD column [5 μm, 19×50 mm; flow rate, 20 mL/min; Solvent A: H₂O with 0.1% HCO₂H; Solvent B: CH₃CN with 0.1% HCO₂H; injection volume: 4.0 mL (CH₃CN); gradient: 0→100% B over 10 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 7.08-8.00 min, were collected and concentrated on a RotaVap at rt to remove most of the acetonitrile. The resulting mostly aqueous solution was extracted with EtOAc. The combined EtOAc extracts were dried (Na₂SO₄) and concentrated.
The residue was dissolved in CH₃CN (1 mL) in a plastic vial. Aqueous HF (48%, 0.25 mL) was added. After stirred at rt for 16 h, the reaction mixture was poured into aqueous solution (12.5 mL) of K₂HPO₄(1.75 g). The resulting mixture was extracted three times with EtOAc. The combined organic phases were washed with brine, dried, concentrated to give crude product 7-2, wherein RA is pyrrolidin-2-yl (7-2-5).
The crude 7-2-5 was dissolved in 0.5 N HCl in MeOH (105 μL, 3 eq). The excess volatiles were evaporated. The pre-formed HCl salt was re-dissolved in MeOH (2.0 mL) and to the resulting solution was added palladium on carbon (10% wt, 7.0 mg, 30% w/w). The reaction flask was briefly evacuated and re-filled with hydrogen. The reaction mixture was stirred at rt and monitored by LC-MS. After SM was consumed, the mixture was filtered through a small pad of Celite. The filtrate was concentrated to give crude Compound 184, which was purified by HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-γ 100 R column [30×21.20 mm, 10 micron; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 4.0 mL (0.05 N HCl/water); gradient: 10-40% B over 15 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 9.95-10.05 min, were collected and freeze-dried to give product as a yellow solid: ¹H NMR (400 MHz, CD₃OD) δ 7.30 (s, 1H), 4.10 (s, 1H), 3.86 (s, 3H), 3.40-3.25 (m, 3H), 3.10-2.90 (m, 8H), 2.26-2.16 (m, 2H), 1.85-1.75 (m, 2H), 1.62-1.52 (m, 1H), 1.06 (t, J=7.3 Hz, 3H); MS (ESI) m/z 543.4 (M+H), calcd for C₂₇H₃₅N₄O₈543.24.
Compound 185. Compound 185 was obtained by the procedure of Compound 180 employing 3,3-dimethylbutyraldehyde. ¹H NMR (400 MHz, CD₃OD) 87.24 (s, 1H), 4.09 (s, 1H), 3.85 (s, 3H), 3.35-3.45 (m, 2H), 2.95-3.10 (m, 9H), 2.12-2.25 (m, 2H), 1.65-1.72 (m, 3H), 0.98 (s, 9H); MS (ESI) m/z 544.4 (M+H), calcd for C₂₈H₃₈N₃O₈544.23.
Compound 186. Compound 186 was obtained by the procedure of Compound 180 employing tert-butyl-N(Cbz)CH₂CHO. ¹H NMR (400 MHz, CD₃OD) δ 6.95 (s, 1H), 4.07 (s, 1H), 3.81 (s, 3H), 3.64 (t, J=6.5 Hz, 2H), 3.20 (dd, J=3.9, 14.2 Hz, 1H), 3.03 (s, 3H), 2.95 (s, 3H), 2.90-3.10 (m, 4H), 2.15-2.20 (m, 1H), 2.01-2.13 (m, 1H), 1.55-1.65 (m, 1H), 1.41 (s, 9H); MS (ESI) m/z 559.2 (M+H), calcd for C₂₈H₃₉N₄O₈559.28.

Example 8

Synthesis of Compounds of Formula II, wherein Y is —(C₁-C₄)alkylene-N(R²)(R³), —CH═N—OR², or —C(O)—N(R²)(R⁴)

Phenyl 2-(benzyloxy)-3-bromo-5-methoxy-6-methylbenzoate (8-2). A solution of Br₂(0.328 mL, 6.4 mmol, 1.1 equiv) in HOAc (2 mL) was added to a solution of phenol 1-4 (1.50 g, 5.8 mmol, 1.0 equiv) in HOAc (10 mL) dropwise at 10° C. The resulting red solution was then stirred at rt for 50 min, and more Br₂(30 μL, 0.58 mmol, 0.1 equiv) in HOAc (0.2 mL) was added. After stirring at rt for 1 h, the reaction mixture was poured onto ice-water (80 mL), diluted with EtOAc (150 mL). The organic phase was separated, washed with water (4×75 mL). The resulting organic phase was dried over magnesium sulfate, filtered, and concentrated to afford a brownish solid. The crude product was used directly for the next reaction. K₂CO₃(1.60 g, 11.6 mmol, 2.0 equiv) was added to a solution of the above product in acetone (30 mL). Then BnBr (1.03 mL, 8.7 mmol, 1.5 equiv) was added. The resulting reaction mixture was stirred at rt for 20 h and heated at 50° C. for 45 min. The reaction was then cooled to rt and filtered. The filtrate was concentrated, and the residue was diluted with EtOAc and water. The organic phase was separated, washed with brine. The resulting organic phase was dried over magnesium sulfate, filtered, and concentrated. The residue was purified by flash chromatography (2-4% EtOAc/Hexanes) to give 8-2 (1.79 g, 72% over 2 steps): ¹H NMR (400 MHz, CDCl₃) δ 7.51-7.49 (m, 2H), 7.39-7.33 (m, 5H), 7.26-7.22 (m, 1H), 7.10 (s, 1H), 7.07-7.05 (m, 2H), 5.08 (s, 2H), 3.85 (s, 3H), 2.26 (s, 3H); MS (ESI) m/z 425.26, 427.32 (M−H).
Phenyl 2-(benzyloxy)-3-formyl-5-methoxy-6-methylbenzoate (8-3). To a solution of 8-2 (76 mg, 0.178 mmol, 1.0 equiv) in anhydrous THF (1 mL) was added a solution of i-PrMgCl.LiCl in THF (1.2 M, 252 μL, 0.303 mmol, 1.7 equiv) dropwise at 0° C. under a N₂atmosphere. The resulting reaction mixture was stirred at rt for 1 h 20 min. DMF (47 μL, 0.606 mmol, 3.0 equiv) was then added. The reaction was stirred for 5 min at rt, and quenched by saturated aqueous NH₄Cl. The resulting mixture was extracted twice with EtOAc (30 mL). The organic phase was separated, dried over sodium sulfate, filtered, and concentrated. The residue was purified by flash chromatography (2-5% EtOAc/Hexanes) to give 8-3 (55.5 mg, 83%): ¹H NMR (400 MHz, CDCl₃) δ 10.14 (s, 1H), 7.41-7.34 (m, 7H), 7.33 (s, 1H), 7.28-7.25 (m, 1H), 7.13-7.11 (m, 2H), 5.12 (s, 2H), 3.89 (s, 3H), 2.39 (s, 3H); MS (ESI) m/z 375.33 (M−H).
Phenyl 2-(benzyloxy)-3-((tert-butylimino)methyl)-5-methoxy-6-methylbenzoate (8-4). Tert-butyl amine (78 μL, 0.738 mmol, 5.0 equiv) was added to a solution of 8-3 (55.5 mg, 0.147 mmol, 1.0 equiv) in toluene (1 mL). The resulting reaction mixture was stirred at rt overnight, and then diluted with toluene (5 mL), concentrated, and dried under high vacuum. The crude product 8-4 was used directly for the next reaction. ¹H NMR (400 MHz, CDCl₃) δ 8.63 (s, 1H), 7.64 (s, 1H), 7.50-7.44 (m, 7H), 7.38-7.34 (m, 1H), 7.24-7.22 (m, 2H), 5.09 (s, 2H), 4.02 (s, 3H), 2.45 (s, 3H), 1.34 (s, 9H); MS (ESI) m/z 432.39 (M+H).
(4aS,11aR,12aS,13S)-3,7-bis(benzyloxy)-4a-(tert-butyldimethylsilyloxy)-13-(dimethylamino)-5-hydroxy-10-methoxy-4,6-dioxo-4,4a,6,11,11a,12,12a,13-octahydrotetraceno[2,3-d]isoxazole-8-carbaldehyde (8-5). A solution of the above crude imine 8-4 in THF (1.5 mL) was added to a solution of LDA (1.8 M, 90 μL, 0.162 mmol, 1.1 equiv) and TMEDA (24 μL, 0.162 mmol, 1.1 equiv) in THF (1 mL) dropwise via a cannula at −78° C. The resulting red solution was stirred at that temperature for 5 min. A solution of enone 1-6 (57 mg, 0.118 mmol, 0.8 equiv) in THF (2 mL) was added very slowly. The resulting light yellow solution was stirred at −78° C. for 5 min. A solution of LHMDS in THF (1.0 M, 147 μL, 0.147 mmol, 1.0 equiv) was added. The resulting reaction mixture was then allowed to warm up to −20° C. over 40 min. Saturated aqueous NH₄Cl was added. The resulting mixture was stirred at rt for 5 min, and extracted with EtOAc (30 mL). The organic phase was separated, dried over sodium sulfate, filtered, and concentrated. The residue was purified by a Preparative reverse phase HPLC on a Waters Autopurification system using a Sunfire Prep C18 OBD column [5 μm, 19×50 mm; flow rate, 20 mL/min; Solvent A: H₂O with 0.1% HCO₂H; Solvent B: CH₃CN with 0.1% HCO₂H; injection volume: 4.0 mL (CH₃CN); gradient: 10→100% B over 10 min; mass-directed fraction collection]. Fractions with the desired MW of the imine product and aldehyde product were collected, allowed to stand in the hood overnight, and concentrated to afford the desired aldehyde product 8-5 (62.4 mg, 69%): ¹H NMR (400 MHz, CDCl₃) δ 15.86 (br s, 1H), 10.12 (s, 1H), 7.50-7.48 (m, 2H), 7.39-7.29 (m, 9H), 5.36 (s, 2H), 5.02, 4.93 (ABq, J=11.0 Hz, 2H), 3.97 (d, J=11.0 Hz, 1H), 3.88 (s, 3H), 3.42 (dd, J=4.9, 16.5 Hz, 1H), 3.04-2.96 (m, 1H), 2.59-2.56 (m, 1H), 2.52-2.44 (m, 7H), 2.37 (t, J=15.9 Hz, 1H), 2.18 (d, J=14.6 Hz, 1H), 0.82 (s, 9H), 0.28 (s, 3H), 0.14 (s, 3H); MS (ESI) m/z 765.52 (M+H).
Compound 190. A solution of methylamine in THF (2.0 M, 122 μL, 0.24 mmol, 6.0 equiv), acetic acid (14 μL, 0.24 mmol, 6.0 equiv) and sodium triacetoxyborohydride (17 mg, 0.08 mmol, 2.0 equiv) were added sequentially to a solution of compound 8-5 (31 mg, 0.040 mmol, 1.0 equiv) in 1,2-dichloroethane (1 mL) at 23° C. After stirring for 3 h, the reaction mixture was quenched by the addition of saturated aqueous sodium bicarbonate (2 mL) and pH 7 phosphate buffer (10 mL) and extracted with dichloromethane (2×25 mL). The combined organic extracts were dried over anhydrous sodium sulfate, filtered, and concentrated. The residue was used directly in the next reaction.
Aqueous HF (48-50%, 0.3 mL) was added to a solution of the above crude product in acetonitrile (0.6 mL) in a polypropylene reaction vessel at 23° C. The resulting mixture was stirred vigorously at 23° C. overnight and poured into aqueous K₂HPO₄(3.6 g dissolved in 25 mL water). The resulting mixture was extracted with EtOAc (30 mL, then 20 mL). The combined organic extracts were dried over anhydrous sodium sulfate, filtered, and concentrated. The residue was used directly in the next step without further purification.
The above crude product was dissolved in MeOH (1 mL) and HCl/MeOH (0.5 N, 80 μL, 2.0 equiv). Pd—C (10 wt %, 10 mg) was added in one portion at 23° C. The reaction vessel was sealed and purged with hydrogen by briefly evacuating the flask followed by flushing with hydrogen gas (1 atm). After stirring at 23° C. for 40 min, the reaction mixture was filtered through a small Celite pad. The filtrate was concentrated. The residue was purified by a preparative reverse phase HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-γ 100A column [10 μm, 150×21.20 mm; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 3.0 mL (0.05 N HCl/water and MeCN, 1:1); gradient: 15→35% B over 15 min; mass-directed fraction collection]. Fractions containing the desired product, eluting at 5.2-7.1 min, were collected and freeze-dried to yield Compound 190 (11.6 mg, 52% over 3 steps): ¹H NMR (400 MHz, CD₃OD) δ 7.39 (s, 1H), 4.25 (s, 2H), 4.11 (s, 1H), 3.84 (s, 3H), 3.32-3.27 (m, 1H), 3.04-2.96 (m, 8H), 2.73 (s, 3H), 2.24-2.20 (m, 1H), 2.14 (dd, J=13.7, 16.0 Hz, 1H), 1.66-1.57 (m, 1H); MS (ESI) m/z 488.35 (M+H).
The following compounds were prepared similarly to Compound 190 coupling the appropriate amine NHR²R³to 8-5.
Compound 191. ¹H NMR (400 MHz, CD₃OD) δ 7.43 (s, 1H), 4.28 (s, 2H), 4.11 (s, 1H), 3.85 (s, 3H), 3.33-3.28 (m, 1H), 3.05-2.97 (m, 8H), 2.92 (d, J=7.3 Hz, 2H), 2.25-2.06 (m, 3H), 1.67-1.58 (m, 1H), 1.05 (d, J=6.4 Hz, 6H); MS (ESI) m/z 530.31 (M+H).
Compound 192. ¹H NMR (400 MHz, CD₃OD) δ 7.42 (s, 1H), 4.33 (s, 2H), 4.10 (s, 1H), 3.85 (s, 3H), 3.34-3.29 (m, 1H), 3.04-2.96 (m, 8H), 2.87 (s, 2H), 2.24-2.13 (m, 2H), 1.68-1.58 (m, 1H), 1.05 (s, 9H); MS (ESI) m/z 544.55 (M+H).
Compound 193. ¹H NMR (400 MHz, CD₃OD) δ 7.46 (s, 1H), 4.64-4.60 (m, 1H), 4.18 (d, J=12.8 Hz, 1H), 4.12 (s, 1H), 3.86 (s, 3H), 3.33-3.30 (m, 1H), 3.16-2.97 (m, 10H), 2.84 (s, 3H), 2.30-2.12 (m, 3H), 1.67-1.58 (m, 1H), 1.12-1.05 (m, 6H); MS (ESI) m/z 544.34 (M+H).
Compound 194. ¹H NMR (400 MHz, CD₃OD) δ 7.54 (s, 1H), 4.63-4.58 (m, 1H), 4.30 (d, J=12.8 Hz, 1H), 4.11 (s, 1H), 3.86 (s, 3H), 3.34-3.27 (m, 1H), 3.11 (dd, J=1.8, 13.7 Hz, 1H), 3.04-2.96 (m, 12H), 2.24-2.11 (m, 2H), 1.67-1.58 (m, 1H), 1.07 (d, J=5.5 Hz, 9H); MS (ESI) m/z 558.35 (M+H).
Compound 195. ¹H NMR (400 MHz, CD₃OD) δ 7.43 (s, 1H), 4.37 (s, 2H), 4.11 (s, 1H), 3.85 (s, 3H), 3.33-3.28 (m, 1H), 3.04-2.96 (m, 8H), 2.90 (s, 3H), 2.89 (s, 3H), 2.24-2.21 (m, 1H), 2.14 (dd, J=14.2, 16.5 Hz, 1H), 1.66-1.56 (m, 1H); MS (ESI) m/z 502.37 (M+H).
Compound 196. ¹H NMR (400 MHz, CD₃OD) δ 7.42 (s, 1H), 4.18-4.27 (m, 2H), 4.09 (s, 1H), 3.86 (s, 3H), 3.78-3.90 (m, 2H), 2.95-3.40 (m, 7H), 2.10-2.25 (m, 2H), 1.55-1.70 (m, 1H), 1.48 (s, 9H); MS (ESI) m/z 530.3 (M+H).
Compound 197.
Aqueous HF (48-50%, 0.2 mL) was added to a solution of aldehyde 8-5 (24 mg, 0.031 mmol, 1.0 equiv) in acetonitrile (0.5 mL) in a polypropylene reaction vessel at 23° C. The resulting mixture was stirred vigorously at 23° C. overnight and poured into aqueous K₂HPO₄(3.6 g dissolved in 25 mL water). The resulting mixture was extracted with EtOAc (30 mL, then 20 mL). The combined organic extracts were dried over anhydrous sodium sulfate, filtered, and concentrated. The residue was used directly in the next step without further purification.
The above crude product was dissolved in MeOH (1 mL) and HCl/MeOH (0.5 N, 61 μL, 1.0 equiv). Pd—C (10 wt %, 5 mg) was added in one portion at 23° C. The reaction vessel was sealed and purged with hydrogen by briefly evacuating the flask followed by flushing with hydrogen gas (1 atm). After stirring at 23° C. for 30 min, the reaction mixture was filtered through a small Celite pad. The filtrate was concentrated. The residue was purified by a preparative reverse phase HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-γ 100A column [10 μm, 150×21.20 mm; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH3CN; injection volume: 3.0 mL (0.05 N HCl/water and MeCN, 1:1); gradient: 20→50% B over 15 min; mass-directed fraction collection]. Fractions containing the desired product, eluting at 11.0-12.1 min, were collected and freeze-dried to yield compound 8-12 (4.3 mg, 29% over 2 steps): ¹H NMR (400 MHz, CD₃OD) δ 7.38 (s, 1H), 5.66 (s, 1H), 4.07 (s, 1H), 3.79 (s, 3H), 3.32-3.29 (m, 1H), 3.03-2.93 (m, 8H), 2.20-2.10 (m, 2H), 1.66-1.57 (m, 1H); MS (ESI) m/z 473.29 (M+H).
Compound 197. NH₂OH.HCl (1.3 mg, 0.018 mmol, 1.0 equiv) was added to a solution of aldehyde 8-12 (4.3 mg, 0.009 mmol, 1.0 equiv) in MeOH (0.5 mL). The resulting reaction mixture was stirred at rt for 1 h 30 min, and concentrated. The residue was purified by a preparative reverse phase HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-γ 100A column [10 μm, 150×21.20 mm; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 3.0 mL (0.05 N HCl/water and MeCN, 1:1); gradient: 20→50% B over 15 min; mass-directed fraction collection]. Fractions containing the desired product, eluting at 9.5-10.8 min, were collected and freeze-dried to yield Compound 197 (2.0 mg, 45%): ¹H NMR (400 MHz, CD₃OD) δ ¹H NMR (400 MHz, CD₃OD) δ 8.41 (s, 1H), 7.60 (s, 1H), 4.07 (s, 1H), 3.81 (s, 3H), 3.32-3.30 (m, 1H), 3.03-2.93 (m, 8H), 2.20-2.11 (m, 2H), 1.67-1.57 (m, 1H); MS (ESI) m/z 488.29 (M+H).
Compound 198. Compound 198 was prepared similarly to compound 197: ¹H NMR (400 MHz, CD₃OD) δ 8.40 (s, 1H), 7.59 (s, 1H), 4.08 (s, 1H), 3.94 (s, 3H), 3.81 (s, 3H), 3.32-3.26 (m, 1H), 3.04-2.93 (m, 8H), 2.23-2.10 (m, 2H), 1.67-1.57 (m, 1H); MS (ESI) m/z 502.34 (M+H).

Compound 189

A solution of sulfamic acid (11 mg, 0.113 mmol, 1.4 equiv) in water (0.35 mL) was added dropwise to a solution of aldehyde 8-5 (61.8 mg, 0.081 mmol, 1.0 equiv) in MeCN (7 mL) at 0° C. Then a solution of NaOClO in water (0.35 mL, 0.113 mmol, 1.4 equiv) was added dropwise. The resulting reaction mixture was stirred at 0° C. for 15 min, and diluted with water (5 mL). The resulting mixture was stirred at rt for 5 min and extracted with EtOAc (50 mL). The organic phase was separated, dried over sodium sulfate, filtered and concentrated. The residue was purified by a Preparative reverse phase HPLC on a Waters Autopurification system using a Sunfire Prep C18 OBD column [5 μm, 19×50 mm; flow rate, 20 mL/min; Solvent A: H₂O with 0.1% HCO₂H; Solvent B: CH₃CN with 0.1% HCO₂H; injection volume: 4.0 mL (CH₃CN); gradient: 50→100% B over 10 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 9.0-10.6 min, were collected and concentrated to give the desired product 8-6 (36.9 mg, 58%): ¹H NMR (400 MHz, CDCl₃) δ 15.83 (s, 1H), 7.72 (s, 1H), 7.51-7.49 (m, 2H), 7.40-7.33 (m, 8H), 5.36 (s, 2H), 5.05, 4.95(ABq, J=9.8 Hz, 2H), 3.96 (d, J=11.0 Hz, 1H), 3.90 (s, 3H), 3.42 (dd, J=4.9, 17.1 Hz, 1H), 3.04-2.97 (m, 1H), 2.61-2.58 (m, 1H), 2.53-2.45 (m, 7H), 2.37 (t, J=16.5 Hz, 1H), 2.19 (d, J=14.6 Hz, 1H), 0.82 (s, 9H), 0.28 (s, 3H), 0.14 (s, 3H); MS (ESI) m/z 781.51 (M+H).
Compound 189. Aqueous HF (48-50%, 0.2 mL) was added to a solution of aldehyde 8-6 (18 mg, 0.023 mmol, 1.0 equiv) in acetonitrile (0.5 mL) in a polypropylene reaction vessel at 23° C. The resulting mixture was stirred vigorously at 23° C. overnight and poured into aqueous K₂HPO₄(2.4 g dissolved in 25 mL water). The resulting mixture was extracted with EtOAc (40 mL). The organic phase was dried over anhydrous sodium sulfate, filtered, and concentrated. The residue was used directly in the next step without further purification.
The above crude product was dissolved in MeOH (2 mL) and dioxane (2 mL). Pd—C (10 wt %, 8 mg) was added in one portion at 23° C. The reaction vessel was sealed and purged with hydrogen by briefly evacuating the flask followed by flushing with hydrogen gas (1 atm). After stirring at 23° C. for 40 min, the reaction mixture was filtered through a small Celite pad. The filtrate was concentrated. The residue was purified by a preparative reverse phase HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-γ 100A column [10 μm, 150×21.20 mm; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 3.0 mL (0.05 N HCl/water); gradient: 20→60% B over 15 min; mass-directed fraction collection]. Fractions containing the desired product, eluting at 6.6-8.0 min, were collected and freeze-dried to yield Compound 189 (6.5 mg, 58% over 2 steps): ¹H NMR (400 MHz, CD₃OD) δ 7.67 (s, 1H), 4.07 (s, 1H), 3.83 (s, 3H), 3.33-3.30 (m, 1H), 3.03-2.92 (m, 8H), 2.20-2.10 (m, 2H), 1.65-1.55 (m, 1H); MS (ESI) m/z 489.28 (M+H).
Compound 187.
Neopentyl amine (9.2 μL, 0.039 mmol, 2.0 equiv) was added to a solution of 8-6 (15.3 mg, 0.020 mmol, 1.0 equiv), EDCI (7.5 mg, 0.039 mmol, 2.0 equiv) and HOBt (1.3 mg, 0.010 mmol, 0.5 equiv) in DMF (0.5 mL). The resulting reaction mixture was stirred at rt overnight, and purified by a Preparative reverse phase HPLC on a Waters Autopurification system using a Sunfire Prep C18 OBD column [5 μm, 19×50 mm; flow rate, 20 mL/min; Solvent A: H₂O with 0.1% HCO₂H; Solvent B: CH₃CN with 0.1% HCO₂H; injection volume: 4.0 mL (CH₃CN); gradient: 90→100% B over 10 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 5.4-6.6 min, were collected and concentrated to give the desired amide 8-7-1 (11 mg, 66%): ¹H NMR (400 MHz, CDCl₃) δ 16.01 (s, 1H), 9.53 (t, J=6.1 Hz, 1H), 7.83 (s, 1H), 7.50-7.48 (m, 2H), 7.40-7.32 (m, 8H), 5.35 (s, 2H), 4.87 (s, 2H), 3.97 (d, J=11.0 Hz, 1H), 3.90 (s, 3H), 3.39 (dd, J=4.9, 17.1 Hz, 1H), 3.13-3.04 (m, 2H), 3.00-2.93 (m, 1H), 2.58-2.54 (m, 1H), 2.49 (s, 6H), 2.47-2.42 (m, 1H), 2.36 (t, J=16.5 Hz, 1H), 2.17 (d, J=14.6 Hz, 1H), 0.81 (s, 9H), 0.73 (s, 9H), 0.27 (s, 3H), 0.12 (s, 3H); MS (ESI) m/z 850.72 (M+H).
Aqueous HF (48-50%, 0.2 mL) was added to a solution of amide (11 mg, 0.013 mmol, 1.0 equiv) in acetonitrile (0.5 mL) in a polypropylene reaction vessel at 23° C. The resulting mixture was stirred vigorously at 23° C. overnight and poured into aqueous K₂HPO₄(2.4 g dissolved in 25 mL water). The resulting mixture was extracted with EtOAc (50 mL). The organic phase was dried over anhydrous sodium sulfate, filtered, and concentrated. The residue was used directly in the next step without further purification.
The above crude product was dissolved in MeOH (1.5 mL) and HCl/MeOH (0.5 N, 26 μL, 1.0 equiv). Pd—C (10 wt %, 3.5 mg) was added in one portion at 23° C. The reaction vessel was sealed and purged with hydrogen by briefly evacuating the flask followed by flushing with hydrogen gas (1 atm). After stirring at 23° C. for 30 min, the reaction mixture was filtered through a small Celite pad. The filtrate was concentrated. The residue was purified by a preparative reverse phase HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-γ 100A column [10 μm, 150×21.20 mm; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 3.0 mL (0.05 N HCl/water); gradient: 25→60% B over 15 min; mass-directed fraction collection]. Fractions containing the desired product, eluting at 11.0-12.6 min, were collected and freeze-dried to yield Compound 187 (3.0 mg, 39% over 2 steps): ¹H NMR (400 MHz, CD₃OD) δ 7.86 (s, 1H), 4.09 (s, 1H), 3.84 (s, 3H), 3.35-3.30 (m, 1H), 3.03-2.96 (m, 8H), 2.23-2.15 (m, 2H), 1.68-1.58 (m, 1H), 0.99 (s, 9H); MS (ESI) m/z 558.38 (M+H).
Compound 188. Compound 188 was prepared Compound 187 using dimethylaminoethylamine in place of neopentyl amine. ¹H NMR (400 MHz, CDCl₃) δ 7.89 (s, 1H), 4.11 (s, 1H), 3.85 (s, 3H), 3.85-3.82 (m, 2H), 3.41 (t, J=6.0 Hz, 2H), 3.37-3.32 (m, 1H), 3.04-2.96 (m, 14H), 2.23-2.15 (m, 2H), 1.68-1.58 (m, 1H); MS (ESI) m/z 559.44 (M+H).

Example 9

Compounds of Formula II wherein Y is —(CH₂)₃—N(R²)(R³)

(4aS,11aR,12aS,13S)-3,7-bis(benzyloxy)-8-bromo-4a-(tert-butyldimethylsilyloxy)-13-(dimethylamino)-5-hydroxy-10-methoxy-11a,12,12a,13-tetrahydrotetraceno[2,3-d]isoxazole-4,6(4aH,11H)-dione (9-1). n-BuLi (5.24 mL, 1.6 M/hexanes, 8.38 mmol, 2.0 equiv) was added dropwise to a solution of diisopropylamine (1.18 mL, 8.38 mmol, 2.0 equiv) and TMEDA (1.26 mL, 8.38 mmol, 2.0 equiv) in THF (40 mL) at −78 C. The reaction solution was stirred at −78 C for 30 min. A solution of ester 8-2 (1.79 g, 4.19 mmol, 1.0 equiv) in THF (20 mL) was added via a cannula over 20 min. The resulting deep red solution was stirred at −78 C for 20 min and was then cooled to −100 C. A solution of enone 1-6 (1.62 g, 3.35 mmol, 0.8 equiv) in THF (20 mL) was added to the reaction mixture via a cannula. The reaction mixture was allowed to warm to −30 C over 1 h 30 min, quenched by a mixture of saturated aqueous NH₄Cl (100 mL). The resulting mixture was extracted with EtOAc (200 mL, then 50 mL). The combined EtOAc extracts were dried (sodium sulfate), filtered and concentrated. The residue was purified by flash chromatography (9:1:1 Hexanes/EtOAc/DCM) to give compound 9-1 (1.27 g, 46%): ¹H NMR (400 MHz, CDCl₃) δ 16.00 (s, 1H), 7.59-7.57 (m, 2H), 7.52-7.50 (m, 2H), 7.41-7.32 (m, 6H), 7.26 (s, 1H), 5.37 (s, 2H), 5.00, 4.92 (ABq, J=9.2 Hz, 2H), 3.98 (d, J=10.4 Hz, 1H), 3.85 (s, 3H), 3.32 (dd, J=4.9, 15.9 Hz, 1H), 2.98-2.91 (m, 1H), 2.58-2.43 (m, 8H), 2.29 (t, J=15.9 Hz, 1H), 2.15 (d, J=14.0 Hz, 1H), 0.82 (s, 9H), 0.28 (s, 3H), 0.14 (s, 3H); MS (ESI) m/z 815.59, 817.59 (M+H).
(4aS,11aR,12aS,13S)-3,7-bis(benzyloxy)-4a-(tert-butyldimethylsilyloxy)-8-((Z)-3-(tert-butyldimethylsilyloxy)allyl)-13-(dimethylamino)-5-hydroxy-10-methoxy-11a,12,12a,13-tetrahydrotetraceno[2,3-dfisoxazole-4,6(4aH,11H)-dione (9-3). A reaction vessel charged with bromide 9-1 (321 mg, 0.394 mmol, 1.0 equiv), Pd(OAc)₂(17.7 mg, 0.079 mmol, 0.2 equiv) and P(o-Tol)3 (36 mg, 0.118 mmol, 0.3 eq) was vacuumed/back flushed with N₂several times. Then DMF (2 mL), TEA (275 μL, 1.97 mmol, 5.0 equiv) and allyl dimethyl-tert-butylsilyl ether (168 μL, 0.789 mmol, 2.0 equiv) were added under N2. The reaction was then sealed and heated at 80° C. for 6 h. The reaction mixture was cooled to rt, diluted with MeCN, and purified by a Preparative reverse phase HPLC on a Waters Autopurification system using a Sunfire Prep C18 OBD column [5 μm, 19×50 mm; flow rate, 20 mL/min; Solvent A: H₂O with 0.1% HCO₂H; Solvent B: CH₃CN with 0.1% HCO₂H; injection volume: 4.0 mL (CH₃CN); gradient: 90→100% B over 7 min; mass-directed fraction collection]. Fractions with the desired MW were collected and concentrated to afford the desired products 9-3 (containing small amount of the isomer) (212.9 mg, 60%): ¹H NMR (400 MHz, CDCl₃) δ 16.07 (s, 1H), 7.42-7.34 (m, 4H), 7.31-7.22 (m, 7H), 6.87 (s, 1H), 6.23 (d, J=6.1 Hz, 1H), 5.27 (s, 2H), 4.75, 4.69 (ABq, J=10.0 Hz, 2H), 3.92 (d, J=10.4 Hz, 1H), 3.72 (s, 3H), 3.44-3.14 (m, 3H), 2.89-2.82 (m, 1H), 2.48-2.18 (m, 9H), 2.05 (d, J=14.6 Hz, 1H), 0.83 (s, 9H), 0.73 (s, 9H), 0.19 (s, 3H), 0.05 (s, 6H), 0.04 (s, 3H); MS (ESI) m/z 907.87 (M+H).
3-((4aS,11aR,12aS,13S)-3,7-bis(benzyloxy)-4a-(tert-butyldimethylsilyloxy)-13-(dimethylamino)-5-hydroxy-10-methoxy-4,6-dioxo-4,4a,6,11,11a,12,12a,13-octahydrotetraceno[2,3-d]isoxazol-8-yl)propanal (9-4). Water (0.5 mL) was added to a solution of 9-3 (162.4 mg, 0.179 mmol, 1.0 equiv). Then TFA (0.5 mL) was added dropwise at 0° C. The resulting reaction mixture was then stirred at rt for 2 h and cooled to 0 C. Saturated sodium bicarbonate (8 mL) was added slowly. The resulting mixture was then extracted with EtOAc (40 mL, then 10 mL). The combined organic phase was dried over anhydrous sodium sulfate, filtered and concentrated. The crude product 9-4 was used directly for the next step.
Compound 199.
Pyrrolidine (19 μL, 0.22 mmol, 5.0 equiv), acetic acid (13 μL, 0.22 mmol, 5.0 equiv) and sodium triacetoxyborohydride (28 mg, 0.13 mmol, 3.0 equiv) were added sequentially to one fourth of the above product 9-4 (0.045 mmol, 1.0 equiv) in 1,2-dichloroethane (1 mL) at 23° C. After stirring for overnight, the reaction mixture was quenched by the addition of saturated aqueous sodium bicarbonate (5 mL) and pH 7 phosphate buffer (10 mL) and extracted with dichloromethane (3×15 mL). The combined organic extracts were dried over anhydrous sodium sulfate, filtered, and concentrated. The residue was purified by a Preparative reverse phase HPLC on a Waters Autopurification system using a Sunfire Prep C18 OBD column [5 μm, 19×50 mm; flow rate, 20 mL/min; Solvent A: H₂O with 0.1% HCO₂H; Solvent B: CH₃CN with 0.1% HCO₂H; injection volume: 4.0 mL (CH₃CN); gradient: 10→100% B over 10 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 6.0-7.7 min, were collected and freeze-dried to afford the desired products 9-5-1 (16 mg, 42% for 2 steps): ¹H NMR (400 MHz, CD₃OD) δ 16.12 (br s, 1H), 7.50-7.48 (m, 2H), 7.44-7.42 (m, 2H), 7.39-7.30 (m, 6H), 6.90 (s, 1H), 5.35 (s, 2H), 4.80, 4.77 (ABq, J=10.4 Hz, 2H), 3.99 (d, J=10.4 Hz, 1H), 3.82 (s, 3H), 3.31 (dd, J=4.9, 15.9 Hz, 1H), 2.99-2.92 (m, 1H), 2.70-2.42 (m, 16H), 2.31 (t, J=15.3 Hz, 1H), 2.14 (d, J=14.6 Hz, 1H), 1.88-1.77 (m, 6H), 0.81 (s, 9H), 0.27 (s, 3H), 0.12 (s, 3H); MS (ESI) m/z 848.69 (M+H).
Aqueous HF (48-50%, 0.3 mL) was added to a solution of amine 9-5-1 (16 mg, 0.019 mmol, 1.0 equiv) in acetonitrile (0.6 mL) in a polypropylene reaction vessel at 23° C. The resulting mixture was stirred vigorously at 23° C. overnight and poured into aqueous K₂HPO₄(3.6 g dissolved in 25 mL water). The resulting mixture was extracted with EtOAc (3×15 mL). The combined organic phase was dried over anhydrous sodium sulfate, filtered, and concentrated. The residue was used directly in the next step without further purification.
The above crude product was dissolved in MeOH (1.5 mL) and HCl/MeOH (0.5 N, 76 μL, 2.0 equiv). Pd—C (10 wt %, 4.3 mg) was added in one portion at 23° C. The reaction vessel was sealed and purged with hydrogen by briefly evacuating the flask followed by flushing with hydrogen gas (1 atm). After stirring at 23° C. for 1 h, the reaction mixture was filtered through a small Celite pad. The filtrate was concentrated. The residue was purified by a preparative reverse phase HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-γ 100A column [10 μm, 150×21.20 mm; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 3.0 mL (0.05 N HCl/water); gradient: 10→35% B over 15 min; mass-directed fraction collection]. Fractions containing the desired product, eluting at 11.6-13.5 min, were collected and freeze-dried to yield Compound 199 (4.8 mg, 40% over 2 steps): ¹H NMR (400 MHz, CD₃OD) δ 7.19 (s, 1H), 4.08 (s, 1H), 3.80 (s, 3H), 3.69-3.63 (m, 2H), 3.28-3.21 (m, 3H), 3.08-2.93 (m, 10H), 2.77 (t, J=7.8 Hz, 2H), 2.22-2.00 (m, 8H), 1.65-1.55 (m, 1H); MS (ESI) m/z 556.51 (M+H).
Compounds 200-205 were prepared similarly to Compound 199, using the appropriate amine NR²R³.
Compound 200. ¹H NMR (400 MHz, CD₃OD) δ 7.18 (s, 1H), 4.08 (s, 1H), 3.80 (s, 3H), 3.28-3.24 (m, 1H), 3.09-2.90 (m, 12H), 2.78 (t, J=7.3 Hz, 2H), 2.21-1.97 (m, 4H), 1.66-1.56 (m, 1H), 1.31 (t, J=7.3 Hz, 3H); MS (ESI) m/z 530.42 (M+H).
Compound 201. ¹H NMR (400 MHz, CD₃OD) δ 7.18 (s, 1H), 4.73 (dt, J=4.6, 47.2 Hz, 2H), 4.08 (s, 1H), 3.80 (s, 3H), 3.39 (dt, J=4.6, 26.6 Hz, 2H), 3.28-3.23 (m, 1H), 3.12-2.93 (m, 10H), 2.78 (t, J=7.8 Hz, 2H), 2.21-2.01 (m, 4H), 1.66-1.55 (m, 1H); MS (ESI) m/z 548.47 (M+H).
Compound 202. ¹H NMR (400 MHz, CD₃OD) δ 7.18 (s, 1H), 6.30 (tt, J=2.8, 54.0 Hz, 1H), 4.08 (s, 1H), 3.80 (s, 3H), 3.56 (dt, J=3.2, 15.6 Hz, 2H), 3.28-3.23 (m, 1H), 3.17-3.13 (m, 2H), 3.04-2.93 (m, 8H), 2.78 (t, J=7.3 Hz, 2H), 2.22-2.02 (m, 4H), 1.65-1.55 (m, 1H); MS (ESI) m/z 566.49 (M+H).
Compound 203. ¹H NMR (400 MHz, CD₃OD) δ 7.18 (s, 1H), 4.08 (s, 1H), 4.04 (q, J=9.2 Hz, 1H), 3.80 (s, 3H), 3.28-3.23 (m, 1H), 3.21-3.17 (m, 2H), 3.04-2.93 (m, 8H), 2.78 (t, J=7.3 Hz, 2H), 2.20-2.05 (m, 4H), 1.65-1.55 (m, 1H); MS (ESI) m/z 584.48 (M+H).
Compound 204. ¹H NMR (400 MHz, CD₃OD) δ 7.19 (s, 1H), 4.07 (s, 1H), 3.79 (s, 3H), 3.27-3.08 (m, 5H), 3.03-2.84 (m, 8H), 2.84 (s, 3H), 2.76 (t, J=7.3 Hz, 2H), 2.20-2.05 (m, 4H), 1.65-1.55 (m, 1H), 1.32 (t, J=7.3 Hz, 3H); MS (ESI) m/z 544.42 (M+H).
Compound 205. ¹H NMR (400 MHz, CD₃OD) δ 7.18 (s, 1H), 4.26-4.20 (m, 2H), 4.08-4.03 (m, 3H), 3.80 (s, 3H), 3.28-3.20 (m, 3H), 3.04-2.93 (m, 8H), 2.73 (t, J=7.3 Hz, 2H), 2.62-2.55 (m, 1H), 2.44-2.40 (m, 1H), 2.21-2.18 (m, 1H), 2.13-2.06 (m, 1H), 1.92-1.85 (m, 2H), 1.65-1.55 (m, 1H); MS (ESI) m/z 542.44 (M+H).
(4aS,11aR,12aS,13S)-3,7-bis(benzyloxy)-4a-(tert-butyldimethylsilyloxy)-13-(dimethylamino)-5,8-dihydroxy-10-methoxy-11a,12,12a,13-tetrahydrotetraceno[2,3-dfisoxazole-4,6(4aH,11H)-dione (9-7). 9-1 (46 mg, 0.056 mmol, 1.0 equiv) was dissolved in tetrahydrofurane (2 mL). Turbo Grignard reagent (isopropylmagnesium chloride with lithium chloride, 1.2 M, 113 μL, 0.135 mmol) was added dropwise at −78° C. The mixture was warmed up to −20° C. and stirred for 1 h. Oxygen was then passed through the reaction mixture slowly for 30 min. The reaction was then quenched by adding 5 mL ammonium chloride solution following addition of ethyl acetate. The mixture was washed with H₂O (10 mL) and concentrated to give crude 9-7, which was purified by HPLC on a Sunfire column to yield 4.0 mg yellow solid.
Compound 206. Aqueous HF (0.3 mL, 48-50%) was added to a CH₃CN solution (1.0 mL) of 9-7 in a plastic vial at 25 C. The reaction was stirred at 25 C for 18 hrs. The resulting mixture was poured into an aqueous solution (10 mL) of K₂HPO₄(2 g). The solution was extracted with EtOAc (3×15 mL). The combined EtOAc extracts were dried over sodium sulfate and concentrated to give the crude intermediate.
10% Pd—C (20 mg) was added to a dioxane/MeOH solution (2 mL, 1:1) of the above crude intermediate. The reaction mixture was stirred under H₂(balloon) at 25 C for 2 hrs and filtered through a pad of Celite. The filtrate was concentrated to give the crude product 144 mg. The crude product was purified by HPLC on a Polymerx™ 10μ, RP-γ 100 R column [30×21.20 mm, 10 micron, solvent A: 0.05 N HCl, solvent B: CH₃CN, sample in 2.0 mL (0.05 N HCl), gradient elution with 0→70% B over 15 min, mass-directed fraction collection] to yield Compound 206 as a yellow solid (1.64 mg, 6.3%, 3 steps): ¹H NMR (400 MHz, CD₃OD) δ 6.82 (s, 1H), 4.05 (s, 1H), 3.74 (s, 3H), 3.17 (dd, J=15.6, 4.6 Hz, 1H), 3.02 (s, 3H), 2.96 (s, 3H), 3.01-2.89 (m, 2H), 2.19-2.11 (m, 1H), 2.09-2.00 (m, 1H), 1.65-1.53 (m, 1H); MS (ESI) m/z 461.22 (M+H).

Example 10

Synthesis of Compounds of Formula III, wherein Y is —NH—C(O)—CH₂—NR²R³, —NH—C(O)—(C₁-C₆)alkyl, —NH—C(O)-heterocyclyl, or —NH—C(O)-carbocyclyl

In Scheme 10, Z represents —(C₁-C₆)alkyl, -heterocyclyl, or -carbocyclyl. Compounds 207-209 are compounds of the invention, as well as being used as intermediates to produce additional compounds of the invention.
Phenyl 2-methoxy-5-(trifluoromethoxy)benzoate (10-2). To commerically availabe 2-methoxy-5-(trifluoromethoxy)benzoic acid (10-1) (4.73 g, 18.91 mmol, 1 equiv) in dry DCM at room temperature was added anhydrous DMF (5 drops) and oxalyl chloride (4.87 mL, 56.71 mmol, 3.0 equiv) dropwise. The reaction was stirred at room temperature for 1 hr (until gas evolution ceased). The reaction solution was concentrated in vacuo to yield the crude acid chloride as a yellow oil, which was re-dissolved in dry DCM, and added with PhOH (2.67 g, 28.37 mmol, 1.5 equiv), DIEA (9.88 mL, 56.72 mmol, 3.0 equiv) and DMAP (0.23 g, 1.88 mmol, 0.1 equiv). The reaction was stirred at room temperature for overnight, quenched with saturated sodium bicarbonate aqueous solution (100 mL), and extracted with DCM (100 mL×3). The combined DCM extracts were dried over sodium sulfate and concentrated in vacuo. Flash column chromatography with 0% and 5% EtOAc/hexanes gave the desired phenyl ester 10-2 as a pale oil (6.09 g, quantitative): R_f0.20 (10% EtOAc/hexanes); ¹H NMR (400 MHz, CDCl₃) δ 7.87 (d, J=2.4 Hz, 1H), 7.36-7.43 (m, 3H), 7.17-7.30 (m, 3H), 7.02 (d, J=9.2 Hz, 1H), 3.94 (s, 3H).
Phenyl 6-methoxy-2-methyl-3-(trifluoromethoxy)benzoate (10-3). 2,2,6,6-Tetramethylpiperidine (TMP) (3.97 mL, 23.38 mmol, 1.2 equiv) was dissolved in anhydrous THF (50 mL) and cooled to −78° C. nBuLi (9.35 mL, 2.5 M in hexane, 23.38 mmol, 1.2 equiv) was added dropwise. The yellow solution was stirred at 0° C. for 10 min and cooled to −78° C. Anhydrous N,N,N′,N′-tetramethylethylenediamine (TMEDA) (4.38 mL, 29.22 mmol, 1.5 equiv) was added, followed by dropwise addition of phenyl ester 10-2 (6.09 g, 19.50 mmol, in 50 mL anhydrous THF, 1.0 equiv) over a period of 15 min. The resulting deep yellow-brown solution was stirred at −78° C. for 30 min. Methyl iodide (1.82 mL, 29.23 mmol, 1.5 equiv) was added. The deep-brown solution was stirred from −78° C. to room temperature for 2 hrs and at room temperature for 1 hr. HOAc (6 mL) and water (100 mL) were added sequentially to quench the reaction. The bright orange solution was concentrated in vacuo and extracted with EtOAc (200 mL×1). The EtOAc extract was washed with 1 N aqueous HCl (50 mL×2) and brine (50 mL×1), dried over sodium sulfate, and concentrated in vacuo. Flash column chromatography with 0% and 5% EtOAc/hexanes gave the desired phenyl ester 10-3 as a pale solid (2.92 g, 46%): R_f0.30 (10% EtOAc/hexanes); ¹H NMR (400 MHz, CDCl₃) δ 7.40-7.45 (m, 2H), 7.20-7.30 (m, 4H), 6.81 (d, J=8.5 Hz, 1H), 3.88 (s, 3H), 2.37 (s, 3H).
Phenyl 6-hydroxy-2-methyl-3-(trifluoromethoxy)benzoate (10-4). Methyl ether 10-3 (500 mg, 1.53 mmol, 1 equiv) was dissolved in anhydrous DCM (10 mL) and cooled to −78° C. BBr₃(1.60 mL, 1.0 M/DCM, 1.60 mmol, 1.02 equiv) was added dropwise. The deep-orange solution was stirred from −78° C. to −10° C. for 4 hrs. The reaction was quenched with saturated sodium bicarbonate aqueous solution (100 mL) and extracted with DCM (50 mL×3). The combined DCM extracts were dried over sodium sulfate and concentrated in vacuo to yield the crude phenol 10-4 as a yellow oil (410 mg, 86%): R_f0.55 (10% EtOAc/hexanes); ¹H NMR (400 MHz, CDCl₃) δ 10.86 (s, 1H), 7.42-7.50 (m, 2H), 7.30-7.40 (m, 2H), 7.19 (d, J=7.9 Hz, 2H), 6.91 (d, J=9.2 Hz, 1H), 2.64 (s, 3H).
Phenyl 6-(tert-butoxycarbonyloxy)-2-methyl-3-(trifluoromethoxy)benzoate (10-5). Crude phenol 10-4 (410 mg, 1.31 mmol, 1 equiv) was dissolved in anhydrous DCM (10 mL). (Boc)₂O (430 mg, 1.97 mmol, 1.5 equiv), DIEA (0.46 mL, 2.64 mmol, 2 equiv), and DMAP (16 mg, 0.13 mmol, 0.1 equiv) were added sequentially at room temperature. The reaction was stirred at room temperature for 1 hr, quenched with saturated aqueous sodium bicarbonate (50 mL), and extracted with DCM (50 mL×3). The combined DCM extracts were dried over sodium sulfate and concentrated in vacuo. Flash column chromatography with 0% and 2% EtOAc/hexanes gave the desired product 10-5 as a white solid (540 mg, quantitative): R_f0.60 (10% EtOAc/hexanes); ¹H NMR (400 MHz, CDCl₃) δ 7.41-7.48 (m, 2H), 7.38 (d, J=10.3 Hz, 1H), 7.22-7.32 (m, 3H), 7.18 (d, J=9.2 Hz, 1H), 2.45 (s, 3H), 1.45 (s, 9H).
(4aS,11aR,12aS,13S)-3-(benzyloxy)-4a-(tert-butyldimethylsilyloxy)-13-(dimethylamino)-5-hydroxy-4,6-dioxo-10-(trifluoromethoxy)-4,4a,6,11,11a,12,12a,13-octahydrotetraceno[2,3-d]isoxazol-7-yl tert-butyl carbonate (10-6). To diisopropylamine (0.062 mL, 0.44 mmol, 2.2 equiv) in THF (5 mL) at −78° C. was added with nBuLi dropwise (0.27 mL, 1.6 M/hexane, 0.44 mmol, 2.2 equiv). The pale solution was brought to 0° C., stirred at that temperature for 10 min, and cooled to −78° C. TMEDA (0.075 mL, 0.50 mmol, 2.5 equiv) was added, followed by dropwise addition of compound 10-5 (91 mg, 0.22 mmol, 1.1 equiv, in 5 mL THF) over a period of 10 min. The resulting deep-red solution was stirred at −78° C. for 15 min. Enone 1-6 (97 mg, 0.20 mmol, 1 equiv, in 5 mL THF) was added dropwise over a period of 2 min. The resulting yellow solution was stirred from −78° C. to −10° C. over a period of 1 hr, quenched with aqueous saturated ammonium chloride (50 mL), and extracted with EtOAc (50 mL×3). The extracts were combined, dried over sodium sulfate, and concentrated in vacuo. Preparative HPLC purification on a C-18 column (mobile phase: A-0.1% formic acid/water, B-0.1% formic acid/acetonitrile; gradient: 80% B to 100% B over 10 min) yielded the desired product 10-6-1 as a yellow solid (90 mg, 56%): R_f0.40 (10% EtOAc/hexane); ¹H NMR (400 MHz, CDCl₃) δ 15.48 (s, 1H), 7.36 (d, J=7.2 Hz, 2H), 7.29-7.20 (m, 4H), 6.94 (d, J=7.2 Hz, 1H), 5.22 (s, 2H), 3.81 (d, J=10.8 Hz, 1H), 3.15 (dd, J=16.0, 4.8 Hz, 1H), 2.94-2.85 (m, 1H), 2.44-2.31 (m, 9H), 2.03 (d, J=14.4 Hz, 1H), 1.42 (s, 9H), 0.78(s, 9H), 0.15(s, 3H), 0.08(s, 3H); MS (ESI) m/z 801.3 (M+H).
(4aS,11aR,12aS,13S)-tert-butyl 3-(benzyloxy)-4a-(tert-butyldimethylsilyloxy)-13-(dimethylamino)-5,7-dihydroxy-4,6-dioxo-10-(trifluoromethoxy)-4,4a,6,11,11a,12,12a,13-octahydrotetraceno[2,3-dfisoxazole-8-carboxylate (10-6-2 The title compound (10-6-2) was also isolated from the preparation of 10-6-1: MS (ESI) m/z 801.3 (M+H).
(4aS,11aR,12aS,13S)-3-(benzyloxy)-13-(dimethylamino)-4a,5,7-trihydroxy-10-(trifluoromethoxy)-11a,12,12a,13-tetrahydrotetraceno[2,3-dfisoxazole-4,6(4aH,11H)-dione (10-7). 10-6 (90 mg, 0.11 mmol) was dissolved in acetonitrile (2 mL). HF (1 mL, 40% in water) was added. The yellow solution was stirred at rt for overnight. The reaction solution was then slowly added into K₂HPO₄(4.3 g) in water (20 mL) with rapid stirring. The mixture was extracted with DCM (10 mL×3). The combined extracts were dried over sodium sulfate and concentrated in vacuo to yield the crude product 10-7 as a yellow solid (76 mg).
(4S,4aS,5aR,12aS)-4-(dimethylamino)-3,10,12,12a-tetrahydroxy-1,11-dioxo-7-(trifluoromethoxy)-1,4,4a,5,5a,6,11,12a-octahydrotetracene-2-carboxamide (Compound 207). 10-7 (crude, 0.11 mmol, 1 equiv) was dissolved 1,4-dioxane/methanol (5 mL, 1:4 v/v). 10% Pd—C (47 mg, 0.022 mmol Pd, 0.2 equiv) was added. The mixture was purged by bubbling hydrogen through for 5 min and rapidly stirred under 1 atm hydrogen atmosphere at rt for 1 hr. The catalyst was filtered off with a small Celite pad and washed with more methanol (2 mL×3). The filtrate was concentrated in vacuo. Preparative HPLC purification on a Polymerx™ column yielded the desired product Compound 207 as a yellow solid (72 mg, quantitative): ¹H NMR (400 MHz, CD₃OD) δ 7.45 (dd, J=9.2, 0.9 Hz, 1H), 6.91 (d, J=9.2 Hz, 1H), 4.11 (s, 1H), 3.19-2.96 (m, 9H), 2.36-2.30 (m 1H), 2.25-2.20 (m, 1H), 1.69-1.63 (m, 1H); MS (ESI) m/z 499.4 (M+H).
(4S,4aS,5aR,12aS)-4-(dimethylamino)-3,10,12,12a-tetrahydroxy-9-nitro-1,11-dioxo-7-(trifluoromethoxy)-1,4,4a,5,5a,6,11,12a-octahydrotetracene-2-carboxamide (Compound 208). Compound 207 (70 mg, 0.14 mmol, 1 equiv) was dissolved in cold (0°) sulfuric acid (4 mL). A solution of HNO₃in H₂SO₄(0.42 mL, 0.5 M, 0.21 mmol, prepared prior to use by mixing 70% aqueous nitric acid with concentrated sulfuric acid) was added dropwise at 0° C. The deep-red solution was stirred at 0° C. for 1 hr. The resulting yellow solution was added dropwise into diethyl ether (200 mL) with rapid stirring. The yellow solid was collected, washed with more diethyl ether (5 mL×4), and dried in vacuo to yield the crude product Compound 208 as a yellow solid, which was used directly in the next step.
(4S,4aS,5aR,12aS)-9-amino-4-(dimethylamino)-3,10,12,12a-tetrahydroxy-1,11-dioxo-7-(trifluoromethoxy)-1,4,4a,5,5a,6,11,12a-octahydrotetracene-2-carboxamide (Compound 209). Compound 208 (0.10 mmol, crude) was dissolved in 0.1 N HCl/methanol (5 mL). 10% Pd—C (54 mg, 0.02 mmol Pd, 0.2 equiv) was added. The mixture was purged by bubbling hydrogen through for 5 min and rapidly stirred under 1 atm hydrogen atmosphere at rt for 1 hr. The catalyst was filtered off with a small Celite pad and washed with more methanol (5 mL×4). The filtrate was concentrated in vacuo. Preparative HPLC purification on a Polymerx™ column yielded the desired aniline Compound 209 as a brown solid (13 mg, 22%): ¹H NMR (400 MHz, CD₃OD) δ 7.60 (s, 1H), 4.12 (s, 1H), 3.21-2.93 (m, 9H), 2.38-2.32 (m, 1H), 2.25-2.22 (m, 1H), 1.69-1.59 (m, 1H); MS (ESI) m/z 514.1(M+H).
Compound 210.
Compound 209 (4 mg, 0.0068 mmol, 1 equiv) was dissolved in acetonitrile/DMPU (1 mL, 1:3 v/v). Sodium carbonate (4 mg, 0.04 mmol, 6 equiv) and bromoacetyl bromide/acetonitrile (0.041 mL, 0.2 M, 0.0082 mmol, 1.2 equiv, prepared prior to use by dissolving bromoacetyl bromide in anhydrous acetonitrile) was added at rt. The reaction was stirred at rt for 10 min. LC/MS analysis indicated complete consumption of the starting aniline 6. Azetidine (0.0092 mL, 0.14 mmol, 20 equiv) was added. The reaction was stirred at rt for 1 hr. LC/MS analysis indicated complete consumption of the intermediate bromide. The reaction mixture was then added dropwise into 5 mM HCl/diethyl ether (50 mL) with rapid stirring. The solid was collected on a small Celite pad, washed with more 5 mM HCl/diethyl ether (5 mL×4), and eluted with 0.1 N HCl/water (4 mL). The yellow eluent was then directly injected into a preparative HPLC system equipped with a Polymerx™ column for purification. The desired product Compound 210 was obtained as a yellow solid after freeze-drying (3.2 mg, 2 HCl, 69%): ¹H NMR (400 MHz, CD₃OD) δ 8.40 (s, 1H), 4.30-4.40 (m, 4H), 4.10-4.23 (m, 2H), 4.09 (s, 1H), 2.90-3.50 (m, 3H), 3.03 (s, 3H), 2.94 (s, 3H), 2.58-2.70 (m, 1H), 2.42-2.52 (m, 1H), 2.28-2.36 (m, 1H), 2.18-2.25 (m, 1H), 1.58-1.70 (m, 1H); MS (ESI) m/z 611.3 (M+H).
The following compounds were prepared similarly to Compound 210 substituting the appropriate amine (NHR²R³).
Compound 211. ¹HNMR (400 MHz, CD₃OD): δ 8.45 (s, 1H), 4.23 (s, 2H), 4.11-4.09 (m, 3H), 3.19-2.93 (m, 9H), 2.35-2.26 (m, 1H), 2.25-2.17 (m, 1H), 1.68-157 (m, 1H); MS (ESI) m/z 653.1(M+H).
Compound 212. ¹HNMR (400 MHz, CD₃OD): δ 8.39 (s, 1H), 5.53-5.35 (m, 1H), 4.58-4.42 (m, 6H), 4.10 (s, 1H), 3.15-2.93 (m, 9H), 2.35-2.25 (m, 1H), 2.23-2.18 (m, 1H), 1.37-158 (m, 1H); MS (ESI) m/z 629.1(M+H).
Compound 213. ¹H NMR (400 MHz, CD₃OD) δ 8.43 (s, 1H) , 4.11-4.10 (m, 3H), 3.18-2.96 (m,11H), 2.36-2.21 (m, 2H), 1.75-1.63 (m, 3H), 1.49-1.43 (m, 2H), 1.02 (t, J=7.2 Hz, 3H); MS (ESI) m/z 627.2 (M+H).
Compound 214. ¹H NMR (400 MHz, CD₃OD) δ 8.47 (s, 1 H, 4.14 (s, 3H), 3.22-3.00 (m,11H), 2.39-2.26 (m, 2H), 1.79-1.77 (m, 2H), 1.69-1.67 (m, 1H), 1.46-1.45 (m, 4H), 1.02 (t, J=7.2 Hz, 3H); MS (ESI) m/z 641.2(M+H).
Compound 215. ¹H NMR (400 MHz, CD₃OD) δ 8.46 (s, 1H), 4.12 (s, 3H), 3.21-2.98 (m,11H), 2.38-2.31 (m, 2H), 1.79-1.75 (m, 2H), 1.69-1.66 (m, 1H), 1.48-1.39 (m, 6H), 0.98 (t, J=7.2 Hz, 3H); MS (ESI) m/z 655.2(M+H).
Compound 216. ¹H NMR (400 MHz, CD₃OD) δ 8.43 (s, 1H) , 4.10(s, 2H), 4.08 (s, 1H), 3.17-2.94 (m,11H), 2.35-2.27 (m, 1H), 2.25-2.18 (m, 1H), 1.64-1.61 (m, 1H), 1.10 (m, 9H); MS (ESI) m/z 641.1(M+H).
Compound 217. ¹H NMR (400 MHz, CD₃OD) δ 8.34 (s, 1H), 4.04 (s, 2H), 4.01 (s, 1H), 3.11-2.87 (m,11H), 2.26-2.13 (m, 2H), 1.60-1.53 (m, 1H), 1.18-1.05 (m, 1H), 0.67-0.63 (m, 2H), 0.37-0.33 (m, 2H); MS (ESI) m/z 625.2(M+H).
Compound 218. ¹H NMR (400 MHz, CD₃OD) δ 8.44 (s, 1H), 4.35-4.20 (m, 2H), 4.13 (s, 1H), 3.43-3.33 (q, J=7.2 Hz, 2H), 3.22-2.98 (m, 12H), 2.37-2.24 (m, 2H), 2.22-2.09 (m, 1H), 1.45-1.42 (t, J=7.2 Hz, 3H); MS (ESI) m/z 613.2(M+H).
Compound 219. ¹H NMR (400 MHz, CD₃OD) δ 8.49 (s, 1H), 7.44 (s, 4H), 5.06 (brs, 2H), 4.73 (brs, 2H), 4.63 (s, 2H), 4.14 (s, 1H), 3.21-2.98 (m, 9H), 2.38-2.27 (m, 2H), 1.70-1.67 (m, 1H); MS (ESI) m/z 673.2(M+H).
Compound 220. ¹H NMR (400 MHz, CD₃OD) δ 8.44 (s, 1H), 4.10 (s, 3H), 3.50-3.47(m, 1H), 3.18-2.96 (m, 9H), 2.36-2.22 (m, 2H), 1.65-1.63 (m, 1H), 1.38 (t, J=6.8 Hz, 6H); MS (ESI) m/z 613.2(M+H).
Compound 221. ¹H NMR (400 MHz, CD₃OD) δ 8.44 (s, 1H), 4.73-4.68 (m, 1H), 4.45-4.37 (m, 5H), 4.15 (s, 1H), 4.14-4.10 (m, 1H), 3.40 (s, 3H), 3.22-2.92 (m, 9H), 2.40-2.32 (m, 2H), 1.70-1.67 (m, 1H); MS (ESI) m/z 641.3(M+H).
Compound 222. ¹H NMR (400 MHz, CD₃OD) δ 8.35 (s, 1H), 4.81 (t, J=4.4 Hz, 1H), 4.64 (t, J=4.4 Hz, 1H), 4.09 (s, 2H), 4.00 (s, 1H), 3.45 (t, J=4.4 Hz, 1H), 3.39 (t, J=4.4 Hz, 1H), 3.09-2.79 (m, 9H), 2.27-2.09 (m, 2H), 1.62-1.58(m, 1H); MS (ESI) m/z 617.2(M+H).
Compound 223. ¹H NMR (400 MHz, CD₃OD) δ 8.46 (s, 1H), 4.12 (s, 3H), 3.32-2.97 (m, 11H), 2.38-2.27 (m, 2H), 1.99-1.90 (s, 3H), 1.74-1.64 (m, 5H), 1.33 (m, 2H); MS (ESI) m/z 653.1(M+H).
Compound 224. ¹H NMR (400 MHz, CD₃OD) δ 8.34 (s, 1H), 4.02 (s, 1H), 4.00 (s, 2H), 3.10 (q, J=7.2 Hz, 2H), 3.10-2.87 (m, 9H), 2.28-2.15 (m, 2H),1.57-1.46 (m, 1H), 1.27 (t, J=7.2 Hz, 3H); MS (ESI) m/z 599.1(M+H).
Compound 225. ¹H NMR (400 MHz, CD₃OD) δ 8.43 (s, 1H), 4.35-4.20 (m, 2H), 4.11 (s, 1H), 3.38-2.94 (m, 14H), 2.35-2.21(m, 2H), 1.89-1.79 (m, 2H), 1.68-1.63 (m, 1H), 1.09 (t, J=7.2 Hz, 3H); MS (ESI) m/z 627.1 (M+H).
Compound 226. ¹H NMR (400 MHz, CD₃OD) δ 8.35 (s, 1H), 4.04 (s, 2H), 4.00 (s, 1H), 3.61 (t, J=4.8 Hz, 2H), 3.38 (s, 3H), 3.21 (t, J=4.8 Hz, 2H), 3.15-2.86 (m, 9H), 2.18-2.09 (m, 2H), 1.61-1.52 (m, 1H); MS (ESI) m/z 629.1(M+H).
Compound 227. ¹H NMR (400 MHz, CD₃OD) δ 8.34 (s, 1H), 5.47-5.32 (m, 1H), 4.34 (s, 2H), 4.02 (s, 1H), 3.98-3.82 (m, 2H), 3.3.48-3.32 (m, 2H), 3.11-2.87 (m, 9H), 2.47-2.36 (m, 2H), 2.34-2.19 (m, 2H), 1.58-1.50(m, 1H); MS (ESI) m/z 643.1(M+H).
Compound 228. ¹H NMR (400 MHz, CD₃OD) δ 8.30 (s, 1H), 8.06 (s, 1H), 7.94 (d, J=4.8 Hz, 1H), 7.73-7.67 (m, 2H), 4.17 (s, 2H), 4.02 (s, 1H), 3.24-2.86 (m, 9H), 2.25-2.12 (m, 2H), 1.59-1.49(m, 1H); MS (ESI) m/z 648.1(M+H).
Compound 229. ¹H NMR (400 MHz, CD₃OD) δ 8.35 (s, 1H), 8.02 (d, J=7.2 Hz, 2H), 6.84 (d, J=7.2 Hz, 2H), 5.17 (s, 2H),4.09 (s, 1H), 3.28-2.936 (m, 9H), 2.32-2.19 (m, 2H), 1.66-1.56(m, 1H); MS (ESI) m/z 648.1(M+H).
Compound 230. ¹H NMR (400 MHz, CD₃OD) δ 8.43 (s, 1H), 4.07 (s, 3H), 3.20-2.94 (m, 11H), 2.35-2.29 (m, 1H), 2.25-2.17 (m, 1H),1.93-1.79 (m, 2H), 1.78-1.58 (m, 1H), 1.05 (t, J=7.2 Hz, 3H); MS (ESI) m/z 613.2 (M+H).
Compound 231. ¹H NMR (400 MHz, CD₃OD) δ 8.42 (s, 1H), 4.12 (s, 3H), 3.19-2.87 (m, 11H), 2.38-2.19 (m, 2H), 1.90-1.61 (m, 6H), 1.38-1.19 (m, 4H), 1.15-1.01 (m, 2H); MS (ESI) m/z 667.2 (M+H).
Compound 232. ¹H NMR (400 MHz, CD₃OD) δ 8.35 (s, 1H), 4.01 (s, 3H), 3.14-2.73 (m, 11H), 2.26-2.13 (m, 2H), 2.03-2.01 (m, 1H), 1.60-1.51 (m, 1H), 0.99-0.92 (t, J=6.8 Hz, 6H); MS (ESI) m/z 627.2 (M+H).
Compound 233. ¹H NMR (400 MHz, CD₃OD) δ 8.34 (s, 1H), 4.12 (s, 2H), 4.01 (s, 1H), 3.56-3.53 (m, 2H), 3.11-2.73 (m, 11H), 2.27-2.13 (m, 2H), 1.89-1.76 (m, 5H), 1.60-1.57 (m, 2H); MS (ESI) m/z 639.2 (M+H).
Compound 234. ¹H NMR (400 MHz, CD₃OD) δ 8.35 (s, 1H), 4.09 (s, 1H), 4.02 (s, 2H), 3.89-3.70 (m, 1H), 3.11-2.86 (m, 9H), 2.27-2.02 (m, 6H), 1.91-1.71 (m, 2H), 1.60-1.40 (m, 1H); MS (ESI) m/z 625.3 (M+H).
Compound 235. ¹H NMR (400 MHz, CD₃OD) δ 8.44 (s, 1H), 4.31 (s, 2H), 4.12 (s, 1H), 4.12-3.78 (m, 4H), 3.78-3.44 (m, 4H), 3.22-2.90 (m, 9H), 2.38-2.23 (m, 2H), 1.71-1.61 (m, 1H); MS (ESI) m/z 641.1 (M+H).
Compound 236. ¹H NMR (400 MHz, CD₃OD) δ 8.42 (s, 1H), 4.27 (s, 2H), 4.11 (s, 1H), 3.40-3.31 (m, 4H), 3.21-2.96 (m, 9H), 2.36-2.23 (m, 2H), 1.69-1.60 (m, 1H), 1.40 (t, J=7.2 Hz, 6H); MS (ESI) m/z 627.2 (M+H).
Compound 237. ¹H NMR (400 MHz, CD₃OD) δ 8.46 (s, 1H), 4.11 (s, 3H), 3.31-2.94 (m, 10H), 2.40-2.20 (m, 2H), 2.20-2.00 (m, 2H), 1.94-1.82 (m, 2H), 1.68-1.56 (m, 1H), 1.48-1.32 (m, 4H), 1.28-1.16 (m, 2H); MS (ESI) m/z 653.3 (M+H).
Compound 238. ¹H NMR (400 MHz, CD₃OD) δ 8.41 (s, 1H), 7.46-7.26 (m, 2H), 7.25-7.11 (m, 3H), 4.16 (s, 2H), 4.01 (s, 1H), 3.15-2.78 (m, 9H), 2.26-2.11 (m, 2H), 1.58-1.49 (m, 1H); MS (ESI) m/z 647.0 (M+H).
Compound 239. ¹H NMR (400 MHz, CD₃OD) δ 8.43 (s, 1H), 4.21 (s, 2H), 4.11 (s, 1H), 3.18-2.84 (m, 9H), 2.90-2.84 (m, 1H), 2.35-2.22 (m, 2H), 1.69-1.59 (m, 1H), 0.95-0.93 (m, 4H); MS (ESI) m/z 611.4(M+H).
Compound 240. ¹H NMR (400 MHz, CD₃OD) δ 8.43 (s, 1H), 6.38 (tt, J=60, 1.6 Hz, 1H), 4.21 (s, 2H), 4.12 (s, 1H), 3.68 (td, J=7.2, 1.6 Hz, 2H), 3.18-2.90 (m, 9H), 2.36-2.18 (m, 2H), 1.69-1.58 (m, 1H); MS (ESI) m/z 635.1 (M+H).
Compound 241. ¹H NMR (400 MHz, CD₃OD) δ 8.46 (s, 1H), 5.56-5.43 (m, 1H), 4.45 (s, 2H), 4.12 (s, 1H), 4.13-3.90 (m, 2H), 3.58-3.41 (m, 2H), 3.20-2.90 (m, 9H), 2.38-2.23 (m, 4H), 1.71-1.61 (m, 1H); MS (ESI) m/z 643.2 (M+H).
Compound 242. ¹H NMR (400 MHz, CD₃OD) δ 8.35-8.33 (m, 1H), 4.22-4.18 (m, 2H), 4.02 (s, 1H), 3.92-3.87 (m, 1H), 3.39-3.28 (m, 1H), 3.09-2.86 (m, 11H), 2.74-2.60 (m, 2H), 2.27-2.12 (m, 2H), 1.71-1.45 (m, 7H); MS (ESI) m/z 665.2 (M+H).
Compound 243. ¹H NMR (400 MHz, CD₃OD) δ 8.44 (s, 1H), 4.12 (s, 1H), 4.08 (s, 2H), 3.18-2.90 (m, 11H), 2.78-2.66 (m, 1H), 2.38-2.15 (m, 4H), 2.08-1.80 (m, 3H), 1.71-1.54 (m, 1H); MS (ESI) m/z 639.2 (M+H).
Compound 244. ¹H NMR (400 MHz, CD₃OD) δ 8.38 (s, 1H), 4.20 (s, 2H), 4.02 (s, 1H), 3.18-2.82 (m, 15H), 2.32-2.11 (m, 2H), 1.66-1.52 (m, 1H); MS (ESI) m/z 599.1 (M+H).
Compound 245. ¹H NMR (400 MHz, CD₃OD) δ 8.46 (s, 1H), 4.09 (s, 3H), 2.90-3.30 (m, 3H), 3.03 (s, 3H), 2.94 (s, 3H), 2.29-2.37 (m, 1H), 2.18-2.25 (m,1H), 1.58-1.70 (m, 1H), 1.41 (s, 9H); MS (ESI) m/z 627.4 (M+H).
Compound 246. ¹H NMR (400 MHz, CD₃OD) δ 8.44 (s, 1H), 4.33 (s, 2H), 4.10 (s, 1H), 3.75-3.85 (m, 2H), 2.90-3.50 (m, 7H), 3.03 (s, 3H), 2.94 (s, 3H), 2.28-2.37 (m, 1H), 2.00-2.25 (m, 5H), 1.58-1.70 (m, 1H); MS (ESI) m/z 625.1 (M+H).
Compound 263. ¹H NMR (400 MHz, CD₃OD) δ 8.46 (s, 1H), 4.12 (s, 1H), 4.11 (s, 2H), 3.70-3.61 (m, 1H), 3.22-2.93 (m, 9H), 2.38-2.10 (m, 4H), 1.92-1.80 (m, 2H), 1.76-1.56 (m, 5H); MS (ESI) m/z 639.2 (M+H).
The following compounds were prepared similarly to Compound 210 substituting bromoacetyl bromide and an amine (NHR²R³) with an acid chloride (appropriately protected if needed) or a carboxylic acid (appropriately protected if needed) and a coupling reagent such as HATU.
Compound 247. ¹H NMR (400 MHz, CD₃OD) δ 8.34 (s, 1H), 7.88 (d, J=7.6 Hz, 2H), 7.55-7.45 (m, 3H), 4.03 (s, 1H), 3.13-2.88 (m, 9H), 2.33-2.28 (m, 1H), 2.19-2.13 (m, 1H), 1.64-1.53 (m, 1H); MS (ESI) m/z 611.4(M+H).
Compound 248. ¹H NMR (400 MHz, CD₃OD) δ 8.37 (s, 1H), 7.50-7.41 (m, 3H), 7.16 (dd, J=8.0 Hz, 1.6 Hz, 1H), 4.09 (s, 1H), 3.86 (s, 3H),3.18-2.97 (m, 9H), 2.37-2.29 (m, 1H), 2.24-2.20 (m, 1H), 1.69-1.62 (m, 1H); MS (ESI) m/z 648.2(M+H).
Compound 249. ¹H NMR (400 MHz, CD₃OD) δ 8.24 (s, 1H), 8.16 (s, 1H), 8.12 (d, J=8.0 Hz, 1H), 7.83 (d, J=8.0 Hz, 1H), 7.66 (t, J=8.0 Hz, 1H), 4.01 (s, 1H), 3.12-2.73 (m, 9H), 2.26 (m, 1H), 2.16-2.12 (m, 1H), 1.63-1.52 (m, 1H); MS (ESI) m/z 686.1(M+H).
Compound 250. ¹H NMR (400 MHz, CD₃OD) δ 8.29 (s, 1H), 7.88 (d, J=3.6 Hz, 1H), 7.77 (d, J=4.8 Hz, 1H), 7.21 (t, J=4.4 Hz, 1H), 4.10 (s, 1H), 3.19-2.96 (m, 9H), 2.38-2.30 (m, 1H), 2.28-2.20 (m, 1H), 1.70-1.60 (m, 1H); MS (ESI) m/z 624.1(M+H).
Compound 251. ¹H NMR (400 MHz, CD₃OD) δ 8.29 (s, 1H), 7.98 (d, J=8.4 Hz, 2H), 7.44 (d, J=8.8 Hz, 2H), 4.03 (s, 1H), 3.18 (s, 6H), 3.11-2.87 (m, 9H), 2.25-2.20 (m, 1H), 2.16-2.13 (m, 1H), 1.58-1.55 (m, 1H); MS (ESI) m/z 661.1(M+H).
Compound 252. ¹H NMR (400 MHz, CD₃OD) δ 8.25 (s, 1H), 8.17 (s, 1H), 8.04 (d, J=7.6 Hz, 1H), 7.85 (dd, J=7.2 Hz, 1.6 Hz,1H), 7.70 (t, J=8.0 Hz, 1H), 4.04 (s, 1H), 3.20 (s, 6H), 3.12-2.88 (m, 9H), 2.26 (m, 1H), 2.18-2.15 (m, 1H), 1.58-1.55 (m, 1H); MS (ESI) m/z 661.1(M+H).
Compound 253. ¹H NMR (400 MHz, CD₃OD) δ 8.26 (s, 1H), 8.10 (d, J=7.6 Hz, 1H), 7.95 (d, J=8.0 Hz, 1H), 7.80 (t, J=7.6Hz, 1H), 7.65 (t, J=7.6 Hz, 1H), 4.03 (s, 1H), 3.26 (s, 6H), 3.14-2.87 (m, 9H), 2.29-2.25 (m, 1H), 2.13-2.10 (m, 1H), 1.63-1.56 (m, 1H); MS (ESI) m/z 661.1(M+H).
Compound 254. ¹H NMR (400 MHz, CD₃OD) δ 9.38 (s, 1H), 9.08-9.04 (m, 2H), 8.37 (s, 1H), 8.22 (t, J=7.6 Hz, 1H), 4.13 (s, 1H), 3.22-2.98 (m, 9H), 2.36 (m, 1H), 2.13-2.10 (m, 1H), 1.70-1.63 (m, 1H); MS (ESI) m/z 619.0(M+H).
Compound 255. ¹H NMR (400 MHz, CD₃OD) δ 9.07 (d, J=5.6 Hz, 2H), 8.49 (d, J=5.6 Hz, 2H), 8.37 (s, 1H), 4.12 (s, 1H), 3.22-2.97 (m, 9H), 2.37 (m, 1H), 2.29-2.23 (m, 1H), 1.70-1.63 (m, 1H); MS (ESI) m/z 619.0(M+H).
Compound 256. ¹H NMR (400 MHz, CD₃OD) δ 8.72-8.70 (m, 2H), 8.23 (d, J=7.2 Hz, 1H), 8.06 (t, J=7.6 Hz,1H), 7.65 (dd, J=10.8, 6.8 Hz, 1H), 4.12 (s, 1H), 3.19-2.97 (m, 9H), 2.32-2.25 (m, 1H), 2.26-2.23 (m, 1H), 1.67-1.64 (m, 1H); MS (ESI) m/z 619.0(M+H).
Compound 257. ¹H NMR (400 MHz, CD₃OD) δ 8.33 (s, 1H), 4.09-4.08 (m, 2H), 3.45-3.42 (m, 1H), 3.16-2.93 (m, 10H), 2.34-2.18 (m, 3H), 1.95-1.88 (m, 2H), 1.88-1.60 (m, 4H); MS (ESI) m/z 625.1 (M+H)
Compound 258. ¹H NMR (400 MHz, CD₃OD) δ 8.44 (s, 1H), 5.20 (t, J=9.2 Hz, 1H), 4.19-4.07 (m, 3H), 3.19-2.92 (m, 12H), 2.66-2.61 (m, 2H), 2.33 (m, 1H), 2.22-2.03 (m, 1H),1.66-1.63 (m, 1H); MS (ESI) m/z 611.1 (M+H)
Compound 259. ⁱH NMR (400 MHz, CD₃OD) δ 8.34 (s, 1H), 4.39 (t, J=7.6 Hz, 1H), 4.10 (s, 1H), 3.76-3.74 (m, 1H), 3.27-2.93 (m, 12H), 2.70-2.63 (m, 1H), 2.34-2.15 (m, 6H), 1.63-1.60 (m, 1H); MS (ESI) m/z 625.1(M+H).
Compound 260. ¹H NMR (400 MHz, CD₃OD) δ 8.36 (s, 1H), 5.20 (t, J=8.0 Hz, 1H), 4.09-4.07 (m, 1H), 4.02 (s, 1H), 3.96-3.73 (m, 1H), 3.21-2.72 (m, 11H), 2.59-2.13 (m, 2H), 1.56-1.54 (m, 1H); MS (ESI) m/z 597.1 (M+H).
Compound 261. ¹H NMR (400 MHz, CD₃OD) δ 8.33 (s, 1H), 4.57 (t, J=7.6 Hz, 1H), 4.09 (s, 1H), 3.47-3.36 (m, 2H), 3.18-2.93 (m, 9H), 2.54-2.52 (m, 1H), 2.34-2.31 (m,1H),2.27-2.07 (m, 4H),1.63-1.58 (m,1H); MS (ESI) m/z 611.1 (M+H).
Compound 262. Compound 262 was prepared from 10-6-2 via aqueous HF treatment followed by hydrogenation similarly to Compound 210: ¹H NMR (400 MHz, CD₃OD) δ 8.00 (s, 1H), 4.09 (s, 1H), 2.80-3.50 (m, 9H), 2.32-2.42 (m, 1H), 2.19-2.27 (m, 1H), 1.58-1.70 (m, 1H); MS (ESI) m/z 543.3 (M+H).

Example 11

Synthesis of Compounds of Formula III, wherein Y is NR²R³

In Scheme 11, “R^D” represents C₁-C₆alkyl; and “R^E” represents C₁-C₆alkyl or phenyl.

Phenyl 2-hydroxy-6-methyl-3-nitro-5-(trifluoromethoxy)benzoate (11-1)

Compound 10-4 (12.2 mmol) was dissolved in 1,2-dichloroethane (18 mL) and H₂O (18 mL). Tetrabutylammonium bromide (197 mg, 0.61 mmol, 0.05 eq) was added, followed by slow addition of nitric acid (70%, 1.56 mL, 24.4 mmol, 2.0 eq) in order to maintain temperature below 25° C. After stirred at rt for 20 h, the reaction mixture was diluted with dichloromethane and layers were separated. The organic layer was further washed with H₂O, brine, dried (Na₂SO₄) and concentrated to give compound 11-1 as yellow solid, which was pure enough to use directly for the next step.
Phenyl 2-(benzyloxy)-6-methyl-3-nitro-5-(trifluoromethoxy)benzoate (11-2). 11-1 obtained from the above (12.2 mmol) was dissolved in acetone (25 mL). Potassium iodide (101 mg, 0.61 mmol, 0.05 eq), K₂CO₃(3.37 g, 24.4 mmol, 2 eq), and benzylbromide (1.74 mL, 14.6 mmol, 1.2 eq) were added. The resulting mixture was heated to reflux for 4 h. After cooled to rt, the solution was filtered through a bed of Celite. The solid cake was further washed with three portions of EtOAc. The combined organic solution was concentrated. The residue was dissolved in EtOAc and washed with H₂O, brine, dried (Na₂SO₄) and concentrated to give compound 11-2 as off-white solid, which was used directly for the next step without further purification.
Phenyl 3-amino-2-(benzyloxy)-6-methyl-5-(trifluoromethoxy)benzoate (11-3). 11-2 prepared from the last step (12.2 mmol) was dissolve in THF (73 mL). Solution of Na₂S₂O₄(12.49 g, 61.0 mmol, 5 equiv) in H₂O (49 mL) was added at 0° C. After stirred at rt for 16 h, layers were separated. The aqueous layer was further extracted with EtOAc three times. The combined organic layers were washed with brine, dried (Na₂SO₄) and concentrated. Further purification with flash chromatography (silica gel, 85:15 hexanes/EtOAc) yielded compound 11-3 as off-white solid (3.45 g): ¹H NMR (400 MHz, CDCl₃) δ 7.44-7.34 (m, 7H), 7.28-7.25 (m, 1H), 7.14-7.12 (m, 2H), 6.73 (s, 1H), 5.01 (s, 2H), 3.86 (br s, 2H), 2.29 (s, 3H); MS (ESI) m/z 416.3 (M−H), calcd for C₂₂H₁₇F₃NO₄416.12.
Phenyl 2-(benzyloxy)-3-(bis(tert-butoxycarbonyl)amino)-6-methyl-5-(trifluoromethoxy)benzoate (11-4). Di-tert-butyl dicarbonate (4.51 g, 20.66 mmol, 2.5 eq) and DMAP (50 mg, 0.41 mmol, 0.05 eq) were added to the solution of compound 11-3 (3.45 g, 8.26 mmol, 1 eq) in anhydrous DMF (33 mL). The resulting mixture was stirred at rt and the reaction was monitored by LC-MS. After SM was completely consumed, the reaction was diluted with EtOAc. The solution was washed with H₂O three times, brine, dried over Na₂SO₄, filtered and concentrated. Further purification with flash chromatography (silica gel, 95:5 hexanes/EtOAc) yielded compound 11-4 as wax-like solid (4.12 g):¹H NMR (400 MHz, CDCl₃) δ 7.40-7.31 (m, 7H), 7.28-7.25 (m, 1H), 7.15 (s, 1H), 6.98 (d, J=7.8 Hz, 1H), 4.94 (s, 2H), 2.40 (s, 3H), 1.37 (s, 18H); MS (ESI) m/z 616.4 (M−H), calcd for C₃₂H₃₃F₃NO₈616.22.
Intermediate 11-5. 11-5 was prepared from compound 11-4 and eone 1-6 under similar conditions used in the preparation of compound 2-5 (see Example 2). The crude product was purified by flash chromatography (silica gel, 95:5 to 85:15 hexanes/EtOAc) gave desired product as light yellow foam: ¹H NMR (400 MHz, CDCl₃) δ 15.88 (s, 1H), 7.52-7.30 (m, 11H), 5.35 (s, 2H), 4.98 (d, J=9.8 Hz, 1H), 4.79 (d, J=9.8 Hz, 1H), 3.96 (d, J=10.4 Hz, 1H), 3.26 (dd, J=16.5, 4.9 Hz, 1H), 3.01-2.93 (m, 1H), 2.60-2.40 (m, 9H), 2.16-2.13 (m, 1H), 1.34 (s, 18H), 0.81 (s, 9H), 0.26 (s, 3H), 0.13 (s, 3H); MS (ESI) m/z 1006.7 (M+H), calcd for C₅₂H₆₃F₃N₃O₁₂Si 1006.41.
(4aS,11aR,12aS,13S)-8-amino-3,7-bis(benzyloxy)-4a-(tert-butyldimethylsilyloxy)-13-(dimethylamino)-5-hydroxy-10-(trifluoromethoxy)-11a,12,12a,13-tetrahydrotetraceno[2,3-d]isoxazole-4,6(4aH,11H)-dione (11-6). 11-6 was prepared from 11-5 under similar conditions used in the preparation of compound 2-6 (see Example 2). Purification of the crude product by flash chromatography (silica gel, 85:15 hexanes/EtOAc) gave desired product as bright yellow foam: ¹H NMR (400 MHz, CDCl₃) δ 16.02 (s, 1H), 7.52-7.26 (m, 10H), 6.77 (s, 1H), 5.36 (s, 2H), 4.90 (s, 2H), 3.97 (br s, 3H), 3.12 (dd, J=16.5, 4.9 Hz, 1H), 2.98-2.88 (m, 1H), 2.60-2.40 (m, 9H), 2.16-2.10 (m, 1H), 0.83 (s, 9H), 0.28 (s, 3H), 0.14 (s, 3H); MS (ESI) m/z 806.5 (M+H), calcd for C₄₂H₄₇F₃N₃O₈Si 806.30.
Compound 264. Compound 264 was prepared by compound 11-6 and propionaldehyde by similar procedures used in the preparation of Compound 180.The crude product was purified by HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ, RP-γ 100 R column [30×21.20 mm, 10 micron; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH3CN; injection volume: 4.0 mL (0.05 N HCl/water); gradient: 15→60% B over 15 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 16.95-18.25 min, were collected and freeze-dried to give product as a yellow solid: ¹H NMR (400 MHz, CD₃OD) δ 7.36 (s, 1H), 4.12 (s, 1H), 3.36-3.25 (m, 2H), 3.20-2.90 (m, 9H), 2.39-2.21 (m, 2H), 1.78-1.58 (m, 3H), 1.04 (t, J=7.3 Hz, 3H); MS (ESI) m/z 556.4 (M+H), calcd for C₂₅H₂₉F₃N₃O₈556.18.
Compound 265. Compound 265 was prepared from 11-6 and isovaleraldehyde by similar procedures used in the preparation of Compound 180. The crude product was purified by HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-γ 100 R column [30×21.20 mm, 10 micron; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 4.0 mL (0.05 N HCl/water); gradient: 15→60% B over 15 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 16.75-18.30 min, were collected and freeze-dried to give product as a yellow solid: ¹H NMR (400 MHz, CD₃OD) δ 7.32 (s, 1H), 4.11 (s, 1H), 3.48-3.30 (m, 2H), 3.20-2.90 (m, 9H), 2.38-2.21 (m, 2H), 1.80-1.58 (m, 4H), 0.98 (d, J=6.4 Hz, 6H); MS (ESI) m/z 584.4 (M+H), calcd for C₂₇H₃₃F₃N₃O₈584.21.
Compound 266. Compound 266 was prepared from 11-6 and ethanesulfonyl chloride by similar procedures used in the preparation of Compound 153. The crude product was purified by HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-γ 100 R column [30×21.20 mm, 10 micron; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 4.0 mL (0.05 N HCl/water); gradient: 20→60% B over 15 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 11.10-12.00 min, were collected and freeze-dried to give product as a yellow solid: ¹H NMR (400 MHz, CD₃OD) δ 7.62 (s, 1H), 4.09 (s, 1H), 3.18-2.85 (m, 11H), 2.36-2.19 (m, 2H), 1.69-1.59 (m, 1H), 1.35 (t, J=7.3 Hz, 3H); MS (ESI) m/z 606.3 (M+H), calcd for C₂₄H₂₇F₃N₃O₁₀S 606.13.
Compound 267. Compound 267 was prepared from compound 11-6 and isobutanesulfonyl chloride by similar procedures used in the preparation of Compound 153. The crude product was purified by HPLC on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-γ 100 R column [30×21.20 mm, 10 micron; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 4.0 mL (0.05 N HCl/water); gradient: 20→60% B over 15 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 13.40-14.50 min, were collected and freeze-dried to give product as a yellow solid: ¹H NMR (400 MHz, CD₃OD) δ 7.61 (s, 1H), 4.10 (s, 1H), 3.18-2.90 (m, 11H), 2.28-2.18 (m, 3H), 1.69-1.59 (m, 1H), 1.05 (d, J=6.8 Hz, 6H); MS (ESI) m/z 634.4 (M+H), calcd for C₂₆H₃₁F₃N₃O₁₀S 634.16.
Compound 268. Compound 268 was prepared from compound 11-6 and benzenesulfonyl chloride by similar procedures used in the preparation of Compound 153. ¹H NMR (400 MHz, CD₃OD) δ 7.80 (d, J=8.0 Hz, 2H), 7.63 (s, 1H), 7.58-7.56 (m, 1H), 7.47 (t, J=8.0 Hz, 2H), 4.14 (s, 1H), 3.12-2.90 (m, 9H), 2.29-2.12 (m, 2H), 1.65-1.53 (m, 1H); MS (ESI) m/z 654.1 (M+H).

Example 12

Synthesis of Compounds of Formula IV

In Scheme 12, “PG” represents a protecting group; “R^F” represents benzyl or BOC; “R^F′” represents benzyl or hydrogen; and R^Grepresents optionally substituted heterocyclyl.
1-methoxy-4-(trifluoromethyObenzene (12-2). To an acetone solution of 4-(Trifluoromethyl)phenol (12-1, 125 g, 0.71 mol) was added potassium carbonate (137 g, 0.99 mol, 1.4 equiv) and MeI (125 mL, 1.99 mol, 2.8 equiv). The reaction was stirred at 25° C. overnight and concentrated. The resulting mixture was diluted with 500 mL of H₂O and extracted with t-butylmethyl ether. The combined extracts were dried (Na₂SO₄) and concentrated to give 110 g of crude 12-2: ¹H NMR (400 MHz, CDCl₃) δ 7.48 (d, J=8.5 Hz, 2H), 6.89 (d, J=8.5 Hz, 2H), 3.78 (s, 3H).
2-methoxy-5-(trifluoromethyObenzoic acid (12-3). nBuLi (276 mL, 2.5 M, 0.69 mol, 1.1 equiv) and KOtBu (77 g, 0.69 mol, 1.1 equiv) were added to a THF solution (1 L) of crude 12-2 (110 g) at −78° C. The reaction was stirred at −78° C. for 4 h. Dry CO₂was bubbled into the solution at −78° C. for 1 h. The reaction was allowed to warm to 25° C. over 0.5 h. NaOH (6N, 300 mL) and H₂O were added to the resulting reaction mixture. The mixture was extracted with t-butylmethyl ether (400 mL×2). The aqueous layer was acidified with HCl (6N) to pH 1 and extracted with EtOAc (300 mL×4). The combined EtOAc extracts were concentrated and re-dissolved in CH₂Cl₂. The solution was dried (Na₂SO₄), filtered through a pad of Celite and concentrated. Flash chromatography on silica gel (1:1 PE/EtOAc) yielded 82 g of compound 12-3 (53% for 2 steps): ¹H NMR (400 MHz, CDCl₃) δ 8.45 (s, 1H), 7.81 (d, J=8.0 Hz, 1H), 7.16 (d, J=8.0 Hz, 1H), 4.13 (s, 3H); MS (ESI) m/z 221.0 (M+H).
6-methoxy-2-methyl-3-(trifluoromethyl)benzoic acid (12-4). To a THF solution of 2,2,6,6-tetramethylpiperidine (312 mL, 1.85 mol, 5 equiv) was added nBuLi (740 mL, 2.5 M, 1.85 mol, 5 equiv). The reaction was stirred at 0° C. for 45 min. To the reaction was added a THF solution (800 mL) of crude 12-3 (82 g, 0.37 mol) at 0° C. The reaction was stirred at 0° C. for 4 h. The reaction was cooled to −78° C. and added dropwise to a THF solution (200 mL) of MeI (200 mL, 3.73 mol, 10 equiv) at −78° C. The reaction was allowed to warm to 25° C. over 1 h. The reaction was quenched with HCl (6 N) and extracted with EtOAc. The combined EtOAc extracts were dried (Na₂SO₄) and concentrated to give the crude product. The crude product was purified by HPLC. Yielded 45g of compound 12-4 (52%): ¹H NMR (400 MHz, CDCl₃) δ 7.64 (d, J=8.0 Hz, 1H), 6.81 (d, J=8.0 Hz, 1H), 3.90 (s, 3H), 2.48 (s, 3H); MS (ESI) m/z 235.1 (M+H).
Phenyl 6-methoxy-2-methyl-3-(trifluoromethyl)benzoate (12-5). Oxalyl chloride (66 mL, 0.77 mol, 4 equiv) was added to a CH₂Cl₂solution (500 mL, anhydrous) of compound 12-4 (45 g, 0.192 mol). DMF (0.5 mL) was added to the resulting mixture. The reaction was stirred at 25° C. for 1 h and concentrated. The resulting solid was re-dissolved in 500 mL of anhydrous CH₂Cl₂. Phenol (36.1 g, 0.38 mol, 2 equiv), DMAP (4.6 g, 38 mmol, 0.2 equiv), and triethylamine (105 mL, 0.77 mol, 4 equiv) were added to the reaction mixture. The reaction was stirred at 25° C. for 12 h and concentrated. EtOAc and H₂O were added to the residue. The organic layer was washed with NaOH (1 N), H₂O, and brine, dried (Na₂SO₄), and concentrated to give 52.0 g of crude 12-5: ¹H NMR (400 MHz, CDCl₃) δ 7.65-7.75 (m, 1H), 7.40-7.50 (m, 3H), 7.20-7.35 (m, 2H), 6.85-6.90 (m, 1H), 3.95 (s, 3H), 2.54 (s, 3H).
Phenyl 6-hydroxy-2-methyl-3-(trifluoromethyl)benzoate (12-6). BBr₃(95 g, 0.38 mol, 2 equiv) was added to a CH₂Cl₂solution (500 mL) of crude 12-5 (52.0 g,) at −78° C. The reaction was stirred from −78° C. to 25° C. for 1.5 h, quenched with saturated NaHCO₃and concentrated. EtOAc and H₂O were added to the reaction mixture. The aqueous layer was extracted with EtOAc. The combined EtOAc extracts were dried (Na₂SO₄) and concentrated to yield 51 g of crude 12-6.
Phenyl 6-(benzyloxy)-2-methyl-3-(trifluoromethyl)benzoate (12-7-1). NaH (466 mg, 60% in oil, 11.6 mmol, 1.2 equiv) was added to a DMF solution (30 mL) of crude 12-6 (3 g). The reaction was stirred at 25° C. for 0.5 h. To the resulting reaction was added BnBr (1.6 mL, 13.6 mmol, 1.4 equiv) and stirred at 25° C. for 12 h. The resulting mixture was quenched with H₂O and extracted with EtOAc. The combined EtOAc extracts were washed with NaOH (1N), H₂O, and brine, dried (Na₂SO₄), and concentrated to give the crude product. Flash chromatography on silica gel (40:1 hexanes/EtOAc) yielded 3.0 g of compound 12-7-1 (81% 2 steps) as a light yellow solid: ¹H NMR (400 MHz, CDCl₃) δ 7.60-7.70 (m, 1H), 7.15-50 (m, 8H), 7.03-7.10 (m, 2H), 6.85-6.95 (m, 1H), 5.19 (s, 2H), 2.52 (s, 3H).
Phenyl 6-(tert-butoxycarbonyloxy)-2-methyl-3-(trifluoromethyl)benzoate (12-7-2). Boc₂O (82.8 g, 0.38 mol, 2 equiv), DMAP (4.6 g, 38 mmol, 0.2 equiv) were added to a CH₂Cl₂solution (150 mL) of crude 12-6 (51 g). The reaction was stirred at 25° C. for 3 h. The resulting mixture was quenched with H₂O and extracted with EtOAc.
The combined EtOAc extracts were washed with brine, dried (Na₂SO₄), and concentrated to give the crude product. Flash chromatography on silica gel (30:1 PE/EtOAc) yielded 40.0 g of compound 12-7-2 (53% 2 steps) as a white solid: ¹H NMR (400 MHz, CDCl₃) δ 7.76 (d, J=8.0 Hz, 1H), 7.45-7.41 (m, 2H), 7.30-7.24 (m, 4H), 2.58 (s, 3H), 1.46 (s, 9H); MS (ESI) m/z 397.2 (M+H).
(4aS,11aR,12aS,13S)-3,7-bis(benzyloxy)-4a-(tert-butyldimethylsilyloxy)-13-(dimethylamino)-5-hydroxy-10-(trifluoromethyl)-11a,12,12a,13-tetrahydrotetraceno[2,3-d]isoxazole-4,6(4aH,11H)-dione (12-8-1). A THF solution (3 mL) of 12-7-1 (100 mg, 0.26 mmol, 1.5 equiv) and enone 1-6 (84 mg, 0.17 mmol) was added TMEDA (0.23 mL, 1.56 mmol, 9.2 equiv) at −78° C. LDA (2.2 mL, 10% wt suspension, 1.5 mmol, 8.8 equiv) was added to the reaction at −78° C. The reaction was stirred at −78° C. for 30 min and allowed to warm to 25° C. over 1 h, quenched with saturated NH₄Cl, and extracted with EtOAc. The combined EtOAc extracts were dried (Na₂SO₄) and concentrated to yield the crude product.
Preparative reverse phase HPLC purification on a Waters Autopurification system using a Sunfire Prep C18 OBD column [5 μm, 19×50 mm; flow rate, 20 mL/min; Solvent A: H₂O with 0.1% HCO₂H; Solvent B: CH₃CN with 0.1% HCO₂H; injection volume: 4.0 mL (CH₃CN); gradient: 80→100% B over 15 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 7.8-9.2 min, were collected and concentrated on a RotaVap at 25° C. to remove most of the acetonitrile. The resulting mostly aqueous solution was extracted with EtOAc. The combined EtOAc extracts were dried (Na₂SO₄) and concentrated to give 35 mg of pure 12-8-1 (26%).
(4aS,11aR,12aS,13S)-3-(benzyloxy)-4a-(tert-butyldimethylsilyloxy)-13-(dimethylamino)-5,7-dihydroxy-10-(trifluoromethyl)-11a,12,12a,13-tetrahydrotetraceno[2,3-dfisoxazole-4,6(4aH,11H)-dione (12-8-2). A THF solution (3 mL) of 12-7-2 (500 mg, 1.26 mmol, 3 equiv) and enone (203 mg, 0.42 mmol) was added TMEDA (0.75 mL, 3.78 mmol, 30 equiv) at −78° C. LDA (2.52 mL, 1M, 2.52 mmol, 6 equiv) was added to the reaction at −78° C. The reaction was stirred at −78° C. for 30 min and allowed to warm to 25° C. over 1 h, quenched with saturated NH₄Cl, and extracted with EtOAc. The combined EtOAc extracts were dried (Na₂SO₄) and concentrated to yield the crude product. Preparative reverse phase HPLC purification on a Waters Autopurification system using a Sunfire Prep C18 OBD column and freeze-dried to give 247 mg of pure 12-8-2 (75%): ¹H NMR (400 MHz, CDCl₃) δ 13.95 (s, 1H), 12.15 (s, 1H), 7.64 (d, J=9.2 Hz, 1H), 7.43(d, J=7.2 Hz, 2H), 7.34-7.28 (m, 3H), 6.84 (d, J=8.8 Hz, 1H), 5.30 (s, 2H), 3.82 (d, J=10.4 Hz, 1H), 3.31-3.25 (m, 1H), 3.05-2.90 (m, 1H), 2.71-2.62 (m, 1H); 2.43 (s, 8H), 0.80 (s, 9H), 0.22 (s, 3H), 0.08 (s, 3H) MS (ESI) m/z 785.3 (M+H).
(4S,4aS,5aR,12aS)-4-(dimethylamino)-3,10,12,12a-tetrahydroxy-1,11-dioxo-7-(trifluoromethyl)-1,4,4a,5,5a,6,11,12a-octahydrotetracene-2-carboxamide (Compound 269). Aqueous HF (1 mL, 48%) was added to a CH₃CN solution (4 mL) of 12-8 (35 mg, 0.045 mmol) in a polypropylene tube at 25° C. The reaction was stirred at 25° C. for 18 h. The resulting mixture was poured into an aqueous solution of K₂HPO₄(5 g, dissolved in 30 mL water). The mixture was extracted with EtOAc. The combined EtOAc extracts were dried (Na₂SO₄) and concentrated to yield 35 mg of crude intermediate.
Palladium on carbon (10 mg, 10 wt %) was added to a HCl/MeOH solution (0.5N, 2 mL) of the above crude intermediate (35 mg). The reaction was purged with hydrogen and stirred under H₂(balloon) at 25° C. for 4 h. The reaction mixture was filtered through a small Celite plug. The filtrate was concentrated to yield the crude product. Preparative reverse phase HPLC purification on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-1 100A column [10 μm, 150×21.20 mm; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 4.0 mL (0.05 N HCl/water); gradient: 0→50% B over 7 min, 50→100% over 3 min, and 100% over 5 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 6.4-8.2 min, were collected and freeze-dried to yield 6 mg of Compound 269 (28% for 2 steps): ¹H NMR (400 MHz, CD₃OD) δ 7.76 (d, J=8.8 Hz, 1H), 6.95 (d, J=8.8 Hz, 1H), 4.10 (s, 1H), 3.25-2.93 (m, 3H), 3.04 (s, 3H), 2.95 (s, 3H), 2.60-2.48 (m, 1), 2.24-2.17 (m, 1H), 1.70-1.58 (m, 1H); MS (ESI) m/z 483.21 (M+H).
Alternatively, Compound 269 was prepared from 12-8-2. Aqueous HF (10 mL, 40%) was added to a THF solution (10 mL) of 12-8-2 (247 mg, 0.43 mmol) in a polypropylene tube at 25° C. The reaction was stirred at 25° C. overnight. The resulting mixture was poured into an aqueous solution of K₂HPO₄(20 g, dissolved in 100 mL water). The mixture was extracted with EtOAc. The combined EtOAc extracts were dried (Na₂SO₄) and concentrated to yield 250 mg of the crude intermediate.
Palladium on carbon (150 mg, 10 wt %) was added to a HCl/MeOH solution (0.5N, 6 mL) of the above crude intermediate (250 mg). The reaction was purged with hydrogen and stirred under H₂(balloon) at 25° C. for 1 h. The reaction mixture was filtered through a small Celite plug. The filtrate was concentrated to yield the crude product. Preparative reverse phase HPLC purification on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-1 100A column and freeze-dried to yield 105 mg of Compound 269 (51% for 2 steps).
(4S,4aS,5aR,12aS)-9-amino-4-(dimethylamino)-3,10,12,12a-tetrahydroxy-1,11-dioxo-7-(trifluoromethyl)-1,4,4a,5,5a,6,11,12a-octahydrotetracene-2-carboxamide (Compound 270). A mixture of HNO₃(1 μL, 69%) and H₂SO₄(0.2 mL) was added to a H₂SO₄solution (0.5 mL) of Compound 269 (6 mg, 0.012 mmol) at 0° C. The reaction was stirred at 0° C. for 30 min. The resulting mixture was added dropwise to vigorously stirred diethyl ether (20 mL). The suspension was filtered through a small Celite pad and washed several times with more diethyl ether. The Celite pad was then eluted with MeOH until the eluent became colorless. The yellow MeOH eluent was collected and concentrated under reduced pressure to afford the crude intermediate.
Palladium on carbon (2 mg, 10 wt %) was added to a MeOH solution (1 mL) of the above crude intermediate. The reaction was purged with hydrogen and stirred under H₂(balloon) at 25° C. for 2 h. The catalyst was filtered off with a small Celite pad.
The filtrate was concentrated to yield the crude product. Preparative reverse phase HPLC purification on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-1 100A column [10 μm, 150×21.20 mm; flow rate, 20 mL/min; Solvent A: 0.05 N HCl; Solvent B: CH₃CN; injection volume: 4.0 mL (0.05 N HCl/water); gradient: 0→50% B over 7 min, 50→400% over 3 min, and 100% over 5 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 10-12 min, were collected and freeze-dried to yield 3 mg of pure Compound 270 (49% for 2 steps): ¹H NMR (400 MHz, CD₃OD) δ 7.75 (s, 1H), 4.12 (s, 1H), 3.25-2.92 (m, 3H), 3.03 (s, 3H), 2.95 (s, 3H), 2.64-2.54 (m, 1H), 2.27-2.20 (m, 1H), 1.71-1.60 (m, 1H); MS (ESI) m/z 498.22 (M+H).
Compound 271. Anhydrous Na₂CO₃(16 mg, 0.15 mmol, 6.3 equiv) was added to an anhydrous DMPU/acetonitrile (150 μL/50 μL) solution of Compound 270 (11 mg, 0.024 mmol). Bromoacetyl bromide (2.5 μL, 0.029 mmol, 1.2 equiv) was added to the mixture. The reaction was stirred at 25° C. for 10 min. Pyrrolidine (19 μL, 0.24 mmol, 10 equiv) was added to the reaction mixture. The reaction was stirred at 25° C. for 2 h. The reaction mixture was concentrated and acidified with HCl (0.5 N in MeOH, 0.7 mL). The resulting mixture was added dropwise to vigorously stirred diethyl ether (10 mL). The suspension was filtered through a small Celite pad and washed several times with more diethyl ether. The Celite pad was then eluted with MeOH until the eluent became colorless. The yellow MeOH eluent was collected and concentrated under reduced pressure to afford the crude product. Preparative reverse phase HPLC purification on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-1 100A column [10 μm, 150×21.20 mm; flow rate, 20 mL/min; Solvent A: 0.05 N HCl; Solvent B: CH₃CN; injection volume: 2.0 mL (0.05 N HCl/water); gradient: 0→50% B over 30 min; mass-directed fraction collection]. Fractions with the desired MW were collected and freeze-dried to yield 2.0 mg of pure Compound 271: ¹H NMR (400 MHz, CD₃OD) δ 8.70 (s, 1H), 4.33 (s, 2H), 4.11 (s, 1H), 3.84-3.75 (m, 2H), 3.30-2.90 (m, 5H), 3.03 (s, 3H), 2.95 (s, 3H), 2.60-2.50 (m, 1H), 2.26-2.00 (m, 5H), 1.71-1.58 (m, 1H); MS (ESI) m/z 609.26 (M+H).
Compounds 271-304 were prepared similarly substituting the appropriate amine NHR³R³.
Compound 272. ¹H NMR (400 MHz, CD₃OD) δ 8.72 (s, 1H), 4.11 (s, 1H), 4.09 (s, 2H), 3.22-2.90 (m, 3H), 3.03 (s, 3H), 2.92 (s, 3H), 2.59-2.49 (m, 1H), 2.25-2.18 (m, 1H), 1.70-1.59 (m, 1H), 1.42 (s, 9H); MS (ESI) m/z 611.25 (M+H).
Compound 273. ¹H NMR (400 MHz, CD₃OD) δ 8.69 (s, 1H), 4.25 (s, 2H), 4.11 (s, 1H), 3.25-2.88 (m, 3H), 3.03 (s, 3H), 3.01 (s, 6H), 2.95 (s, 3H), 2.59-2.49 (m, 1H), 2.25-2.17 (m, 1H), 1.70-1.58 (m, 1H); MS (ESI) m/z 583.23 (M+H).
Compound 274. ¹H NMR (400 MHz, CD₃OD) δ 8.70 (s, 1H), 4.22 (s, 2H), 4.12 (s, 1H), 3.23-2.92 (m, 3H), 3.05 (s, 3H), 2.96 (s, 3H), 2.91-2.84 (m, 1H), 2.60-2.49 (m, 1H), 2.27-2.19 (m, 1H), 1.71-1.59 (m, 1H), 1.00-0.92 (m, 4H); MS (ESI) m/z 595.24 (M+H).
Compound 275. ¹H NMR (400 MHz, CD₃OD) δ 8.71 (s, 1H), 4.13 (s, 1H), 4.11 (s, 2H), 3.70-3.60 (m, 1H), 3.22-2.93 (m, 3H), 3.05 (s, 3H), 2.95 (s, 3H), 2.59-2.49 (m, 1H), 2.26-2.10 (m, 3H), 1.90-1.79 (m, 2H), 1.78-1.60 (m, 5H); MS (ESI) m/z 623.29 (M+H).
Compound 276. ¹H NMR (400 MHz, CD₃OD) δ 8.72 (s, 1H), 4.12 (s, 3H), 3.25-2.94 (m, 3H), 3.05 (s, 3H), 2.97 (s, 2H), 2.95 (s, 3H), 2.60-2.49 (m, 1H), 2.25-2.20 (m, 1H), 1.71-1.59 (m, 1H), 1.12 (s, 9H); MS (ESI) m/z 625.31 (M+H).
Compound 277. ¹H NMR (400 MHz, CD₃OD) δ 8.72 (s, 1H), 4.12 (s, 1H), 4.10 (s, 2H), 3.25-2.92 (m, 5H), 3.04 (s, 3H), 2.95 (s, 3H), 2.60-2.49 (m, 1H), 2.26-2.18 (m, 1H), 2.12-2.03 (m, 1H), 1.71-1.60 (m, 1H), 1.07 (d, J=6.7 Hz, 6H); MS (ESI) m/z 611.28 (M+H).
Compound 278. ¹H NMR (400 MHz, CD₃OD) δ 8.72 (s, 1H), 4.13 (s, 2H), 4.16 (s, 1H), 3.23-2.93 (m, 5H), 3.04 (s, 3H), 2.96 (s, 3H), 2.60-2.50 (m, 1H), 2.25-2.19 (m, 1H), 1.71-1.60 (m, 1H), 1.20-1.09 (m, 1H), 0.78-0.73 (m, 1H), 0.48-0.41 (m, 1H); MS (ESI) m/z 609.24 (M+H).
Compound 279. ¹H NMR (400 MHz, CD₃OD) δ 8.65 (s, 1H), 4.41-4.34 (m, 2H), 4.35 (s, 2H), 4.24-4.17 (m, 2H), 4.11 (s, 1H), 3.22-2.92 (m, 3H), 3.04 (s, 3H), 2.95 (s, 3H), 2.70-2.60 (m, 1H), 2.59-2.42 (m, 2H), 2.25-2.18 (m, 1H), 1.70-1.59 (m, 1H); MS (ESI) m/z 595.21 (M+H).
Compound 280. ¹H NMR (400 MHz, CD₃OD) δ 8.71 (s, 1H), 4.11 (s, 1H), 4.09 (s, 2H), 3.24-2.94 (m, 3H), 3.05 (s, 3H), 2.96 (s, 3H), 2.80 (s, 3H), 2.60-2.50 (m, 1H), 2.26-2.19 (m, 1H), 1.71-1.60 (m, 1H); MS (ESI) m/z 569.20 (M+H).
Compound 281. ¹H NMR (400 MHz, CD₃OD) δ 8.68 (s, 1H), 4.10 (s, 3H), 3.20-2.93 (m, 10H), 2.56-2.47 (m, 1H), 2.25-2.10 (m, 3H), 1.92-1.85 (m, 2H), 1.73-1.59 (m, 2H), 1.45-1.33 (m, 4H), 1.30-1.16 (m, 1H); MS (ESI) m/z 637.1 (M+H).
Compound 282. ¹H NMR (400 MHz, CD₃OD) δ 8.67 (s, 1H), 4.30 (d, J=16.4 Hz, 1H), 4.19 (d, J=15.6 Hz, 1H), 4.10 (s, 1H), 3.21-2.93 (m, 14H), 2.56-2.48 (m, 1H), 2.22-2.19 (m, 1H), 1.84-1.75 (m, 2H), 1.67-1.57 (m, 1H), 1.02 (t, J=7.2 Hz, 3H); MS (ESI) m/z 611.1 (M+H).
Compound 283. ¹H NMR (400 MHz, CD₃OD) δ 8.66 (d, J=8.4 Hz, 1H), 4.27 (d, J=18.8 Hz, 2H), 4.10 (s, 1H), 3.98-3.94 (m, 1H), 3.47-3.43 (m, 1H), 3.18-2.85 (m, 12H), 2.76-2.71 (m, 2H), 2.54-2.47 (m, 1H), 2.23-2.16 (m, 1H), 1.85-1.53 (m, 6H); MS (ESI) m/z 649.1 (M+H).
Compound 284. ¹H NMR (400 MHz, CD₃OD) δ 8.65 (s, 1H), 4.07 (s, 2H), 4.03 (s, 1H), 3.97-3.90 (m, 2H), 3.12-2.86 (m, 9H), 2.49-2.42 (m, 1H), 2.15-2.11 (m, 1H), 1.57-1.50 (m, 1H),; MS (ESI) m/z 637.1 (M+H).
Compound 285. ¹H NMR (400 MHz, CD₃OD) δ 8.72 (s, 1H), 5.50 (d, J=52.0 Hz, 1H), 4.44 (s, 2H), 4.14 (s, 1H), 4.04-3.95 (m, 2H), 3.54-3.47 (m, 2H), 3.23-2.97 (m, 9H), 2.60-2.23 (m, 4H), 1.71-1.62 (m, 1H); MS (ESI) m/z 627.0 (M+H).
Compound 286. ¹H NMR (400 MHz, CD₃OD) δ 8.70 (s, 1H), 4.11 (s, 1H), 4.09 (s, 2H), 3.51-3.44 (m, 1H), 3.19-2.94 (m, 9H), 2.56-2.49 (m, 1H), 2.24-2.19 (m, 1H), 1.68-1.58 (m, 1H), 1.38 (t, J=6.4 Hz, 6H); MS (ESI) m/z 597.2 (M+H).
Compound 287. ¹H NMR (400 MHz, CD₃OD) δ 8.69 (s, 1H), 4.10 (s, 1H), 4.07 (s, 2H), 3.21-2.94 (m, 11H), 2.56-2.50 (m, 1H), 2.25-2.19 (m, 1H), 1.85-1.60 (m, 7H), 1.37-1.22 (m, 3H), 1.12-1.03 (m, 2H); MS (ESI) m/z 651.3 (M+H).
Compound 288. ¹H NMR (400 MHz, CD₃OD) δ 8.71 (s, 1H), 4.32 (s, 2H), 4.14 (s, 1H), 4.10-3.87 (m, 4H), 3.65-3.58 (m, 2H), 3.43-3.36 (m, 2H), 3.23-2.97 (m, 9H), 2.60-2.52 (m, 1H), 2.27-2.23 (m, 1H), 1.70-1.64 (m, 1H); MS (ESI) m/z 625.3 (M+H).
Compound 289. ¹H NMR (400 MHz, CD₃OD) δ 8.72 (s, 1H), 4.14 (s, 1H), 4.13 (s, 2H), 3.19-2.90 (m, 11H), 2.56-2.45 (m, 1H), 2.23-2.15 (m, 2H), 1.92-1.85 (m, 2H), 1.70-1.65 (m, 5H), 1.31-1.22 (m, 2H); MS (ESI) m/z 637.2 (M+H).
Compound 290. ¹H NMR (400 MHz, CD₃OD) δ 8.67 (s, 1H), 5.45 (d, J=52.0 Hz, 1H), 4.40 (s, 2H), 4.09 (s, 1H), 4.00-3.90 (m, 1H), 3.45-3.37 (m, 1H), 3.20-2.92 (m, 11H), 2.53-2.33 (m, 3H), 2.23-2.15 (m, 1H), 1.65-1.55 (m, 1H); MS (ESI) m/z 627.2 (M+H).
Compound 291. ¹H NMR (400 MHz, CD₃OD) δ 8.58 (s, 1H), 5.37 (d, J=56.8 Hz, 1H), 4.36 (m, 4H), 4.02 (s, 1H), 3.17-2.73 (m, 11H), 2.48-2.41 (m, 1H), 2.15-2.11 (m, 1H), 1.60-1.50 (m, 1H); MS (ESI) m/z 613.1 (M+H).
Compound 292. ¹H NMR (400 MHz, CD₃OD) δ 8.68 (s, 1H), 4.15 (s, 1H), 4.11 (s, 2H), 3.21-2.98 (m, 11H), 2.56-2.48 (m, 1H), 2.26-2.19 (m, 1H), 1.82-1.73 (m, 2H), 1.68-1.49 (m, 1H), 1.02 (t, J=7.2 Hz, 3H); MS (ESI) m/z 597.2 (M+H).
Compound 293. ¹H NMR (400 MHz, CD₃OD) δ 8.61 (s, 1H), 4.03 (s, 1H), 3.90 (s, 2H), 3.80-3.72 (m, 1H), 3.15-2.87 (m, 9H), 2.48-2.40 (m, 1H), 2.37-2.11 (m, 5H), 1.90-1.81 (m, 2H), 1.62-1.52 (m, 1H); MS (ESI) m/z 609.2 (M+H).
Compound 294. ¹H NMR (400 MHz, CD₃OD) δ 8.65 (s, 1H), 4.10 (s, 3H), 3.57 (t, J=5.2 Hz, 2H), 3.48 (s, 3H), 3.30-3.25 (m, 2H), 3.18-2.92 (m, 9H), 2.55-2.45 (m, 1H), 2.23-2.15 (m, 1H), 1.65-1.55 (m, 1H); MS (ESI) m/z 613.2 (M+H).
Compound 295. ¹H NMR (400 MHz, CD₃OD) δ 8.16 (s, 1H), 4.33 (d, J=15.6 Hz, 1H), 4.21 (d, J=16.4 Hz, 1H), 4.11 (s, 1H), 3.24-2.93 (m, 14H), 2.58-2.49 (m, 1H), 2.28-2.20 (m, 1H), 1.70-1.58 (m, 1H), 1.40 (t, J=7.4 Hz, 3H); MS (ESI) m/z 597.0 (M+H).
Compound 296. ¹H NMR (400 MHz, CD₃OD) δ 8.57 (s, 1H), 4.19 (s, 2H), 4.05 (s, 1H), 3.35-3.23 (m, 4H), 3.13-2.82 (m, 9H), 2.48-2.39 (s, 1H), 2.28-2.11 (s, 1H), 1.60-1.51 (m, 1H), 1.29 (t, J=7.2 Hz, 6H); MS (ESI) m/z 611.1 (M+H).
Compound 297. ¹H NMR (400 MHz, CD₃OD) δ 8.67 (s, 1H), 4.21 (s, 2H), 4.12 (s, 1H), 3.64-3.61 (m, 2H), 3.19-2.91 (m, 11H), 2.56-2.46 (m, 1H), 2.25-2.17 (m, 1H), 1.97-1.79 (m, 5H), 1.69-1.50 (m, 2H); MS (ESI) m/z 623.2 (M+H).
Compound 298. ¹H NMR (400 MHz, CD₃OD) δ 8.72 (s, 1H), 7.42 (s, 4H), 5.10-5.00 (m, 2H), 4.73-4.62 (m, 2H), 4.57 (s, 2H), 4.13 (s, 1H), 3.21-2.90 (m, 9H), 2.56-1.95 (m, 1H), 2.25-2.20 (m, 1H), 1.68-1.58 (m, 1H); MS (ESI) m/z 657.1 (M+H).
Compound 299. ¹H NMR (400 MHz, CD₃OD) δ 8.68 (s, 1H), 4.12 (s, 1H), 4.09 (s, 2H), 3.22-2.91 (m, 11H), 2.56-2.47 (m, 1H), 2.26-2.17 (m, 1H), 1.69-1.58 (m, 1H), 1.37 (t, J=7.2 Hz, 3H); MS (ESI) m/z 583.1 (M+H).
Compound 300. ¹H NMR (400 MHz, CD₃OD) δ 8.70 (s, 1H), 6.36 (tt, J=53.5, 3.2 Hz, 1H), 4.23 (s, 2H), 4.13 (s, 1H), 3.69 (td, J=15.3, 2.8 Hz, 2H), 3.23-2.91 (m, 9H), 2.58-2.50 (m, 1H), 2.25-2.19 (m, 1H), 1.70-1.60 (m, 1H); MS (ESI) m/z 619.0 (M+H).
Compound 301. iH NMR (400 MHz, CD₃OD) δ 8.79 (s, 1H), 4.32 (s, 1H), 4.32 (s, 2H), 3.37-3.15 (m, 11H), 2.97-2.89 (m, 1H), 2.78-2.68 (m, 1H), 2.47-2.35 (m, 3H), 2.27-2.18 (m,1H), 2.16-2.03 (m, 3H), 1.90-1.79 (m,1H); MS (ESI) m/z 623.2 (M+H).
Compound 302. ¹H NMR (400 MHz, CD₃OD) δ 8.86 (s, 1H), 4.90-4.80 (m, 1H), 4.62-4.50 (m, 5H), 4.32 (s, 1H), 4.30-4.20 (m, 1H), 3.56(s, 3H), 3.40-3.12 (m, 9H), 2.80-2.68 (m, 1H), 2.48-2.39 (m, 1H), 1.90-1.79 (m,1H); MS (ESI) m/z 625.2 (M+H).
Compound 303. ¹H NMR (400 MHz, CD₃OD) δ 8.73 (s, 1H), 4.75 (tt, J=52.0, 4.8 Hz, 2H), 4.21 (s, 2H), 4.15 (s, 1H), 3.55 (tt, J=26.8, 4.4 Hz, 2H), 3.23-2.87 (m, 9H), 2.60-2.50 (m, 1H), 2.30-2.20 (m, 1H), 1.68-1.64 (m, 1H); MS (ESI) m/z 601.1 (M+H).
Compound 304. ¹H NMR (400 MHz, CD₃OD) δ 8.79 (s, 1H), 7.49-7.45 (m, 2H), 7.30-7.28 (m, 3H), 4.71 (s, 2H), 4.11 (s, 1H), 3.18-2.95 (m, 9H), 2.60-2.49 (m, 1H), 2.27-2.18 (m, 1H), 1.70-1.61 (m, 1H); MS (ESI) m/z 631.0 (M+H).
Compounds 307-311 were prepared similarly to 271 substituting bromoacetyl bromide and an amine with an acid chloride (appropriately protected if needed) or a carboxylic acid (appropriately protected if needed) and a coupling reagent such as HATU.
Compound 307. ¹H NMR (400 MHz, CD₃OD) δ 8.71 (s, 1H), 5.32-5.28 (m, 1H), 4.21-4.17 (m, 1H), 4.14 (s, 1H), 4.07-4.00(m, 1H), 3.25-2.92 (m, 10H), 2.70-2.61 (m, 1H), 2.59-2.49 (m, 1H), 2.28-2.20 (m, 1H), 1.70-1.60 (m,1H); MS (ESI) m/z 581.1 (M+H).
Compound 308. ¹H NMR (400 MHz, CD₃OD) δ 8.54 (s, 1H), 4.07 (s, 2H), 3.46-3.38 (m, 1H), 3.16-2.90 (m, 10H), 2.53-2.43 (m, 1H), 2.33-2.15 (m, 2H), 1.96-1.86 (m, 2H), 1.77-1.55 (m, 4H); MS (ESI) m/z 609.1 (M+H).
Compound 309. ¹H NMR (400 MHz, CD₃OD) δ 8.59 (s, 1H), 5.17-5.12 (m, 1H), 4.11-3.98 (m, 3H), 3.13-2.85 (m, 12H), 2.59-2.42 (m, 3H), 2.18-2.11 (m, 1H), 1.61-1.50 (m,1H); MS (ESI) m/z 595.1 (M+H).
Compound 310. ⁱH NMR (400 MHz, CD₃OD) δ 8.59 (s, 1H), 4.62-4.57 (m, 1H), 4.12 (s, 1H), 3.51-3.36 (m, 2H), 3.25-2.93 (m, 3H), 3.05 (s, 3H), 2.96 (s, 3H), 2.62-2.49 (m, 2H), 2.25-2.08 (m, 4H), 1.71-1.58 (m, 1H); MS (ESI) m/z 595.25 (M+H).
Compound 311. ⁱH NMR (400 MHz, CD₃OD) δ 8.61 (s, 1H), 4.42-4.37 (m, 1H), 4.13 (s, 1H), 3.82-3.75 (m, 2H), 3.23-2.92 (m, 3H), 3.04 (s, 3H), 3.01 (s, 3H), 2.95 (s, 3H), 2.78-2.62 (m, 1H), 2.62-2.51 (m, 1H), 2.32-2.04 (m, 4H), 1.71-1.60 (m, 1H); MS (ESI) m/z 609.26 (M+H).
Compound 305. To a solution of Compound 270 (15 mg, 0.024 mmol, 1 equiv) in THF(1 ml) was added sodium carbonate (20 mg, 0.19 mmol, 8 equiv), 3-fluorobenzenesulfonyl chloride (0.036 mmol, 1.5 equiv). The reaction was stirred at rt for 6 h, LC/MS analysis indicated complete consumption of the starting aniline 12. The reaction mixture was then added dropwise into 4 N HCl/MeOH (1 ml) at 0° C. with rapid stirring. The reaction mixture was concentrated and the residue purified by HPLC. The desired product Compound 305 was obtained as a yellow solid after freeze-drying: ¹H NMR (400 MHz, CD₃OD) δ 7.92 (s, 1H), 7.61-7.50 (m, 3H), 7.38-7.32 (m, 1H), 4.10 (s, 1H), 3.19-2.90 (m, 9H), 2.55-2.45 (m, 1H), 2.24-2.46 (m, 1H), 1.68-1.55 (m,1H); MS (ESI) m/z 656.0 (M+H).
Compound 306. Compound 306 was prepared similarly to Compound 305 using 1-methyl-1H-pyrazole-3-sulfonyl chloride: ¹H NMR (400 MHz, CD₃OD) δ 8.82 (s, 1H), 8.06 (s, 1H), 7.93 (s, 1H), 4.15 (s, 1H), 3.91 (s, 3H), 3.96-2.95 (m, 9H), 2.59-2.49 (m, 1H), 2.28-2.20 (m, 1H), 1.70-1.60 (m,1H); MS (ESI) m/z 642.1 (M+H).

Example 13

Synthesis of Compounds of Formula V

In Scheme 13, “R^F” represents benzyl or BOC; and “R^F” represents benzyl or hydrogen.
Ethyl 3-bromo-6-methoxy-2-methylbenzoate (13-2). To a methylene chloride solution (100 mL) of Ethyl 2-methoxy-6-methylbenzoate (13-1, 5 g, 25.8 mmol, TCI M1120) was added bromine (1.65 mL, 32.2 mmol, 1.25 equiv) at 0° C. The reaction was stirred at 0° C. to 25° C. for 12 h and quenched with sodium thiosulfate solution (5%, 20 mL) and stirred for 20 min. The resulting mixture was extracted with methylene chloride. The combined methylene chloride extracts were dried (Na₂SO₄) and concentrated to give 7.2 g of 13-2: ¹H NMR (400 MHz, CDCl₃) δ 7.47 (d, J=9.2 Hz, 1H), 6.63 (d, J=9.2 Hz, 1H), 4.38 (q, J=7.3 Hz, 2H), 3.78 (s, 3H), 2.30 (s, 3H), 1.35 (t, J=7.3 Hz, 3H).
Ethyl 3-bromo-6-hydroxy-2-methylbenzoate (13-3). BBr3 (31 mL, 1.0 M, 30.96 mmol, 1.2 equiv) was added to a methylene chloride solution (100 mL) of crude 13-2 (7.2 g) at −78° C. The reaction was allowed to warm to 25° C. over 2 h. The reaction was stirred from −78° C. to 25° C. for 2 h, quenched with saturated NaHCO3 and concentrated. EtOAc and H₂O were added to the reaction mixture. The aqueous layer was extracted with EtOAc. The combined EtOAc extracts were dried (Na₂SO₄) and concentrated to yield 7.1 g of 13-3: ¹H NMR (400 MHz, CDCl₃) δ 10.87 (br s, 1H), 7.55 (d, J=9.2 Hz, 1H), 4.43 (q, J=7.3 Hz, 2H), 2.63 (s, 3H), 1.42 (t, J=7.3 Hz, 3H).
Ethyl 6-(benzyloxy)-3-bromo-2-methylbenzoate (13-4). To a DMF solution (50 mL) of crude 13-3 (7.1 g) was added NaH (1.24 g, 60% in oil, 30.96 mmol, 1.2 equiv) at 0° C. The reaction was stirred at 0° C. for 1 h. To the reaction mixture was added BnBr (4.3 mL, 36.1 mmol, 1.4 equiv) at 0° C. The reaction was stirred at 25° C. for 12 h. The reaction was quenched with NH₄Cl and extracted with EtOAc. The combined EtOAc extracts were washed with H₂O, brine, dried (Na₂SO₄) and concentrated. Flash chromatography on silica gel (30:1 hexanes/EtOAc) yielded 8.0 g of compound 13-4 (89% for 3 steps): ¹H NMR (400 MHz, CDCl₃) δ 7.44 (d, J=9.2 Hz, 1H), 7.25-7.40 (m, 5H), 6.66 (d, J=9.2 Hz, 1H), 5.06 (s, 2H), 4.36 (q, J=7.3 Hz, 2H), 2.32 (s, 3H), 1.32 (t, J=7.3 Hz, 3H).
Ethyl 6-(benzyloxy)-3-cyano-2-methylbenzoate (13-5). CuCN (770 mg, 8.6 mmol, 3 equiv) was added to a DMF solution (15 mL, anhydrous) of 13-4 (1.0 g, 2.87 mmol) in a sealed tube. The reaction was stirred at 200° C. for 18 min and cooled. The resulting mixture was quenched with H₂O and extracted with EtOAc. The combined EtOAc extracts were washed with H₂O, brine, dried (Na₂SO₄) and concentrated. Flash chromatography on silica gel (10:1 hexanes/EtOAc) yielded 670 mg of compound 13-5 (80%):¹H NMR (400 MHz, CDCl₃) δ 7.55 (d, J=8.5 Hz, 1H), 7.26-7.40 (m, 5H), 6.83 (d, J=8.5 Hz, 1H), 5.14 (s, 2H), 4.37 (q, J=7.0 Hz, 2H), 2.46 (s, 3H), 1.30 (t, J=7.0 Hz, 3H).
6-(benzyloxy)-3-cyano-2-methylbenzoic acid (13-6). NaOH solution (5 mL, 3 N) was added to a MeOH/THF solution (5 mL/5 mL) of 13-5 (518 mg, 1.75 mmol) at 55° C. The reaction was stirred from 55° C. for 15 h and concentrated. The resulting mixture was acidified with HCl (6 N) to pH 1 and extracted with EtOAc. The combined EtOAc extracts were dried (Na₂SO₄) and concentrated to yield 530 mg of crude 13-6.
6-(benzyloxy)-3-cyano-2-methylbenzoic acid (13-7-1). Oxalyl chloride (0.75 mL, 8.75 mmol, 5 equiv) was added to a CH₂Cl₂solution (5 mL, anhydrous) of crude 13-6 (530 mg). DMF (0.1 mL) was added to the resulting mixture. The reaction was stirred at 25° C. for 1 h and concentrated. The resulting solid was re-dissolved in 5 mL of anhydrous CH₂Cl₂. Phenol (330 mg, 3.5 mmol, 2 equiv), DMAP (213 mg, 1.75 mmol, 1 equiv), and triethylamine (1.2 mL, 8.75 mmol, 5 equiv) were added to the reaction mixture. The reaction was stirred at 25° C. for 12 h and concentrated. EtOAc and H₂O were added to the residue. The organic layer was washed with NaOH (1 N), H₂O, and brine, dried (Na₂SO₄), and concentrated. Flash chromatography on silica gel (10:1 hexanes/EtOAc) yielded 400 mg of compound 13-7-1 (67% for 2 steps): ¹H NMR (400 MHz, CDCl₃) δ 7.65 (d, J=9.2 Hz, 1H), 7.25-7.45 (m, 8H), 7.06 (d, J=10.2 Hz, 2H), 6.93 (d, J=9.2 Hz, 1H), 5.20 (s, 2H), 2.61 (s, 3H).
Phenyl 6-(tert-butoxycarbonyloxy)-3-cyano-2-methylbenzoate (13-7-2). To a solution of compound 13-7-1 (5 g, 0.014 mol) in 1, 4 dioxane/MeOH (25 mL/25 mL) was added Pd/C (1.1 g, 22%), the mixture was purged by bubbling hydrogen through for 5 min and rapidly stirred under 1 atm hydrogen atmosphere at rt for 2 hrs. The catalyst was filtered off with a small Celite pad and washed with more methanol (2 mL×3). The filtrate was concentrated to yield the crude intermediate. Di-tert-butyl dicarbonate (3.3 g, 0.015 mmol, 1.05 equiv), DMAP (20 mg, cat.) were added to a solution of the above intermediate in DCM (100 mL). The resulting mixture was stirred for 1 h at rt and concentrated. The residue was purified by flash-column chromatography to afford the desired product 13-7-2 as a white solid (3.2 g, 62%, two steps): ¹H NMR (400 MHz, CDCl₃) δ 7.77 (d, J=8.8 Hz, 1H), 7.47 (m, 2H), 7.33 (m, 2H), 7.30 (m, 1H), 7.25 (d, J=7.6 Hz, 1H), 2.71 (s, 3H), 1.47 (s, 9H); MS (ESI) m/z 354.37 (M+H).
(4aS,11aR,12aS,13S)-3,7-bis(benzyloxy)-4a-(tert-butyldimethylsilyloxy)-13-(dimethylamino)-5-hydroxy-4,6-dioxo-4,4a,6,11,11a,12,12a,13-octahydrotetraceno[2,3-d]isoxazole-10-carbonitrile (13-8-1). A THF solution (5 mL) of 13-7-1 (400 mg, 1.17 mmol, 1.5 equiv) and enone 1-6 (378 mg, 0.78 mmol) was added TMEDA (1.1 mL, 7.02 mmol, 6.0 equiv) at −78° C. LHMDS (4.7 mL, 1 M, 4.66 mmol, 4.0 equiv) was added to the reaction at −78° C. The reaction was stirred at −78° C. for 30 min and allowed to warm to 25° C. over 1 h, quenched with saturated NH₄Cl, and extracted with EtOAc. The combined EtOAc extracts were dried (Na₂SO₄) and concentrated to yield the crude product.
Preparative reverse phase HPLC purification on a Waters Autopurification system using a Sunfire Prep C18 OBD column [5 μm, 19×50 mm; flow rate, 20 mL/min; Solvent A: H₂O with 0.1% HCO₂H; Solvent B: CH₃CN with 0.1% HCO₂H; injection volume: 4.0 mL (CH3CN); gradient: 80→100% B over 15 min; mass-directed fraction collection]. Fractions with the desired MW, eluting at 5.9-7.0 min, were collected and concentrated on a RotaVap at 25° C. to remove most of the acetonitrile. The resulting mostly aqueous solution was extracted with EtOAc. The combined EtOAc extracts were dried (Na₂SO₄) and concentrated to give 153 mg of pure 13-8-1 (27%).
(4aS,11aR,12aS,13S)-3-(benzyloxy)-4a-(tert-butyldimethylsilyloxy)-10-cyano-13-(dimethylamino)-5-hydroxy-4,6-dioxo-4,4a,6,11,11a,12,12a,13-octahydrotetraceno[2,3-dfisoxazol-7-yltert-butyl carbonate (13-8-2). To a solution of compound 13-7-2 (402 mg, 1.139 mmol, 2 equiv) and enone 1-6 (282 mg, 0.58 mmol, 1 equiv) was added TMEDA (0.55 mL, 3.5 mmol, 6 equiv) at −78° C. LHMDS (3.3 mL, 1 M, 3.3 mmol, 5.6 equiv) was added to the reaction mixture at −78° C. The reaction was stirred at −78° C. for 30 min and allowed to warm to 25° C. over 1 h, quenched with saturated NH₄Cl, and extracted with EtOAc. The combined extracts were dried with Na₂SO₄and concentrated to yield the crude product, which was purified by flash-column chromatography to afford the product 13-8-2 as a yellow solid (0.14 g, 32%): ¹H NMR (400 MHz, CDCl₃) δ 15.41 (s, 1H), 7.85 (d, J=4.0 Hz, 1H), 7.63-7.32 (m, 5H), 7.26-7.20 (m, 1H), 5.44 (s, 2H), 4.01 (d, J=10.8 Hz,1H), 3.48 (dd, J=16.0 Hz, 4.4 Hz, 1H), 3.21-3.18 (m, 1H), 2.94-2.81 (m, 1H), 2.69-2.63 (m, 1H), 2.71-2.55 (m, 7H), 2.26 (d, J=14.4 Hz, 1H),1.62 (s, 9H), 0.93 (s, 9H), 0.33 (s, 3H), 0.19 (s, 3H); MS (ESI) m/z 742.37 (M+H).
Compound 312. Aqueous HF (1 mL, 48%) was added to a CH₃CN solution (4 mL) of 13-8-1 (35 mg, 0.045 mmol) in a polypropylene tube at 25° C. The reaction was stirred at 25° C. for 18 h. The resulting mixture was poured into an aqueous solution of K₂HPO₄(5 g, dissolved in 30 mL water). The mixture was extracted with EtOAc. The combined EtOAc extracts were dried (Na₂SO₄) and concentrated to yield 120 mg of the crude intermediate.
Palladium on carbon (50 mg, 10 wt %) was added to a HCl/MeOH solution (0.5N, 2 mL) of the above intermediate (120 mg). The reaction was purged with hydrogen and stirred under H₂(balloon) at 25° C. for 3 h. The reaction mixture was filtered through a small Celite plug. The filtrate was concentrated. Preparative reverse phase HPLC purification on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-1 100A column [10 μm, 150×21.20 mm; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 4.0 mL (0.05 N HCl/water); gradient: 0→70% B over 7 min, 70→100% over 3 min, and 100% over 5 min; mass-directed fraction collection]. Fractions with the desired MW were collected and freeze-dried to yield 28 mg of Compound 312 (30% for 2 steps): ¹H NMR (400 MHz, CD₃OD) δ 7.76 (d, J=9.0 Hz, 1H), 6.97 (d, J=9.0 Hz, 1H), 4.10 (s, 1H), 3.26-2.91 (m, 3), 3.04 (s, 3H), 2.96 (s, 3H), 2.71-2.62 (m, 1H), 2.27-2.20 (m, 1H), 1.72-1.62 (m, 1H); MS (ESI) m/z 410.22 (M+H).
Alternatively, Compound 312 was prepared from 13-8-2. Compound 13-8-2 (140 mg, 0.19 mmol) was dissolved in THF (5 mL), and HF (5 mL, 40% in water) was added. The resultant yellow solution was stirred at rt overnight. The reaction solution was then slowly added into a solution of K₂HPO₄(3.1 g) in water (20 mL) with rapid stirring. The mixture was extracted with DCM (10 mL×3). The combine extracts were dried over sodium sulfate and concentrated in vacuo to yield the crude intermediate.
To a HCl/MeOH solution (0.5 N, 5 mL) of the above crude intermediate was added Pd/C (30 mg, 20%). The mixture was purged by bubbling hydrogen through for 5 min and rapidly stirred under 1 atm hydrogen atmosphere at rt for 1 hr. The catalyst was filtered off with a small Celite pad and washed with more methanol (5 mL×3). The filtrate was concentrated in vacuo. Preparative HPLC purification on a Polymerx™ column yielded the desired product Compound 312 as a yellow solid (56 mg, 68% two steps).
Compound 313. A mixture of HNO₃(27 μL, 69%) and H₂SO₄(0.4 mL) was added to a H₂SO₄solution (1 mL) of Compound 312 (150 mg, 0.34 mmol) at 0° C. The reaction was stirred at 0° C. for 30 min. The resulting mixture was added dropwise to vigorously stirred diethyl ether (20 mL). The suspension was filtered through a small Celite pad and washed several times with more diethyl ether. The Celite pad was then eluted with MeOH until the eluent became colorless. The yellow MeOH eluent was collected and concentrated under reduced pressure.
The resulting mixture was re-dissolved in MeOH (15 mL). The Palladium on carbon (20 mg, 10 wt %) was added to the reaction. The reaction mixture was stirred under H₂at 25° C. for 30 min. The reaction mixture was filtered through a small Celite plug. The filtrate was concentrated. Preparative reverse phase HPLC purification on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-1 100A column [10 μm, 150×21.20 mm; flow rate, 20 mL/min; Solvent A: 0.05 N HCl/water; Solvent B: CH₃CN; injection volume: 4.0 mL (0.05 N HCl/water); gradient: 0→50% B over 7 min, 50→100% over 3 min, and 100% over 5 min; mass-directed fraction collection]. Fractions with the desired MW were collected and freeze-dried to yield 62 mg of Compound 313 (40% for 2 steps): ¹H NMR (400 MHz, CD₃OD) δ 7.58 (s, 1H), 4.10 (s, 1H), 3.25-2.93 (m, 3H), 3.03 (s, 3H), 2.93 (s, 3H), 2.75-2.60 (m, 1H), 2.28-2.20 (m, 1H), 1.71-1.60 (m, 1H); MS (ESI) m/z 455.23 (M+H).
Compound 314. Anhydrous Na₂CO₃(16 mg, 0.15 mmol, 6.3 equiv) was added to an anhydrous DMPU/acetonitrile (150 μL/50 μL) solution of Compound 313 (11 mg, 0.024 mmol). Bromoacetyl bromide (2.5 μL, 0.029 mmol, 1.2 equiv) was added to the mixture. The reaction was stirred at 25° C. for 10 min. Pyrrolidine (19 μL, 0.24 mmol, 10 equiv) was added to the reaction mixture. The reaction was stirred at 25° C. for 2 h. The reaction mixture was concentrated and acidified with HCl (0.5 N in MeOH, 0.7 mL). The resulting mixture was added dropwise to vigorously stirred diethyl ether (10 mL). The suspension was filtered through a small Celite pad and washed several times with more diethyl ether. The Celite pad was then eluted with MeOH until the eluent became colorless. The yellow MeOH eluent was collected and concentrated under reduced pressure. Preparative reverse phase HPLC purification on a Waters Autopurification system using a Phenomenex Polymerx™ 10μ RP-1 100A column [10 μm, 150×21.20 mm; flow rate, 20 mL/min; Solvent A: 0.05 N HCl; Solvent B: CH₃CN; injection volume: 2.0 mL (0.05 N HCl/water); gradient: 0→50% B over 30 min; mass-directed fraction collection]. Fractions with the desired MW were collected and freeze-dried to yield 4.3 mg of pure 13-11-1: ¹H NMR (400 MHz, CD₃OD) δ 8.62 (s, 1H), 4.34 (s, 1H), 4.12 (s, 1H), 3.3.84-3.76 (m, 2H), 3.30-2.92 (m, 5H), 3.04 (s, 3H), 2.95 (s, 3H), 2.70-2.58 (m, 1H), 2.30-2.01 (m, 5H), 1.72-1.61 (m, 1H); MS (ESI) m/z 566.27 (M+H).
Compounds 315-333 were prepared similarly employing the appropriate amine (NHR²R³).
Compound 315. ¹H NMR (400 MHz, CD₃OD) δ 8.64 (s, 1H), 4.12 (s,1H), 4.09 (s, 2H), 3.30-2.92 (m, 3H), 3.05 (s, 3H), 2.95 (s, 3H), 2.71-2.58 (m, 1H), 2.30-2.22 (m, 1H), 1.73-1.62 (m, 1H), 1.42 (s, 9H); MS (ESI) m/z 568.19 (M+H).
Compound 316. ¹H NMR (400 MHz, CD₃OD) δ 8.63 (s, 1H), 4.26 (s, 1H), 4.13 (s, 1H), 3.30-2.94 (m, 3H), 3.05 (s, 3H), 3.02 (s, 6H), 2.95 (s, 3H), 2.71-2.60 (m, 1H), 2.30-2.23 (m, 1H), 1.73-1.62 (m, 1H); MS (ESI) m/z 540.24 (M+H).
Compound 317. ¹H NMR (400 MHz, CD₃OD) δ 8.65 (s, 1H), 4.12 (s, 1H), 4.10 (s, 2H), 3.20-2.92 (m, 5H), 3.04 (s, 3H), 2.95 (s, 3H), 2.71-2.62 (m, 1H), 2.30-2.22 (m, 1H), 2.13-2.24 (m, 1H), 1.73-1.63 (m, 1H), 1.08 (d, J=6.7 Hz, 6H); MS (ESI) m/z 568.21 (M+H).
Compound 318. ¹H NMR (400 MHz, CD₃OD) δ 8.53 (s, 1H), 4.11 (s, 2H), 4.04 (s, 1H), 3.20-2.75 (m, 10H), 2.58-2.52 (m, 1H), 2.19-2.15 (m, 1H),1.62-1.56 (m, 1H), 0.86-0.80 (m, 4H); MS (ESI) m/z 552.1 (M+H).
Compound 319. ¹H NMR (400 MHz, CD₃OD) δ 8.53 (s, 1H), 4.05 (s, 1H), 3.90 (s, 2H), 3.20-2.85 (m, 11H), 2.62-2.48 (m, 1H), 2.19-2.15 (m, 1H), 1.58-1.53 (m, 1H), 1.27 (t, J=7.2 Hz, 3H); MS (ESI) m/z 540.0 (M+H).
Compound 320. ¹H NMR (400 MHz, CD₃OD) δ 8.64 (s, 1H), 4.15 (s, 1H), 4.11 (s, 2H), 3.30-2.96 (m, 11H), 2.72-2.60 (m, 1H), 2.31-2.28 (m, 1H), 1.88-1.62 (m, 3H), 1.06 (t, J=7.2 Hz, 3H); MS (ESI) m/z 553.9 (M+H).
Compound 321. ¹H NMR (400 MHz, CD₃OD) δ 8.56 (s, 1H), 4.04 (s, 1H), 4.00 (s, 2H), 3.15-2.85 (m, 11H), 2.62-2.55 (m, 1H), 2.21-2.16 (m, 1H), 1.80-1.50 (m, 8H), 1.30-1.10 (m, 4H); MS (ESI) m/z 608.0 (M+H).
Compound 322. ¹H NMR (400 MHz, CD₃OD) δ 8.54 (s, 1H), 4.02 (s, 2H), 3.89 (s, 1H), 3.80-3.70 (m, 1H), 3.18-2.85 (m, 9H), 2.60-2.50 (m, 1H), 2.32-2.10 (m, 5H), 1.90-1.80 (m, 2H), 1.67-1.52 (m, 1H); MS (ESI) m/z 566.1 (M+H).
Compound 323. ¹H NMR (400 MHz, CD₃OD) δ 8.55 (s, 1H), 4.04 (s, 1H), 4.02 (s, 2H), 3.60-3.50 (m, 1H), 3.18-2.78 (m, 9H), 2.60-2.50 (m, 1H), 2.21-2.14 (m, 1H), 2.07 (br s, 2H), 1.76 (br s, 2H), 1.61 (br s, 5H); MS (ESI) m/z 580.1 (M+H).
Compound 324. ¹H NMR (400 MHz, CD₃OD) δ 8.63 (s, 1H), 4.12 (s, 1H), 4.10 (s, 2H), 3.25-2.93 (m, 10H), 2.69-2.59 (m, 1H), 2.28-2.20 (m, 1H), 2.15-2.12 (m, 2H), 1.96-1.85 (m, 2H), 1.75-1.65 (m, 2H), 1.45-1.31 (m, 5H); MS (ESI) m/z 594.1 (M+H).
Compound 325. ¹H NMR (400 MHz, CD₃OD) δ 8.62 (s, 1H), 4.29 (d, J=16.0 Hz, 1H), 4.18 (d, J=16.0 Hz, 1H), 4.12 (s, 1H), 3.28-2.92 (m, 14H), 2.70-2.58 (m, 1H), 2.28-2.20 (m, 1H), 1.72-1.53 (m, 1H), 1.38 (t, J=7.2 Hz, 3H); MS (ESI) m/z 554.0 (M+H).
Compound 326. ¹H NMR (400 MHz, CD₃OD) δ 8.60 (s, 1H), 4.24 (s, 2H), 4.11 (s, 1H), 3.38-3.28 (m, 4H), 3.25-2.98 (m, 9H), 2.68-2.58 (m, 1H), 2.28-2.20 (m, 1H), 1.71-1.62 (m, 1H), 1.36 (t, J=7.2 Hz, 6H); MS (ESI) m/z 568.0 (M+H).
Compound 327. ¹H NMR (400 MHz, CD₃OD) δ 8.62 (s, 1H), 4.33 (d, J=16.0 Hz, 1H), 4.21 (d, J=16.0 Hz, 1H), 4.14 (s, 1H), 3.30-2.88 (m, 14H), 2.70-2.60 (m, 1H), 2.30-2.22 (m, 1H), 1.90-1.77 (m, 2H), 1.75-1.60 (m, 1H), 1.04 (t, J=7.6 Hz, 3 H); MS (ESI) m/z 568.0 (M+H).
Compound 328. ¹H NMR (400 MHz, CD₃OD) δ 8.51 (s, 1H), 4.30 (br s, 4H), 4.15 (dd, J=9.6, 18.8 Hz, 2H), 4.08 (s, 1H), 3.30-2.88 (m, 9H), 2.64-2.50 (m, 2H), 2.42 (br s, 1H), 2.24-2.15 (m, 1H), 1.70-1.50 (m, 1H); MS (ESI) m/z 552.0 (M+H).
Compound 329. ¹H NMR (400 MHz, CD₃OD) δ 8.57 (s, 1H), 4.07 (s, 1H), 4.04 (s, 2H), 3.46-3.41 (m, 1H), 3.23-2.82 (m, 9H), 2.62-2.55 (m, 1H), 2.25-2.20 (m, 1H), 1.65-1.52 (m, 1H), 1.35 (d, J=6.4 Hz, 6H); MS (ESI) m/z 554.0 (M+H).
Compound 330. ¹H NMR (400 MHz, CD₃OD) δ 8.54 (s, 1H), 5.50-5.38 (m, 1H), 4.35 (br s, 2H), 4.04 (s, 1H), 4.00-3.71 (m, 2H), 3.50-3.28 (m, 2H), 3.29-2.82 (m, 9H), 2.60-2.24 (m, 4H), 1.66-1.50 (m, 1H); MS (ESI) m/z 584.0 (M+H).

Example 14

Antibacterial Activity

The antibacterial activities for the compounds of the invention were studied according to the following protocols.

Minimum Inhibitory Concentration (MIC) Assay

MICs were determined according to the Clinical and Laboratory Standards
Institute (CLSI) guidances (e.g., CLSI. Performance standards for antimicrobial susceptibility testing; nineteenth information supplement. CLSI document M100-S19, CLSI, 940 West Valley Road, Suite 1400, Wayne, Pa. 19087-1898, USA, 2009). Briefly, frozen bacterial strains were thawed and subcultured onto Mueller Hinton Broth (MHB) or other appropriate media (Streptococcus requires blood and Haemophilus requires hemin and NAD). Following incubation overnight, the strains were subcultured onto Mueller Hinton Agar and again incubated overnight. Colonies were observed for appropriate colony morphology and lack of contamination. Isolated colonies were selected to prepare a starting inoculum equivalent to a 0.5 McFarland standard. The starting inoculum was diluted 1:125 using MHB for further use. Test compounds were prepared by dilution in sterile water to a final concentration of 5.128 mg/mL. Antibiotics (stored frozen, thawed and used within 3 hours of thawing) and compounds were further diluted to the desired working concentrations.
The assays were run as follows. Fifty μL of MHB was added to wells 2-12 of a 96-well plate. One hundred μL of appropriately diluted antibiotics was added to well 1. Fifty μL of antibiotics was removed from well 1 and added to well 2 and the contents of well 2 mixed by pipetting up and down five times. Fifty μL of the mixture in well 2 was removed and added to well 3 and mixed as above. Serial dilutions were continued in the same manner through well 12. Fifty μL was removed from well 12 so that all contained 50 μL. Fifty μL of the working inoculum was then added to all test wells. A growth control well was prepared by adding 50 μL of working inoculum and 50 μL of MHB to an empty well. The plates were then incubated at 37° C. overnight, removed from the incubator and each well was read on a plate reading mirror. The lowest concentration (MIC) of test compound that inhibited the growth of the bacteria was recorded.

Example


	1	2	3	4	5	6	7	8	9	10	11	12

[Abt]	32	16	8	4	2	1	0.5	0.25	0.125	0.06	0.03	0.015
grow	−	−	−	−	−	+	+	+	+	+	+	+

[abt] = antibiotic concentration in the well
Grow = bacterial growth (cloudiness)

Interpretation: MIC=2 μg/mL

Protocol for Determining Inoculum Concentration (Viable Count)

Ninety μl of sterile 0.9% NaCl was pipetted into wells 2-6 of a 96-well microtiter plate. Fifty 50 μl of the inoculum was pipetted into well 1. Ten μL from was removed from well 1 and added it to well 2 followed by mixing. Ten μL was removed from well two and mixed with the contents of well 3 and so on creating serial dilutions through well 6. Ten μL was removed from each well and spotted onto an appropriate agar plate. The plate was placed into an incubator overnight. The colonies in spots that contain distinct colonies were counted. Viable count was calculated by multiplying the number of colonies by the dilution factor.


	Spot from Well

	1	2	3	4	5	6

Dilution	10²	10³	10⁴	10⁵	10⁶	10⁷
Factor

Bacterial Strains

Fifteen bacterial strains, listed below, were examined in minimum inhibitory concentration (MIC) assays.


ID	Organism	Source	Resistance	Comments	Gram Rx

SA100	S. aureus	ATCC 13709	MSSA	Smith strain	positive
SA101	S. aureus	ATCC 29213	MSSA	control	positive
SA158	S. aureus	MR, SK75	tetK (efflux)		positive
SA161	S. aureus	Micromyx, LLC	tet(M) ribosomal		positive
			protection
EF103	E. faecalis	ATCC 29212	tet-I/R	control	positive
EF159	E. faecalis	MR, DS160	tet(M) (rib	cip-R, ery-I	positive
			protect)
SP106	S. pneumoniae	ATCC 49619	wt	control	positive
SP160	S. pneumoniae	MR, 54	tet(M) (rib	pen-R, ery-R	positive
			protect)
EC107	E. coli	ATCC 25922	wt	control	negative
EC155	E. coli	MR, 10	tet(A) (efflux)		negative
KP109	K. pneumoniae	ATCC 13883	wt		negative
KP153	K. pneumoniae	MR, 1	tet(A) (efflux)	cip-R, gen-R	negative
EC108	E. cloacae	ATCC 13047	wt		negative
AB110	A. baumanii	ATCC 19606	wt		negative
PA111	P. aeruginosa	ATCC 27853	wt	control	negative

MSSA = methicillin susceptible S. aureus
wt = wild type
ATCC = American Type Culture Collection
MR = Marilyn Roberts, University of Washington
tet = tetracycline
tet-I/R = tetracycline intermediate/resistant mechanism no specified
cip = ciprofloxacin
R = resistant
gen = gentamicin
ery = erythromycin
pen = penicillin

Results

Values of minimum inhibition concentration (MIC) for the compounds of the invention are provided in Table 5.Table 5. MIC Values for Compounds of the Invention Compared to Sancycline, Minocycline and Tigecycline. A=lower than or equal to lowest MIC among three control compounds; B=greater than lowest MIC among three control compounds, but lower than highest MIC among three control compounds; C=greater than MIC of all three control compounds.


			SA161
	SA101	SA100	MRSA,	SA158	EF103	EF159	SP106	SP160	EC107	EC155	AB110	PA111	EC108	KP109	KP153
Cmpd	29213	13709	tetM	tetK	29212	tetM	49619	tetM	25922	tetA	19606	27853	13047	13883	tetA

100	B	B	B	B	B	B	B	C	B	B	B	C	B	B	B
101	B	B	A	B	B	B	A	B	B	B	C	B	B	B	B
102	B	B	B	B	B	B	B	A	B	B	C	A	B	B	B
103	B	B	B	B	B	B	A	A	B	B	B	C	B	B	B
104	B	B	B	B	B	B	A	A	B	B	B	C	B	B	B
105	B	B	B	B	B	B	A	A	B	B	B	B	B	B	B
106	A	B	B	B	A	B	A	A	B	B	B	B	B	B	B
107	B	B	B	B	B	B	A	A	B	B	C	B	B	B	B
108	B	B	C	B	B	B	B	B	B	B	C	C	B	B	B
109	B	B	B	B	B	B	A	A	B	B	C	C	B	B	B
110	C	C	C	C	B	C	C	C	C	C	C	C	C	C	C
111	C	C	B	B	B	B	C	B	C	C	C	C	C	C	C
112	B	B	B	B	B	B	A	A	B	B	C	C	B	B	B
113	C	C	B	B	B	B	C	B	C	C	C	C	C	C	C
114	B	A	B	B	B	B	A	A	B	B	C	C	B	B	B
115	B	B	A	B	B	B	A	A	B	B	B	C	B	B	B
116	B	B	B	B	B	B	C	B	C	C	C	C	C	C	C
117	C	B	B	B	B	B	C	B	C	C	C	C	C	C	C
118	C	C	B	B	B	B	B	B	B	B	C	C	C	B	B
119	C	C	C	C	B	B	C	B	C	C	C	C	C	C	C
120	B	B	B	B	B	B	A	B	B	B	C	A	B	B	B
121	B	B	B	C	B	B	B	B	B	C	C	C	B	B	C
122	C	B	B	C	B	B	B	B	C	C	C	C	C	C	C
123	B	B	B	B	B	B	A	B	B	B	C	C	B	B	B
124	B	B	B	C	B	B	B	B	B	B	C	C	B	B	B
125	B	B	B	B	B	B	B	B	B	A	A	B	B	B	B
126	B	A	B	B	A	B	A	A	B	B	C	B	B	B	B
127	B	B	B	B	B	B	A	A	B	B	B	C	B	B	B
128	B	B	B	B	A	B	A	B	B	B	A	C	B	B	B
129	B	B	B	B	B	B	B	B	B	B	B	C	B	B	B
130	B	B	B	B	B	B	A	A	B	B	A	C	B	B	B
131	B	B	B	B	B	B	A	A	B	B	C	C	B	B	B
132	B	B	B	B	A	B	A	A	B	B	B	C	B	B	B
133	B	B	B	B	B	B	A	A	B	B	B	C	B	B	B
134	C	C	B	B	B	B	C	B	C	C	C	C	C	C	C
135	B	B	B	B	A	B	A	A	B	B	A	C	B	B	B
136	B	B	B	B	A	B	A	A	B	B	B	C	B	B	B
137	B	B	B	B	B	B	B	B	B	B	B	C	B	B	B
138	B	B	B	B	B	B	B	B	B	B	B	C	C	B	B
139	B	B	B	B	B	B	C	C	C	C	C	C	C	C	C
140	C	C	B	C	B	B	C	B	C	C	C	C	C	C	C
141	C	C	B	B	B	B	C	B	B	C	C	C	C	C	C
142	B	B	B	B	B	B	A	B	B	B	C	B	B	B	B
143	B	B	B	B	B	B	B	B	B	B	C	C	B	B	B
144	C	B	B	B	B	B	B	A	B	B	C	C	B	B	B
145	B	B	A	B	B	A	A	A	B	B	B	B	B	B	B
146	A	A	A	A	A	A	A	A	B	B	A	B	A	B	B
147	A	B	A	B	B	A	A	A	B	B	B	B	A	B	B
148	B	B	A	B	B	A	A	A	B	B	A	C	B	B	B
149	C	C	B	B	B	B	C	B	B	B	C	C	B	B	B
150	B	B	B	B	B	B	B	B	B	C	C	C	B	B	B
151	C	B	B	B	B	B	B	B	B	B	C	C	B	B	B
152	B	B	B	B	B	B	A	A	B	B	C	C	B	B	B
153	B	B	B	B	B	B	C	B	B	C	C	C	C	C	C
154	A	A	A	B	A	B	A	B	B	C	C	C	B	B	C
155	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
156	C	B	B	B	B	B	B	B	C	C	C	C	C	C	C
157	B	B	B	B	B	B	B	B	C	C	C	C	C	C	C
158	C	B	B	B	B	B	B	B	B	C	C	C	C	C	C
159	C	B	B	B	B	B	B	B	B	C	C	C	C	C	C
160	B	B	B	B	B	B	B	B	C	C	C	C	C	C	C
161	B	B	B	B	B	B	B	B	C	C	C	C	C	C	C
162	B	C	B	B	B	B	B	B	C	C	C	C	C	C	C
163	C	C	B	B	B	B	B	B	B	C	C	C	C	C	C
164	C	C	C	C	B	B	C	C	C	C	C	C	C	C	C
165	B	B	B	C	B	B	C	B	C	C	C	C	C	C	C
166	B	B	B	B	B	B	B	B	B	C	C	C	C	B	C
167	B	B	B	B	B	B	C	B	B	C	C	C	C	C	C
168	B	B	B	B	B	B	B	B	B	C	C	C	C	C	C
169	B	A	B	B	B	B	A	B	B	C	C	C	B	B	C
170	B	B	B	B	B	B	A	B	B	C	C	C	C	C	C
171	B	B	B	B	B	B	B	B	B	C	C	C	C	C	C
172	C	B	B	B	B	B	B	B	C	C	C	C	C	C	C
173	B	B	B	B	B	B	A	B	B	C	C	C	C	C	C
174	B	B	B	B	B	B	B	B	B	C	C	C	C	C	C
175	B	B	B	C	B	B	B	B	B	C	C	C	B	B	C
176	B	B	B	B	B	B	B	B	C	C	C	C	C	C	C
177	C	B	B	B	B	B	C	B	C	C	C	C	C	C	C
178	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
179	C	C	B	B	B	B	B	B	B	B	C	C	B	B	B
180	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
181	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
182	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
183	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
184	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
185	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
186	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
187	B	B	B	B	B	B	C	B	C	C	C	C	C	C	C
188	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
189	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
190	C	C	C	C	C	C	C	B	C	C	C	C	C	C	C
191	C	B	B	B	B	B	B	B	B	C	C	C	C	B	B
192	B	B	B	B	B	B	B	B	B	B	C	C	B	B	B
193	C	C	B	B	B	B	C	B	B	B	C	C	C	C	B
194	C	C	B	B	B	B	C	B	B	B	C	C	C	B	B
195	C	B	B	B	B	B	B	B	B	C	C	C	B	B	C
196	C	C	C	C	C	B	C	B	C	C	C	C	C	C	C
197	B	B	B	B	B	B	B	B	B	C	C	C	C	B	C
198	B	B	B	B	B	B	C	B	C	C	C	C	C	C	C
199	C	C	C	C	B	C	C	B	C	C	C	C	C	C	C
200	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
201	C	C	C	C	B	C	C	B	C	C	C	C	C	C	C
202	C	C	C	B	B	B	C	B	C	C	C	C	C	C	C
203	C	C	B	B	B	B	C	B	C	C	C	C	C	C	C
204	C	C	C	C	B	C	C	B	C	C	C	C	C	C	C
205	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
206	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
207	B	B	B	B	B	B	B	B	B	B	B	C	C	B	B
208	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
209	A	A	B	B	B	B	B	B	B	B	B	B	B	B	B
210	A	A	A	B	A	A	A	A	B	B	B	B	B	B	B
211	C	B	B	C	B	B	C	B	C	C	C	C	C	C	C
212	A	A	B	B	A	B	A	B	B	C	B	C	B	B	C
213	B	B	B	B	A	B	A	A	B	B	A	A	B	B	B
214	B	B	B	B	B	B	B	B	B	B	A	C	B	B	B
215	B	B	B	B	B	B	B	B	B	B	B	C	B	B	B
216	C	C	B	B	B	B	C	B	B	B	C	C	C	B	B
217	B	B	B	B	B	B	A	A	B	B	B	B	B	B	B
218	A	A	A	B	A	A	A	A	B	B	B	B	B	B	B
219	B	B	B	B	B	B	C	B	C	C	C	C	C	C	C
220	A	A	A	B	A	A	A	A	B	B	A	B	B	B	B
221	B	B	B	B	B	B	A	A	B	C	B	C	B	B	C
222	B	B	C	B	B	B	A	B	B	C	C	C	C	B	C
223	B	B	B	B	B	B	B	B	B	B	B	C	B	B	B
224	A	A	B	B	A	A	A	A	B	B	B	B	B	B	B
225	B	B	B	B	B	B	B	B	B	B	B	C	B	B	B
226	B	B	B	B	B	B	A	A	B	B	C	C	B	B	B
227	B	B	B	B	B	B	B	B	B	C	C	C	C	C	C
228	C	C	C	C	B	C	B	B	C	C	C	C	C	C	C
229	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
230	B	B	B	B	A	B	A	A	B	B	B	C	B	B	B
231	B	B	B	B	B	B	C	B	B	B	C	C	B	B	B
232	B	B	B	B	B	B	B	B	B	B	B	C	B	B	B
233	B	B	B	B	B	B	B	B	B	B	B	C	B	B	B
234	B	B	B	B	B	B	A	B	B	B	B	C	B	B	B
235	B	B	B	B	B	B	B	B	C	C	C	C	C	C	C
236	B	B	B	B	B	B	B	B	B	B	B	C	B	B	B
237	B	B	B	B	B	B	B	B	B	B	B	C	B	B	B
238	B	B	B	B	B	B	C	C	C	C	C	C	C	C	C
239	B	B	B	B	B	B	A	B	B	C	B	C	B	B	C
240	B	B	B	B	B	B	B	B	B	C	C	C	C	C	C
241	B	B	B	B	B	B	B	B	B	C	C	C	C	C	C
242	B	B	B	B	B	B	B	B	B	B	B	C	C	B	B
243	B	A	B	B	B	B	B	B	B	B	A	B	B	B	B
244	A	A	A	B	A	A	A	A	B	B	A	B	B	B	NT
245	B	B	B	B	A	B	A	A	B	B	B	C	B	B	B
246	B	B	B	B	B	B	A	A	B	B	B	C	B	B	B
247	B	B	A	B	B	B	C	C	C	C	C	C	C	C	C
248	B	B	A	B	B	B	C	C	C	C	C	C	C	C	C
249	B	C	B	B	C	B	C	C	C	C	C	C	C	C	C
250	B	B	A	B	B	B	C	C	C	C	C	C	C	C	C
251	B	A	A	B	B	B	C	C	C	C	C	C	C	C	C
252	B	B	A	B	B	B	C	C	C	C	C	C	C	C	C
253	B	B	B	B	B	B	C	C	C	C	C	C	C	C	C
254	B	B	B	C	B	B	C	B	C	C	C	C	C	C	C
255	C	B	B	C	B	B	C	B	C	C	C	C	C	C	C
256	B	B	B	B	B	B	C	C	C	C	C	C	C	C	C
257	B	A	B	B	A	A	A	A	B	B	C	B	B	B	B
258	A	A	A	B	A	A	A	A	A	B	A	B	B	B	B
259	B	B	B	B	B	A	B	A	B	B	B	C	B	B	B
260	B	A	B	B	A	A	A	B	B	B	C	A	B	B	B
261	A	A	B	B	A	A	A	A	B	B	C	B	B	B	B
262	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
263	B	B	B	B	B	B	A	A	B	B	A	C	B	B	B
264	B	B	B	B	B	B	C	C	C	C	C	C	C	C	C
265	C	B	B	B	B	B	C	C	C	C	C	C	C	C	C
266	B	B	B	B	B	B	B	B	B	C	C	C	C	B	C
267	B	B	B	B	B	B	B	B	B	C	C	C	C	C	C
268	C	C	B	B	B	B	C	C	C	C	C	C	C	C	C
269	B	B	B	B	B	B	C	B	B	B	B	C	C	B	B
270	A	A	B	B	B	B	A	B	B	B	B	B	B	B	B
271	B	B	B	B	B	B	A	A	B	B	C	C	B	B	B
272	B	B	B	B	B	B	A	A	B	B	C	C	B	B	B
273	B	B	B	B	B	B	A	A	B	B	C	C	B	B	B
274	C	B	B	B	B	B	B	B	B	C	C	C	B	B	C
275	B	B	B	B	B	B	A	B	B	B	C	B	B	B	B
276	C	B	B	B	B	B	B	C	B	B	C	C	B	B	B
277	C	B	B	B	B	B	B	A	B	B	C	B	B	B	B
278	C	C	B	C	B	B	A	B	B	B	C	C	C	B	B
279	B	B	B	B	A	B	A	A	B	B	C	B	B	B	B
280	C	B	B	C	B	B	B	B	B	C	C	C	C	B	C
281	B	B	B	B	B	B	B	B	B	B	A	C	B	B	B
282	B	A	B	B	B	B	B	B	B	B	B	C	B	B	B
283	B	B	B	B	B	B	B	B	B	B	A	C	B	B	B
284	C	B	B	C	B	B	C	B	C	C	C	C	C	C	C
285	B	B	B	B	B	B	B	B	B	C	C	C	C	B	C
286	A	A	B	B	A	B	B	B	B	B	B	B	B	B	B
287	B	B	B	B	B	B	C	B	B	B	B	C	B	B	B
288	C	B	B	B	B	B	B	B	C	C	C	C	C	C	C
289	B	B	B	B	B	B	B	B	B	B	B	C	B	B	B
290	B	B	B	B	B	B	B	B	B	C	C	C	C	B	C
291	B	B	B	B	B	B	A	B	B	C	C	C	C	B	C
292	A	A	B	B	A	B	A	A	B	B	B	B	B	B	B
293	B	A	B	B	A	B	A	A	B	B	A	B	B	B	B
294	A	A	B	C	B	B	A	B	B	B	C	C	B	B	C
295	A	A	B	B	A	A	B	B	B	B	A	B	B	B	B
296	B	B	B	B	B	B	A	B	B	B	B	C	B	B	B
297	B	B	B	B	B	B	B	B	B	B	B	C	B	B	B
298	B	B	B	B	B	B	C	B	B	C	C	C	C	C	C
299	B	A	B	B	A	B	A	A	B	C	C	A	B	B	C
300	C	B	B	C	B	B	C	B	B	C	C	C	C	C	C
301	B	B	B	B	B	B	B	B	B	B	B	C	B	B	B
302	B	A	B	B	A	B	A	A	B	C	C	C	B	B	C
303	B	B	B	C	B	B	A	B	B	C	C	C	C	B	C
304	C	B	B	B	B	B	C	C	C	C	C	C	C	C	C
305	C	C	B	B	B	B	C	C	C	C	C	C	C	C	C
306	C	C	C	C	C	C	C	B	C	C	C	C	C	C	C
307	B	B	B	B	B	B	A	B	B	C	C	B	B	B	C
308	B	B	B	B	A	A	A	A	B	B	C	B	B	B	B
309	A	A	A	B	A	A	A	A	B	B	B	C	B	B	B
310	B	B	B	B	B	B	B	B	B	C	C	C	B	B	C
311	A	B	A	B	A	A	A	A	B	B	A	C	B	B	B
312	A	A	B	B	B	B	A	B	B	C	A	B	B	B	B
313	B	B	C	C	B	C	C	C	B	C	C	C	B	B	C
314	C	B	B	B	B	B	B	B	B	C	C	C	B	C	C
315	C	C	B	B	B	B	B	B	B	C	C	C	C	C	C
316	C	B	B	C	B	B	B	B	B	C	C	C	C	C	C
317	C	B	B	C	B	B	B	B	B	C	C	C	B	C	C
318	C	C	C	C	B	C	B	B	C	C	C	C	C	C	C
319	C	C	C	C	B	B	C	B	C	C	C	C	C	C	C
320	C	C	C	C	B	B	B	B	B	C	C	C	C	C	C
321	C	C	C	B	B	B	B	B	B	B	C	C	C	B	B
322	C	C	C	C	B	B	B	B	B	C	C	C	C	C	C
323	B	B	B	B	B	B	B	B	B	C	C	C	B	B	C
324	C	B	B	B	B	B	B	B	B	C	C	C	C	C	C
325	C	B	C	B	B	B	A	B	B	C	C	C	B	B	C
326	C	B	C	B	B	B	B	B	B	C	C	C	B	B	C
327	C	B	B	B	B	B	B	B	B	C	C	C	B	B	C
328	C	C	B	C	B	B	B	B	B	C	C	C	C	C	C
329	C	C	C	C	B	B	C	B	C	C	C	C	C	C	C
330	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
331	C	B	B	B	B	B	B	B	B	C	C	C	C	C	C
332	C	B	C	B	B	B	A	B	B	C	C	C	C	B	B
333	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
334	B	B	C	B	B	B	A	B	B	C	C	C	B	B	C
335	B	B	B	B	B	B	A	B	B	C	C	C	B	B	C
Mino-	0.06	0.06	8	0.03	1	16	0.016	2	0.5	8	0.06	16	2	1	8
cycline
San-	0.5	1	NT	4	8	8	0.25	8	8	32	0.25	>32	8	8	32
cycline
Tige-	0.06	0.06	0.125	0.06	0.03	0.06	0.016	0.016	0.03	0.5	0.25	8	0.25	0.125	1
cycline

Example 15

In Vivo Activities

Murine Systemic Infection Model with Intraperitoneal Challenge of S. aureus
In the model, CD-1 female mice (18-20 grams) were injected intraperitoneally with S. aureus ATCC 13709 (Smith) (1-2×10⁶/mouse) mixed with 5% hog gastric mucin, a bacterial inoculum previously established through virulence studies required to achieve 90-100% lethality within 24-48 hours. Typically, six mice were treated intravenously per dose group one hour post-challenge with either compound 101, compound 105, compound 145, compound 153, compound 166, and compound 218, tetracycline or tigecycline at doses ranging from 0.05-10 mg/kg. After 48 hours, percent survival was calculated and the dose (mg/kg) effecting 50% survival, the protective dose 50% (PD₅₀), was reported along as calculated by Probit analysis.

Results

The PD₅₀values of compound 101, compound 105, compound 145, compound 153, compound 166, and compound 218 and comparators tigecycline and tetracycline in the S. aureus ATCC 13709 mouse septicemia model are described in Table 6.


		PD₅₀
	Cmpd #	mg/kg, i.v., SA Smith Septicemia

	218	1.4
	153	>10
	166	4.3
	145	0.35
	101	0.36
	105	0.25
	Tigecycline	0.97
	Tetracycline	1.0

Claims

1. A compound of Structural Formula I:

or a pharmaceutically acceptable salt thereof, wherein:

X is selected from —OCF₃and —OCH₃;

Y is selected from hydrogen, —(C₁-C₇)alkyl, carbocyclyl, —(C₁-C₄)alkylene-N(R²)(R³), —(C₁-C₄)alkylene-N(R^F)—C(O)—[C(R^5a)(R^5b)]_0-4-N(R²)(R³), —CH═N—OR², —C(O)—N(R²)(R⁴), —NO₂, —COOH, —OH, —N═CH—N(R²)(R³), —N(R²)(R³), —N(R^F)—C(O)—[C(R^5a)(R^5b)]_1-4—N(R²)(R³), —N(R^F)—C(O)—N(R²)(R³), —N(R^F)—C(O)—(C₁-C₆)alkyl, —N(R^F)—C(O)-heterocyclyl, —N(R^F)—C(O)-carbocyclyl, —N(R^F)—S(O)_m—(C₁-C₄) alkylene-N(R²)(R³), —N(R^F)—S(O)_m—N(R²)(R⁴) and —N(R^F)—S(O)_m—(C₁-C₄)alkylene-carbocyclyl;

each R²and R³are independently selected from hydrogen, (C₁-C₇)alkyl, —O—(C₁-C₇)alkyl, —(C₀-C₆) alkylene-carbocyclyl, —(C₀-C₆)alkylene-heterocyclyl, —(C₁-C₆)alkylene-O-carbocyclyl, —(C₁-C₆)alkylene-O-heterocyclyl, —S(O)_m—(C₁-C₆)alkyl, —(C₀-C₄)alkylene-S(O)_m-carbocyclyl, and —(C₀-C₄)alkylene-S(O)_m-heterocyclyl; or R²and R³, taken together with the nitrogen atom to which they are bound form a heterocyclyl, wherein the heterocyclyl optionally comprises 1 to 4 additional heteroatoms independently selected from N, S and O;

each R⁴is independently selected from hydrogen, (C₁-C₆)alkyl, —O—(C₁-C₆)alkyl, —(C₀-C₆) alkylene-carbocyclyl, and —(C₀-C₆)alkylene-heterocyclyl;

each R^5aand each R^5bis independently selected from hydrogen, (C₁-C₆)alkyl, carbocyclyl, heterocyclyl or a naturally occurring amino acid side chain moiety, or

R^5aand R^5btaken together with the carbon atom to which they are bound form a 3-7 membered non-aromatic carbocyclyl or a 4-7 membered non-aromatic heterocyclyl, wherein the heterocyclyl formed by R^5aand R^5boptionally comprises one to two additional heteroatoms independently selected from N, S and O;

R^Fis selected from hydrogen, (C₁-C₇)alkyl, carbocyclyl or heteroaryl, wherein:

each carbocyclyl or heterocyclyl is optionally and independently substituted with one or more substituents independently selected from halo, —(C₁-C₄)alkyl, —OH, ═O, —O—(C₁-C₄)alkyl, —(C₁-C₄)alkylene-O—(C₁-C₄)alkyl, halo-substituted-(C₁-C₄)alkyl, halo-substituted-O—(C₁-C₄)alkyl, —C(O)—(C₁-C₄)alkyl, —C(O)-(fluoro-substituted-(C₁-C₄)alkyl), —S(O)_m—(C₁-C₄)alkyl, —N(R^G)(R^G) and CN;

the heterocyclyl in —N(R^F)—C(O)-heterocyclyl represented by Y is optionally substituted with carbocyclyl or heterocyclyl in addition to the substituents described above, wherein the carbocyclyl or heterocyclyl is optionally substituted with one or more substituentts independently selected from halo, (C₁-C₄)alkyl, —OH, ═O, —O—(C₁-C₄)alkyl, —(C₁-C₄)alkylene-O—(C₁-C₄)alkyl, halo-substituted-(C₁-C₄)alkyl, halo-substituted-O—(C₁-C₄)alkyl, —C(O)—(C₁-C₄)alkyl, —C(O)-(fluoro-substituted-(C₁-C₄)alkyl), —S(O)_m—(C₁-C₄)alkyl, —N(R^G)(R^G) and CN;

each alkyl is optionally and independently substituted with one or more substituents independently selected from halo, —(C₁-C₄)alkyl, —OH, —O—(C₁-C₄)alkyl, —(C₁-C₄)alkylene-O—(C₁-C₄)alkyl, fluoro-substituted-(C₁-C₄)alkyl, —S(O)_m—(C₁-C₄)alkyl and —N(R^G)(R^G);

each R^Gis hydrogen or (C₁-C₄)alkyl, wherein each alkyl in the group represented by R^Gis optionally and independently substituted with one or more substituents independently selected from —(C₁-C₄)alkyl, (C₃-C₆)cycloalkyl, halo, —OH, —O—(C₁-C₄)alkyl, and —(C₁-C₄)alkylene-O—(C₁-C₄)alkyl; and

each m is 1 or 2.

2. The compound of claim 1, wherein:

Y is selected from hydrogen, —(C₁-C₄)alkylene-N(R²)(R³), —CH═N—OR², —C(O)—N(R²)(R⁴), —NO₂, —COOH, —OH, —N═CH—N(R²)(R³), —N(R²)(R³), —N(R^F)—C(O)—[C(R^5a)(R^5b)]_1-4—N(R²)(R³), —N(R^F)—C(O)—(C₁-C₆)alkyl, —N(R^F)—C(O)-heterocyclyl, —N(R^F)—C(O)-carbocyclyl, —N(R^F)—S(O)_m—(C₁-C₄)alkylene-N(R²)(R³), —N(R^F)—S(O)_m—N(R²)(R⁴), and —N(R^F)—S(O)_m—(C₁-C₄) alkylene-carbocyclyl, wherein:

each R²is independently selected from hydrogen, and (C₁-C₃)alkyl;

each R³is independently selected from hydrogen, (C₁-C₆)alkyl, —O—(C₁-C₆)alkyl, —(C₀-C₆) alkylene-carbocyclyl, —(C₀-C₆)alkylene-heterocyclyl, —S(O)_m-—(C₁-C₆)alkyl, —S(O)_m-carbocyclyl, and —S(O)_m-heterocyclyl; and

each R⁴is independently selected from hydrogen, (C₁-C₆)alkyl, —O—(C₁-C₆)alkyl, —(C₀-C₆) alkylene-carbocyclyl, and —(C₀-C₆)alkylene-heterocyclyl; or

R²and R³, taken together with the nitrogen atom to which they are bound form a heterocyclyl, wherein the heterocylyl optionally comprises 1 to 4 additional heteroatoms independently selected from N, S and O;

each R^5aand each R^5bis independently selected from hydrogen, (C₁-C₆)alkyl, carbocyclyl, heterocyclyl, or a naturally occurring amino acid side chain moiety, or

R^5aand R^5btaken together with the carbon atom to which they are bound form a 3-7 membered saturated carbocyclyl or a 4-7 membered saturated heterocyclyl, wherein the saturated heterocyclyl formed by R^5aand R^5boptionally comprises one to two additional heteroatoms independently selected from N, S and O,

R^Fis hydrogen or (C₁-C₃)alkyl; and

each m is 1 or 2, wherein:

each carbocyclyl or heterocyclyl is optionally and independently substituted with one or more substituents independently selected from chloro, fluoro, (C₁-C₄)alkyl, —OH, —O—(C₁-C₄)alkyl, fluoro-substituted-(C₁-C₄)alkyl, —C(O)—(C₁-C₄)alkyl, —C(O)-(fluoro-substituted-(C₁-C₄)alkyl, and —N(R^G)(R^G); and

each alkyl is optionally and independently substituted with one or more substituents independently selected from fluoro, chloro, —O—(C₁-C₄)alkyl, and fluoro-substituted-(C₁-C₄)alkyl.

3. The compound of claim 2, wherein:

Y is selected from hydrogen, —N(R²)(R³), —NH—C(O)—(CH₂)_1-4—N(R²)(R³), —NH—C(O)-heterocyclyl, —NH—C(O)-carbocyclyl, and —NH—S(O)₂—(C₁-C₆)alkyl, wherein:

each R²is independently selected from hydrogen, and (C₁-C₃)alkyl; and

each R³is independently selected from hydrogen, (C₁-C₆)alkyl, and —(C₀-C₆)alkylene-carbocyclyl; or

R²and R³taken together with the nitrogen atom to which they are bound form a heterocyclyl, wherein the heterocylyl optionally comprises 1 to 4 additional heteroatoms independently selected from N, S and O; wherein

each carbocyclyl or heterocyclyl is optionally and independently substituted with one or more substituents independently selected from fluoro, (C₁-C₄)alkyl, —O—(C₁-C₄)alkyl, fluoro-substituted-(C₁-C₄)alkyl, and —N(R^G)(R^G); and

each alkyl is optionally and independently substituted with one or more substituents independently selected from fluoro, —O—(C₁-C₄)alkyl, and fluoro-substituted-(C₁-C₄)alkyl.

4. The compound of claim 3, wherein:

Y is selected from hydrogen, —NH₂, —NH—C(O)—CH₂—N(R²)(R³),

—NH—C(O)-phenyl, —NH—C(O)-thienyl and —NH—S(O)₂—(C₁-C₆)alkyl, wherein:

each R²is independently selected from hydrogen, and (C₁-C₂)alkyl; and

each R³is independently selected from hydrogen, (C₁-C₆)alkyl, and —(C₀-C₁)alkylene-cycloalkyl; or

R²and R³taken together with the nitrogen atom to which they are bound form a saturated heterocyclyl;

ring A represents a 4-7 membered saturated heterocyclyl;

R^3′ is hydrogen or methyl;

each cycloalkyl, phenyl or heterocyclyl is optionally and independently substituted with one or more substituents independently selected from fluoro, (C₁-C₄)alkyl, —O—(C₁-C₄)alkyl, fluoro-substituted-(C₁-C₄)alkyl, and —N(R²)(R²); and

5. The compound of claim 2, wherein:

X is —OCH₃;

Y is selected from —NH—C(O)—CH₂—N(R²)(R³),

and —NH—S(O)_2-—(C₁-C₆)alkyl, wherein the alkyl group in —NH—S(O)₂—(C₁-C₆)alkyl is optionally substituted with fluoro;

each R²is independently selected from hydrogen and —CH₃;

each R³is independently selected from (C₁-C₆)alkyl, and —(C₀-C₁)alkylene-carbocyclyl; or R²and R³, taken together with the nitrogen atom to which they are bound form a saturated heterocyclyl optionally substituted with fluoro;

ring A represents a 4-7 membered saturated heterocyclyl;

R^3′ is hydrogen or methyl;

each carbocyclyl or heterocyclyl is optionally and independently substituted with one or more substituents independently selected from fluoro, (C₁-C₄)alkyl, —O—(C₁-C₄)alkyl, fluoro-substituted-(C₁-C₄)alkyl, and —N(R²)(R²); and

6. The compound of claim 2, wherein:

X is —OCF₃;

Y is selected from —NH₂, —NH—C(O)—CH₂—N(R²)(R³),

—NH—C(O)-phenyl, and —NH—C(O)-thienyl, wherein:

the phenyl in the group represented by Y is optionally substituted with —OCH₃or —N(CH₃)₂;

each R²is independently selected from hydrogen and —CH₃;

each R³is independently selected from (C₁-C₆)alkyl and —(C₀-C₁)alkylene-carbocyclyl, wherein the (C₁-C₆)alkyl is optionally substituted with fluoro or —OCH₃; or

R²and R³, taken together with the nitrogen atom to which they are bound form a saturated heterocyclyl optionally substituted with fluoro or —OCH₃;

ring A represents a 4-7 membered saturated heterocyclyl;

R^3′ is hydrogen or methyl;

7. (canceled)

8. The compound of claim 2, wherein the compound is selected from any one of compound numbers 101, 102, 103, 104, 105, 106, 107, 109, 112, 114, 115, 120, 123, 125, 126, 127, 128, 130, 131, 132, 133, 135, 136, 142, 144, 145, 146, 147, 148, 152, 154, 169, 170, 173, 209, 210, 212, 213, 214, 217, 218, 220, 221, 222, 224, 226, 230, 234, 239, 243, 244, 245, 246, 247, 248, 250, 251, 252, 257, 258, 259, 260, 261, and 263, or a pharmaceutically acceptable salt thereof.

9. A pharmaceutical composition comprising a pharmaceutically acceptable carrier or diluent and a compound of claim 1.

10. A method for treating or preventing an infection or colonization in a subject comprising administering to the subject an effective amount of a compound of claim 1.

11. The method of claim 10, wherein the infection is caused by a Gram-positive organism.

12. The method of claim 11, wherein the Gram-positive organism is selected from the group consisting of Staphylococcus spp., Streptococcus spp., Propionibacterium spp., Enterococcus spp., Bacillus spp., Corynebacterium spp., Nocardia spp., Clostridium spp., Actinobacteria spp., and Listeria spp.

13. The method of claim 10, wherein the infection is caused by a Gram-negative organism.

14. The method of claim 13, wherein the Gram-negative organism is selected form the group consisting of Enterobactericeae, Bacteroidaceae, Vibrionaceae, Pasteurellae, Pseudomonadaceae, Neisseriaceae, Rickettsiae, Moraxellaceae any species of Proteeae, Acinetobacter spp., Helicobacter spp., and Campylobacter spp.

15. The method of claim 10, wherein the infection is caused by an organism selected from the group consisting of rickettsiae, chlamydiae, Legionella spp. Mycoplasma spp., and any other intracellular pathogens.

16-22. (canceled)