US20120190816A9 - Asymmetric synthesis of peptides - Google Patents

Asymmetric synthesis of peptides Download PDF

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Publication number
US20120190816A9
US20120190816A9 US13/187,230 US201113187230A US2012190816A9 US 20120190816 A9 US20120190816 A9 US 20120190816A9 US 201113187230 A US201113187230 A US 201113187230A US 2012190816 A9 US2012190816 A9 US 2012190816A9
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group
hydrogen
formula
aryl
optionally substituted
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US20110275784A1 (en
US8399612B2 (en
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Laurence M. Harwood
Ran Yan
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University of Reading
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University of Reading
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    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K5/00Peptides containing up to four amino acids in a fully defined sequence; Derivatives thereof
    • C07K5/04Peptides containing up to four amino acids in a fully defined sequence; Derivatives thereof containing only normal peptide links
    • C07K5/08Tripeptides
    • C07K5/0802Tripeptides with the first amino acid being neutral
    • C07K5/0804Tripeptides with the first amino acid being neutral and aliphatic
    • C07K5/0806Tripeptides with the first amino acid being neutral and aliphatic the side chain containing 0 or 1 carbon atoms, i.e. Gly, Ala
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D265/00Heterocyclic compounds containing six-membered rings having one nitrogen atom and one oxygen atom as the only ring hetero atoms
    • C07D265/281,4-Oxazines; Hydrogenated 1,4-oxazines
    • C07D265/301,4-Oxazines; Hydrogenated 1,4-oxazines not condensed with other rings
    • C07D265/321,4-Oxazines; Hydrogenated 1,4-oxazines not condensed with other rings with oxygen atoms directly attached to ring carbon atoms
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K5/00Peptides containing up to four amino acids in a fully defined sequence; Derivatives thereof
    • C07K5/04Peptides containing up to four amino acids in a fully defined sequence; Derivatives thereof containing only normal peptide links
    • C07K5/06Dipeptides
    • C07K5/06008Dipeptides with the first amino acid being neutral
    • C07K5/06017Dipeptides with the first amino acid being neutral and aliphatic
    • C07K5/06026Dipeptides with the first amino acid being neutral and aliphatic the side chain containing 0 or 1 carbon atom, i.e. Gly or Ala
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K5/00Peptides containing up to four amino acids in a fully defined sequence; Derivatives thereof
    • C07K5/04Peptides containing up to four amino acids in a fully defined sequence; Derivatives thereof containing only normal peptide links
    • C07K5/06Dipeptides
    • C07K5/06008Dipeptides with the first amino acid being neutral
    • C07K5/06017Dipeptides with the first amino acid being neutral and aliphatic
    • C07K5/06034Dipeptides with the first amino acid being neutral and aliphatic the side chain containing 2 to 4 carbon atoms
    • C07K5/06052Val-amino acid
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K5/00Peptides containing up to four amino acids in a fully defined sequence; Derivatives thereof
    • C07K5/04Peptides containing up to four amino acids in a fully defined sequence; Derivatives thereof containing only normal peptide links
    • C07K5/10Tetrapeptides
    • C07K5/1002Tetrapeptides with the first amino acid being neutral
    • C07K5/1005Tetrapeptides with the first amino acid being neutral and aliphatic
    • C07K5/1008Tetrapeptides with the first amino acid being neutral and aliphatic the side chain containing 0 or 1 carbon atoms, i.e. Gly, Ala

Definitions

  • the present invention relates to a novel process for peptide synthesis, by the addition of amino acids to the activated C-terminus of a peptide chain.
  • Peptide synthesis is central to the manufacture of many drugs and medicaments. Peptides or derivatives thereof are used for the treatment of many disorders from antibiotics to anticancer agents. Therefore improving peptide synthesis and the yield of peptide produced by chemical synthesis has been the focus of much research in recent years.
  • Proteins are produced in nature by the stepwise condensation of amino acid monomers on a ribosome. Synthesis of the protein begins from the N-terminal residue and grows towards the C-terminus.
  • the conventional approach to peptide synthesis has concentrated on extension at the N-terminus of a growing peptide. This approach forms the basis of conventional solid phase peptide synthesis.
  • Peptide synthesis solely by extension from the N-terminus is limiting as it renders any peptide synthesis linear in nature, rather than convergent. This can severely increase overall length of synthesis, increase operational time and decrease overall yield with consequent possibilities for the loss of stereochemical fidelity.
  • the present invention provides a new method of producing a peptide by extension from the activated carboxy-terminus of an acyl amino acid residue. This new method overcomes the problems of epimerisation of the terminal amino acid residue during the coupling step.
  • the present invention therefore allows the production of peptides by a convergent approach and provides a new method for the production of potentially biologically important compounds instead of the linear repetitive amino terminal extension approach currently used.
  • the first aspect of the present invention provides a process comprising substitution of an acceptor molecule comprising a group —XC(X)— (preferably —X(CO)—) wherein each X is independently O, S or NR 8 , where R 8 is hydrogen, aliphatic group or an aromatic group, preferably hydrogen, C 1-6 alkyl, C 6-12 aryl, with a nucleophile, wherein the acceptor molecule is cyclised such that said nucleophilic substitution at —XC(X)— occurs without racemisation.
  • the acceptor molecule is preferably a cyclised amino acid or derivative thereof.
  • the acceptor molecule is a compound of formula (II):
  • each X is O, S, or NR 8 , where R 8 is as defined above;
  • R 2 is independently selected from an aliphatic group, such as a C 1-10 branched or straight chain alkyl group, or an aromatic group, such as C 5-12 heteroaryl group or C 6-12 aryl group, each optionally substituted with a group including, for example, OR 13 , SR 13 , N(R 13 ) 2 , CO 2 R 13 , CON(R 13 ) 2 , SO 2 R 12 , SO 3 R 12 , phenyl, imidazolyl, indolyl, hydroxyphenyl or NR 13 C( ⁇ NR 13 )N(R 13 ) 2 ;
  • R 3 is as defined for R 2 or is hydrogen,
  • R 1′ is independently selected from an aliphatic group such as C 1-10 branched or straight chain alkyl group, an aromatic group, such as C 5-12 heteroaryl group or C 6-12 aryl group, each optionally substituted with a group such as OR 13 , SR 13 , N(R 13 ) 2 , CO 2 R 13 , CON(R 13 ) 2 , SO 2 R 12 , SO 3 R 12 , phenyl, imidazolyl, indolyl, hydroxyphenyl or NR 13 C( ⁇ NR 13 )N(R 13 ) 2 ; wherein when Y is NR 8 , R 8 and R 1′ can together form a 4 to 7 membered ring, optionally substituted with a group such as CO 2 R 13 , OR 13 , SR 13 , N(R 13 ) 2 , CO 2 R 13 , CON(R
  • YR 4′ is R 3 ;
  • R 5 is an aromatic group such as C 6-12 aryl, C 5-12 heteroalkyl or an aliphatic group such as C 1-8 branched or straight chain alkyl optionally substituted with a group such as OR 13 , SR 13 N(R 13 ) 2 , CO 2 R 13 , CON(R 13 ) 2 , phenyl, imidazolyl, indolyl, hydroxyphenyl or NR 13 C( ⁇ NR 13 )N(R 13 ), or a linker for attachment of formula (II) to a resin or a linked resin; n is 0, 1, 2 or 3 and m is an integer, such as an integer selected from 1-100.
  • the nucleophilic substitution of the acceptor molecule preferably occurs without epimerisation.
  • the process is carboxy terminal extension of an acceptor molecule, for example an amino acid or peptide.
  • the invention therefore provides a process for the synthesis of a peptide or a peptide analog by carboxy terminal extension, by the addition of a nucleophile to an acceptor molecule, such as a compound of formula (II).
  • R 2 is independently selected from a C 1-10 branched or straight chain alkyl group, C 5-12 heteroaryl group or C 6-12 aryl group, optionally substituted with OR 13 , SR 13 , N(R 13 ) 2 , CO 2 R 13 , CON(R 13 ) 2 , SO 2 R 12 , SO 3 R 12 , phenyl, imidazolyl, indolyl, hydroxyphenyl or NR 13 C( ⁇ NR 13 )N(R 13 ) 2 ; R 3 is as defined for R 2 or is hydrogen, or a group
  • R is hydrogen or as defined from R 1 below; Y is as defined above and R 4 is as defined for R 4 below; R 12 is hydrogen, C 1-6 alkyl, C 6-12 aryl or N(R 13 ) 2 , wherein each occurrence of R 13 is independently hydrogen, C 1-6 alkyl or C 6-12 aryl, R 9 and R 10 are independently hydrogen or a group as defined for R 1′ : or R 9 and R 10 can together form a 4 to 7 membered ring, optionally substituted with CO 2 R 13 , OR 13 , SR 13 , N(R 13 ) 2 , CO 2 R 13 , CON(R 13 ) 2 , C 1-10 alkyl or C 6-12 aryl, wherein said ring can be fully, partially or unsaturated, and wherein the ring may contain one or more additional heteroatoms selected from O, S or N, R 11 is hydrogen or
  • R 5 and X are as defined above;
  • R 7 is a chiral, substituted methylene, such as a group
  • aliphatic group such as a C 1-10 branched or straight chain alkyl group or an aromatic group, such as a C 6-12 aryl group, optionally substituted with OR 13 , SR 13 , N(R 13 ) 2 , CO 2 R 13 , CON(R 13 ) 2 , SO 2 R 12 , SO 3 R 12 , phenyl, imidazolyl, indolyl, hydroxyphenyl or NR 13 C( ⁇ NR 13 )N(R 13 ) 2 , or wherein R 7 and Y together form a 4 to 7 membered ring, optionally substituted with a group such as OR 13 , SR 13 , N(R 13 ) 2 , CO 2 R 13 , CON(R 13 ) 2 , SO 2 R 12 , SO 3 R 12 , phenyl, imidazolyl, indolyl, hydroxyphenyl or NR 13 C( ⁇ NR 13 )N(R 13 ) 2 ,
  • the inventors have surprisingly found that activation of an amino acid or peptide via a cyclic compound as exemplified in formula (II) prevents the formation of an oxazolone thereby allowing the condensation of a compound of formula (III) without concommitant epimerisation.
  • the invention therefore provides peptides via C-terminus extension, said peptides being produced in an enantiomerically and diastereochemically pure form.
  • cyclic activated intermediates in the present invention provides an improved method of peptide synthesis via carboxy-terminal extension.
  • the process of the present invention does not permit epimerisation and therefore guarantees the production of a peptide of correct stereochemistry as the activated carboxyl terminus is held in a cyclic template such that the adjacent amide cannot form the oxazolone.
  • * denotes a stereocenter (asymmetric center).
  • a compound contains a stereocenter (whether marked in the present application with * or not) the stereochemistry of the asymmetric centers may be in the R or S configuration.
  • the compounds of the present application can be provided in enantiomerically pure form or as a mixture of isomers (including a racemic mixture).
  • the compounds of the present inventions are provided in an enantiomerically pure form.
  • the present invention allows maintenance of the desired stereochemistry throughout the synthetic pathway.
  • Y is NH
  • the amino acids to be attached may be of U or D configuration as required.
  • R 1 and R 2 are independently selected from C 1-4 branched or straight chain alkyl optionally substituted with OR 13 , SR 13 , N(R 13 ) 2 , CO 2 R 13 , CON(R 13 ) 2 , phenyl, imidazolyl, indolyl, hydroxyphenyl or NR 13 C( ⁇ NR 13 )N(R 13 ) 2 , preferably optionally substituted with OH, SH, NH 2 , CO 2 H, CONH 2 , phenyl, imidazolyl, indolyl, hydroxyphenyl or NH(C ⁇ NH)NH 2 .
  • R and R are independently selected from C 1 alkyl optionally substituted with OH, SH, CO 2 H, CONH 2 , phenyl, imidazolyl, indolyl or hydroxyphenyl; C 2 alkyl optionally substituted with OH, CO 2 H, CONH 2 or SCH 3 ; C 3 alkyl optionally substituted with NHC( ⁇ NH)NH 2 or C 4 alkyl optionally substituted with NH 2 .
  • the integer, m is preferably 1-50, more preferably 1 to 30, most preferably 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 or 20.
  • the integer n is preferably 0 or 1.
  • R is preferably Ci -4 alkyl, more preferably methyl, ethyl, n-propyl, iso-propyl, n-butyl or tert-butyl, phenyl, naphthyl, anthracenyl or phenanthracenyl, more preferably phenyl or hydrogen.
  • R 3 may also be substituted pipecolic acid or derivative thereof, ⁇ -alkoxy- ⁇ -amino acids, cc, ⁇ -diamino acids, ⁇ -substituted dehydroamino acids, canavanine, cysteinesulphonamide, homocysteinesulphonamide, ⁇ , ⁇ -unsaturated amino acids. substituted 4-hydroxyprolines, 4-hydroxtyornithines, imino sugars, Fmoc -BPC—OH, Fmoc-TPG-OH and Fmoc-CAA-OH, or (5)-3,5-dihydroxyphenylglycine.
  • amino acids, hydroxy acids and derivatives thereof contain functional groups which require protection.
  • amino terminus of an amino acid may be protected by one or more of a benzyloxycarbonyl group, a t-butoxycarbonyl group, a 2-(4-biphenylyl)-isopropoxycarbonyl group, a fluorenylmethoxycarbonyl group, a triphenylmethyl group and/or a 2-nitrophenylsulphenyl group.
  • the carboxyl group can be protected by one or more of an ester group especially a methyl, ethyl, benzyl, t-butyl or phenyl ester.
  • R 4 is preferably methyl, ethyl, benzyl, t-butyl or phenyl.
  • the protecting groups may be removed after each coupling reaction (for example, the carboxyl protection) or alternatively at the end of the synthesis (for example, the side chain protection and/or the N-terminal group).
  • the invention provides a process for production of a compound of formula (Ia)
  • the invention provides a process for production of a compound of formula (Ib)
  • the ester can be further derivatized, including for example, amidation.
  • the nucleophilic substitution of the acceptor molecule of the first aspect of the invention can be carried out using reaction conditions known in the art. In some circumstances, for example where the nucleophile and/or the acceptor molecule are sterically hindered it may be necessary for example to use high pressure such as around 19-20 bar, and/or longer reaction times such as 12-72 hours, preferably 24-48 hours. Alternatively, the reaction can be carried out in the presence of a reagent such as AlMe 3 . When the substitution is carried out on the solid phase, the reaction can be promoted by the use of an excess of nucleophile.
  • the invention further relates to a process for the production of a compound of formula (II) (above) by the reaction of a compound of formula (IV)
  • the process of the present invention can particularly be used for the production of cyclic compounds, for example cyclic peptides.
  • the present invention therefore encompasses a compound of formula (VII);
  • m is an integer of 1 to 50, preferably 1 to 30, more preferably 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17. 18, 19 or 20; and R 1′ , R 2 , R 5 , R 9 , R 10 , R 11 , X and n are as defined above.
  • the compound of formula (VII) can be used in a process for the formation of a compound of formula (I) (illustrated below as (Ic));
  • R 14 is —[C(O)—C(R 9 )(R 1′ )—N(R 10 )—] m —(R 11 ) and R 1′ , R 2 , R 6 , R 7 , R 9 , R 10 , R 11 , m, X and Y are as described above, comprising reaction of a compound of formula (VII) with a compound of formula (III) as described above.
  • the compound of formula (I) can then be converted into a compound of formula (VI) by removal of the group R 6 as described below.
  • the substituents R 1 and R 9 can be replaced by a group ( ⁇ R 1 ) wherein R 1 is as described above.
  • the present invention therefore provides a compound of formula (VIII).
  • the invention provides a process for the production of a compound of formula (VIII) comprising cyclisation of a compound of formula (VII) wherein m is 3 or more. Reaction of the compound of formula (VIII) under reducing conditions (for example in the presence of lithium and liquid ammonia) results in the formation of a compound of formula (IX);
  • R 1′ , R 2 , R 9 , X and m are as defined above.
  • the present invention therefore provides a compound of formula (IX) and a process for the production of a compound of formula (IX) comprising the reduction of a compound of formula (VIII).
  • a compound of formula II may be attached to a resin via the group R 5 and the peptide synthesis carried out via solid phase peptide synthesis.
  • R 5 is a linker it can be a group OR 13 , N(R 13 ) 2 , CO 2 R 13 or Se, or an alkyl group having 1 to 4 carbons or a C 6-12 aryl group, said alkyl and aryl groups being optionally substituted with OR 13 , N(R 13 ) 2 , CO 2 R 13 or SR 13 .
  • part of the synthesis may be carried out on the solid phase and part in solution.
  • the compound of formula II can be attached to and removed from a resin using methods known in the art.
  • Solid phase peptide synthesis using the process of the present invention may be carried out by using procedures attaching the carboxy-terminal to any resin known in the art.
  • suitable resins include Wang, Merrifield, polyimide, 2-chlorotrityl, Rink, Knorr, DCHD, PAL and any other known in the art.
  • Solid phase coupling partners such as BOP, PyBOP and DCC may be used, as well as any other suitable coupling partners known in the art.
  • a further feature of the first aspect is a process for the production of a compound of formula (VI)
  • a second aspect of the present invention relates to the compounds described herein, including a compound of formula (II)
  • R 2 is independently selected from a C 1-10 branched or straight chain alkyl group, C 5-12 heteroaryl group or C 6-12 aryl group, optionally substituted with OR 13 , SR 13 , N(R 13 ) 2 , CO 2 R 13 , CON(R 13 ) 2 , SO 2 R 12 , SO 3 R 12 , phenyl, imidazolyl, indolyl, hydroxyphenyl or NR 13 C( ⁇ NR 13 )N(R 13 ) 2 ; R 3 is as defined for R 2 or is hydrogen, or a group
  • R 1 is independently selected from a C 1-10 branched or straight chain alkyl group, C 5-12 heteroaryl group or C 6-12 aryl group optionally substituted with OR 13 , SR 13 , N(R 13 ) 2 , CO 2 R 13 , CON(R 13 ) 2 , SO 2 R 12 , SO 3 R 12 , phenyl, imidazolyl, indolyl, hydroxyphenyl or NR 13 C( ⁇ NR 13 )N(R 13 ) 2 wherein when Y is NR 8 , R 8 and R 1′ can together form a 4 to 7 membered ring, optionally substituted with CO 2 R 13 , OR 13 , SR 13 , N(R 13 ) 2 , CO 2 R 13 , CON(R 13 ) 2 , C 1-10 alkyl or C 6-12 aryl, wherein said ring can be
  • R 1 and R 2 are independently selected from C 1-4 branched or straight chain alkyl optionally substituted with OR 13 , SR 13 , N(R 13 ) 2 , CON(R 13 ) 2 , phenyl, imidazolyl, indolyl, hydroxyphenyl or NR 13 C( ⁇ NR 13 )N(R 13 ) 2 .
  • R 1 and R 2 are independently selected from C 1 alkyl optionally substituted with OR 13 , SR 13 , CO 2 R 13 , CO N(R 13 ) 2 , phenyl, imidazolyl, indolyl or hydroxyphenyl; C 2 alkyl optionally substituted with OR 13 , CO 2 R 13 , CON(R 13 ) 2 or SCH 3 ; C 3 alkyl NR 13 C( ⁇ NR 13 )N(R 13 ) 2 or C 4 alkyl optionally substituted with N(R 13 ) 2 .
  • R 4 is a carboxyl protecting group, such as an ester group.
  • R 4 is preferably methyl, ethyl, benzyl, t-butyl or phenyl.
  • R 5 is a linker it can be OR 13 , N(R 13 ) 2 .
  • the integer, m is preferably 1-50, more preferably 1 to 30, most preferably 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 or 20.
  • the integer n is preferably 0 or 1.
  • R 8 is preferably C 1-4 alkyl, more preferably methyl, ethyl, n-propyl, iso-propyl, n-butyl or tert-butyl, phenyl, naphthyl, anthracenyl or phenanthracenyl, more preferably phenyl or hydrogen.
  • R 13 is preferably hydrogen or C 1-4 alkyl, more preferably methyl, ethyl, n-propyl, iso-propyl, n-butyl or tert-butyl.
  • alkyl relates to both straight chain and branched, saturated or unsaturated alkyl radicals having, for example, 1 to 10 carbon atoms, preferably 1 to 8 carbon atoms and most preferably 1 to 4 carbon atoms including but not limited to methyl, ethyl, n-propyl, isopropyl, n-butyl, sec-butyl, isobutyl, tert-butyl n-pentyl, n-hexyl, n-heptyl, n-octyl.
  • Alkyl therefore relates to a group having 1, 2, 3, 4, 5, 6, 7, 8, 9 or 10 or more carbon atoms.
  • alkyl also encompasses cycloalkyl radicals of 3 to 12 carbon atoms, preferably 4 to 8 carbon atoms, and most preferably 5 to 6 carbon atoms including but not limited to cyclopropyl, cyclobutyl, CH 2 -cyclopropyl, CH 2 -cyclobutyl, cyclopentyl or cyclohexyl. Cycloalkyl groups may be optionally substituted or fused to one or more carbocyclyl or heterocyclyl group.
  • Haloalkyl relates to an alkyl radical preferably having 1 to 8 carbon atoms, preferably 1 to 4 carbon atoms substituted with one or more halide atoms for example CH 2 CH 2 Br, CF 3 or CCl 3 .
  • An alkyl group may be optionally interrupted by one or more O, S or NH groups, preferably one or more O atoms to form an alkoxy group.
  • An alkyl group may be optionally interrupted by one or more double or triple bonds to form a group including but not limited to ethylene, n-propyl-1-ene, n-propyl-2-ene, isopropylene, ethynyl, 2-methylethynyl etc.
  • Aryl means an aromatic 6 to 12 membered hydrocarbon or heteroaryl containing one ring or being fused to one or more saturated or unsaturated rings including but not limited to phenyl, naphthyl, anthracenyl or phenanthracenyl.
  • Heteroaryl means an aromatic 5 to 12 membered aryl containing one or more heteroatoms selected from N, O or S and containing one ring or being fused to one or more saturated or unsaturated rings including but not limited to furan, imidazole, indole, oxazole, purine, pyran, pyridine, pyrimidine, pyrrole, tetrahydrofuran, thiophene and triazole.
  • the aryl and heteroaryl groups can be fully saturated, partially saturated or unsaturated.
  • Halogen means F, CI, Br or I, preferably F.
  • a third aspect of the invention relates to the use of a compound of formula (II) as defined in the first and/or second aspects of the invention in asymmetric synthesis.
  • the reaction was quenched by the addition of saturated Na 2 CO 3 (20 mL), the aqueous phase was extracted with diethyl diethyl ether (3 ⁇ 10 mL) and the combined extracts were dried over MgSO 4 .
  • the solvents were removed in vacuo and the crude material was purified by flash column chromatography on silica, eluting with diethyl ether and dichloromethane (9:1) to furnish the title compound as fine colourless needles (270 mg, 74%); m.p.
  • N-Fmoc-L-alanine (2.00 g, 6.4 mmol, 1.0 equiv.) in anhydrous dichloromethane (40 mL) was added thionyl dichloride (4.70 mL, 64 mmol, 10 equiv.). The resulting mixture was refluxed for 2 hours under an atmosphere of nitrogen. The solvent and excess of thionyl chloride were removed in vacuo and the crude N-Fmoc-L-alanine acid chloride was partially purified by recrystallization from dichloromethane and hexane (1.74 g, 86%); m.p. 88-90° C. (lit. m.p.
  • N-Fmoc-L-alanine (3.00 g, 8.7 mmol, 1.0 equiv.) in anhydrous dichloromethane (40 mL) was added thionyl chloride (6.5 mL, 87 mmol, 10.0 equiv.).
  • thionyl chloride 6.5 mL, 87 mmol, 10.0 equiv.
  • the resulting mixture was refluxed for 2 hours under an atmosphere of nitrogen.
  • the solvent and excess of thionyl dichloride were removed in vacuo and the crude N-Fmoc-L-alanine acid chloride was partially purified by recrystallization from dichloromethane and hexane (2.50 g, 80%); m.p. 75-79° C. (lit. m.p.
  • the precipitate can be either used as crude in next step or purified by recrystallization from diethyl ether yield the title compound as white fine needles (3.55 g, 82%); nip 140.0-141.0° C.; v (max) (KBr) 3395 (N—H), 2973 (C—H), 1757 (C ⁇ O, ester), 1715 (C ⁇ O, ketone), 1692 (C ⁇ O, carbamate) cm 1 ; ⁇ H (250 MHz, CDCl 3 ) 7.93-7.24 (1OH, m, Ph), 5.50 (1H, d, /16.4 Hz, OCH 2 ⁇ 1), 5.31 (1H, d, /16.4 Hz, OCH 2 ⁇ 1), 4.97 (1H, d, 8.1 Hz, NH), 4.75 (1H, dd, /7.2 Hz, r 6.1 Hz, CH), 3.36 (1H, dd, /5.4 Hz, r 14.1 Hz, PhCH, X
  • the solid was separated by filtration through a sinter, washed with diethyl ether (2 ⁇ 30 mL) and dried in vacuo to furnish the amino ester hydrobromide which was subsequently dissolved in pH 5 acetate buffer (100 mL, 0.2 M, prepared from 70 parts 0.2 M aqueous sodium acetate and 30 parts 0.2 M aqueous acetic acid). The resulting mixture was stirred under nitrogen for 12 hours during which time yellow oil was formed.
  • pH 5 acetate buffer 100 mL, 0.2 M, prepared from 70 parts 0.2 M aqueous sodium acetate and 30 parts 0.2 M aqueous acetic acid.
  • the precipitate can be either used as crude in next step or purified by flash column chromatography on silica, eluting with petrol and diethyl ether (3:2) to furnish the title compound as white solid (1.56 g, 65%); v (max) (KBr) 2932 (C—H), 1751 (C ⁇ O), cm ′′1 ; m.p. 57.0-59.0° C. (lit.
  • reaction was quenched by the addition of saturated copper sulphate (20 mL) and the mixture was extracted with diethyl ether (3 ⁇ 20 mL). The combined organic extracts were dried over MgSO 4 . The solvents were removed in vacuo and the crude product was purified by flash column chromatography on silica, eluting with petrol:diethyl ether (1:9) to furnish the title compound as fine colourless needles (76 mg.
  • PhCH 4.94-4.92 (0.5H, m, NHCHCH 3 ), 4.80-4.78 (0.5H, m, NHCHCH 3 ), 4.65-4.62 (0.5H, m, NCHCH 3 ), 4.27-4.18 (3.5H, m, OCH 2 CH, and CH 2 OH ⁇ 0.5), 4.09-3.93 (2.5H, m, CH 2 OH ⁇ 1.5 and NHCHCH 3 ), 3.62-3.60 (0.5H, m, NCHCH 3 ⁇ 1), 1.44-1.36 (13.5H, s, (CHa) 3 ⁇ 9, CHCH 3 ⁇ 4.5), 1.23 (1.5H, d, /6.63 Hz, CHCH 3 ), 1.13 (1.5H, d, /7.35 Hz, CHCH 3 ), 0.92 (1.5H, d, /7.07 Hz, CHCH 3 ); ⁇ c (62.5 MHz, OMSO-d) 173.4, 172.9, 171.9, 171.6, 169.7, 156.0
  • the resulting solution was stirred at room temperature for 3.5 hours before —N 5 N-diisopropylethylamine (0.40 mL, 2.26 mmol, 1.1 equiv.), N-Fmoc-L-alanine (0.76 g, 2.46 mmol, 1.2 equiv.) and bromotripyrrolidinophosphonium hexafluorophosphate (1.21 g, 2.46 mmol, 1.2 equiv.) were added. The resulting solution was stirred for another 18 hours during which time a white precipitate was formed.
  • the resulting solution was stirred at room temperature for 5 hours before N,N-diwcpropylethylamine (0.026 mL, 0.144 mmol, 0.7 equiv.), N-Fmoc-L-alanine (76 mg, 0.246 mmol, 1.2 equiv.) and bromotripyrrolidinophosphonium hexafluorophosphate (0.121 g, 0.246 mmol, 1.2 equiv.) were added. The resulting solution was stirred for another 19 hours during which time a white precipitate was formed.

Abstract

The present invention provides a process comprising substitution of an acceptor molecule comprising a group —XC(O)— wherein X is O, S or NR8, where R8 is C1-6 alkyl, C6-12 aryl or hydrogen, with a nucleophile, wherein the acceptor molecule is cyclised such that said nucleophilic substitution at —XC (O)— occurs without racemisation. This process has particular application for the production of a peptide by extension from the activated carboxy-terminus of an acyl amino acid residue without epimerisation.

Description

    RELATED APPLICATION
  • This application is a continuation-in-part of U.S. application Ser. No. 12/066,727, filed Mar. 13, 2008, which is the U.S. national stage of International Application No. PCT/GB05/03797, which designated the United States and was filed on Sep. 30, 2005, published in English, which claims priority under 35 U.S.C. §119 or 365 to United Kingdom, Application No. 0518667.1, filed 13 Sep. 2005. The entire teachings of the above applications are incorporated herein by reference.
  • BACKGROUND OF THE INVENTION
  • The present invention relates to a novel process for peptide synthesis, by the addition of amino acids to the activated C-terminus of a peptide chain. Peptide synthesis is central to the manufacture of many drugs and medicaments. Peptides or derivatives thereof are used for the treatment of many disorders from antibiotics to anticancer agents. Therefore improving peptide synthesis and the yield of peptide produced by chemical synthesis has been the focus of much research in recent years.
  • Chemical synthesis of proteins or peptides has been a particular focus in the art. The chemical synthesis of proteins or peptides allows the production of purified peptides of specific amino acid sequence. It also allows the production of truncated sequences of amino acids and allows the introduction of non-natural amino acid derivatives.
  • Proteins are produced in nature by the stepwise condensation of amino acid monomers on a ribosome. Synthesis of the protein begins from the N-terminal residue and grows towards the C-terminus. The conventional approach to peptide synthesis has concentrated on extension at the N-terminus of a growing peptide. This approach forms the basis of conventional solid phase peptide synthesis. Peptide synthesis solely by extension from the N-terminus is limiting as it renders any peptide synthesis linear in nature, rather than convergent. This can severely increase overall length of synthesis, increase operational time and decrease overall yield with consequent possibilities for the loss of stereochemical fidelity.
  • To overcome the problems associated with N-terminal extension of a peptide, it could be envisaged that the synthesis could instead provide extension of a peptide from the C-terminal. However, attempts at peptide synthesis in the N to C direction have been generally unsuccessful due to epimerisation of the carboxy-terminal amino acid residue. This is due to the tendency of carboxy-terminal-activated acylamino acids and peptides to form oxazolones. As illustrated below, the formation of the oxazolone allows rapid racemisation of the alpha-position of the terminal amino acid residue of the acyl amino acid or peptide.
  • Figure US20120190816A9-20120726-C00001
  • This racemisation prevents the production of stereochemically homogeneous peptides by C-terminus extension.
  • It will be appreciated that the production of isomerically pure compounds is a particular requirement in the art. Any method which results in the production of a mixture of isomers will require the use of time consuming and expensive purification steps to separate the isomers. Chiral compounds which are administered to humans or animals are usually required in enantiomerically pure form. The presence of unwanted isomers even in low concentrations can reduce the potency of the compound and can produce unwanted and in some cases disastrous side effects. The incorporation of an unwanted enantiomer into a peptide chain (for example the incorporation of a D-amino acid into a peptide composed of L-amino acids) may disrupt the folding and/or 3D shape of the peptide, thus resulting in a peptide which may have unpredictable binding activities and/or biological properties. The production of enantiomerically pure peptides is therefore of paramount importance.
  • Various attempts have been made to overcome this problem. Iorga, B and Campagne, J-M (2004, Synlett 10, 1826-1828) attempted to reduce the degree of epimerisation by improving the rate of peptide bond formation over the rate of oxazolone formation, so that peptide bond formation was the predominant reaction. However, this method does not entirely prevent the formation of the oxazolone and therefore epimerisation at the carboxy-terminal activated amino acid residue occurs. Native chemical ligation has been developed to overcome problems of carboxy-terminal extension but is ordinarily restricted to couplings in which the amino-terminal partner is an assisting cysteine residue and is not applicable to general techniques of automated solid phase peptide synthesis. The application of native chemical ligation to other amino-terminal amino acids has had very limited success.
  • The present invention provides a new method of producing a peptide by extension from the activated carboxy-terminus of an acyl amino acid residue. This new method overcomes the problems of epimerisation of the terminal amino acid residue during the coupling step. The present invention therefore allows the production of peptides by a convergent approach and provides a new method for the production of potentially biologically important compounds instead of the linear repetitive amino terminal extension approach currently used.
  • The first aspect of the present invention provides a process comprising substitution of an acceptor molecule comprising a group —XC(X)— (preferably —X(CO)—) wherein each X is independently O, S or NR8, where R8 is hydrogen, aliphatic group or an aromatic group, preferably hydrogen, C1-6 alkyl, C6-12 aryl, with a nucleophile, wherein the acceptor molecule is cyclised such that said nucleophilic substitution at —XC(X)— occurs without racemisation. The acceptor molecule is preferably a cyclised amino acid or derivative thereof. In particular, the acceptor molecule is a compound of formula (II):
  • Figure US20120190816A9-20120726-C00002
  • wherein each X is O, S, or NR8, where R8 is as defined above;
    R2 is independently selected from an aliphatic group, such as a C1-10 branched or straight chain alkyl group, or an aromatic group, such as C5-12 heteroaryl group or C6-12 aryl group, each optionally substituted with a group including, for example, OR13, SR13, N(R13)2, CO2R13, CON(R13)2, SO2R12, SO3R12, phenyl, imidazolyl, indolyl, hydroxyphenyl or NR13C(═NR13)N(R13)2;
    R3 is as defined for R2 or is hydrogen,
  • Figure US20120190816A9-20120726-C00003
  • or a group —C(R1′) (R9)—N(R10)(R11);
    wherein R1′ is independently selected from an aliphatic group such as C1-10 branched or straight chain alkyl group, an aromatic group, such as C5-12 heteroaryl group or C6-12 aryl group, each optionally substituted with a group such as OR13, SR13, N(R13)2, CO2R13, CON(R13)2, SO2R12, SO3R12, phenyl, imidazolyl, indolyl, hydroxyphenyl or NR13C(═NR13)N(R13)2;
    wherein when Y is NR8, R8 and R1′ can together form a 4 to 7 membered ring, optionally substituted with a group such as CO2R13, OR13, SR13, N(R13)2, CO2R13, CON(R13)2, C1-10 alkyl or C6-12 aryl, wherein said ring can be fully, partially or unsaturated, and wherein the ring may contain one or more additional heteroatoms selected from O, S or N;
    R12 is hydrogen, C1-6 alkyl, C6-12 aryl or N(R13)2, wherein each occurrence of R13 is independently hydrogen, C1-6 alkyl or C6-12 aryl, and R4′ is a carboxyl protecting group or hydrogen;
    R9 and R10 are independently hydrogen or a group as defined for R1′;
    R11 is hydrogen or an amino protecting group preferably selected from a benzyloxycarbonyl group, a t-butoxycarbonyl group, a 2-(4-biphenylyl)-isopropoxycarbonyl group, a fluorenylmethoxycarbonyl group, a triphenylmethyl group and/or a 2-nitrophenylsulphenyl group;
    or R9 and R10 or R10 and R11 or R1′ and R10 or two R13 can together form a 4 to 7 membered ring, optionally substituted with a group such as CO2R13, OR13, SR13, N(R13)2, CO2R13, CON(R13)2, C1-10 alkyl or C6-12 aryl, wherein said ring can be fully, partially or unsaturated, and wherein the ring may contain one or more additional heteroatoms selected from O, S or N;
    Y is O, S or NR8, where R8 is as defined above;
  • or YR4′ is R3;
  • R5 is an aromatic group such as C6-12 aryl, C5-12 heteroalkyl or an aliphatic group such as C1-8 branched or straight chain alkyl optionally substituted with a group such as OR13, SR13N(R13)2, CO2R13, CON(R13)2, phenyl, imidazolyl, indolyl, hydroxyphenyl or NR13C(═NR13)N(R13), or a linker for attachment of formula (II) to a resin or a linked resin;
    n is 0, 1, 2 or 3 and m is an integer, such as an integer selected from 1-100.
  • The nucleophilic substitution of the acceptor molecule preferably occurs without epimerisation.
  • Preferably, the process is carboxy terminal extension of an acceptor molecule, for example an amino acid or peptide. The invention therefore provides a process for the synthesis of a peptide or a peptide analog by carboxy terminal extension, by the addition of a nucleophile to an acceptor molecule, such as a compound of formula (II).
  • There is further provided a process for the production of a compound of formula (1)
  • Figure US20120190816A9-20120726-C00004
  • comprising reaction of a compound of formula (II) or (II′) (above) with a compound of formula (III)

  • HY—R7  (III)
  • wherein the variables are defined as above;
    preferably X is O, S, or NR8, where R8 is as defined above; Y is O, S or NH;
    R2 is independently selected from a C1-10 branched or straight chain alkyl group, C5-12 heteroaryl group or C6-12 aryl group, optionally substituted with OR13, SR13, N(R13)2, CO2R13, CON(R13)2, SO2R12, SO3R12, phenyl, imidazolyl, indolyl, hydroxyphenyl or NR13C(═NR13)N(R13)2;
    R3 is as defined for R2 or is hydrogen, or a group
  • Figure US20120190816A9-20120726-C00005
  • or a group —C(R1′)(R9)—N(R10)(R11);
    wherein R is hydrogen or as defined from R1 below; Y is as defined above and R4 is as defined for R4 below;
    R12 is hydrogen, C1-6 alkyl, C6-12 aryl or N(R13)2, wherein each occurrence of
    R13 is independently hydrogen, C1-6 alkyl or C6-12 aryl,
    R9 and R10 are independently hydrogen or a group as defined for R1′:
    or R9 and R10 can together form a 4 to 7 membered ring, optionally substituted with CO2R13, OR13, SR13, N(R13)2, CO2R13, CON(R13)2, C1-10 alkyl or C6-12 aryl, wherein said ring can be fully, partially or unsaturated, and wherein the ring may contain one or more additional heteroatoms selected from O, S or N,
    R11 is hydrogen or an amino protecting group preferably selected from a benzyloxycarbonyl group, a t-butoxycarbonyl group, a 2-(4-biphenylyl)-isopropoxycarbonyl group, a fluorenylmethoxycarbonyl group, a triphenylmethyl group and/or a 2-nitrophenylsulphenyl group;
    R5 is an aromatic group, such as C5-12 aryl, C5-12 heteroalkyl or an aliphatic group, such as C1-8 branched or straight chain alkyl optionally substituted with OR13, SR13, N(R13)2, CO2R13, CO N(R13)2, phenyl, imidazolyl, indolyl, hydroxyphenyl or NR13C(═NR13)N(R13)2 or a linker for attachment of formula (II) to a resin or a linked resin; R6 is hydrogen or
  • Figure US20120190816A9-20120726-C00006
  • wherein R5 and X are as defined above;
    R7 is a chiral, substituted methylene, such as a group
  • Figure US20120190816A9-20120726-C00007
  • or is independently selected from an aliphatic group such as a C1-10 branched or straight chain alkyl group or an aromatic group, such as a C6-12 aryl group, optionally substituted with OR13, SR13, N(R13)2, CO2R13, CON(R13)2, SO2R12, SO3R12, phenyl, imidazolyl, indolyl, hydroxyphenyl or NR13C(═NR13)N(R13)2,
    or wherein R7 and Y together form a 4 to 7 membered ring, optionally substituted with a group such as OR13, SR13, N(R13)2, CO2R13, CON(R13)2, SO2R12, SO3R12, phenyl, imidazolyl, indolyl, hydroxyphenyl or NR13C(═NR13)N(R13)2, wherein said ring can be fully, partially or unsaturated, and wherein the ring may contain one or more heteroatoms in addition to Y, selected from O, S or N;
    wherein R1 is R1′ or is independently selected from an aliphatic group such as C1-10 branched or straight chain alkyl group, or an aromatic group such as C5-12 heteroaryl group or C6-12 aryl group optionally substituted with a group such as OR13, SR13, N(R13)2, CO2R13, CON(R13)2, SO2R12, SO3R12, phenyl, imidazolyl, indolyl, hydroxyphenyl or NR13C(═NR13)N(R13)2,
    and R4 is R4′ or a carboxyl protecting group or hydrogen; n is 0, 1, 2 or 3 and m is an integer such as a value selected from 1-100 and when n=0, R6 is H.
  • The inventors have surprisingly found that activation of an amino acid or peptide via a cyclic compound as exemplified in formula (II) prevents the formation of an oxazolone thereby allowing the condensation of a compound of formula (III) without concommitant epimerisation. The invention therefore provides peptides via C-terminus extension, said peptides being produced in an enantiomerically and diastereochemically pure form.
  • The use of activated cyclic N-acyl amino acids, peptides or derivatives thereof eliminates oxazolone formation and associated epimerisation. The use of cyclic activated intermediates in the present invention provides an improved method of peptide synthesis via carboxy-terminal extension.
  • Therefore, rather than merely reducing the probability of epimerisation occurring, as has been attempted in the prior art, the process of the present invention does not permit epimerisation and therefore guarantees the production of a peptide of correct stereochemistry as the activated carboxyl terminus is held in a cyclic template such that the adjacent amide cannot form the oxazolone.
  • In accordance with usual practice, * denotes a stereocenter (asymmetric center). Where a compound contains a stereocenter (whether marked in the present application with * or not) the stereochemistry of the asymmetric centers may be in the R or S configuration. The compounds of the present application can be provided in enantiomerically pure form or as a mixture of isomers (including a racemic mixture). Preferably, the compounds of the present inventions are provided in an enantiomerically pure form. The present invention allows maintenance of the desired stereochemistry throughout the synthetic pathway. Thus wherein Y is NH, the amino acids to be attached may be of U or D configuration as required.
  • Preferably R1 and R2 are independently selected from C1-4 branched or straight chain alkyl optionally substituted with OR13, SR13, N(R13)2, CO2R13, CON(R13)2, phenyl, imidazolyl, indolyl, hydroxyphenyl or NR13C(═NR13)N(R13)2, preferably optionally substituted with OH, SH, NH2, CO2H, CONH2, phenyl, imidazolyl, indolyl, hydroxyphenyl or NH(C═NH)NH2.
  • More preferably, R and R are independently selected from C1 alkyl optionally substituted with OH, SH, CO2H, CONH2, phenyl, imidazolyl, indolyl or hydroxyphenyl; C2 alkyl optionally substituted with OH, CO2H, CONH2 or SCH3; C3 alkyl optionally substituted with NHC(═NH)NH2 or C4 alkyl optionally substituted with NH2.
  • The integer, m is preferably 1-50, more preferably 1 to 30, most preferably 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 or 20. The integer n is preferably 0 or 1.
  • When X is NR, R is preferably Ci-4 alkyl, more preferably methyl, ethyl, n-propyl, iso-propyl, n-butyl or tert-butyl, phenyl, naphthyl, anthracenyl or phenanthracenyl, more preferably phenyl or hydrogen.
  • R3 may also be substituted pipecolic acid or derivative thereof, α-alkoxy-α-amino acids, cc, α-diamino acids, β-substituted dehydroamino acids, canavanine, cysteinesulphonamide, homocysteinesulphonamide, γ,δ-unsaturated amino acids. substituted 4-hydroxyprolines, 4-hydroxtyornithines, imino sugars, Fmoc -BPC—OH, Fmoc-TPG-OH and Fmoc-CAA-OH, or (5)-3,5-dihydroxyphenylglycine.
  • It will be appreciated by a person skilled in the art that amino acids, hydroxy acids and derivatives thereof contain functional groups which require protection. In particular it is known in the art to protect the amino terminus, the carboxyl terminus and/or the side chains of an amino acid or peptide (for example wherein R1 or R2 is C2CO2H or CH2CH2OH). Examples of such protection are well known in the art. In particular the amino terminus of an amino acid may be protected by one or more of a benzyloxycarbonyl group, a t-butoxycarbonyl group, a 2-(4-biphenylyl)-isopropoxycarbonyl group, a fluorenylmethoxycarbonyl group, a triphenylmethyl group and/or a 2-nitrophenylsulphenyl group. The carboxyl group can be protected by one or more of an ester group especially a methyl, ethyl, benzyl, t-butyl or phenyl ester. Thus R4 is preferably methyl, ethyl, benzyl, t-butyl or phenyl.
  • Conditions for the removal of the protecting groups discussed above are well known in the art. The protecting groups may be removed after each coupling reaction (for example, the carboxyl protection) or alternatively at the end of the synthesis (for example, the side chain protection and/or the N-terminal group).
  • In a particular feature of the first aspect, the invention provides a process for production of a compound of formula (Ia)
  • Figure US20120190816A9-20120726-C00008
  • comprising reacting a compound of formula (IIa) (above)
    with a compound of formula (III) HY—R7:
    Wherein the groups Y, X, R2, R3, R5, and R7 are as defined above.
  • In an alternative feature of the first aspect, the invention provides a process for production of a compound of formula (Ib)
  • Figure US20120190816A9-20120726-C00009
  • comprising reacting a compound of formula (IIb)
  • Figure US20120190816A9-20120726-C00010
  • with a compound of formula (III) HY—R7
    wherein the groups Y, X, R2, R3, R5 and R7 are as defined above for compounds (I), (II) and (III).
  • The N and the terminal ester of formula (I), (Ia) or (Ib) can be unmasked by processes known in the art. for example, sodium liquid ammonia in the presence of an alcohol when R1=phenyl and R4=t-butyl. Alternatively, the ester can be further derivatized, including for example, amidation.
  • The nucleophilic substitution of the acceptor molecule of the first aspect of the invention can be carried out using reaction conditions known in the art. In some circumstances, for example where the nucleophile and/or the acceptor molecule are sterically hindered it may be necessary for example to use high pressure such as around 19-20 bar, and/or longer reaction times such as 12-72 hours, preferably 24-48 hours. Alternatively, the reaction can be carried out in the presence of a reagent such as AlMe3. When the substitution is carried out on the solid phase, the reaction can be promoted by the use of an excess of nucleophile.
  • The invention further relates to a process for the production of a compound of formula (II) (above) by the reaction of a compound of formula (IV)
  • Figure US20120190816A9-20120726-C00011
  • with a compound of formula (V) Z—CO—R3
    wherein Z is any substituent capable of being involved in peptide bond formation preferably hydroxide, halide or azide, and R2, R3, R5, X and n are as defined above. It will be appreciated that when R3 is a protected peptide, subsequent N-terminus extension may be carried out using peptide synthesis methods known in the art, such as deprotection and further peptide bond formation.
  • The process of the present invention can particularly be used for the production of cyclic compounds, for example cyclic peptides.
  • It will be appreciated that when R3 is C(R1′)(R9)—N(R10)(R11), the compound of formula (II) can be reacted with one or more compounds of formula (V) in a stepwise direction.
  • The present invention therefore encompasses a compound of formula (VII);
  • Figure US20120190816A9-20120726-C00012
  • wherein the variables are described above, preferably m is an integer of 1 to 50, preferably 1 to 30, more preferably 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17. 18, 19 or 20; and R1′, R2, R5, R9, R10, R11, X and n are as defined above.
  • The compound of formula (VII) can be used in a process for the formation of a compound of formula (I) (illustrated below as (Ic));
  • Figure US20120190816A9-20120726-C00013
  • when R14 is —[C(O)—C(R9)(R1′)—N(R10)—]m—(R11) and R1′, R2, R6, R7, R9, R10, R11, m, X and Y are as described above, comprising reaction of a compound of formula (VII) with a compound of formula (III) as described above. The compound of formula (I) can then be converted into a compound of formula (VI) by removal of the group R6 as described below. For the compound of formula (VII) and compounds of formula (I) or (VI) obtained therefrom, the substituents R1 and R9 can be replaced by a group (═R1) wherein R1 is as described above.
  • It will be appreciated that when m is 3 or more, and R10 and R11 are hydrogen, condensation can occur at the X—C(O)— functionality of the compound of formula (VII) to form a cyclised compound of formula (VIII);
  • Figure US20120190816A9-20120726-C00014
  • wherein the variables are as defined above.
  • The present invention therefore provides a compound of formula (VIII). In addition, the invention provides a process for the production of a compound of formula (VIII) comprising cyclisation of a compound of formula (VII) wherein m is 3 or more. Reaction of the compound of formula (VIII) under reducing conditions (for example in the presence of lithium and liquid ammonia) results in the formation of a compound of formula (IX);
  • Figure US20120190816A9-20120726-C00015
  • wherein R1′, R2, R9, X and m are as defined above.
  • The present invention therefore provides a compound of formula (IX) and a process for the production of a compound of formula (IX) comprising the reduction of a compound of formula (VIII).
  • It will be appreciated that the process of the present invention can be carried out in solution. Alternatively, a compound of formula II may be attached to a resin via the group R5 and the peptide synthesis carried out via solid phase peptide synthesis. When R5 is a linker it can be a group OR13, N(R13)2, CO2R13 or Se, or an alkyl group having 1 to 4 carbons or a C6-12 aryl group, said alkyl and aryl groups being optionally substituted with OR13, N(R13)2, CO2R13 or SR13. Alternatively, part of the synthesis may be carried out on the solid phase and part in solution.
  • The compound of formula II can be attached to and removed from a resin using methods known in the art.
  • Solid phase peptide synthesis using the process of the present invention may be carried out by using procedures attaching the carboxy-terminal to any resin known in the art. Examples of suitable resins include Wang, Merrifield, polyimide, 2-chlorotrityl, Rink, Knorr, DCHD, PAL and any other known in the art. Solid phase coupling partners such as BOP, PyBOP and DCC may be used, as well as any other suitable coupling partners known in the art.
  • A further feature of the first aspect is a process for the production of a compound of formula (VI)
  • Figure US20120190816A9-20120726-C00016
  • from formula (I)
  • Figure US20120190816A9-20120726-C00017
  • by the removal of R6 by any method known in the art, wherein X, Y, R2, R3, R6 and R7 are as defined above. It will be appreciated that when R6 is hydrogen, the compound of formula (I) corresponds to the compound of formula (VI).
  • In particular, the removal of the group R6 may be carried out under reducing conditions such as under Birch conditions (i.e. with lithium and liquid ammonia). As it will be appreciated by the skilled person, the peptide produced by the process of the first aspect may be post modified by any suitable method known in the art. A second aspect of the present invention relates to the compounds described herein, including a compound of formula (II)
  • Figure US20120190816A9-20120726-C00018
  • wherein X is O, S or NR8, where R8 is C1-6 alkyl, C6-12 aryl or hydrogen R2 is independently selected from a C1-10 branched or straight chain alkyl group, C5-12 heteroaryl group or C6-12 aryl group, optionally substituted with OR13, SR13, N(R13)2, CO2R13, CON(R13)2, SO2R12, SO3R12, phenyl, imidazolyl, indolyl, hydroxyphenyl or NR13C(═NR13)N(R13)2; R3 is as defined for R2 or is hydrogen, or a group
  • Figure US20120190816A9-20120726-C00019
  • or a group —C(R1′)(R9)—N(R10)(R11) wherein R1 is independently selected from a C1-10 branched or straight chain alkyl group, C5-12 heteroaryl group or C6-12 aryl group optionally substituted with OR13, SR13, N(R13)2, CO2R13, CON(R13)2, SO2R12, SO3R12, phenyl, imidazolyl, indolyl, hydroxyphenyl or NR13C(═NR13)N(R13)2 wherein when Y is NR8, R8 and R1′ can together form a 4 to 7 membered ring, optionally substituted with CO2R13, OR13, SR13, N(R13)2, CO2R13, CON(R13)2, C1-10 alkyl or C6-12 aryl, wherein said ring can be fully, partially or unsaturated,
    and wherein the ring may contain one or more heteroatoms selected from O, S or N;
    R12 is hydrogen, C1-6 alkyl, C6-12 aryl or N(R13)2, wherein each occurrence of R13 is independently hydrogen, C1-6 alkyl or C6-12 aryl, R9 and R10 are independently hydrogen or a group as defined for R1; or R9 and R10 can together form a 4 to 7 membered ring, optionally substituted with CO2R13, OR13, SR13, N(R13)2, CO2R13, CON(R13)2, C1-10 alkyl or C6-12 aryl, wherein said ring can be fully, partially or unsaturated, and wherein the ring may contain one or more heteroatoms selected from O, S or NR11 is hydrogen or an amino protecting group preferably selected from a benzyloxycarbonyl group, a t-butoxycarbonyl group, a 2-(4-biphenylyl)-isopropoxycarbonyl group, a fluorenylmethoxycarbonyl group, a triphenylmethyl group and/or a 2-nitrophenylsulphenyl group; R1 is independently selected from C1-10 branched or straight chain alkyl optionally substituted with OR13, SR13, N(R13)2, CO2R13, CO N(R13)2, phenyl, imidazoyl, indolyl, hydroxyphenyl or NR13C(═NR13)N(R13)2 and R4′ is a carboxyl protecting group or hydrogen and n is 0, 1, 2 or 3, m is 1-100; and R5 is a linker for attachment of formula (II) to a resin, a linked resin, or C6-12 aryl, C5-12 heteroalkyl or C1-8 branched or straight chain alkyl optionally substituted with OR13, SR13, N(R13)2, CO2R13, CON(R13)2, phenyl, imidazolyl, indolyl, hydroxyphenyl or NR13C(═NR13)N(R13)2; wherein when X═O, and R5 is phenyl, n is not 0 or 1.
  • Preferably R1 and R2 are independently selected from C1-4 branched or straight chain alkyl optionally substituted with OR13, SR13, N(R13)2, CON(R13)2, phenyl, imidazolyl, indolyl, hydroxyphenyl or NR13C(═NR13)N(R13)2. More preferably R1 and R2 are independently selected from C1 alkyl optionally substituted with OR13, SR13, CO2R13, CO N(R13)2, phenyl, imidazolyl, indolyl or hydroxyphenyl; C2 alkyl optionally substituted with OR13, CO2R13, CON(R13)2 or SCH3; C3 alkyl NR13C(═NR13)N(R13)2 or C4 alkyl optionally substituted with N(R13)2.
  • As set out above, R4 is a carboxyl protecting group, such as an ester group. In particular R4 is preferably methyl, ethyl, benzyl, t-butyl or phenyl. When R5 is a linker it can be OR13, N(R13)2. CO2R13 or SR13 or an alkyl group having 1 to 4 carbons or a C6-12 aryl group, wherein the alkyl group and/or aryl group can be substituted with one or more of OR13, N(R13)2, CO2R13 or SR13.
  • The integer, m is preferably 1-50, more preferably 1 to 30, most preferably 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 or 20. The integer n is preferably 0 or 1.
  • When X is NR8, R8 is preferably C1-4 alkyl, more preferably methyl, ethyl, n-propyl, iso-propyl, n-butyl or tert-butyl, phenyl, naphthyl, anthracenyl or phenanthracenyl, more preferably phenyl or hydrogen.
  • R13 is preferably hydrogen or C1-4 alkyl, more preferably methyl, ethyl, n-propyl, iso-propyl, n-butyl or tert-butyl.
  • For the purposes of this invention, alkyl relates to both straight chain and branched, saturated or unsaturated alkyl radicals having, for example, 1 to 10 carbon atoms, preferably 1 to 8 carbon atoms and most preferably 1 to 4 carbon atoms including but not limited to methyl, ethyl, n-propyl, isopropyl, n-butyl, sec-butyl, isobutyl, tert-butyl n-pentyl, n-hexyl, n-heptyl, n-octyl. Alkyl therefore relates to a group having 1, 2, 3, 4, 5, 6, 7, 8, 9 or 10 or more carbon atoms. The term alkyl also encompasses cycloalkyl radicals of 3 to 12 carbon atoms, preferably 4 to 8 carbon atoms, and most preferably 5 to 6 carbon atoms including but not limited to cyclopropyl, cyclobutyl, CH2-cyclopropyl, CH2-cyclobutyl, cyclopentyl or cyclohexyl. Cycloalkyl groups may be optionally substituted or fused to one or more carbocyclyl or heterocyclyl group. Haloalkyl relates to an alkyl radical preferably having 1 to 8 carbon atoms, preferably 1 to 4 carbon atoms substituted with one or more halide atoms for example CH2CH2Br, CF3 or CCl3. An alkyl group may be optionally interrupted by one or more O, S or NH groups, preferably one or more O atoms to form an alkoxy group. An alkyl group may be optionally interrupted by one or more double or triple bonds to form a group including but not limited to ethylene, n-propyl-1-ene, n-propyl-2-ene, isopropylene, ethynyl, 2-methylethynyl etc.
  • “Aryl” means an aromatic 6 to 12 membered hydrocarbon or heteroaryl containing one ring or being fused to one or more saturated or unsaturated rings including but not limited to phenyl, naphthyl, anthracenyl or phenanthracenyl. “Heteroaryl” means an aromatic 5 to 12 membered aryl containing one or more heteroatoms selected from N, O or S and containing one ring or being fused to one or more saturated or unsaturated rings including but not limited to furan, imidazole, indole, oxazole, purine, pyran, pyridine, pyrimidine, pyrrole, tetrahydrofuran, thiophene and triazole. The aryl and heteroaryl groups can be fully saturated, partially saturated or unsaturated.
  • Halogen means F, CI, Br or I, preferably F.
  • A third aspect of the invention relates to the use of a compound of formula (II) as defined in the first and/or second aspects of the invention in asymmetric synthesis.
  • All preferred features of each of the aspects of the invention apply to all other aspects mutatis mutandis.
  • The present invention will now be illustrated by reference to one or more of the following non-limiting examples:
  • EXAMPLES
  • Example of a method for the production of a cyclic peptide.
  • Figure US20120190816A9-20120726-C00020
  • Example of a method for N-terminal extension of a compound of formula (II).
  • Figure US20120190816A9-20120726-C00021
  • Example of a method for use of the compound of formula (II) in solid phase synthesis
  • Figure US20120190816A9-20120726-C00022
  • Example of a method to produce a thiomorpholinone template of formula (II)
  • Figure US20120190816A9-20120726-C00023
  • Examples of peptide synthesis (5R)-3-Methyl-5-ρhenyl-5,6-dihydro-2H-1,4-oxazin-2-one
  • Figure US20120190816A9-20120726-C00024
  • (R)-2-phenylglycinol (3.00 g, 21.9 mmol, 1.0 equiv.) and ethyl pyruvate (2.67 mL, 24.1 mmol, 1.1 equiv.) were refluxed in tritluoroethanol (50 mL) over activated 4 molecular sieves (8.00 g) for 24 hours. Filtration through a short pad of Celite® and removed of solvent from the filtrate in vacuo generated the crude product which was purified by flash column chromatography on silica, eluting with petrol and diethyl ether (7:3) to furnish the title compound as a white solid (1.70 g, 41%); mp 71.0-72.0° C. (lit 71.0-72.0° C.); v(max) (KBr) 3001 (C—H), 1734 (C═O), 1642 (C═N) cm″1; δH (250 MHz, CDCl3) 7.42-7.32 (5H, m, Ph), 4.89-4.80 (1H, m, PhCH), 4.56 (1H, dd, /4.49 Hz, T 11.55 Hz, 6β-H), 4.25 (1H, dd J 10.97 Hz, r 11.51 Hz, 6α-H), 2.40 (3H, S, CH3); δc (62.5 MHz, CDCl3) 160.7, 155.9, 137.2, 129.4, 128.7, 127.5, 71.9, 60.1, 22.2; mIz (CL, NH3), 189 (M+, 25%), 159 (12%), 130 (24%), 104 (100%), 90 (21%), and 78 (6%); HRMS for C11H11NO2 requires 189.0787 found 189.0782. [α]D 20−256.0 (c 1.11 CHCl3) (lit. [α]D 20−237.1 (c 1.11 CHCl3)).
  • (3S,5R)-3-Methyl-5-phenyl-3,4,5,6-tetrahydro-2H-1,4-oxazin-2-one
  • Figure US20120190816A9-20120726-C00025
  • To a solution of (5R)-3-methyl-5-phenyl-5,6-dihydro-2H-1,4-oxazin-2-one (1.70 g, 9.0 mmol, 1.0 equiv.) in anhydrous dichloromethane (60 mL) under an atmosphere of nitrogen was added PtO2 (170 mg, 0.1 equiv.). The mixture was consecutively degassed and purged three times with hydrogen and then stirred for 5 hours under an atmosphere of hydrogen. Filtration through a short pad of Celite® and removal of solvent from the filtrate in vacuo yield the crude product which was purified by recrystallisation dichloromethane diethyl diethyl ether and hexane to furnish the title compound as a white needles (1.37 g, 80%); m.p. 82.0-83.0° C. (lit. m.p. 81.0-82.0° C.); v(max) (KBr) 3314 (N—H), 2981 (C—H), 1739 (C═O), cm″1; δH (250 MHz, CDCl3) 7.44-7.33 (5H, m, Ph),; 4.42-4.23 (3H, m, CHCH2), 3.88 (1H, q, /6.76 Hz, CHCH3), 1.86 (1H, br, NH), 1.50 (3H, d, J 16.16 Hz, CH3); δc (62.5 MHz, CDCl3) 170.7, 138.0, 129.3, 127.5, 127.2, 75.4, 58.2, 55.4, 19.0; mIz (CL, NH3), 191 (M+, 7%), 147 (20%), 131 (65%), 104 (100%), 91 (20%), and 77 (12%); FIRMS for C11H13NO2 requires 191.0943 found 191.0940. [α]D 20−92.9 (c 1.02 CHCl3) (lit. for the enantiomer [α]D 20+92.3 (c 0.84 CHCl3)).
  • (3S,5R)-4-N-Acetyl-3-methyl-5-ρhenyl-3,4,5,6,-tetrahydro-2H-1,4-oxazin-2-one
  • Figure US20120190816A9-20120726-C00026
  • To a vigorously stirred mixture of (3S,5R)-3-methyl-5-phenyl-3,4,5,6-tetrahydro-2H-1,4-oxazin-2-one (300 mg, 1.56 mmol), Na2CO3 (500 mg, 4.68 mmol, 3.0 equiv.) in anhydrous dichloromethane (30 mL) was added acetyl chloride (0.17 mL, 2.34 mmol, 1.5 equiv.) dropwise over 1 min. The resulting solution was stirred for 15 minutes under an atmosphere of nitrogen. The reaction was quenched by the addition of saturated Na2CO3 (20 mL), the aqueous phase was extracted with diethyl diethyl ether (3×10 mL) and the combined extracts were dried over MgSO4. The solvents were removed in vacuo and the crude material was purified by flash column chromatography on silica, eluting with diethyl ether and dichloromethane (9:1) to furnish the title compound as fine colourless needles (270 mg, 74%); m.p. 82-85° C.; V(max) (KBr) 2943 (C—H), 1733 (C═O, lactone), 1647 (C═O, amide) cm″1; δH (250 MHz, DMSO-d) 7.42-7.36 (5H, m, Ph), 5.49 (0.4H, PhCH×0.4) 5.33 (0.6H, PhCH×0.6), 5.08-5.05 (1H, m, CH3CH), 4.65 (2H, d, J=6.10 Hz, CH2); 2.13 (1H, s, CH3CON×1), 1.86 (2H, s, CH3CON×2), 1.39 (3H, d, J=12.40 Hz CH3CH); δc (62.5 MHz, DMSO—O 170.5, 169.8, 137.8, 129.4, 128.4, 127.1, 68.6, 55.5, 50.7, 49.7, 22.7, 19.0; mIτ (CL, NH3), 234 (MH+, 8%), 233 (M, 13%), 220 (4%), and 219 (100%); HRMS for C13H16NO3 requires 234.1126. found 234.1130; [α]D 20−29.8 (c 1.16 CHCl3).
  • N-Fmoc-L-alanine Acid Chloride
  • Figure US20120190816A9-20120726-C00027
  • To a solution of N-Fmoc-L-alanine (2.00 g, 6.4 mmol, 1.0 equiv.) in anhydrous dichloromethane (40 mL) was added thionyl dichloride (4.70 mL, 64 mmol, 10 equiv.). The resulting mixture was refluxed for 2 hours under an atmosphere of nitrogen. The solvent and excess of thionyl chloride were removed in vacuo and the crude N-Fmoc-L-alanine acid chloride was partially purified by recrystallization from dichloromethane and hexane (1.74 g, 86%); m.p. 88-90° C. (lit. m.p. 112-114° C.); v(max) (KBr) 3328 (N—H). 3040 (C—H), 1778 (C═O, chloride), 1694 (C═O,carbamate), cm1; δH (250 MHz. CDCl3) 7.79-7.29 (8H, m. Fmoc). 5.22 (1H, d. J 8.0 Hz, NH), 4.67-4.38 (3H, m, CH3CH×1, CHCH2×2), 4.23 (1H, t, /6.52 Hz, CHCH2); 1.55 (3H, d, J=7.28 Hz, CH3CH); 8, (62.5 MHz, CDCl3) 176.8, 158.2, 143.9, 141.7, 128.2, 127.5, 125.3, 120.5, 67.7, 59.1, 47.5, 17.7; mIz (CL, NH3), 330 (MH+, 48%), 258 (20%), 197 (65%), 154 (100%), 95 (20%), and 72 (12%); HRMS for C18H17ClNO3 requires 330.1595 found 330.1592. [α]D 20+8.50 (c 1.30 CHCl3) (lit. [α]D 24+4.03 (c 1.00 CH2Cl2)).
  • (3S,5R)—N—[N-Fmoc-(S)alanyl]-3-methyl-5-phenyl-3,4,5,6,-tetrahydro-2H-1,4-oxazin-2-one
  • Figure US20120190816A9-20120726-C00028
  • To a vigorously stirred mixture of (3S,5R)-3-methyl-5-phenyl-3,4,5,6-tetrahydro-2H-1,4-oxazin-2-one (600 mg, 3.14 mmol), Na2CO3 (1.70 g. 15.70 mmol, 5.0 equiv.) in 1:1 dichloromethane and water (40 mL) was added N-Fmoc-L-alanine acid chloride (1.26 g, 3.84 mmol, 1.2 equiv.) in dichloromethane (10 mL) dropwise over 5 min. The resulting solution was stirred for 2 hours. The aqueous phase was extracted with dichloromethane (3×15 mL). The combined extracts were washed with saturated Na2CO3 (50 mL), water (2×30 mL), brine (50 mL) and dried over MgSO4. The solvents were removed in vacuo and the crude material was purified by flash column chromatography on silica, eluting with petrol and diethyl ether (1:4) to furnish the title compound as fine colorless needles (1.21 g, 80%); m.p. 89-90° C.; V(max) (KBr) 3321 (N—H)5 2983 (C—H), 1741 (C═O, lactone), 1718 (C═O, carbamate), 1654 (C═O, amide) cm″1; δH (250 MHz, DMSO-d) 7.91-7.27 (13H, m, Fmoc×8, Ph×5), 5.50 (1H, br, NH), 5.07 (1H, m, PhCH), 4.90 (1H, m, NCHCH3); 4.77 (1H, d, 77.0 Hz, Cc-PhCHCH2), 4.57 (2H, m, CHCH3NH×1, β-PhCHCH2×1), 4.26 (1H, m, OCH2CH), 4.19 (2H, m, OCH2CH), 1.28 (3H, d, /4.O Hz5 NCHCH3), 1.10 (3H, d, /4.0 Hz, CHCH3NH); δc (62.5 MHz, DMSO-d) 172.0, 170.0, 156.1, 144.2, 141.1, 136.2, 128.9, 128.3, 127.9, 127.4, 126.7, 125.7, 120.4, 66.0, 65.3, 53.0, 50.7, 47.8, 46.9, 18.6, 17.8; (Cl, NH3), 508 (MNa+, 6%), 502 (MNH4 +, 45%), 487 (4%), and 485 (MH+, 100%); HRMS for C29H29N2O5 requires 485.2069. found 485.2060; [α]D 20−13.1 (c1.06 CHCl3).
  • (5S)-3-Methyl-5-phenyl-5,6-dihydro-2H-1,4-oxazin-2-one
  • Figure US20120190816A9-20120726-C00029
  • (S)-2-phenylglycinol (3.00 g, 21.9 mmol, 1.0 equiv.) and ethyl pyruvate (2.67 mL, 24.1 mmol, 1.1 equiv.) were refluxed in trifluoroethanol (50 mL) over activated 4 molecular sieves (8.00 g) for 24 hours. Filtration through a short pad of Celite® and removal of solvent from the filtrate in vacuo generated the crude product which was purified by flash column chromatography on silica, eluting with petrol and diethyl ether (7:3) to furnish the title compound as a white solid (1.83 g, 44%); m.p. 70.0-71.0° C. (lit 71.0-72.0° C.); v(max) (KBr) 3007 (C—H), 1735 (C═O), 1640 (C═N) cm″1; δH(250 MHz, CDCl3) 7.45-7.32 (5H, m, Ph), 4.88-4.81 (1H, m, PhCH), 4.56 (1H, dd, J=4.49 Hz, T 9.48 Hz, 6β-H), 4.25 (1H, dd/13.01 Hz, JT 14.99 Hz, 6α-H), 2.41 (3H, s, CH3); δc (62.5 MHz, CDCl3) 160.7, 155.9, 137.2, 129.4, 128.7, 127.5, 71.9, 60.1, 22.2; % (CL, NH3), 189 (M+, 25%), 159 (12%), 130 (24%), 104 (100%), 90 (21%), ! and 78 (6%); HRMS for C11HnNO2 requires 189.0787 found 189.0782. [α]D 20 253.0 (c 0.98 CHCl3) (the enantiomer lit. [α]D 20−237.1 (c 1.11 CHCl3)).
  • (3R,5S)-3-Methyl-5-phenyl-3,4,5,6-tetrahydro-2H-1,4-oxazin-2-one
  • Figure US20120190816A9-20120726-C00030
  • To a solution of (5S)-3-methyl-5-phenyl-5,6-dihydro-2H-1,4-oxazin-2-one (1.70 g, 9.0 mmol, 1.0 equiv.) in anhydrous dichloromethane (60 mL) under an atmosphere of nitrogen was added PtO2 (170 mg, 0.1 equiv.). The mixture was consecutively degassed and purged three times with hydrogen and then stirred for 5 hours under an atmosphere of hydrogen. Filtration through a short pad of Celite® and removal of solvent from the filtrate in vacuo yielded the crude product which was purified by recrystallization dichloromethane. diethyl diethyl ether and hexane to furnish the title compound as a white needles (1.26 g, 74%); m.p. 81.0-82.0° C. (lit. m.p. 81.0-82.0° C.); v(max) (KBr) 3314 (N—H), 2981 (C—H), 1736 (C═O), cm″1; δH (250 MHz, CDCl3) 7.43-7.26 (5H, m, Ph),; 4.42-4.23 (3H, m, CHCH2), 3.88 (1H, q, /6.76 Hz, CHCH3). 1.80 (1H, br, NH), 1.50 (3H, d, J 6.76 Hz, CH3); δc (62.5 MHz, CDCl3) 170.7, 138.1, 129.3, 129.1, 127.5, 75.4, 58.2, 55.4, 19.0; mIz (CL, NH3), 192 (MH+, 30%). 147 (68%), 132 (64%), 104 (100%), and 91 (10%); HRMS for C11H13NO2 requires 192.1025 found 192.1019. [α]D 20+88.8 (c 0.96 CHCl3) (lit. [α]D 20+92.3 (c 0.84 CHCl3)).
  • (3R,5S)—N—[N-Fmoc(S)alanyl]-3-methyl-5-phenyl-3,4,5,6tetrahydro-2H-1,4 oxazin-2-one
  • Figure US20120190816A9-20120726-C00031
  • To a vigorously stirred mixture of (3R,5S)-3-methyl-5-phenyl-3,4,5,6-tetrahydro-2H-1,4-oxazin-2-one (500 mg, 2.62 mmol), Na2CO3 (1.40 g, 13.3 mmol, 5.0 equiv.) in 1:1 dichloromethane and water (40 mL) was added N-Fmoc-L-alanine acid chloride (1.04 g, 3.14 mmol. 1.2 equiv.) in dichloromethane (10 mL) dropwise over 5 min. The resulting solution was stirred for 2 hours. The aqueous phase was extracted with dichloromethane (3×15 mL). The combined extracts were washed with saturated Na2CO3 (50 mL), water (2×30 mL brine (50 mL) and dried over MgSO4. The solvents were removed in vacuo and the crude material was purified by flash column chromatography on silica, eluting with petrol and diethyl ether (1:4) to furnish the title compound as fine colourless needles (1.02 g, 80%); m.p. 87-88° C.; v(max) (KBr) 3323 (N—H), 2982 (C—H), 1761 (C═O, lactone), 1717 (C═O, carbamate), 1656 (C═O, amide) cm″1; δH (400 MHz, DMSO-d, 110° C.) 7.84-7.29 (13H, m, Fmoc×8, Ph×5), 7.08 (1H, br, NH), 5.54 (1H, t, /5.88 Hz, PhCH), 4.96 (1H, q, /7.11 Hz, NCHCH3); 4.68-4.60 (2H, m, PhCHCH2), 4.41-4.32 (3H, m, CHCH3NH×1, OCH2CH×2), 4.22 (1H, t, /6.72 Hz OCH2CH), 1.45 (3H, d, /7.15 Hz, NCHCH3), 1.08 (3H, d, /6.71 Hz, CHCH3NH); 6, (62.5 MHz, OMSO-d) 174.0, 172.8, 170.4, 169.6, 156.3, 144.1, 141.1, 137.7, 129.4, 128.7, 128.0, 127.4, 127.3, 127.1, 125.6, 120.5, 68.8, 66.0, 55.5, 55.3, 52.2, 51.4, 50.0, 47.2, 20.5, 18.6, 17.7, 17.1; mIz (C.I. NH3), 485 (MH+, 12%), 431 (8%), 381 (7%), 281 (15%) and 149 (100%); HRMS for C29H29N2O5 requires 485.2069. found 485.2076; [α]D 20+22.2 (c 0.94 CHCl3).
  • (5R)-3-Isopropyl-5-phenyl-5,6-dihydro-2H-1,4-oxazin-2-one
  • Figure US20120190816A9-20120726-C00032
  • (R)-2-phenylglycinol (4) (2.00 g, 14.6 mmol, 1.0 equiv.) and ethyl 3-methyl-2-oxobtayrate (2.20 mL, 14.6 mmol, 1.0 equiv.) were refluxed in trifluoroethanol (30 mL) over activated 4 molecular sieves (7.0 g) for 24 hours. Filtration through a short pad of Celite® and removal of solvent from the filtrate in vacuo generated the crude product which was purified by flash column chromatography on silica, eluting with petrol and diethyl ether (4:1) to furnish the title compound as colourless oil (1.13 g, 36%); v(max) (film) 2965 (C—H), 1740 (C═O), 1638 (C═N) cm″1; δH (250 MHz, CDCl3) 7.45-7.32 (5H, m, Ph), 4.90-4.83 (1H, m, PhCH), 4.55 (1H, dd, J=4.4 Hz, T 11.5 Hz, 6β-H), 4.13 (1H, dd/10.9 Hz, r 11.4 Hz, 6α-H), 3.32 (1H, m, CH(CH3)2), 1.25 (3H, d, J=5.0 Hz, CH(CH3)2×3), 1.22 (3H, d, /5.0 Hz, CH(CH3)2×3); δc (62.5 MHz, CDCl3) 167.7, 155.7, 137.5, 129.3, 128.6, 127.4, 71.7, 59.7, 32.7, 20.7, 19.9; % (CL, NH3). 220 (100%), 218 (MH+, 17%), 217 (27%), and 216 (25%); HRMS for C13H16NO2 requires 218.1177 found 218.1181. [α]D 20−207.5 (c 1.17 CHCl3).
  • (3S,5R)-3-Isopropyl-5-phenyl-3,4,5,6-tetrahydro-2H-1,4-oxazin-2-one (39)
  • Figure US20120190816A9-20120726-C00033
  • To a solution of (5R)-3-isopropyl-5-phenyl-5,6-dihydro-2H-1,4-oxazin-2-one (38) (1.03 g, 4.74 mmol, 1.0 equiv.) in anhydrous dichloromethane (50 mL) under an atmosphere of nitrogen was added PtO2 (103 mg, 0.1 equiv.). The mixture was consecutively degassed and purged three times with hydrogen and then stirred for 5 hours under an atmosphere of hydrogen. Filtration through a short pad of Celite® and removal of solvent from the filtrate in vacuo yielded the crude product which was purified by flash column chromatography on silica eluting with petrol and diethyl ether (4:1) to furnish the title product as a waxy solid (662 mg, 64%); m.p. 61.5-62.5° C.; v(max) (KBr) 3326 (N—H), 2960 (C—H), 1733 (C═O), cm″1; δH (250 MHz, CDCl3) 7.47-7.35 (5H, m, Ph),; 4.33-4.18 (3H, m, PhCHCH2), 3.81 (1H, m, NHCH), 2.49, (1H, m, CH(CH3)2), 1.68 (1H, br, NH), 1.09 (3H, dd, J=6.75 Hz, CH(CH3)2×3), 1.05 (3H, dd, J 6.75, CH(CH3)2×3); δc (62.5 MHz, CDCl3) 170.3, 138.5, 129.3, 129.1, 127.6, 74.9, 64.2, 57.3, 32.0, 19.4, 17.4; % (CL, NH3), 237 (MNH4 +, 5%), 220 (100%, MH+), 219 (22%), and 216 (6%); HRMS for Cl3H8NO2 requires 220.1333 found 220.1338. [α]D 20−92.1 (c 1.45 CHCl3).
  • (35,5R)—N—[N-Fmoc-(S)alanyl]-3-isopropyl-5-ρhenyl-3,4,5,6,-tetrahydro-2H-1,4-oxazin-2-one
  • Figure US20120190816A9-20120726-C00034
  • Method 1:
  • To a solution of (3S,5R)-3-isopropyl-5-phenyl-3,4,5,6-tetrahydro-2H-1,4-oxazin-2-one (150 mg, 0.68 mmol) in anhydrous dichloromethane (10 mL) was added N-Fmoc-L-alanine acid chloride (276 mg, 0.82 mmol, 1.2 equiv.) in anhydrous dichloromethane (5 mL). The resulting solution was stirred for 24 hours. The solvent was removed in vacuo and the crude material was purified by flash column chromatography on silica, eluting with petrol and diethyl ether (2:3) to furnish the title product as colourless fine needles (95 ma, 27%).
  • Method 2:
  • To a vigorously stirred solution of (3S,5R)-3-wσpropyl-5-phenyl-3,4,5,6-tetrahydro-2H-1,4-oxazin-2-one (200 mg. 0.91 mmol) and Na2CO3 (415 mg, 2.73 mmol, 3.0 equiv.) in anhydrous dichloromethane (15 mL) was added N-Fmoc-L-alanine acid chloride (428 mg. 1.36 mmol, 1.5 equiv.) in anhydrous dichloromethane (10 mL). The resulting mixture was stirred under nitrogen for 1 hour. Filtration through a short pad of Celite® and removal of solvent from the filtrate in vacuo furnished the crude material which was purified by flash column chromatography on silica, eluting with petrol and diethyl ether (3:7) to furnish the title product as colourless fine needles (380 mg, 82%); m.p. 72-75° C.; v(max) (KBr) 3402 (N—H), 2969 (C—H), 1760 (C═O, lactone), 1718 (C═O, carbamate), 1654 (C═O, amide) cm″1; δH (250 MHz, CDCl3) 7.65-7.15 (13H, m, Fmoc×8, Ph×5), 5.46 (1H, br, NH), 5.03-4.98 (1H, m, Phal), 4.75 (1H, d, /10.0 Hz CHCH(CHs)2), 4.32-4.13 (3H, m, PhCHCH, and OCH2CH), 4.07-4.02 (1H, m. CHCH3), 3.89-3.79 (2H, m, OCH2CH), 2.18-2.00 (1H, m, CH(CHg)2), 1.21 (3H, d. J 5.5 Hz, CH(CH3)2×3), 1.19 (3H, d, /5.0 Hz, CHCH3), 1.02 (3H, d, J=6.5 Hz, CH(CH3)2×3); 8, (62.5 MHz, CDCl3) 174.1, 167.1, 153.7, 142.8, 140.2, 134.9, 128.8, 128.2, 127.2, 124.9, 124.1, 118.9, 66.3, 65.7, 55.2, 52.5, 47.5, 45.0, 31.6 20.1, 18.2, 17.8; mIz {CI., NH3), 535 (MNa+, 73%), 513 (MH+, 100%), 334 (11%), 333 (53%), 328 (23%), and 311 (19%); (CI.) FIRMS for C31H33N2O5 requires 513.2381. found 513.2378. [α]D 20−22.1 (c 1.05 CHCl3).
  • N-Fmoc-L-valine Acid Chloride
  • Figure US20120190816A9-20120726-C00035
  • To a solution of N-Fmoc-L-alanine (3.00 g, 8.7 mmol, 1.0 equiv.) in anhydrous dichloromethane (40 mL) was added thionyl chloride (6.5 mL, 87 mmol, 10.0 equiv.). The resulting mixture was refluxed for 2 hours under an atmosphere of nitrogen. The solvent and excess of thionyl dichloride were removed in vacuo and the crude N-Fmoc-L-alanine acid chloride was partially purified by recrystallization from dichloromethane and hexane (2.50 g, 80%); m.p. 75-79° C. (lit. m.p. 111-112° C.); v(max) (K Br) 3317 (N—H), 2969 (C—H), 1788 (C═O, acid chloride), 1696 (C═O, carbamate), cm″1; δH (250 MHz, CDCl3) 7.78-7.29 (8H, m, Fmoc), 5.20 (1H, d, J=9.5 Hz, NH), 4.55-4.33 (3H, m, CH3CH×1, CHCH2×2), 4.23 (1H, t, J=6.5 Hz, CHCH2); 2.40 (1H, m, CH(CH3)2), 1.05 (3H, d, J 7.0 Hz, CH(CHg)2×3), 0.95 (3H, d, /7.0 Hz, CH(CHb)2×3); δc (62.5 MHz, CDCl3) 175.4, 157.1, 143.9, 141.8, 128.2, 127.5, 125.3, 120.5, 68.2, 67.7, 47.5, 30.3 19.7, 17.4; [α]D 20+13.2 (c 1.05 CHCl3) (lit. [α]D 24+5.5 (c 1.00 CH2Cl2)).
  • (3S,5R)—N—[N-Fmoc-(S)valinyl]-3-isopropyl-5-ρhenyl-3,4,5,6,-tetrahydro-2H-1,4-oxazin-2-one
  • Figure US20120190816A9-20120726-C00036
  • Method 1:
  • To a solution of (3S,5R)-3-wøpropyl-5-phenyl-3,4,5,6-tetrahydro-2H-1,4-oxazin-2-one (200 mg, 0.91 mmol) in anhydrous dichloromethane (20 mL) was added N-Fmoc-L-valine acid chloride (391 mg. 1.10 mmol. 1.2 equiv.) in anhydrous dichloromethane (5 mL). The resulting solution was stirred for 24 hours. The solvent was removed in vacuo and the crude material was purified by flash column chromatography on silica, eluting with petrol and diethyl ether (2:3) to furnish the title product as colourless fine needles (80 mg, 16%).
  • Method 2:
  • To a vigorously stirred solution of (3,S,5R)-3-isopropyl-5-phenyl-3,4,5,6-tetrahydro-2H-1,4-oxazin-2-one (200 mg, 0.91 mmol) and Na2CO3 (415 mg, 2.73 mmol, 3.0 equiv.) in anhydrous dichloromethane (15 mL) was added N-Fmoc-L-valine acid chloride (533 mg, 1.36 mmol, 1.5 equiv.) in anhydrous dichloromethane (10 mL). The resulting mixture was stirred under nitrogen for 6 hours. Filtration through a short pad of Celite® and removal of solvent from the filtrate in vacuo furnished the crude material which was purified by flash column chromatography on silica, eluting with petrol and diethyl ether (1:1) to furnish the title product as colourless fine needles (260 mg, 52%); m.p. 75-78° C.; v(max) (KBr) 3421 (N—H), 2966 (C—H), 1763 (C═O, lactone), 1718 (C═O, carbamate), 1654 (C═O, amide) cm″1; δH (400 MHz, DMSO-J6, 120° C.) 7.83-7.25 (13H, m, Fmoc×8, Ph×5), 6.81 (1H, br, NH), 5.34 (1H, dd, /6.2 Hz, /′ 10.8 Hz, PhCH), 4.77 (1H, d, /9.5 Hz, NCH), 4.58 (1H, dd, J=6.2 Hz, /′ 12.5 Hz, PhCHCH2×1), 4.47 (1H, dd, J=10.8 Hz, J′ 12.4 Hz, PhCHCH2×1), 4.32-4.28 (1H, m, CH3CH), 4.24-4.15 (3H, m. OCH2CH), 2.22-2.05 (2H, m, CH(CH3)2×2), 1.18 (3H, d, J 6.5 Hz, CH(CH3)2×3), 0.96 (3H, d, J=6.5 Hz, CHCH3), 0.84 (6H, t, J=7.0 Hz, CH(CH3)2×6); δc (62.5 MHz, CDCl3) 174.5, 168.5, 155.5, 144.2, 141.7, 130.2, 129.6, 128.1, 127.4, 126.7, 126.4, 125.5, 120.4, 68.0, 67.1, 61.3, 57.7 57.0, 47.4, 33.2, 32.6, 21.8, 20.1, 19.7, 18.4, 17.5; % (CL), 614 (100%). 576 (50%), 564 (9%), 541 (MH+), 519 (22%), and 503 (16%); HRMS for C33H37N2O5 requires 541.2692 found 541.2709. [α]D 20−28.5 (c 0.56 CHCl3).
  • Phenacyl N-tert-butoxycarboxyl-(S)-phenylalanate
  • Figure US20120190816A9-20120726-C00037
  • To a solution of potassium hydroxide (0.64 g, 11.31 mmol) in methanol (15 mL) was added Boc-L-phenylalanine (3.00 g, 11.31 mmol). The resulting solution was stirred at room temperature for 3 hours. The solvent was removed and the crude material was dried in vacuo to yield white powder which was subsequently added in anhydrous N,N-dimethylformamide (15 mL) and treated with 2-bromoacetophenone (2.07 g, 13.57 mmol, 1.2 equiv.). The resulting solution was stirred at room temperature under nitrogen for 24 hours and was quenched by addition of water (20 mL). The precipitate can be either used as crude in next step or purified by recrystallization from diethyl ether yield the title compound as white fine needles (3.55 g, 82%); nip 140.0-141.0° C.; v(max) (KBr) 3395 (N—H), 2973 (C—H), 1757 (C═O, ester), 1715 (C═O, ketone), 1692 (C═O, carbamate) cm1; δH (250 MHz, CDCl3) 7.93-7.24 (1OH, m, Ph), 5.50 (1H, d, /16.4 Hz, OCH2×1), 5.31 (1H, d, /16.4 Hz, OCH2×1), 4.97 (1H, d, 8.1 Hz, NH), 4.75 (1H, dd, /7.2 Hz, r 6.1 Hz, CH), 3.36 (1H, dd, /5.4 Hz, r 14.1 Hz, PhCH, X 1), 3.14 (1H, dd, /7.1 Hz, /v 14.0 Hz, PhCH2×1), 1.40 (9H, s, f-butyl); δc (62.5 MHz, CDCl3) 191.9 172.0, 155.6, 136.5, 134.4, 129.9, 129.3, 129.0, 128.2, 127.4, 80.4, 66.8, 54.7, 38.6, 28.7. [α]D 20−7.9 (c 1.01 CHCl3).
  • (3S)-3-Benzyl-5-phenyl-3,6-dihydro-2H-1,4-oxazin-2-one
  • Figure US20120190816A9-20120726-C00038
  • To a suspension of phenacyl N-tert-butoxycarboxyl-(S)-phenylalanate (3.51 g. 9.16 mmol) in diethyl ether (150 mL) was added hydrogen bromide in acetic acid (33% w/w, 4.8 mL, 27.5 mmol, 3.0 equiv.). The resulting mixture was stirred under nitrogen for 3 hours during which time another portion of diethyl ether (100 mL) was added. The solid was separated by filtration through a sinter, washed with diethyl ether (2×30 mL) and dried in vacuo to furnish the amino ester hydrobromide which was subsequently dissolved in pH 5 acetate buffer (100 mL, 0.2 M, prepared from 70 parts 0.2 M aqueous sodium acetate and 30 parts 0.2 M aqueous acetic acid). The resulting mixture was stirred under nitrogen for 12 hours during which time yellow oil was formed. The precipitate can be either used as crude in next step or purified by flash column chromatography on silica, eluting with petrol and diethyl ether (3:2) to furnish the title compound as white solid (1.56 g, 65%); v(max) (KBr) 2932 (C—H), 1751 (C═O), cm″1; m.p. 57.0-59.0° C. (lit. 58.0-60.0° C.)63; δH (250 MHz, CDCl3) 7.90-7.18 (10H, m, Ph), 5.01 (1H, d, /14.2 Hz, CHCH2O×1), 4.83 (H, m, CHCH2Ph), 4.06 (1H, m, CHCH2), 4.11 (1H, d, J=14.2 Hz, CHCH2O×1), 3.46 (1H, dd, /5.45 Hz, /13.5 Hz, CHCH2Ph×1), 3.32 (1H, dd, /5.45 Hz, /13.5 Hz, CHCH2Ph×1); δc (62.5 MHz, CDCl3) 169.0, 162.8, 136.6, 134.7, 131.7, 130.6, 129.2, 128.8, 127.6, 126.3, 67.8, 61.0, 39.4; % (CL, NH3), 266 (32%), 265 (M+, 100%), 264 (42%), 263 (5%) and 262 (3%); HRMS for C17H15NO2 requires 265.1103. found 265.1108. [α]D 20+85.1 (c 1.04 CHCl3) (lit. [α]D 20+85.7 (c 2.00 CHCl3)).
  • (3S,5R)-3-benzyl-5-phenyl-3,4,5,6-tetrahydro-2H-1,4-oxazin-2-one
  • Figure US20120190816A9-20120726-C00039
  • To a solution of (3£)-3-Benzyl-5-ρhenyl-3,6-dihydro-2H-1,4-oxazin-2-one (1.56 g, 5.88 mmol, 1.0 equiv.) in anhydrous methanol (40 mL) under an atmosphere of nitrogen was added palladium on activated carbon (156 mg, 0.1 equiv. by mass). The mixture was consecutively degassed and purged three times with hydrogen and then stirred for 5 hours under an atmosphere of hydrogen. Filtration through a short pad of Celite® and removal of solvent from the filtrate in vacuo yielded the crude product which was purified by flash column chromatography on silica, eluting with petrol and diethyl ether (4:1) to furnish the title product as a white solid (514 mg, 33%); m.p. 75.0-76.0° C. (lit. 76.0-78.0° C.)5; v(max) (KBr) 3321 (N—H), 2949 (C—H), 1731 (C═O), cm1; δH (250 MHz, CDCl3) 7.36-7.21 (1OH, m, Ph), 4.34-4.1.5 (3H, m, PhCHCH2), 3.97 (1H, dd, J 3.2, r 10.0 Hz, NHCH), 3.56, (1H, dd, J 3.2, Jv 13.6 Hz, CĤPh×1), 3.00, (1H, dd, /10.0, T 13.6 Hz, CH2Ph×1), 1.84 (1H, br, NH); δc (62.5 MHz, CDCl3) 169.6, 138.0, 137.8, 129.8, 129.3, 129.2, 129.1, 127.5, 127.4, 75.3, 60.6, 57.9, 39.4; mIz (CL, NH3), 268 (MH+, 40%), 267 (80%, M+), 223 (100%), and 209 (57%); HRMS for C17H17NO2 requires 267.1259 found 267.1263. [α]D 20−156.4 (c 1.02 CHCl3) (lit. [α]D 20−157.9 (c 2.00 CHCl3)).
  • (3S,5R)—N—[N-Fmoc-(S)-alanyl]-3-benzyl-5-phenyl-3,4,5,6,-tetrahydro-2H-1,4-oxazin-2-one
  • Figure US20120190816A9-20120726-C00040
  • To a vigorously stirred solution of (3S,5R)-3-benzyl-5-phenyl-3,4,5,6-tetrahydro-2H-1,4-oxazin-2-one (200 mg, 0.75 mmol) and Na3CO3 (239 mg, 2.25 mmol, 3.0 equiv.) in anhydrous dichloromethane (20 mL) was added N-Fmoc-L-alanine acid chloride (354 mg, 1.12 mmol, 1.5 equiv.) in anhydrous dichloromethane (6 mL). The resulting mixture was stirred under nitrogen for 4 hours. Filtration through a short pad of Celite® and removal of solvent from the filtrate in vacuo furnished the crude product which was purified by flash column chromatography on silica, eluting with petrol and diethyl ether (2:3) to furnish the title product as colourless fine needles (150 mg, 36%); m.p. 87-89° C.; v(max) (KBr) 3413 (N—H), 2981 (C—H), 1760 (C═O, lactone), 1718 (C═O, carbamate), 1656 (C═O, amide) cm−1; δH (400 MHz, DMSO-J, 100° C.) 7.90-7.27 (18H, m, Fmoc×8, Ph×10), 7.07 (1H, br, NH), 5.47 (1H, dd, /4.8 Hz, /′ 7.6 Hz, PhCH), 5.32 (1H, t, J 7.2 Hz, NCH), 4.82 (1H, dd, /7.6 Hz, J′ 12.4 Hz, PhCHCH2×1). 4.71 (1H, dd, J 12 Hz, J′ 12.4 Hz, PhCHCH2×1). 4.41 (1H, q, J 6.4 Hz, CH3CH), 4.37-4.21 (3H, m, OCH2CH), 3.15 (2H, d, /6.8 Hz, CH2Ph), 1.21 (3H, d, /6.8 Hz, CH3); 6, (62.5 MHz, CDCl3) 174.8, 170.8, 168.8, 159.6, 155.0, 142.7, 140.2, 128.9, 128.5, 127.9, 127.6, 127.4, 126.9, 126.6, 126.1, 124.2, 119.0, 662, 62.1, 61.0, 52.5, 47.8, 45.9, 33.8, 15.6; mIz (CL), 560 (M+), 502 (100%), 464 (43%), 426 (19%), and 414 (83%); HRMS for C35H32N2O5 requires 560.2303 found 560.2293. [α]D 20−56.2 (c 1.01 CHCl3). (3S,5R)—N—[N-Fmoc-(S)-alanyl]-3-tert-butyl-5-phenyl-3,4,5,6,-tetrahydro-2H-1,4-oxazin-2-one
  • Figure US20120190816A9-20120726-C00041
  • To a vigorously stirred solution of (3S,5R)-3-fe/t-butyl-5-phenyl-3,4,5,6-tetrahydro-2H-1,4-oxazin-2-one (150 mg, 0.63 mmol) in anhydrous dichloromethane (15 mL) and Na2CO3 (341 mg, 3.22 mmol, 5.0 equiv.) was added N-Fmoc-L-alanine acid chloride (298 mg, 0.95 mmol, 1.5 equiv.). The resulting mixture was stirred under an atmosphere of nitrogen for 18 hours. Filtration through a short pad of Celite® and removal of solvent from the filtrate in vacuo gave the crude material which was purified by flash column chromatography on silica, eluting with petrol and diethyl ether (1:1) to furnish the title product as colourless fine needles (170 mg, 51%); m.p. 74-75° C.; v(max) (KBr) 2976 (C—H). 1752 (C═O, lactone), 1724 (C═O, carbamate), 1662 (C═O, amide) cm″1; δH (250 MHz, DMSO-̂6) 7.90-7.29 (13H, m, Fmoc×8. Ph×5), 5.39 (1H, br, PhCH), 4.62 (2H, br, CH2O), 4.33 (1H, br, CH3CH), 4.18 (3H, br, OCH2CH), 1.23 (3H, d, /6.70 Hz, CHCH3), 0.88 (9H, s, QCĤ); δc (62.5 MHz, DMSO-̂6) 175.9, 168.1, 155.8, 144.2, 144.1, 141.0, 137.1, 129.0, 128.0, 127.4, 125.8, 125.7, 120.4, 66.0, 62.2, 55.3, 53.0, 48.7, 46.9, 37.0, 28.6, 17.4; mIz (CL); 528 (15%), 527 (MH+, 34%), 526 (M, 100%), 470 (62%), and 414 (74%); FIRMS for C32H34N2O5 requires 526.2459 found 526.2457. [α]D 20−10.9 (c 1.20 CHCl3).
  • (3S,5R)—N—[N-Fmoc-(S)valinyl]-3-tert-butyl-5-phenyl-3,4,5,6,-tetrahydro-2H-1, 4-oxazin-2-one
  • Figure US20120190816A9-20120726-C00042
  • To a vigorously stirred solution of (3S,5R)-3-tert-butyl-5-phenyl-3,4,5,6-tetrahydro-2H-1,4-oxazin-2-one (75 mg, 0.32 mmol) in anhydrous dichloromethane (7 mL) and Na2CO3 (170 mg, 1.61 mmol, 5.0 equiv.) was added N-Fmoc-L- valine acid chloride (170 mg, 0.48 mmol, 1.5 equiv.). The resulting mixture was stirred under an atmosphere of nitrogen for 48 hours. Filtration through a short pad of Celite® and removal of solvent from the filtrate in vacuo gave the crude material which was purified by flash column chromatography on silica, eluting with petrol and diethyl ether (1:1) to furnish the title product as colourless fine needles (32 mg, 18%); m.p. 71-73° C.; v(max) (KBr) 2964 (C—H), 1752 (C═O, lactone), 1734 (C═O, carbamate), 1655 (C═O, amide) cm″1; δH (250 MHz, CDCl3) 7.77-7.25 (13H, m, Fmoc×8, Ph×5), 5.30 (1H, br, (CH3)2CHCH), 5.13 (1H, t, J 10.0 Hz, PhCH), 4.52-4.38 (2H, m, PhCHCH2O), 4.29-4.21 (1H, m, OCH2CH), 4.15 (3H, br, OCH2CH×2 and CHC(CH3)3), 1.99-1.96 (1H, m, (CH3)2CH), 1.22 (9H, s, C(CH3)3); 0.97-0.84 (6H, m, (CH3)2CH); δc (62.5 MHz, CDCl3) 175.9, 168.4, 155.4, 144.2, 141.7, 136.5, 130.2, 129.2, 128.1, 127.6, 126.4, 125.5, 120.4, 68.3, 67.1, 64.3, 57.6, 56.5, 47.5, 38.0, 32.7, 30.7, 20.2, 17.4; m/z (CL), 554 (MH+, 14%), 502 (100%), 464 (40%), 426 (20%), and 414 (74%); FIRMS for C34H38N2O5 requires 554.2781 found 554.2790. [α]D 20−17.5 (c 1.48 CHCl3).
  • N-t-Boc-(S)-alanyl-N-(1-phenyl-2-hydroxylethyl)glycyl-(S)-alanine tert-butyl ester
  • Figure US20120190816A9-20120726-C00043
  • To a suspension of L-alanine i-butyl ester hydrochloride (408 mg, 2.3 mmol) and (5S)-4-[N-?-Boc-(S)-alanyl]-5-phenyl-3,4,5,6-tetrahydro-2H-1,4-oxazin-2-one (0.78 g, 2.3 mmol) in anhydrous dioxane (20 mL) was added distilled triethylamine (0.32 mL, 2.3 mmol). The resulting mixture was stirred at room temperature vigorously for 5 days. Water (20 mL) was added and the mixture was extracted with diethyl ether (3×25 mL). The combined organic extracts were washed with brine (50 mL) and dried over MgSO4. The solvents were removed in vacuo and the crude product was purified by flash column chromatography on silica, eluting with petrol, diethyl ether, and methanol (10:10:1) to furnish the title compound as fine colourless needles (0.67 g, 59%); mp 69.0-70.0° C.; v(max) (KBr) 3312 (O—H), 2980 (C—H), 1738 (C═O, lactone), 1701 (C═O, carbamate), 1654 (C═O, amide) cm″1; δH (250 MHz, DMSO—O 8.69 (1H, d, J 7.0 Hz, NH), 7.39 (1H, d, J 7.0 Hz, NH), 7.40-7.26 (5H, m, Ph), 5.80-5.74 (1H, m, PhCH), 5.07-5.02 (1H, m, OH), 4.69 (1H, d, J 14.0 Hz, NCH2×1), 4.13-4.04 (2H, m, CH3CH×2), 3.96-3.91 (1H, m, HOCH2), 3.77-3.74 (1H, m, HOCH2), 3.63 (1H, d, J 18.0 Hz, NCH2×1), 1.43 (18H, s, f-butyl×2), 1.23 (3H, d, J 13.0 Hz, CH3), 1.12 (3H, d, J 13.0 Hz5CH3); δc (62.5 MHz, DMSO-J) 176.2, 172.0, 170.7, 156.1, 138.3, 129.0, 128.5, 127.5, 80.9, 78.6, 60.2, 57.5, 49.0, 46.7, 28.5, 27.9, 17.4, 16.9; % (CL, NH3), 494 (MH+, 8%), 476 (6%), 376 (35%), 293 (21%), 249 (46%), and 44 (100%); HRMS for C25H40N3O7 requires 494.2856. found 494.2872. [α]D 20+24.3 (c 1.09 CHCl3).
  • L-Alanine tert-butyl ester
  • Figure US20120190816A9-20120726-C00044
  • To a mixture of sodium carbonate (875 mg, 8.25 mmol, 5.0 equiv.) in deioned water (10 mL) and diethyl ether (10 mL) was added L-alanine tert-butyl ester hydrochloride (300 mg, 1.65 mmol, 1.0 equiv.). The resulting solution was stirred under an atmosphere of nitrogen for 1 hour. The aqueous phase was extracted with diethyl ether (3×10 mL) and the combined extracts were dried over MgSO4. The solvent was removed in vacuo to settle the title compounds as a colourless oil (200 mg, 84%); v(max) (film) 3377 (N—H), 2978 (C—H), 1729 (C═O) cm″1; δH(250 MHz, CDCl3) 3.42 (1H, q, J 7.02 Hz CH). 1.63 (2H, br, NH2), 1.46 (9H, s, (CH3)3), 1.29 (3H, d, J 7.02 Hz, CH3CH); δc (62.5 MHz, CDCl3) 177.1, 81.2, 51.0, 28.4, 21.2; [α]D 20+3.7 (c 0.97 CHCl3), (lit. [α]D 24+2.3 (c 1.00 CHCl3)).
  • N-Fmoc-(S)-alanyl-N-((1R)-ρhenyl-2-hydroxylethyl)-(S)-alanyl-(S)-alanine tert-butyl ester
  • Figure US20120190816A9-20120726-C00045
  • Method 1:
  • (3S,5R)—N—[N-Fmoc-(S)alanyl]-3-methyl-5-phenyl-3,4,5,6,-tetrahydro-2H-1,4-oxazin-2-one (300 mg, 0.62 mmol) and L-alanine tert-butyl ester (135 mg, 0.93 mmol, 1.5 equiv.) were dissolved in anhydrous dichloromethane (14 mL) in a doubly sealed PTFE cylinder and subjected to ultra-high pressure of 19 kbar for 48 hours. After releasing the pressure, the solution was filtered through a short pad of Celite® and removal of solvent from the filtrate in vacuo yielded the crude product which was purified by flash column chromatography on silica, eluting with diethyl ether and dichloromethane (4:1) to furnish the starting material (33) (40 mg, 13%) and the title product as fine colourless needles (122 mg, 31%).
  • Method 2:
  • To a solution of L-alanine tert-butyl ester (466 mg, 3.21 mmol, 3.0 equvi.) in anhydrous dichloromethane (30 mL) was added trimethyl aluminium (1.87 mL, 3.75 mmol, 2 M in hexane, 3.5 equiv.) under an atmosphere of nitrogen. After 15 minutes, (3S,5R)—N—[N-Fmoc-(S)alanyl]-3-methyl-5-phenyl-3,4,5,6,-tetrahydro-2H-1,4-oxazin-2-one (520 mg, 1.07 mmol) in anhydrous dichloromethane (10 mL) was added. The resulting solution was stirred at room temperature for 24 hours. The reaction was quenched by the addition of water (10 mL) and the organic phase was then washed with saturated copper sulphate (20 mL). The aqueous phase was extracted with diethyl ether (3×20 mL) and the combined organic extracts were washed with brine (50 mL) and dried over MgSO4. The solvents were removed in vacuo and the crude product was purified by flash column chromatography on silica, eluting with diethyl ether and dichloromethane (4:1) to furnish the title compound as fine colourless needles (497 mg, 74%); m.p. 69-71° C.; v(max) (KBr) 3409 (O—H), 2979 (C—H), 1733 (C═O, lactone), 1718 (C═O, carbamate), 1646 (C═O, amide) cm″1; δH (250 MHz, OMSO-d) 7.96-7.34 (13H, m, Fmoc×8 and Ph×5), 7.90 (1H, d, /7.41 Hz, NH), 6.10 (1H, s, OH), 5.41-5.33 (1H, m, PhCH), 4.86 (1H, q, /6.76 Hz, CHCH3), 4.40-4.24 (3H, m, OCH2CH), 4.16-4.07 (2H, m, CH2OH), 3.79 (1H, q, /6.95 Hz, CHCH3), 3.63 (1171, q, /6.65 Hz, CHCH3), 1.44 (3H, d, /6.12 Hz, CHCH3), 1.40 (3H, d, /7.19 Hz, CHCH3), 1.27 (9H, s, C(CHg)3), 0.90 (3H, d, /7.42 Hz, CHCH3); δc (62.5 MHz, OMSO-d) 173.5, 171.3, 170.3, 156.6, 144.1, 141.1, 137.6, 129.1, 128.7, 128.0, 127.6, 125.6, 121.7, 120.5, 80.2, 66.2, 60.9, 60.2, 48.7, 47.4, 46.9, 27.8, 17.4, 17.1, 14.9; % (CL, NH3), 775 (100%), 630 (MH+, 25%), 485 (34%), and 408 (17%); HRMS for C36H44N3O7 requires 630.3170. found 630.3166; [α]D 20−41.2 (c 1.08 CHCl3).
  • N-Acetyl-N-(1-phenyl-2-hydroxylethyl)alanyl-(S)-alanine tert-butyl ester
  • Figure US20120190816A9-20120726-C00046
  • (3S,5R)-4-N-acetyl-3-methyl-5-ρhenyl-3,4,5,6,-tetrahydro-2H-1,4-oxazin-2-one (68) (220 mg, 0.94 mmol) and L-alanine tert-butyl ester (66) (205 mg, 1.42 mmol, 1.5 equiv.) were dissolved in anhydrous dichloromethane (14 mL) in a doubly sealed PTFE cylinder and subjected to ultra-high pressure of 19 kbar for 48 hours. After releasing the pressure, the solution was filtered through a short pad of Celite® and removal of solvent from the filtrate in vacuo yielded the crude product which was purified by flash column chromatography on silica eluting with diethyl ether and dichloromethane (4:1) to furnish the title product as fine colourless needles (120 mg, 34%); m.p. 38-40° C.; v(max) (KBr) 3411 (O—H), 2980 (C—H), 1735 (C═O, lactone), 1646 (C═O, amide) cm″1; δH(250 MHz, OMSO-d) 8.06 (0.5H, d, /6.95 Hz, NH×0.5), 7.55-7.24 (5H, m, Ph), 6.54 (0.5H, d, J 6.38 Hz, NH×0.5), 5.82 (0.5H, t, /4.88 Hz, OH×0.5), 5.14-5.06 (1H, m, PhCH), 4.83 (0.5H, t, J 6.56 Hz, OH×0.5), 4.35 (0.5H, q, J 6.99 Hz, CH3CH×0.5), 4.08-4.03 (2H, m, CH2OH), 3.98-3.76 (1.5H, m, CHCH3×0.5 and CHCH3×1), 2.23 (1.5H, s, COCH3), 2.14 (1.5H, s, COCH3), 1.46-1.39 (12H, m, CHCH3×3 and C(CH3)3×9), 1.19 (1.5H, d, /7.15 Hz, CHCH3×1.5), 0.97 (1.5H, d, J 7.23 Hz, CHCH3×1.5); δc (62.5 MHz, DMSO-d) 171.8, 171.7, 171.0, 170.8, 170.2, 140.0, 138.2, 129.1, 128.2, 128.0, 126.8, 80.7, 62.7, 62.5, 60.8, 56.3, 53.4, 48.8, 48.7, 27.9, 17.5, 16.9, 16.7, 15.2; % (CL, NH3), 379 (MH+, 70%), 361 (18%), 305 (20%), 249 (38%), 234 (100%), and 219 (40%); FIRMS for C20H31N2O5 requires 379.2225 found 379.2240; [α]D 20−37.0 (c 1.06 CHCl3).
  • N-Fmoc-(S)-alanyl-N-((1S)-ρhenyl-2-hydroxylethyl)-(R)-alanyl-(S)-alanine tent-butyl ester
  • Figure US20120190816A9-20120726-C00047
  • To a solution of L-alanine tert-butyl ester (251 mg, 1.73 mmol, 3.0 equiv.) in anhydrous dichloromethane (25 mL) was added trimethyl aluminium (2.03 mL, 2.03 mmol, 2 M in hexane, 3.5 equiv.) under an atmosphere of nitrogen. After 15 minutes, (3R,5S)—N—[N-Fmoc-(S)alanyl]-3-methyl-5-ρhenyl˜3,4,5,6,-tetrahydro-2H-1,4-oxazin-2-one (280 mg, 0.58 mmol) in anhydrous dichloromethane (8 mL) was added. The resulting solution was stirred at room temperature for 24 hours. The reaction was quenched by the addition of water (7 mL) and the organic phase was then washed with saturated copper sulphate (15 mL). The aqueous phase was extracted with diethyl ether (3×20 mL) and the combined organic extracts were dried over MgSO4. The solvent was removed in vacuo and the crude product was purified by flash column chromatography on silica, eluting with petrol and diethyl ether (1:4) to furnish the title compound as fine colourless needles (226 mg, 62%); m.p. 87-88° C.; v(max) (KBr) 3410 (O—H), 2980 (C—H), 1727 (C═O). 1654 (C═O) cm″1; δH (250 MHz, DMSO-d), 8.35 (0.5H, d, /6.18 Hz, NH) 7.91-7.12 (13H, m, Fmoc×8 and Ph×5), 7.65 (0.51-1, d, /7.14 Hz, NH), 7.55 (0.5H, d, /7.32 Hz, NH). 6.39 (0.5H, d, /7.45 Hz, NH), 5.21-5.18 (0.5H, m, PhCH), 5.03-5.01 (0.5H, m, PhCH), 4.94-4.92 (0.5H, m, NHCHCH3), 4.80-4.78 (0.5H, m, NHCHCH3), 4.65-4.62 (0.5H, m, NCHCH3), 4.27-4.18 (3.5H, m, OCH2CH, and Cl2O×0.5), 4.09-3.93 (2.51-1, in, CH2OH×1.5 and NHCHCH3), 3.62-3.60 (0.5H, in, NCHCH3×1), 1.44-1.36 (13.5H, s, (CEb)3×9, CHCH3×4.5), 1.23 (1.5H, d, /6.63 Hz, CHCH3), 1.13 (1.51-1, d, /7.35 Hz, CHCH3), 0.92 (1.5H, d, /7.07 Hz, CHCH3); δc (62.5 MHz, OMSO-d) 173.4, 172.9, 171.9, 171.6, 169.7, 156.0, 144.2, 144.1, 141.1, 137.2, 129.0, 128.3, 128.0, 127.7, 127.4, 127.3, 125.7, 120.5, 81.2, 80.8, 66.1, 61.6, 55.3, 53.6, 48.6, 48.3, 47.5, 47.0, 27.9, 18.5, 18.2, 17.7, 17.1, 15.4; mIz (CL, NH3), 775 (100%), 629 (M+, 36%), 457 (58%), 345 (27%), 231 (33%) and 178 (100%); HRMS for C36H43N3O7 requires 629.3092. found 629.3093; [α]D 20+14.20 (c 1.15 CHCl3).
  • L-Valine tort-butyl ester
  • Figure US20120190816A9-20120726-C00048
  • To a mixture of sodium carbonate (1.20 g, 9.54 mmol, 5.0 equiv.) in deioned water (20 mL) and diethyl ether (20 mL) was added L-valine tert-butyl ester hydrochloride (400 mg, 1.71 mmol, 1.0 equiv.). The resulting solution was stirred for 2 hours under an atmosphere of nitrogen. The aqueous phase was extracted with diethyl ether (3×15 mL) and the combined extracts were dried over MgSO4. The solvent was removed in vacuo to settle the title compound as colourless oil (320 mg, 97%); v(max) (film) 3393 (N—H), 2967 (C—H), 1728 (C═O) cm″1; δH (250 MHz, CDCl3) 3.16 (1H, d, J 4.79 Hz, CHNH2), 2.04-1.97 (1H, m, CH(CH3)2) 1.47 (9H, s, (CH3)3), 1.38 (2H, s, NH2), 0.97 (3H, d, /6.88 Hz, (CH)CH×3), 0.90 (3H, d, J 6.86 Hz, (CH3)2CH×3); δc (62.5 MHz, CDCl3) 175.3, 81.2, 60.7 32.6, 28.5, 19.7, 17.4; [α]D 20+26.4 (c CHCl3), (lit. [α]D 24+25.3 (c 1.00 CHCl3)).
  • N-Fmoc-(S)-a\any\-N-(1-phenyl-2-hydroxylethyl)-(5)-alanyl-(5)-valine tert-butyl ester (74)
  • Figure US20120190816A9-20120726-C00049
  • To a solution of L-valine tert-huiyl ester (161 mg, 0.93 mmol, 3.0 equiv.) in anhydrous dichloromethane (10 mL) was added trimethyl aluminium (0.55 mL, 1.09 mmol, 2 M in hexane, 3.5 equiv.) under an atmosphere of nitrogen. After 15 minutes, (3S,5R)—N(N-Fmoc-(S)alanyl]-3-methyl-5-ρhenyl-3,4,5,6,-tetrahydro-2H-1,4-oxazin-2-one (150 mg, 0.31 mmol) in anhydrous dichloromethane (5 mL) was added. The resulting solution was stirred at room temperature for 24 hours. The reaction was quenched by the addition of saturated copper sulphate (20 mL) and the mixture was extracted with diethyl ether (3×20 mL). The combined organic extracts were dried over MgSO4. The solvents were removed in vacuo and the crude product was purified by flash column chromatography on silica, eluting with diethyl ether and dichloromethane (9:1) to furnish the title compound as fine colourless needles (128 mg, 63%); m.p. 75.0-76.0° C.; v9max) (KBr) 3411 (O—H), 2973 (C—H), 1718 (C═O). 1654 (C═O) cm1; δH (250 MHz, DMSO—O 7.96 d, /7.4 Hz, NH), 7.97-7.29 (13H, m, Fmoc×8 and Ph×5), 5.43 (1H, br, OH), 5.35 (1H, t, /4.2 Hz, PhCH), 4.91 (1H, t, /6.8 Hz, CHCH3), 4.43-4.40 (1H, m, OCH2CH), 4.31-4.21 (2H, m, OCH2CH), 4.20-4.05 (2H, m, HOCH2), 3.79-3.71 (1H, m, CHCH(CH3)2), 3.70-3.68 (1H, m, CHCH3), 1.81-1.76 (1H, m, CH(CH3)2), 1.46-1.34 (6H, m, CHCH3×2) 1.31 (9H, s, f-butyl), 0.68-0.64 (6H, m, CH(CHg)2); δc (62.5 MHz, OMSO-d) 173.1, 170.1, 170.0, 156.4, 144.2, 141.1, 137.6, 129.1, 128.7, 128.3, 128.0, 127.4, 125.7, 124.5, 80.5, 66.4, 63.2, 61.2, 58.1, 53.4, 47.1, 30.1, 27.9, 18.8, 18.4, 17.8, 15.1; mIz (CL, NH3), 657 (M+, 34%), 579 (40%), 427 (59%), 363 (26%), and 244 (100%); FIRMS for C38H47N3O7 requires 657.3404. found 657.3398; [α]D 20−38.7 (c 0.96 CHCl3).
  • t-Butyl N—[(S)-2-hydroxy-1-phenylethyl]-(5)-valinyl-(5)-alanate
  • Figure US20120190816A9-20120726-C00050
  • To a solution of L-alanine tert-butyl ester (180 mg, 1.24 mmol, 3.0 equiv.) in anhydrous dichloromethane (10 mL) was added trimethyl aluminium (0.56 mL, 1.12 mmol, 2 M in hexane, 2.7 equiv.) under an atmosphere of nitrogen. After 15 minutes. (3S,5R)-3-wopropyl-5-phenyl-3,4,5,6-tetrahydro-2H-1,4-oxazin-2-one (91 mg, 0.41 mmol) in anhydrous dichloromethane (5 mL) was added. The resulting solution was stirred at room temperature for 24 hours. The reaction was quenched by the addition of saturated copper sulphate (15 mL) and the mixture extracted with diethyl ether (3×15 mL). The combined organic extracts were dried over MgSO4. The solvents were removed in vacuo and the crude product was purified by flash column chromatography on silica, eluting with petrol and diethyl ether (9:1 then 1:20) to furnish the starting material (60 mg, 60%) and the title compound as light yellow oil (50 mg, 33%); v(max) (film) 3328 (O—H), 2977 (C—H), 1733 (C═O, ester), 1651 (C═O, amide) cm″1; δH (250 MHz, CDCl3) 7.73 (1H, d, J 8.6 Hz, NH), 7.30-7.18 (5H, m, Ph), 4.54-4.78 (1H, m, CHCH3), 3.74-3.68 (1H, m, PhCH), 3.59-3.50 (2H, m, HOCH2), 2.79 (1H, d, 74.8 Hz, CHCH(CH3)2), 1.97-1.93 (1H, m, CH(CH3)2), 1.41 (9H, s, t-butyl), 1.29 (3H, d, /8.7 Hz, CH3), 0.81 (31-1, d, 14.4 Hz, CH(CH3)2), 0.78 (3H, d, /4.4 Hz, CH(CH3)2); 6, (62.5 MHz, CDCl3) 174.0, 140.8, 128.8, 128.1, 127.7, 125.9, 82.7, 67.6, 66.9, 64.6, 48.4, 31.8, 28.4, 20.0, 19.2, 18.2; mIz (CL, NH3), 365 (MH+, 52%), 339 (29%). 333 (76%), 291 (28%), 277 (100%) and 263 (10%); HRMS for C20H33N2O4 requires 365.2432. found 365.2430. [α]D 20−80.2 (c 0.98 CHCl3).
  • Potassium N-benzylidenyl-(S)-valinate
  • Figure US20120190816A9-20120726-C00051
  • To a solution of potassium hydroxide (958 mg, 17.10 mmol) in methanol (15 mL) was added L-valine (2.00 g, 17.10 mmol). The resulting solution was stirred under nitrogen for 3 hours. The solvent was removed in vacuo before benzaldehyde (2.61 mL, 25.70 mmol 2.0 equiv.) in anhydrous pentane (30 mL) was added and the mixture was azeotropic distillated under nitrogen for 8 hours. The precipitate was collected and dried in high vacuo to furnish the title compound as a white solid (3.85 g, 93%), V(max) (KBr) 2956 (C—H), 1594 (C═O) cm″1; δH(250 MHz, OMSO-d). 8.19 (1H, s, CH═N), 7.75-7.71 (2H, m, Ph×2), 7.44-7.40 (3H, m, Ph×3), 3.26 (1H, d, J 7.24, CHCH(CH3)2), 2.21 (1H, m, CHCH(CH3)2), 0.86 (3H, d, J 6.72 Hz, CHCH(CH3)2×3), 0.79 (31-1, d, /6.72 Hz, CHCH(CH3)2×3); 6, (62.5 MHz, DMSO-d) 174.7, 159.0, 137.1, 130.3, 128.8, 128.1, 84.8, 31.4, 20.8, 19.5.
  • N—[N-Fmoc-(S)-alanyl)]-3(S′)-isopropyl-5(R,S)-phenyl oxazolidinone
  • Figure US20120190816A9-20120726-C00052
  • To the stirring suspension of potassium N-benzylidenyl-5-valinate (122 mg, 0.50 mmol) in anhydrous dichloromethane (20 mL) was added Fmoc-L-alanine acid chloride (166 mg, 0.50 mmol) under nitrogen at 0° C. The resulting mixture was stirred for 4 hours at 0° C. and for another 12 hours at room temperature. The solvent was removed in vacuo and the crude product was purified by flash column chromatography on silica, eluting with petrol:diethyl ether (1:1) to furnish the title compound as fine colourless needles (174 mg, 70%); m.p. 69.0-71.5° C.; v(maX) (KBr) 3400 (N—H), 2966 (C—H), 1802 (C═O, lactone), 1718 (C═O, carbamate), 1674 (C═O, amide) cm1; δH (250 MHz, OMSO-d) 7.70-7.17 (13H, m, Fmoc×8 and Ph×5), 6.45-6.43 (0.3H, m, PhCH×0.3), 5.36-5.28 (0.7H, m, PhCH×0.7), 4.64-4.47 (1H, m, CHCH3×0.7 and CHCH(CH3)2×0.3), 4.47-4.09 (3H, m, CHCH2), 4.01-3.82 (1H, m, CHCH3×0.3 and CHCH(CH3)2×0.7), 2.83-2.55 (0.3H, m, CH(C1-13)2×0.3), 2.20-2.05 (0.7H, m, CH(CH3)2×0.7), 1.43-1.40 (3H, m, CHCH3), 1.26-1.13 (3H, m, CH(CHs)2×3) 1.02-0.91 (3H, m, CH(CH3)2×3), 0.87-0.80 (3H, m, CHCH3); δc (62.5 MHz, CDCl3) 177.5, 171.3, 169.5, 166.1, 156.0, 144.1, 141.7, 136.3, 131.7, 130.6, 130.2, 129.1, 128.2, 127.5, 127.0, 125.5, 120.4, 91.5, 70.2, 67.5, 61.8, 49.3, 47.5, 46.2, 34.2, 31.1, 30.7, 19.3, 18.9, 18.3, 17.7, 16.7; % (Cl, NH3), 498 (M+, 35%), 476 (47%), 463 (44%), 425 (23%), and 413 (100%); HRMS for C30H30N2O5 requires 498.2155. found 498.2151.
  • t-Butyl Fmoc-(S)-ala-(S)-val-(S)-alanate (79)
  • Figure US20120190816A9-20120726-C00053
  • To a solution of L-alanine tert-butyl ester (114 mg, 0.78 mmol, 3.0 equiv.) in anhydrous dichloromethane (10 mL) was added trimethyl aluminium (0.46 mL, 0.91 mmol, 2 M in hexane, 3.5 equiv.) under an atmosphere of nitrogen. After 15 minutes, N—[N-Fmoc-(S)-alanyl)]-3(S)-wopropyl-5(R,S)-phenyl oxazolidinone (130 mg, 0.26 mmol) in anhydrous dichloromethane (5 mL) was added. The resulting solution was stirred at room temperature for 24 hours. The reaction was quenched by the addition of saturated copper sulphate (20 mL) and the mixture was extracted with diethyl ether (3×20 mL). The combined organic extracts were dried over MgSO4. The solvents were removed in vacuo and the crude product was purified by flash column chromatography on silica, eluting with petrol:diethyl ether (1:9) to furnish the title compound as fine colourless needles (76 mg. 54%); mp 153.0-155.0° C.; v(max) (KBr) 3292 (N—H), 2974 (C—H), 1734 (C═O, ester), 1696 (C═O, carbamate), 1645 (C═O, amide) cm″1; δH (250 MHz, DMSO-d) 8.37 (0.5H, d, /6.42 Hz, NH), 8.18 (0.5H, d, /6.81 Hz, NH), 7.95 (0.5H, d, J 7.56 Hz, NH×0.5), 7.63 (0.5H, d, /7.48 Hz, NH×0.5), 7.96-7.35 (8H, m, Fmoc), 4.31-4.13 (5H, m, CHCH3×2 and CHCH2), 2.03 (1H, q, /6.57 Hz, CH(CH3)2), 1.42 (9H, s, f-butyl), 1.28-1.25 (6H, m, 2×CH3) 0.94-0.85 (6H, m, CH(CHb)2); δc (62.5 MHz, DMSO-J) 173.1, 172.6, 171.9, 170.8, 156.1, 144.1 141.1, 128.0, 127.4, 125.6, 120.5, 80.7, 66.0, 57.4, 57.0, 50.4, 48.7, 47.0, 31.5, 31.0, 30.8, 27.9, 19.5, 18.7, 18.3, 17.9, 17.4, 17.2; mIz (CL. NH3). 537 (M+, 12%), 502 (100%), 464 (50%), 426 (21%), and 414 (86%); FIRMS for C30H39N3O6 requires 537.2829. found 537.2836. [α]D 20−6.2 (c 0.57 CHCl3).
  • N—[N-Fmoc-(S)-valinyl)]-3 (S)-isopropyl-5 (R,S)-phenyl oxazolidinone
  • Figure US20120190816A9-20120726-C00054
  • To the stirring suspension of potassium N-benzylidenyl-(5)-valinate (123 mg, 0.46 mmol) in anhydrous dichloromethane (20 mL) was added Fmoc-L-valine acid chloride (164 mg, 0.46 mmol) under nitrogen at 0° C. The resulting mixture was stirred for 4 hours at 0° C. and for another 12 hours at room temperature. The solvent was removed in vacuo and the crude product was purified by flash column chromatography on silica, eluting with petrol:diethyl ether (3:2) to furnish the title compound as fine colourless needles (183 mg. 75%); mp 76.0-78.0° C.; v(max) (KBr) 3326 (N—H), 2966 (C—H), 1802 (C═O, lactone), 1722 (C═O, carbamate), 1663 (C═O, amide) cm″1; δH (250 MHz, DMSO-d) 7.81-7.11 (14H, m. NH×1, Fmoc×8 and Ph×5), 6.4 (0.5H, s, PhCH×0.5), 4.98 (0.5H, s. PhCH×0.5), 4.48-4.76 (5H, m, CHCH(CH3)2×2 and CHCH2×3), 2.57-2.54 (1H, m, CH(CH3)2), 2.24-2.10 (1H, m, CH(CHs)2), 1.28-0.63 (12H, m, CH(CH3)2×2); δc (62.5 MHz, DMSO-d) 170.3, 170, 169.7, 156.9, 144.1, 141.0, 137.5, 130.9, 129.9, 129.5, 128.5, 128.0, 127.7, 127.4, 125.8, 120.5, 90.6, 66.2 61.3, 60.9, 58.3, 46.9, 34.7, 32.6, 30.8, 30.3, 19.7, 18.7, 18.3, 17.2, 16.7, 16.4; % (CL, NH3), 526 (M+, 10%), 331 (40%), 230 (7%) and 178 (100%); HRMS for C32H34N2O5 requires 526.2459. found 526.2466.
  • Tri-L-alanine
  • Figure US20120190816A9-20120726-C00055
  • To a solution of N-Fmoc-(S)-alanyl-N-((1R)-phenyl-2-hydroxylethyl)-(S)-alanyl-(S)-alanine tert-butyl ester (235 mg, 0.37 mmol) and tert-butanol (0.12 mL, 1.20 mmol, 3.0 equiv.) in liquid ammonia (15 mL) and anhydrous tetrahydrofuran (10 mL) was added lithium (23 mg, 3.70 mmol, 10.0 equiv.) at −78° C. under an atmosphere of nitrogen. The resulting solution was stirred until the blue colour was disappeared and then warmed to room temperature to evaporate all the liquid ammonia. A mixture of water (15 mL) and diethyl ether (10 mL) was added and the aqueous phase was extracted with diethyl ether (3×10 mL). Water was removed in vacuo and the crude product purified first by acidic ion exchange chromatography and then by flash column chromatography on silica, eluting with methanol and water (7:3) to furnish the title compound as fine colourless needles (71 mg, 84%), v(max) (KBr) 3276 (N—H), 2985 (C—H), 1645 (C═O), 1592 (C═O), 1531 (C═O) cm″1; δH (250 MHz, D2O), 4.53 (1H, q, /9.37, CH), 4.03 (2H, q, /7.22 Hz, CH×2), 1.23 (3H, d, J 7.14, CH3), 1.09 (3H, d, J 7.21, CH3), 1.02 (3H, d, /7.24 Hz, CH3); δc (62.5 MHz, D2O) 180.1, 173.9, 170.9, 51.3, 50.1, 49.2, 17.7, 16.9, 16.7; mIz (CL, NH3), 231 (M+, 40%), 230 (100%), and 228 (35%); HRMS for C9H17H3O4 requires 231.1215 found 231.1209; [α]D 20−72.8 (c 1.01 H2O) (commercial one [α]D2j0n−73.2 (c 1.02 H2O)).
  • (5S)-3-Methyl-5-phenyl-5,6-dihydro-2H-1,4-oxazin-2-one(35)61
  • Figure US20120190816A9-20120726-C00056
  • (S)-2-phenylglycinol (3.00 g, 21.9 mmol, 1.0 equiv.) (34) and ethyl pyruvate (2.67 mL, 24.1 mmol, 1.1 equiv.) were refluxed in trifluoroethanol (50 mL) over activated 4 molecular sieves (8.00 g) for 24 hours. Filtration through a short pad of Celite® and removal of solvent from the filtrate in vacuo delivered the crude product which was purified by flash column chromatography on silica, eluting with petrol and diethyl ether (7:3) to furnish the title compound as a white solid (1.83 g, 44%); m.p. 70.0-71.0° C. (lit 71.0-72.0° C.)64; v(max)(KBr) 3007 (C—H), 1735 (C═O), 1640 (C═N) cm 1; δH (250 MHz, CDCl3) 7.45-7.32 (5H, m, Ph), 4.88-4.81 (1H, m, PhCH), 4.56 (1H, dd, J 4.49 Hz, T 9.48 Hz, 6β-H), 4.25 (1H, dd 13.01 Hz, r 14.99 Hz, 6α-H), 2.41 (3H, s, CH3); δc (62.5 MHz, CDCl3) 160.7, 155.9, 137.2, 129.4, 128.7, 127.5, 71.9, 60.1, 22.2; % (CL, NH3), 189 (M+, 25%), 159 (12%), 130 (24%), 104 (100%), 90 (21%), and 78 (6%); HRMS for C11H11NO2 requires 189.0787 found 189.0782. [α]D 20+253.0 (c 0.98 CHCl3) (the enantiomer lit. [α]D 20−237.1 (c 1.11 CHCl3))61.
  • (3R,5£)-3-Methyl-5-phenyl-3,4,5,6-tetrahydro-2H-1,4˜oxazin-2-one (36)61
  • Figure US20120190816A9-20120726-C00057
  • To a solution of (5S)-3-methyl-5-phenyl-5,6-dihydro-2H-1,4-oxazin-2-one (35) (1.70 g, 9.0 mmol, 1.0 equiv.) in anhydrous dichloromethane (60 mL) under an atmosphere of nitrogen was added PtO2 (170 mg, 0.1 equiv.). The mixture was consecutively degassed and purged three times with hydrogen and then stirred for 5 hours under an atmosphere of hydrogen. Filtration through a short pad of Celite® and removal of solvent from the filtrate in vacuo yielded the crude product which was purified by recrystallization from dichloromethane, diethyl ether and hexane to furnish the title compound as a colourless needles (1.26 g, 74%); m.p. 81.0-82.0° C. (lit. m.p. 81.0-82.0° C.)61; V(max) (KBr) 3314 (N—H), 2981 (C—H), 1736 (C═O), cm″1; δH (250 MHz, CDCl3) 7.43-7.26 (5H, m, Ph),; 4.42-4.23 (3H, m, CHCH2), 3.88 (1H, q, /6.76 Hz, CHCH3), 1.80 (1H, br, NH), 1.50 (3H, d, J 6.76 Hz, CH3); 8, (62.5 MHz, CDCl3) 170.7, 138.1, 129.3, 129.1, 127.5, 75.4, 58.2, 55.4, 19.0; mIz (CL, NH3), 192 (MH+, 30%), 147 (68%), 132 (64%), 104 (100%), and 91 (10%); HRMS for C11H13NO2 requires 192.1025 found 192.1019. [α]D 20+88.8 (c 0.96 CHCl3) (lit. [α] D 20+92.3 (c 0.84 CHCl3))61.
  • (3R,5S)—N—[N-Fmoc-(S)alanyl]-3-methyl-5-phenyl-3,4,5,6,-tetrahydro-2H-1,4-oxazin-2-one (37)
  • Figure US20120190816A9-20120726-C00058
  • To a vigorously stirred mixture of (3R,5S)-3-methyl-5-phenyl-3,4,5,6-tetrahydro-2H-1,4-oxazin-2-one (36) (500 mg. 2.62 mmol), Na2CO3 (1.40 g, 13.3 mmol, 5.0 equiv.) in 1:1 dichloromethane and water (40 mL) was added N-Fmoc-L-alanine acid chloride (1.04 g, 3.14 mmol, 1.2 equiv.) in dichloromethane (10 mL) dropwise over 5 min. The resulting solution was stirred for 2 hours. The aqueous phase was extracted with dichloromethane (3×15 mL). The combined extracts were washed with saturated Na2CO3 (50 mL), water (2×30 mL), brine (50 mL) and dried over MgSO4. The solvents were removed in vacuo and the crude material was purified by flash column chromatography on silica, eluting with petrol and diethyl ether (1:4) to furnish the title compound as fine colourless needles (1.02 g, 80%); m.p. 87-88° C.; v(max) (KBr) 3323 (N—H), 2982 (C—H), 1761 (C═O, lactone), 1717 (C═O, carbamate), 1656 (C═O, amide) cm″1; δH (400 MHz, DMSO-J, 110° C.) 7.84-7.29 (13H, m, Fmoc×8, Ph×5), 7.08 (1H, br, NH), 5.54 (1H, t, /5.88 Hz, PhCH), 4.96 (1H, q, /7.11 Hz, NCHCH3); 4.68-4.60 (2H, m, PhCHCH2), 4.41-4.32 (3H, m, CHCH3NH×1, OCH2CH×2), 4.22 (1H, t, /6.72 Hz OCH2CH), 1.45 (3H, d, /7.15 Hz5 NCHCH3), 1.08 (3H, d, /6.71 Hz, CHCH3NH); 8, (62.5 MHz, OMSO-d) 174.0, 172.8, 170.4, 169.6, 156.3, 144.1, 141.1, 137.7, 129.4, 128.7, 128.0, 127.4, 127.3, 127.1, 125.6, 120.5, 68.8, 66.0, 55.5, 55.3, 52.2, 51.4, 50.0, 47.2, 20.5, 18.6, 17.7, 17.1; ′7Z (C.I., NH3), 485 (MH+, 12%), 431 (8%), 381 (7%), 281 (15%) and 149 (100%); HRMS for C29H29N2O5 requires 485.2069. found 485.2076; [α]D 20+22.2 (c 0.94 CHCl3).
  • N-Fmoc-(S)-alanyl-N-((1S)-phenyl-2-hydroxylethyl)-(R)-alanyl-(S)-alanine tert-butyl ester (71)48
  • Figure US20120190816A9-20120726-C00059
  • To a solution of L-alanine tert-butyl ester (66) (251 mg, 1.73 mmol, 3.0 equiv.) in anhydrous dichloromethane (25 mL) was added trimethyl aluminium (2.03 mL, 2.03 mmol, 2 M in hexane. 3.5 equiv.) under an atmosphere of nitrogen. After 15 minutes, (3R,5S)-[N4N-Fmoc-(S)alanyl]-3-methyl-5-phenyl-3,4,5,6,-tetrahydro-2H-1,4-oxazin-2-one (37) (280 mg, 0.58 mmol) in anhydrous dichloromethane (8 mL) was added. The resulting solution was stirred at room temperature for 24 hours. The reaction was quenched by the addition of water (7 mL) and the organic phase was then washed with saturated copper sulphate (15 mL). The aqueous phase was extracted with diethyl ether (3×20 mL) and the combined organic extracts were dried over MgSO4. The solvent was removed in vacuo and the crude product was purified by flash column chromatography on silica, eluting with petrol and diethyl ether (1:4) to furnish the title compound as fine colourless needles (226 mg, 62%); m.p. 87-88° C.; v(max) (KBr) 3410 (O—H), 2980 (C—H), 1727 (C═O), 1654 (C═O) cm1; δH (250 MHz, OMSO-d), 8.35 (0.5H, d, /6.18 Hz, NH) 7.91-7.12 (13H, m, Fmoc×8 and Ph×5). 7.65 (0.5H, d, /7.14 Hz, NH), 7.55 (0.5171, d, /7.32 Hz, NH), 6.39 (0.5H, d, /7.45 Hz, NH), 5.21-5.18 (0.5H, m, PhCH), 5.03-5.01 (0.5H, m. PhCH), 4.94-4.92 (0.5H, m, NHCHCH3), 4.80-4.78 (0.5H, m, NHCHCH3), 4.65-4.62 (0.5H, m, NCHCH3), 4.27-4.18 (3.5H, m, OCH2CH, and CH2OH×0.5), 4.09-3.93 (2.5H, m, CH2OH×1.5 and NHCHCH3), 3.62-3.60 (0.5H, m, NCHCH3×1), 1.44-1.36 (13.5H, s, (CHa)3×9, CHCH3×4.5), 1.23 (1.5H, d, /6.63 Hz, CHCH3), 1.13 (1.5H, d, /7.35 Hz, CHCH3), 0.92 (1.5H, d, /7.07 Hz, CHCH3); δc (62.5 MHz, OMSO-d) 173.4, 172.9, 171.9, 171.6, 169.7, 156.0, 144.2, 144.1, 141.1, 137.2, 129.0, 128.3, 128.0, 127.7, 127.4, 127.3, 125.7, 120.5, 81.2, 80.8, 66.1, 61.6, 55.3, 53.6, 48.6, 48.3, 47.5, 47.0, 27.9, 18.5, 18.2, 17.7, 17.1, 15.4; % (CL, NH3), 775 (100%), 629 (M+, 36%), 457 (58%), 345 (27%), 231 (33%) and 178 (100%); HRMS for C36H43N3O7 requires 629.3092. found 629.3093; [α]D 20+14.20 (c 1.15 CHCl3).
  • LDL-alanine
  • Figure US20120190816A9-20120726-C00060
  • To a solution of N-Fmoc-(S)-alanyl-NOR)-phenyl-2-hydroxylethyl)-(R)-alanyl-(S)-alanine tert-butyl ester (235 mg. 0.37 mmol) and tert-butanol (0.12 mL, 1.20 mmol, 3.0 equiv.) in liquid ammonia (15 mL) and anhydrous tetrahydrofuran (10 mL) was added lithium (23 mg. 3.70 mmol, 10.0 equiv.) at −78° C.; under an atmosphere of nitrogen. The resulting solution was stirred until the blue colour disappeared and then allowed to warm to room temperature to evaporate off the liquid ammonia. A mixture of water (15 mL) and diethyl ether (10 mL) was added and the aqueous phase was extracted with diethyl ether (3×10 mL). Water was removed in vacuo and the crude product purified first by acidic ion exchange chromatography and then by flash column chromatography on silica, eluting with methanol and water (7:3) to furnish the title compound as fine colourless needles.
  • Figure US20120190816A9-20120726-C00061
  • To a solution of (3S,5R)—N—[N-Fmoc-(S)alanyl]-3-methyl-5-ρhenyl-3,4,5,6,-tetrahydro-2H-1,4-oxazin-2-one (33) (1.00 g, 2.06 mmol, 1.0 equiv.) in anhydrous tetrahydrofuran (40 mL) was added 1,8-diazabicyclo[5.4.0]-undec-7-ene (0.03 mL, 0.21 mmol, 0.1 equiv.) under an atmosphere of nitrogen. The resulting solution was stirred at room temperature for 3.5 hours before —N5N-diisopropylethylamine (0.40 mL, 2.26 mmol, 1.1 equiv.), N-Fmoc-L-alanine (0.76 g, 2.46 mmol, 1.2 equiv.) and bromotripyrrolidinophosphonium hexafluorophosphate (1.21 g, 2.46 mmol, 1.2 equiv.) were added. The resulting solution was stirred for another 18 hours during which time a white precipitate was formed. The mixture was filtered through a short pad of Celite® and removal of solvent from the filtrate in vacuo yielded the crude product which was purified by flash column chromatography on silica, eluting with dichloromethane and diethyl ether (3:7) to furnish the title product as a white powder (0.96 g, 86%); 100.0-101.0° C.; v(max) (KBr) 3311 (N—H), 2981 (C—H), 1741 (C═O), 1718 (C═O), 1647 (C═O) cm-1; δH (250 MHz, OMSO-d) 7.79 (1H, /6.70 Hz, NH), 7.68-7.07 (13H, m, Fmoc×8. Ph×5), 7.32 (1H, J 7.85 Hz, NH), 5.27 (1H, br, PhCH), 5.16-4.96 (1H, m, PhCHCH2×1), 5.16-4.96 (1H, m, PhCHCH2×1), 4.64-4.62 (1H, m, CHCH3), 4.55-4.51 (1H, m, CHCH3), 4.35-4.32 (1H, m, OCH2CH), 4.00 (2H, m, OCH2CH), 3.89-3.80 (1H, m, CHCH3), 0.98 (3H, d, J 3.92 Hz, CHCH3). 0.93 (3H, br, CHCH3), 0.62 (3H, d, /6.89 Hz, CHCH3); 6, (62.5 MHz, DMSO-d) 172.8, 171.6, 170.0, 156.0, 144.2, 141.1, 136.3, 128.9, 128.3, 128.0, 127.4, 126.8, 125.7, 120.4, 69.1, 66.0, 52.9, 50.6, 49.9, 47.0, 30.8, 20.9, 18.5, 17.8; % (CL, NH3). 231 (M+, 40%), 230 (100%), and 228 (35%); HRMS for C32H33N3O6 requires 555.2369 found 231.1209; [α]D 20−31.3 (c 0.90 CHCl3).
  • Figure US20120190816A9-20120726-C00062
  • To a solution of (3S,5R)—N—[N-Fmoc-(S)alanyl-(S)-alanine]-3-methyl-5-phenyl-3,4,5,6-tetrahydro-2H-1,4-oxazin-2-one (49) (114 mg. 0.206 mmol. 1.0 equiv.) in anhydrous tetrahydrofuran (5 mL) was added 1,8-diazabicyclo[5.4.0]-undec-7-ene (0.015 mL, 0.103 mmol, 0.5 equiv.) under an atmosphere of nitrogen. The resulting solution was stirred at room temperature for 5 hours before N,N-diwcpropylethylamine (0.026 mL, 0.144 mmol, 0.7 equiv.), N-Fmoc-L-alanine (76 mg, 0.246 mmol, 1.2 equiv.) and bromotripyrrolidinophosphonium hexafluorophosphate (0.121 g, 0.246 mmol, 1.2 equiv.) were added. The resulting solution was stirred for another 19 hours during which time a white precipitate was formed. The mixture was filtered through a short pad of Celite® and removal of solvent from the filtrate in vacuo yielded the crude product which was purified by flash column chromatography on silica, eluting with dichloromethane and acetone (7:3) to furnish the title product as a white powder. (89 mg, 68%); m.p. 118.0-120.0° C.; v(max) (KBr) 3316 (N—H), 2985 (C—H), 1738 (C═O), 1708 (C═O), 1647 (C═O) Cm″1; δH (250 MHz, DMSO—O 8.00 (1H, d, /7.28 Hz, NH), 7.91-7.30 (13H, m. Fmoc×8, Ph×5), 7.52 (1H, d, /7.58 Hz, NH), 5.48 (1H, br, PhCH). 5.32-5.02 (1H, m, PhCHCH2), 4.88-4.85 (1H, m, CHCH3), 4.74-4.69 (1H, m, CHCH3), 4.56 (1H, br, OCH2CH), 4.26-4.27 (2H, m, OCH2CH), 4.03 (1H, t, /7.25 Hz, CHCH3), 3.63-3.58 (0.5H, m, CHCH3), 3.14-3.12 (0.5H, m, CHCH3), 1.26-0.97 (12H, m, CHCH3×4); 8, (62.5 MHz, DMSO-d) 172.5, 172.2, 171.6, 170.0, 156.0, 144.2, 141.1, 136.5, 128.9, 128.3, 128.0, 127.4, 126.7, 125.7, 120.5, 65.9, 56.2, 53.9, 53.0, 47.9, 46.0, 42.2, 32.5, 31.0, 29.9, 18.5, 17.8, 17.1, 12.9; % (CL, NH3); FIRMS for C35H38N4O7 requires 626.2741 found; [α]D 2u-27.2 (c 1.04 acetone).
  • 1H-NMR data obtained for Tri-L-alanine made according to the invention with commercial tri-L-alanine was compared with excellent results.
  • While this invention has been particularly shown and described with references to preferred embodiments thereof, it will be understood by those skilled in the art that various changes in form and details may be made therein without departing from the scope of the invention encompassed by the appended claims.

Claims (13)

1. A process for nucleophilic substitution comprising substitution of an acceptor molecule comprising a group —X—C(O)— wherein X is O, S or NR8 with a nucleophile, wherein the acceptor molecule is cyclised, such that said nucleophilic substitution at —X—C(O)— occurs without racemisation, wherein the acceptor molecule is a compound of formula (II)
Figure US20120190816A9-20120726-C00063
wherein X is O, S, or NR8, where R8 is hydrogen, an aliphatic group or aromatic group;
R2 is independently selected from an aliphatic group or an aromatic group;
R3 is as defined for R2 or is hydrogen,
or a group
Figure US20120190816A9-20120726-C00064
or a group —C(R1′)(R9)—N(R10)(R11);
wherein R1′ is independently selected from an aliphatic or aromatic group;
wherein when Y is NR8, R8 and R1′ can together form an optionally substituted 4 to 7 membered ring, wherein said ring can be fully, partially or unsaturated, and wherein the ring may contain one or more additional heteroatoms selected from O, S or N;
R12 is hydrogen, an aliphatic group or aromatic group;
and R4′ is a carboxyl protecting group or hydrogen;
R9 and R10 are independently hydrogen or a group as defined for R1′;
or R9 and R10 or R10 and R11 can together form an optionally substituted 4 to 7 membered ring, wherein said ring can be fully, partially or unsaturated, and wherein the ring may contain one or more heteroatoms selected from O, S or N
R11 is hydrogen or an amino protecting group;
Y is O, S or NR8, where R8 is as defined above;
R5 is an aliphatic group, an aromatic group, a linker for attachment of formula (II) to a resin or a linked resin;
n is 1, 2 or 3 and m is a value selected from 1-100.
2. A process as claimed in claim 1 wherein the nucleophilic substitution occurs without epimerisation.
3. A process as claimed in claim 2, wherein said process is carboxy terminal extension of the acceptor molecule.
4. A process for the production of a compound of formula (I)
Figure US20120190816A9-20120726-C00065
comprising reaction of a compound of formula (II)
Figure US20120190816A9-20120726-C00066
with a compound of formula (III)

HY—R7  (III)
wherein X is O, S, or NR8, where R8 is C1-16 alkyl, C6-12 aryl or hydrogen;
Y is O, S or NH;
R2 is independently selected from a C1-10 branched or straight chain alkyl group, C5-12 heteroaryl group or C6-12 aryl group, optionally substituted with OR13, SR13, N(R13)2, CO2R13, CON(R13)2, SO2R12, SO3R12, phenyl, imidazolyl, indolyl, hydroxyphenyl or NR13C(═NR13)N(R13)2;
R3 is as defined for R2 or is hydrogen,
or a group
Figure US20120190816A9-20120726-C00067
or a group —C(R1′)(R9)—N(R10)(R11);
wherein R1′ is hydrogen or as defined from R1 below;
Y is as defined above and R4′ is as defined for R4 below;
R12 is hydrogen, C1-6 alkyl, C6-12 aryl or N(R13)2, wherein each occurrence of R13 is independently hydrogen, C1-6 alkyl or C6-12 aryl,
R9 and R10 are independently hydrogen or a group as defined for R1′;
or R9 and R10 can together form a 4 to 7 membered ring, optionally substituted with CO2R13, OR13, SR13, N(R13)2, CO2R13, CON(R13)2, C1-10 alkyl or C6-12 aryl, wherein said ring can be fully, partially or unsaturated, and wherein the ring may contain one or more heteroatoms selected from O, S or N;
R11 is hydrogen or an amino protecting group preferably selected from a benzyloxycarbonyl group, a t-butoxycarbonyl group, a 2-(4-biphenylyl)-isopropoxycarbonyl group, a fluorenylmethoxycarbonyl group, a triphenylmethyl group and/or a 2-nitrophenylsulphenyl group;
R5 is a C5-12 aryl, C5-12 heteroaryl or C1-8 branched or straight chain alkyl optionally substituted with OR13, SR13, N(R13)2, CO2R13, CO N(R13)2, phenyl, imidazolyl, indolyl, hydroxyphenyl or NR13C(═NR13)N(R13)2 or a linker for attachment of formula (II) to a resin;
R6 is hydrogen or
Figure US20120190816A9-20120726-C00068
wherein R5 and X are as defined above;
R7 is a group
Figure US20120190816A9-20120726-C00069
or is independently selected from a C1-10 branched or straight chain alkyl group or a C6-12 aryl group, optionally substituted with OR13, SR13, N(R13)2, CO2R13, CON(R13)2, SO2R12, SO3R12, phenyl, imidazolyl, indolyl, hydroxyphenyl or NR13C(═NR13)N(R13)2 or wherein R7 and Y together form a 4 to 7 membered ring, optionally substituted with OR13, SR13, N(R13)2, CO2R13, CON(R13)2, SO2R12, SO3R12, phenyl, imidazolyl, indolyl, hydroxyphenyl or NR13C(═NR13)N(R13)2, wherein said ring can be fully, partially or unsaturated, and wherein the ring may contain one or more heteroatoms in addition to Y, selected from O, S or N; wherein R1 is independently selected from a C1-10 branched or straight chain alkyl group, C5-12 heteroaryl group or C6-12 aryl group optionally substituted with OR13, SR13, N(R13)2, CO2R13, CON(R13)2, SO2R12, SO3R12, phenyl, imidazolyl, indolyl, hydroxyphenyl or NR13C(═NR13)N(R13)2;
and R4 is a carboxyl protecting group or hydrogen;
n is 1, 2 or 3 and m is a value selected from 1-100.
5. A process as claimed in claim 4 wherein R1 and R2 are independently selected from C1 alkyl optionally substituted with OH, SH, CO2H, CONH2, phenyl, imidazolyl, indolyl or hydroxyphenyl; C2 alkyl optionally substituted with OH, CO2H, CONH2 or SCH3; C3 alkyl NHC(═NH)NH2 or C4 alkyl optionally substituted with NH2.
6. A compound of formula (II)
Figure US20120190816A9-20120726-C00070
R2 is independently selected from a C1-10 branched or straight chain alkyl group, C5-12 heteroaryl group or C6-12 aryl group, optionally substituted with OR13, SR13, N(R13)2, CO2R13, CON(R13)2, SO2R12, SO3R12, phenyl, imidazolyl, indolyl, hydroxyphenyl or NR13C(═NR13)N(R13)2;
R3 is as defined for R2 or is hydrogen,
or a group
Figure US20120190816A9-20120726-C00071
or a group —[Y—C(═R1′)—C(O)]m—;
or a group —C(R1′)(R9)—N(R10)(R11);
or a group —C(═R1′)—N(R10)(R11);
wherein R1′ is independently selected from a C1-10 branched or straight chain alkyl group, C5-12 heteroaryl group or C6-12 aryl group optionally substituted with OR13, SR13, N(R13)2, CO2R13, CON(R13)2, SO2R12, SO3R12, phenyl, imidazolyl, indolyl, hydroxyphenyl or NR13C(═NR13)N(R13)2;
wherein when Y is NR8, where R8 is C1-6 alkyl, C6-12 aryl or hydrogen, R8 and R1′ can together form a 4 to 7 membered ring, optionally substituted with CO2R13, OR13, SR13, N(R13)2, CO2R13, CON(R13)2, C1-10 alkyl or C6-12 aryl, wherein said ring can be fully, partially or unsaturated, and wherein the ring may contain one or more heteroatoms selected from O, S or N;
R12 is hydrogen, C1-6 alkyl, C6-12 aryl or N(R13)2, wherein each occurrence of R13 is independently hydrogen, C1-6 alkyl or C6-12 aryl,
R9 and R10 are independently hydrogen or a group as defined for R1′;
or R9 and R10 can together form a 4 to 7 membered ring, optionally substituted with CO2R13, OR13, SR13, N(R13)2, CO2R13, CON(R13)2, C1-10 alkyl or C6-12 aryl, wherein said ring can be fully, partially or unsaturated, and wherein the ring may contain one or more heteroatoms selected from O, S or N;
R11 is hydrogen or an amino protecting group preferably selected from a benzyloxycarbonyl group, a t-butoxycarbonyl group, a 2-(4-biphenylyl)-isopropoxycarbonyl group, a fluorenylmethoxycarbonyl group, a triphenylmethyl group and/or a 2-nitrophenylsulphenyl group;
R1′ is independently selected from C1-10 branched or straight chain alkyl optionally substituted with OR13, SR13, N(R13)2, CO2R13, CO N(R13)2, phenyl, imidazoyl, indolyl, hydroxyphenyl or NR13C(═NR13)N(R13)2 and R4′ is a carboxyl protecting group or hydrogen, m is 1-100; and
R5 is a linker for attachment of formula (II) to a resin or C6-12 aryl, C5-12 heteroaryl or C1-8 branched or straight chain alkyl optionally substituted with OR13, SR13, N(R13)2, CO2R13, CO N(R13)2, phenyl, imidazolyl, indolyl, hydroxyphenyl or NR13C(═NR13)N(R13)2;
wherein when X is O or S, n is 1, 2 or 3; or
when X is NR8, where R8 is C1-6 alkyl, C6-12 aryl or hydrogen, n is 2 or 3; and wherein
when X═O, and R5 is phenyl, n is not 1.
7. A process for the formation of a compound of formula (II), as defined in claim 6,
Figure US20120190816A9-20120726-C00072
by the reaction of a compound of formula (IV)
Figure US20120190816A9-20120726-C00073
with a compound of formula (V)
Figure US20120190816A9-20120726-C00074
wherein Z is any substituent capable of being involved in peptide bond formation and R2, R3, R5, X and n are as defined above in claim 6.
8. A process for the production of a compound of formula (VI) as defined in claim 7,
Figure US20120190816A9-20120726-C00075
from formula (I)
Figure US20120190816A9-20120726-C00076
by the removal of R6 wherein X, Y, R2, R3, R6 and R7 are as defined above in claim 7.
9. A process as claimed in claim 8 wherein R5 is a linked resin and the process is carried out on solid phase.
10. A process as claimed in claim 8 wherein the process is carried out in solution.
11. A compound of formula (VII);
Figure US20120190816A9-20120726-C00077
wherein m is an integer of 1 to 50, and R1′, R2, R5, R9, R10, R11, X and n are as defined in claim 4.
12. A compound of formula (VIII);
Figure US20120190816A9-20120726-C00078
wherein R1′, R2, R5, R9, X, m and n are as defined in claim 4.
13. A compound of formula (XI)
Figure US20120190816A9-20120726-C00079
wherein R1′, R2, R9, X and m are as defined in claim 4.
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