US20070238675A1 - Stem Cell Beacon - Google Patents

Stem Cell Beacon Download PDF

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US20070238675A1
US20070238675A1 US10/567,275 US56727504A US2007238675A1 US 20070238675 A1 US20070238675 A1 US 20070238675A1 US 56727504 A US56727504 A US 56727504A US 2007238675 A1 US2007238675 A1 US 2007238675A1
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M. Phillips
Yao Tang
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University of South Florida
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    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K48/00Medicinal preparations containing genetic material which is inserted into cells of the living body to treat genetic diseases; Gene therapy
    • A61K48/005Medicinal preparations containing genetic material which is inserted into cells of the living body to treat genetic diseases; Gene therapy characterised by an aspect of the 'active' part of the composition delivered, i.e. the nucleic acid delivered
    • A61K48/0058Nucleic acids adapted for tissue specific expression, e.g. having tissue specific promoters as part of a contruct
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    • A61P3/00Drugs for disorders of the metabolism
    • A61P3/08Drugs for disorders of the metabolism for glucose homeostasis
    • A61P3/10Drugs for disorders of the metabolism for glucose homeostasis for hyperglycaemia, e.g. antidiabetics
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    • A61P9/00Drugs for disorders of the cardiovascular system
    • A61P9/10Drugs for disorders of the cardiovascular system for treating ischaemic or atherosclerotic diseases, e.g. antianginal drugs, coronary vasodilators, drugs for myocardial infarction, retinopathy, cerebrovascula insufficiency, renal arteriosclerosis
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
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    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/63Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
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    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/63Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
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    • C12N5/00Undifferentiated human, animal or plant cells, e.g. cell lines; Tissues; Cultivation or maintenance thereof; Culture media therefor
    • C12N5/06Animal cells or tissues; Human cells or tissues
    • C12N5/0602Vertebrate cells
    • C12N5/0652Cells of skeletal and connective tissues; Mesenchyme
    • C12N5/0662Stem cells
    • C12N5/0663Bone marrow mesenchymal stem cells (BM-MSC)
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K35/00Medicinal preparations containing materials or reaction products thereof with undetermined constitution
    • A61K35/12Materials from mammals; Compositions comprising non-specified tissues or cells; Compositions comprising non-embryonic stem cells; Genetically modified cells
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    • C12N2750/00011Details
    • C12N2750/14011Parvoviridae
    • C12N2750/14111Dependovirus, e.g. adenoassociated viruses
    • C12N2750/14141Use of virus, viral particle or viral elements as a vector
    • C12N2750/14143Use of virus, viral particle or viral elements as a vector viral genome or elements thereof as genetic vector
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    • C12N2830/00Vector systems having a special element relevant for transcription
    • C12N2830/001Vector systems having a special element relevant for transcription controllable enhancer/promoter combination
    • C12N2830/002Vector systems having a special element relevant for transcription controllable enhancer/promoter combination inducible enhancer/promoter combination, e.g. hypoxia, iron, transcription factor
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    • C12N2830/00Vector systems having a special element relevant for transcription
    • C12N2830/80Vector systems having a special element relevant for transcription from vertebrates
    • C12N2830/85Vector systems having a special element relevant for transcription from vertebrates mammalian

Definitions

  • the invention relates to the fields of molecular biology, gene therapy, and medicine. More particularly, the invention relates to compositions and methods for delivering and amplifying expression of a gene encoding a stem cell-attracting chemokine in a specific tissue.
  • the invention relates to methods and compositions for selectively directing stem cells to a target tissue within a subject using a system that employs one or more vectors that contain a gene switch/biosensor, a tissue-specific promoter, a gene encoding a stem cell-attracting chemokine (e.g., stromal-derived factor (SDF)-1 ⁇ , stem cell factor (SCF)) and a gene amplification system.
  • a gene switch/biosensor allows expression of the chemokine-encoding gene to be regulated by a stimulus (e.g. a physiological stimulus such as one associated with cellular degeneration).
  • stem cell-attracting chemokine can be increased in response to a particular event (e.g., increase in glucose concentration, decrease in oxygen concentration and mechanical stretch in vessel wall of hypertension, etc.).
  • the high local concentrations of the stem cell-attracting chemokine will then cause stem cells to be recruited into and/or retained by the target tissue at a greater than normal rate.
  • the stem cells Once in the target tissue, the stem cells can differentiate (with or without the help of other agents such as morphogenesis) into new cells to replace the damaged cells and restore organ function.
  • FIG. 1 is a schematic illustration of a double plasmid model for stem cell beacon vector with a hypoxia switch.
  • the cardiac promoter controls an oxygen-sensitive transactivator.
  • the transactivator produces a fusion protein which binds to the inducible promoter and activates transcription of stem cell acting chemokine, SDF-1 ⁇ in the second plasmid.
  • the oxygen-sensitive chimeric transactivator (GAL4/ODD/p65) is expressed by the transactivator plasmid under the control of the MLC-2v promoter. It can accumulate under hypoxia and activate the inducible promoter containing the GAL4 upstream activation sequence (UAS) in the reporter plasmid.
  • UAS GAL4 upstream activation sequence
  • FIG. 2 is a photomicrograph showing the morphologic features of mice bone marrow Lin ⁇ c-kit + cells after labeling with PKH26.
  • the labeling efficiency of Lin ⁇ c-kit + cell was approximately 100%.
  • FIG. 3 is a Western blot analysis showing an increased amount of tissue-specific hSDF-1 ⁇ expression in the ischemic mouse heart tissue compared to hSDF-1 ⁇ in the spleen, liver, lung, kidney, and muscle at 1 week after plasmid injection.
  • FIGS. 4A and 4B are photomicrographs showing immunohistochemical localization of hSDF-1 protein in cross-section of papillary muscle level 7 days after vigilant hSD F-1 plasmid transfer. Expression of hSDF-1 could be seen in the peri-infarct zone of ischemic myocardium in vigilant hSDF-1 plasmid treated MI group ( FIG. 4A ) with less-hSDF-1 expression in vigilant treated non-MI group ( FIG. 4B ).
  • FIGS. 5A-5D are photomicrographs of ischemic myocardium.
  • FIG. 5B is a photomicrograph of a cross section of vigilant hSDF-1 ⁇ plasmid-treated ischemic myocardium. Ischemic cardiomyocytes in the peri-infarction zone expressed hSDF-1 ⁇ (large arrowheads). The transplanted Lin ⁇ c-kit + stem cells (small arrowheads) are clustered proximal to the hSDF-1 ⁇ positive zone. Cytoplasm was recognized by the red fluorescence of PKH26.
  • FIG. 5D is a confocal image (100 ⁇ ) of the same specimen as in FIG. 5C .
  • Ischemic cardiomyocytes express hSDF-1 ⁇ (large arrowhead).
  • the transplanted Lin ⁇ c-kit + stem cells (small arrowheads) surround the hSDF-1 ⁇ positive cardiomyocytes.
  • FIG. 5A is ischemic myocardium without vigilant hSDF-1 ⁇ plasmid treatment. Less hSDF-1 ⁇ was expressed in ischemic tissue and few PKH26-labeled stem cells were attracted to ischemic myocardium ( FIG. 5B ).
  • FIG. 6 shows the effect of myocardial ischemia on hypoxia-induced hSDF-1 protein expression in mouse heart.
  • the mouse heart underwent ischemia for one-half hour, 24 hours, 48 hours, 72 hours and 7 days.
  • the heart was analyzed for hSDF-1/6 ⁇ His protein expression.
  • GAPDH confirmed the integrity and equal loading of protein.
  • the time course of vigilant SDF-1 vector expression shows the hSDF-1 protein reached a peak in 24 hours after gene treatment. At 7 days, the expression of vigilant SDF-1 was stronger than endogenous SDF-1 expression.
  • Positive SDF control is SDF-1 plasmid that can constitutively express SDF-1.
  • FIGS. 7A-7D are photomicrographs showing that expression of hSDF-1 in ischemic myocardium mobilizes labeled Lin ⁇ c-Kit+ HSC cells (red) surrounding the cardiomyocytes's expression of hSDF-1 (green). It was observed that groups of cells were positively stained for hSDF-1, and attracted more HSC, around the site in the vigilant hSDF-1-treated MI group ( FIGS. 7B and 7D ), while less SDF-1 expression and few mobilized HSC could been seen in the medium-treated MI group ( FIGS. 7A and 7C ).
  • FIGS. 8A and 8B are bar graphs showing the infarci zone thickness ( FIG. 8A ) and infarct size (percentage) ( FIG. 8B ) in the ischemic myocardium shown in FIGS. 7A-7D , treated with vigilant hSDF-1 (VSDF-1+MI) and medium (MI; control).
  • LVSP LV systolic performance
  • LVDP diastolic performance
  • the invention provides a system for regenerating tissue by directing stem cells to a damaged organ.
  • the system involves delivering to a target tissue, vectors that express a stem cell-attracting chemokine in response to a stimulus that is present in injured but not healthy tissue.
  • the occurrence of a cell-injuring event thus results in production of the stem cell-attracting chemokine at the site of injury, and consequently increased trafficking of stem cells to the injured tissue. Differentiation of the stem cells at this site results in replacement of damaged cells with healthy cells—a process that results in organ regeneration.
  • the invention employs one or more vectors to express a stem cell-attracting chemokine in response to a stimulus that is present in injured, but not healthy, tissue.
  • a variety of different vectors might be used depending on the particular application.
  • a preferred system of the invention uses one or more vectors that contain a gene switch/biosensor, a tissue-specific promoter operably linked to a gene encoding a stem cell-attracting chemokine, and a gene amplification system.
  • the gene switch/biosensor allows transgene expression to be regulated by a stimulus (e.g., a physiological stimulus such as hypoxia or high glucose levels).
  • expression of the gene encoding a stem cell-attracting chemokine can be modulated in response to a particular event (e.g., infarction or onset of diabetes).
  • a particular event e.g., infarction or onset of diabetes.
  • the tissue-specific promoter allows preferential expression of the gene encoding the stem cell-attracting chemokine in a given target tissue, thereby avoiding expression in other tissues that might be harmful to the subject.
  • the gene amplification system allows a sufficient amount of the gene encoding a stem cell-attracting chemokine to be produced to cause a desired result (e.g., recruitment of stem cells to damaged tissue).
  • the gene switch/biosensor portion of the system can be any suitable construct that is activated in response to a stimulus associated with cell injury.
  • the gene switch/biosensor is a transactivator plasmid that includes a cardiac-specific promoter linked to a sequence encoding an oxygen-sensitive chimeric transactivator that includes a GAL4 DNA-binding domain (DBD), an oxygen-dependent degradation domain (ODD), and a p65 activation domain (p65 AD).
  • DBD GAL4 DNA-binding domain
  • ODD oxygen-dependent degradation domain
  • p65 AD p65 activation domain
  • the transactivator binds to the GAL4 UAS sequence in the reporter plasmid (which contains a gene encoding hSDF-1 ⁇ operably linked to a GAL4 UAS).
  • gene switch/biosensors include a glucose switch based on the Krebs cycle (e.g., glucose response element or other glucose regulated elements), a mechanical stretch switch based on an epithelial sodium channel (ENaC), and a hypoxia response element (HRE).
  • a glucose switch based on the Krebs cycle e.g., glucose response element or other glucose regulated elements
  • ENaC epithelial sodium channel
  • HRE hypoxia response element
  • the gene switch/biosensor portion of the system may include tissue-specific regulatory elements to direct tissue-specific expression of a stem cell-attracting chemokine gene.
  • tissue-specific regulatory elements to direct tissue-specific expression of a stem cell-attracting chemokine gene.
  • a number of cardiac-specific regulatory elements can be used.
  • An example of a cardiac-specific promoter is the ventricular form of MLC-2v promoter (see, Zhu et al., Mol. Cell Biol. 13:4432-4444, 1993; Navankasattusas et al., Mol. Cell Biol. 12:1469-1479, 1992) or a variant thereof such as a 281 bp fragment of the native MLC-2v promoter (nucleotides ⁇ 264 to +17, Genebank Accession No. U26708).
  • cardiac-specific promoters examples include alpha myosin heavy chain (Minamino et al., Circ. Res. 88:587-592, 2001) and myosin light chain-2 (Franz et al., Circ. Res. 73:629-638, 1993).
  • promoters that confer gene expression specific to tissues other than the heart may be used. Promoters that are kidney-specific include CLCN5 (Tanaka et al., Genomics 58:281-292, 1999), renin (Sinn et al., Physical Genomics 3:25-31, 2000), androgen-regulated protein, sodium-phosphate cotransporter, renal cytochrome P-450, parathyroid hormone receptor and kidney-specific cadherin. See Am. J. Physiol. Renal Physiol. 279:F383-392, 2000.
  • the E-cadherin promoter directs expression specific to epithelial cells (Behrens et al., PNAS 88:11495-11499, 1991) while the Estrogen receptor (ER) 3 gene promoter directs expression specifically to the breast epithelium (Hopp et al., J. Mammary Gland Biol. Neoplasia 3:73-83, 1998).
  • Endothelial cell gene promoters include endoglin and ICAM-2. See Velasco et al., Gene Ther. 8:897-904, 2001.
  • Liver-specific promoters include the human phenylalanine hydroxylase (PAH) gene promoters (Bristeau et al., Gene 274:283-291, 2001), hB1F (Zhang et al., Gene 273:239-249, 2001), and the human C-reactive protein (CRP) gene promoter (Ruther et al., Oncogene 8:87-93, 1993).
  • PAH human phenylalanine hydroxylase
  • CRP C-reactive protein
  • An example of a muscle-specific gene promoter is human enolase (ENO3). Peshavaria et al., Biochem. J. 292(Pt 3):701-704, 1993.
  • a number of brain-specific promoters may be useful in the invention and include the thy-1 antigen and gamma-enolase promoters (Vibert et al., Eur. J. Biochem. 181:33-39, 1989), the glial-specific glial fibrillary acidic protein (GFAP) gene promoter (Cortez et al., J. Neurosci. Res. 59:39-46, 2000), and the human FGF1 gene promoter (Chiu et al., Oncogene 19:6229-6239, 2000).
  • the GATA family of transcription factors have promoters directing neuronal and thymocyte-specific expression. See Asnagli et al., J. Immunol.
  • pancreas-specific promoter is the pancreas duodenum homeobox 1 (PDX-1) promoter. Samara et al., Mol. Cell Biol. 22:4702-4713, 2002.
  • the vectors of the invention include a gene encoding a stem-cell attracting chemokine.
  • Any such chemokine-encoding gene may be used in the invention.
  • genes such as SCF, vascular endothelial growth factor (VEGF), granulocyte colony-stimulating factor (G-CSF), and integrins may be used.
  • VEGF vascular endothelial growth factor
  • G-CSF granulocyte colony-stimulating factor
  • integrins may be used.
  • a preferred gene encoding a stem-cell attracting chemokine is one that encodes SDF-1 ⁇ , an alpha-chemokine for hematopoietic stem cells and endothelial progenitor cells.
  • the sequences of a number of different native mammalian SDF-1 ⁇ proteins are known, including human, rat, mouse, and cat.
  • the vector(s) of the invention features a gene amplification system that provides a high level of tissue-specific chemokine gene expression (tissue-specific promoters typically do not allow high levels of gene expression compared to non-tissue specific promoters such as the CMV promoter).
  • gene amplification is achieved using a dual plasmid system, wherein, in response to a signal, a transactivator plasmid is induced to express a transactivator complex that binds a regulatory element on a reporter plasmid to cause a high level of expression of the chemokine gene.
  • the vector(s) of the invention may also include other regulatory sequences including insulators, silencers, enhancers, initiation sites, internal ribosome entry site elements, termination signals and polyA tails.
  • Other regulatory sequences including insulators, silencers, enhancers, initiation sites, internal ribosome entry site elements, termination signals and polyA tails.
  • An example of a cardiac-specific enhancer is alpha BE-4. Gopal-Srivastava et al., 15:7081-7090, 1995.
  • the vector(s) of the invention may be delivered to target tissues in any suitable manner. Several methods are known. For example, as described in the Examples section below, plasmid vectors may simply be injected into a target tissue.
  • the nucleic acid constructs of the invention are introduced into viral vectors.
  • Viral vector methods and protocols are reviewed in Kay et al. Nature Medicine 7:33-40, 2001.
  • Preferred viral vectors for use in the invention are recombinant adeno-associated virus (AAV) vectors.
  • AAV adeno-associated virus
  • other viruses may be used to create vectors useful in the invention.
  • a list of such viruses include adenovirus (see, W. C.
  • herpes simplex virus see, Cotter and Robertson, Curr. Opin. Mol. Ther. 1:633-644, 1999
  • lentiviruses see, Vigna and Naldini, J. Gene Med. 5:308-316, 2000 and Miyoshi et al., J. Virol. 72:8150-8157, 1998)
  • retroviruses see Hu and Pathak, Pharmacol. Rev. 52:493-511, 2000 and Fong et al., Crit. Rev. Ther. Drug Carrier Syst. 17:1-60, 2000
  • others e.g., alphaviruses such as Semliki Forest Virus and Sindbis Virus.
  • exogenous nucleic acid constructs in cells in a target tissue can be monitored by conventional methods.
  • vector-transduced cells can be assessed by PCR, flow cytometry and immunochemistry.
  • Target Cells Tissues for Introduction of Vectors in vitro (ex vivo) or in vivo.
  • Cells genetically modified with the vectors of the invention can range in plasticity from totipotent or pluripotent stem cells (e.g., adult or embryonic), precursor or progenitor cells, to highly specialized cells, such as those of the central nervous system (e.g., neurons and glia), pancreas, heart, lung, and liver.
  • stem cells e.g., adult or embryonic
  • precursor or progenitor cells e.g., progenitor cells
  • highly specialized cells such as those of the central nervous system (e.g., neurons and glia), pancreas, heart, lung, and liver.
  • Stem cells can be obtained from a variety of sources, including embryonic tissue, fetal tissue, adult tissue, umbilical cord blood, peripheral blood, bone marrow, and brain, for example.
  • Stem Cells Scientific Progress and Future Research Directions, Appendix E1-E5
  • the list of adult tissues reported to contain stem cells is growing and includes bone marrow, peripheral blood, umbilical cord blood, brain, spinal cord, dental pulp, blood vessels, skeletal muscle, epithelia of the skin and digestive system, cornea, retina, liver, and pancreas.
  • Ex vivo delivery of cells transduced with rAAV vectors or infected with rAAV virus is provided for within the invention.
  • Stem cell-mediated ex vivo gene therapy may be used to transplant stimulus-responsive vector system-transduced host stem cells back into the host heart.
  • a suitable ex vivo protocol may include several steps.
  • Adult stem cells may be harvested from the host and any suitable delivery vector may be used to transduce a stimulus-responsive rAAV vector system into the host's own stem cells. These genetically modified cells may then be transplanted back into the host.
  • Several approaches may be used for the reintroduction of stem cells into the host, including jugular vein, tongue vein, intra-pericardial injection and intracardiac intravenous delivery (multiple epicardial puncture or endoventricular injection).
  • Microencapsulation of cells transduced or infected with a stimulus-responsive rAAV vector system modified ex vivo is another technique that may be used within the invention.
  • Autologous and allogeneic cell transplantation may be used according to the invention.
  • Any suitable delivery method may be used for transducing host stem cells or cardiac cells with a stimulus-responsive rAAV vector system ex vivo.
  • Several suitable modes of delivery are described above and include the following: microinjection, electroporation, calcium phosphate transfection, DEAE dextran transfection, polylysine conjugates, receptor-mediated uptake systems, liposomes, lipid-mediated delivery systems, matrix-impregnated delivery, microparticle encapsulation, intra-cellular targeting ligands, virion-like particles, and viruses.
  • the vectors described above are preferably administered to a mammal in an effective amount, that is, an amount capable of producing a desirable result in a treated subject (e.g., regeneration of myocardium in an infarcted heart).
  • an effective amount can be determined empirically using experimental animals to determine a dose that results in a desired level of stem cell recruitment to a target tissue. It is expected that an appropriate dosage for intravenous administration of plasmids would be in the range of about 1 ⁇ g to 1 mg per site. Different effective dose ranges will vary depending on the weight and bio-responses from the mammals used. These ranges are evident to one of ordinary skill in the art and are within the embodiments of the invention.
  • stem cells In conjunction with administration of the above described vector system to a target tissue, to enhance the number of stem cells that home to a target tissue in an animal subject, stem cells can be administered to an animal subject and/or an agent that increases the number of available endogenous stem cells can be administered to the subject.
  • Methods for producing stem cells for transplant are known. Any stem cells suitable for a particular application of the invention may be used. For instance, as described in the Examples section below, stem cells can be isolated from bone marrow according to expression of certain markers. In vitro culture methods can be used to expand the number of these cells.
  • Stem cells isolated, and optionally expanded, in this manner can be administered to an animal (e.g., by intravenous injection, direct delivery to the target tissue, or other suitable means) to increase the number of stem cells available to traffic to the target tissue.
  • the administered stem cells are preferably histocompatible with the host animal.
  • the number of stems cell administered to a given animal subject will depend on the individual situation (e.g., extent of tissue damage, type of tissue, size of animal, health of animal, etc.), but a therapeutic range is expected to be about 1 ⁇ 10 6 to about 1 ⁇ 10 10 cells.
  • stem cells occur naturally in animals, a step of exogenously administering stem cells to an animal subject is not strictly required (i.e., naturally occurring stem cells will traffic to the treated target tissue without need of an additional step).
  • the number of available naturally-occurring stem cells may be less than optimal to expedite regeneration of a target tissue.
  • the number of stem cells available in the peripheral blood can be increased by known methods. For example, the rate of stem cell movement from the bone marrow to the peripheral blood (i.e., “stem cell mobilization”) can be increased by administering to a subject an agent that causes a stem cell to mobilize from the bone marrow.
  • stem cell mobilization can be increased by administering to a subject an agent that causes a stem cell to mobilize from the bone marrow.
  • a number of such agents are known. See, e.g., those described in International Application WO 00/50048; and colony stimulating factors such as G-CSF.
  • bone marrow-derived stem cells are stem cells for various mesenchymal tissues.
  • the cells are therefore not simply stromal precursors, but precursors of peripheral tissues, such as heart muscle (Pittenger M F, Marshak D R. Stem Cell Biology, 949-973, 2001). Normal growth and ultimate stem cell fate depend on engraftment in an appropriate “niche”. The mechanism by which the local milieu influences stem cell differentiation is not yet determined.
  • Enhancement of functional activity of a specific organ's niche for heart muscle may promote and intensify the transdifferentiation of bone marrow-derived stem cells to a cardiomyocyte phenotype.
  • an injury e.g., myocardial infarction
  • specific factors including cytokines, stem cell factor, and various growth factors that stimulate cell replication and substitution in the injured tissue are released by surrounding cells.
  • transplanted stem cells differentiate to cardiomyocytes and begin to express the contractile proteins specific for striated heart muscle, including Desmin, ⁇ -myosin, heavy chain, ⁇ -Actinin, and phospholamban at levels that are the same as in the host cardiomyocytes. (Strauer B E, Kornowski R Circulation 107:929-934, 2003).
  • the vector system of the invention can be adapted to a particular disease state by using an appropriate tissue-specific promoter, an appropriate stimulus-responsive element, and appropriate stem cell attracting chemokine genes for regenerating damaged tissue associated with a particular disease state.
  • this system is employed to direct homing of stem cells to ischemic cardiac tissue.
  • the invention can be directed to treat diseases other than ischemia and to target stem cells to tissues other than the heart.
  • stem cells for replacing damaged pancreatic beta cells in a type 1 diabetic patient can be induced to home to the pancreas using, in conjunction with the above-described SDF-1 ⁇ -encoding reporter vector, a transactivator vector containing a pancreas-specific promoter and a glucose sensitive element, for example, in addition to the GAL4 DBD and p65 AD sequences.
  • the transactivator vector detects elevated glucose levels in response to degenerating beta cells; it expresses a chimeric transactivator protein specifically in the pancreas.
  • the transactivator protein then binds to the reporter vector and activates amplified expression of the gene encoding the stem cell-attracting chemokine causing stem cells to traffic to the pancreas.
  • glucose levels are decreased (i.e., when beta cells have been replaced) the system switches off.
  • the system is a regulated system which can be switched on or off as needed depending on the stimulus (i.e., decrease/increase in glucose or decrease/increase in oxygen).
  • the present invention overcomes the limitation of the present state of the art by being a homeostasis sensitive system and not a constitutively “turned-on” system described in the state of the art.
  • the stem cells recruited into the ischemic heart or damaged liver are anti-apoptotic which is important for tissue repair to replace damaged cells, i.e., are newly generated myocardiocytes or hepatocytes. These cells are natural to the host and do not become rejected or tumorigenic.
  • a reference to “a polynucleotide” includes more than one such polynucleotide.
  • a reference to “a nucleic acid sequence” includes more than one such sequence.
  • a reference to “a cell” includes more than one such cell.
  • polypeptide refers to any polymer comprising any number of amino acids, and is interchangeable with “protein”, “gene product”, and “peptide”.
  • a nucleic acid molecule can be isolated from a natural source, or it can be produced using recombinant DNA technology (e.g., polymerase chain reaction (PCR) amplification, cloning) or chemical synthesis.
  • Nucleic acid molecules can be generated or modified using a variety of techniques including, but not limited to, classic mutagenesis techniques and recombinant DNA techniques, such as site-directed mutagenesis, chemical treatment of a nucleic acid molecule to induce mutations, restriction enzyme cleavage of a nucleic acid fragment, ligation of nucleic acid fragments, polymerase chain reaction (PCR) amplification and/or mutagenesis of selected regions of a nucleic acid sequence, synthesis of oligonucleotide mixtures and ligation of mixture groups to “build” a mixture of nucleic acid molecules, and combinations thereof.
  • classic mutagenesis techniques such as site-directed mutagenesis
  • chemical treatment of a nucleic acid molecule such as site-directed mut
  • nucleic acid molecule (or “nucleotide molecule”) primarily refers to the physical nucleic acid molecule and the phrase “nucleic acid sequence” primarily refers to the sequence of nucleotides on the nucleic acid molecule, the two phrases can be used interchangeably.
  • a “coding” nucleic acid sequence refers to a nucleic acid sequence that encodes at least a portion of a polypeptide (e.g., a portion of an open reading frame), and can more particularly refer to a nucleic acid sequence encoding a polypeptide which, when operatively linked to a transcription control sequence (e.g., a promoter sequence), can express the polypeptide.
  • a transcription control sequence e.g., a promoter sequence
  • flanking sequence operably-linked or “operatively linked” is used herein to refer to an arrangement of flanking sequences wherein the flanking sequences so described are configured or assembled so as to perform their usual function.
  • a flanking sequence operably-linked to a coding sequence may be capable of effecting the replication, transcription and/or translation of the coding sequence.
  • a coding sequence is operably-linked to a promoter when the promoter is capable of directing transcription of that coding sequence.
  • a flanking sequence need not be contiguous with the coding sequence, so long as it functions correctly.
  • intervening untranslated yet transcribed sequences can be present between a promoter sequence and the coding sequence, and the promoter sequence can still be considered “operably-linked” to the coding sequence.
  • isolated means removal from its native environment, and can include removal from its immediate native environment.
  • differentiated refers to those cells that maintain in culture all, or a substantial amount of, their specialized structure and function typical of the cell type in vivo. Partially differentiated cells maintain less than a substantial amount of their full complement of specialized structure and/or function.
  • Nucleic acid constructs comprising a gene switch/biosensor and a nucleic acid sequence encoding a stem cell-attracting chemokine, which is expressed in response to a stimulus that is present in injured but not health tissue, may be introduced into stem cells, progenitor cells, or mature (differentiated) cells, for example.
  • stem cell is an unspecialized cell that is capable of replicating or self renewal, and developing into specialized cells of a variety of cell types.
  • the product of a stem cell undergoing division is at least one additional stem cell that has the same capabilities of the originating cell. For example, under appropriate conditions, a hematopoietic stem cell can produce a second generation stem cell and a neuron.
  • Stem cells include embryonic stem cells (e.g., those stem cells originating from the inner cells mass of the blastocyst) and adult stem cells (which can be found throughout the more mature animal, including humans).
  • stem cells are intended to include those stem cells found in animals that have matured beyond the embryonic stage (e.g., fetus, infant, adolescent, juvenile, adult, etc.).
  • the list of tissues reported to contain stem cells is growing and includes, for example, bone marrow, peripheral blood, brain, spinal cord, umbilical cord blood, amniotic fluid, placenta, dental pulp, blood vessels, skeletal muscle, epithelia of the skin and digestive system, cornea, retina, liver, and pancreas.
  • progenitor cell also known as a precursor cell
  • a myeloid progenitor/precursor cell can undergo cell division to yield two specialized cells (a neutrophil and a red blood cell).
  • phenotype refers to all the observable characteristics of a cell (or organism); its shape (morphology); interactions with other cells and the non-cellular environment (e.g., extracellular matrix); proteins that appear on the cell surface (surface markers); and the cell's behavior (e.g., secretion, contraction, synaptic transmission).
  • administer As used herein, the terms “administer”, “apply”, “treat”, “transplant”, “implant”, “deliver”, and grammatical variations thereof, are used interchangeably to provide vectors of the subject invention to target cells in vitro (e.g., ex vivo) or in vivo, or provide genetically modified cells of the subject invention to a subject.
  • co-administration refers to the administration of two or more agents simultaneously (in one or more preparations), or consecutively.
  • one or more types of genetically modified cells of the invention can be co-administered with other agents.
  • the invention can be illustrated by the following examples in which a dual plasmid vector system is used to detect and respond to hypoxia in cardiac tissue.
  • the first plasmid is the “transactivator” plasmid. This contains a cardiac-specific promoter linked to a sequence encoding an oxygen-sensitive chimeric transactivator that includes a GAL4 DBD, an ODD, and a p65 AD.
  • the second plasmid is the “reporter” plasmid which contains a gene encoding hSDF-1 ⁇ (a stem cell attracting chemokine) linked to a GAL4 UAS.
  • the “transactivator” plasmid expresses the chimeric transactivator specifically in the heart.
  • the transactivator In response to hypoxia, the transactivator binds to the GAL4 UAS sequence in the reporter plasmid, resulting in the expression of the hSDF-1 ⁇ gene.
  • the resulting high local concentration of hSDF-1 ⁇ gene results in higher levels of homing of stem cells to the damaged tissue.
  • the ODD (amino acids 394-603; see Huang et al. Proc Natl Acad Sci USA. 95:7987, 1998) was amplified by PCR from pCEP4/HIF-1alpha (Semenza et al. J Biol Chem. 271:32529, 1996) and inserted in frame between the coding sequence of GAL4 DBD and p65AD in pGS-MLC to generate pGS-MLC-ODD (see FIG. 1 ).
  • pGS-CMV is a plasmid that expresses a chimeric transcription factor consisting of the yeast GAL4 DBD (amino acids 1-93; Keegan et al., Science.
  • the reporter plasmid, pGene-hSDF-1 ⁇ -6his ( FIG. 1 ), encodes stem cell-attracting chemokine SDF-1 ⁇ driven by six copies of a 17bp GALA UAS (Giniger et al., Cell. 40:767, 1985) and an adenovirus E1b TATA box (Lillie and Green, Nature. 338:39, 1989). It was derived from pGene/V5-His/lacZ (INVITROGEN, Carlsbad, Calif.) by replacing the lacZ coding sequence with a hSDF-1 ⁇ cDNA. The identity of clones was confirmed by nucleotide sequence analysis.
  • Preparation of bone marrow stem cell Bone marrow was harvested from femur and tibia of BALB/c mice. Mononuclear cells isolated from bone marrow were sorted to separate Lin ⁇ cells with Lin cocktail by SPINSEP cell enrichment procedure (Stem Cell Technologies Inc., Vancouver, Canada). The Lin ⁇ bone marrow stem cells were enriched for c-kit + cells using a c-kit MACS microbead system (MACS bead and apparatus from Dynal Biotech, Oslo, Norway; biotin-conjugated rat anti-mouse c-kit monochonal antibody from BD biosciences, San Jose, Calif.).
  • a c-kit MACS microbead system (MACS bead and apparatus from Dynal Biotech, Oslo, Norway; biotin-conjugated rat anti-mouse c-kit monochonal antibody from BD biosciences, San Jose, Calif.).
  • Lin ⁇ c-kit + cells were resuspended in staining medium containing PKH26-GL (Sigma Company, St. Louis, Mo.). Referring to FIG. 2 , the mouse Lin ⁇ c-kit + stem cells were relatively homogenous in appearance. The labeling efficiency with PKH26 was approximately 100%.
  • MI generation, gene therapy, and stem cell therapy Age-matched 8-week-old BALB/c mice were used in a MI model. Mice were anesthetized, intubated and mechanically ventilated. A thoracotomy incision was made in the fourth intercostals space and the proximal left anterior descending (LAD) coronary artery was surgically occluded with an 8-0 non-absorbable suture. Successful coronary occlusion was confirmed by a change of ST segment on the EKG from a limb lead. In sham mice, ligation was placed beside the coronary artery.
  • LAD left anterior descending
  • PKH26-labeled Lin ⁇ c-kit + stem cells were systemically injected into the mice.
  • SDF-1 ⁇ and identification of stem cells in the heart were collected from the experimental animals 1 week after MI for detection of SDF-1 ⁇ expression and identification of stem cells that localized to ischemic heart tissue.
  • the expression of SDF-1 ⁇ in ischemic heart tissue was detected by immunohistochemistry using an antibody to hSDF-1 ⁇ or 6his using DAKO EnVision Systems Alkaline Phosphatase kit (DAKO, Cambridge, Mass.). Confocal imaging and immunofluorescent staining was also used to identify both the expression of hSDF-1 ⁇ (using a FITC-labeled secondary antibody) and the labeled transplanted stem cells (previously labeled with PKH26).
  • mice whose hearts were transfected with the MLC-ODD dual plasmid system then subjected to ischemia by ligation of LAD showed higher tissue-specific expression of hSDF-1 ⁇ in the ischemic mouse heart tissue than in the spleen, liver, lung, kidney and muscle at 1 week after intracardiac plasmid injection (see Western blot shown in FIG. 3 ).
  • immunohistochemical staining showed that hSDF-1 ⁇ was clearly present in ischemic myocardium ( FIG. 4A ) of mice and absent in the control (mice that did not undergo MI; FIG. 4B ).
  • Transplanted stem cells were attracted to the SDF-1 ⁇ -expressing peri-infarct zone (the ischemic tissue) in a dose-dependent manner with increasing time ( FIGS. 5A-5D ). This amplification did not compromise the cardiac specificity of MLC-2v promoter, which still maintained the previously observed expression profile (i.e., higher in ischemic heart than in the non-cardiac tissues).

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Abstract

A stem cell-attracting chemokine is expressed in damaged tissue using a stimulus-responsive vector system. The stimulus can be a physiological stimulus associated with cell injury, such as hypoxia or elevated glucose levels, for example. Expression of the chemokine increases the trafficking of stem cells to the damaged tissue.

Description

    CROSS-REFERENCE TO RELATED APPLICATIONS
  • The present application claims benefit of U.S. Provisional Application Ser. No. 60/513,067, filed Oct. 21, 2003, U.S. Provisional Application Ser. No. 60/494,184, filed Aug. 11, 2003, U.S. Provisional Application Ser. No. 60/513,657, filed Oct. 23, 2003, and U.S. Provisional Application Ser. No. 60/494,185, filed Aug. 11, 2003, each of which are hereby incorporated by reference herein in their entirety, including any figures, tables, nucleic acid sequences, amino acid sequences, and drawings.
  • GOVERNMENT SUPPORT
  • The subject matter of this application has been supported by a research grant from the National Institutes of Health under grant number 5R37HL2733423. Accordingly, the government may have certain rights in this invention.
  • BACKGROUND OF THE INVENTION
  • Several common diseases such as heart failure and type 1 diabetes are characterized by cellular degeneration in the affected organ. While a variety of drugs have been developed that treat the symptoms of such diseases, in many cases these drugs do not correct the underlying cellular degeneration causing the diseases, but rather merely ameliorate some of the symptoms of the disease. A theoretically more preferable method to treat the disease is to replace the degenerating or dead cells with healthy cells, e.g., by organ transplantation. Although successful in many cases, organ transplantation remains a complex process replete with both clinical and practical problems such as risk of immune system-mediated rejection and lack of donor organs.
  • BRIEF SUMMARY OF THE INVENTION
  • The invention relates to the fields of molecular biology, gene therapy, and medicine. More particularly, the invention relates to compositions and methods for delivering and amplifying expression of a gene encoding a stem cell-attracting chemokine in a specific tissue.
  • The invention relates to methods and compositions for selectively directing stem cells to a target tissue within a subject using a system that employs one or more vectors that contain a gene switch/biosensor, a tissue-specific promoter, a gene encoding a stem cell-attracting chemokine (e.g., stromal-derived factor (SDF)-1α, stem cell factor (SCF)) and a gene amplification system. The gene switch/biosensor allows expression of the chemokine-encoding gene to be regulated by a stimulus (e.g. a physiological stimulus such as one associated with cellular degeneration). Thus, expression of a stem cell-attracting chemokine can be increased in response to a particular event (e.g., increase in glucose concentration, decrease in oxygen concentration and mechanical stretch in vessel wall of hypertension, etc.). The high local concentrations of the stem cell-attracting chemokine will then cause stem cells to be recruited into and/or retained by the target tissue at a greater than normal rate. Once in the target tissue, the stem cells can differentiate (with or without the help of other agents such as morphogenesis) into new cells to replace the damaged cells and restore organ function.
  • BRIEF DESCRIPTION OF THE DRAWINGS
  • The patent or application file contains at least one drawing executed in color. Copies of this patent or patent application publication with color drawing(s) will be provided by the Office upon request and payment of the necessary fee.
  • FIG. 1 is a schematic illustration of a double plasmid model for stem cell beacon vector with a hypoxia switch. In the double plasmid model, the cardiac promoter controls an oxygen-sensitive transactivator. The transactivator produces a fusion protein which binds to the inducible promoter and activates transcription of stem cell acting chemokine, SDF-1α in the second plasmid. The oxygen-sensitive chimeric transactivator (GAL4/ODD/p65) is expressed by the transactivator plasmid under the control of the MLC-2v promoter. It can accumulate under hypoxia and activate the inducible promoter containing the GAL4 upstream activation sequence (UAS) in the reporter plasmid.
  • FIG. 2 is a photomicrograph showing the morphologic features of mice bone marrow Linc-kit+ cells after labeling with PKH26. The labeling efficiency of Linc-kit+ cell was approximately 100%.
  • FIG. 3 is a Western blot analysis showing an increased amount of tissue-specific hSDF-1α expression in the ischemic mouse heart tissue compared to hSDF-1α in the spleen, liver, lung, kidney, and muscle at 1 week after plasmid injection.
  • FIGS. 4A and 4B are photomicrographs showing immunohistochemical localization of hSDF-1 protein in cross-section of papillary muscle level 7 days after vigilant hSD F-1 plasmid transfer. Expression of hSDF-1 could be seen in the peri-infarct zone of ischemic myocardium in vigilant hSDF-1 plasmid treated MI group (FIG. 4A) with less-hSDF-1 expression in vigilant treated non-MI group (FIG. 4B).
  • FIGS. 5A-5D are photomicrographs of ischemic myocardium. FIG. 5B is a photomicrograph of a cross section of vigilant hSDF-1α plasmid-treated ischemic myocardium. Ischemic cardiomyocytes in the peri-infarction zone expressed hSDF-1α (large arrowheads). The transplanted Linc-kit+ stem cells (small arrowheads) are clustered proximal to the hSDF-1α positive zone. Cytoplasm was recognized by the red fluorescence of PKH26. FIG. 5D is a confocal image (100×) of the same specimen as in FIG. 5C. Ischemic cardiomyocytes express hSDF-1α (large arrowhead). The transplanted Linc-kit+ stem cells (small arrowheads) surround the hSDF-1α positive cardiomyocytes. FIG. 5A is ischemic myocardium without vigilant hSDF-1α plasmid treatment. Less hSDF-1α was expressed in ischemic tissue and few PKH26-labeled stem cells were attracted to ischemic myocardium (FIG. 5B).
  • FIG. 6 shows the effect of myocardial ischemia on hypoxia-induced hSDF-1 protein expression in mouse heart. The mouse heart underwent ischemia for one-half hour, 24 hours, 48 hours, 72 hours and 7 days. After left ventricular ischemia, the heart was analyzed for hSDF-1/6×His protein expression. GAPDH confirmed the integrity and equal loading of protein. The time course of vigilant SDF-1 vector expression shows the hSDF-1 protein reached a peak in 24 hours after gene treatment. At 7 days, the expression of vigilant SDF-1 was stronger than endogenous SDF-1 expression. Positive SDF control is SDF-1 plasmid that can constitutively express SDF-1.
  • FIGS. 7A-7D are photomicrographs showing that expression of hSDF-1 in ischemic myocardium mobilizes labeled Lin−c-Kit+ HSC cells (red) surrounding the cardiomyocytes's expression of hSDF-1 (green). It was observed that groups of cells were positively stained for hSDF-1, and attracted more HSC, around the site in the vigilant hSDF-1-treated MI group (FIGS. 7B and 7D), while less SDF-1 expression and few mobilized HSC could been seen in the medium-treated MI group (FIGS. 7A and 7C).
  • FIGS. 8A and 8B are bar graphs showing the infarci zone thickness (FIG. 8A) and infarct size (percentage) (FIG. 8B) in the ischemic myocardium shown in FIGS. 7A-7D, treated with vigilant hSDF-1 (VSDF-1+MI) and medium (MI; control).
  • FIGS. 9A-9D are bar graphs showing that MSCs implantation improves left ventricular function. Both LV systolic performance (LVSP) and diastolic performance (LVDP), as assessed by maximum and minimum dP/dt, respectively, were greatest in the vigilant hSDF-1 group (maximum dP/dt 3004.6±362.7 in medium control vs 4057.8±821.4 in vigilant hSDF-1, p=0.0015 (FIG. 9C); minimum dP/dt −2447.2±621.9 in medium control vs −3223.0±455.9 in vigilant hSDF-1, p=0.037) (FIG. 9D), indicating that both systolic and diastolic functions were best preserved in the vigilant HSDF-1group after myocardial infarction versus medium group.
  • DETAILED DESCRIPTION OF THE INVENTION
  • The invention provides a system for regenerating tissue by directing stem cells to a damaged organ. The system involves delivering to a target tissue, vectors that express a stem cell-attracting chemokine in response to a stimulus that is present in injured but not healthy tissue. The occurrence of a cell-injuring event thus results in production of the stem cell-attracting chemokine at the site of injury, and consequently increased trafficking of stem cells to the injured tissue. Differentiation of the stem cells at this site results in replacement of damaged cells with healthy cells—a process that results in organ regeneration.
  • The below described preferred embodiments illustrate adaptations of these compositions and methods. Nonetheless, from the description of these embodiments, other aspects of the invention can be made and/or practiced based on the description provided below.
  • Biological Methods. Methods involving conventional molecular biology techniques are described herein. Such techniques are generally known in the art and are described in detail in methodology treatises such as Molecular Cloning: A Laboratory Manual, 3rd ed., vol. 1-3, ed. Sambrook et al., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y., 2001; and Current Protocols in Molecular Biology, ed. Ausubel et al., Greene Publishing and Wiley-Interscience, New York, 1992 (with periodic updates). Methods for chemical synthesis of nucleic acids are discussed, for example, in Beaucage and Carruthers, Tetra. Letts. 22:1859-1862, 1981, and Matteucci et al., J. Am. Chem. Soc. 103:3185, 1981. Chemical synthesis of nucleic acids can be performed, for example, on commercial automated oligonucleotide synthesizers. Immunological methods (e.g., preparation of antigen-specific antibodies, immunoprecipitation, and immunoblotting) are described, e.g., in Current Protocols in Immunology, ed. Coligan et al., John Wiley & Sons, New York, 1991; and Methods of Immunological Analysis, ed. Masseyeff et al., John Wiley & Sons, New York, 1992. Conventional methods of gene transfer and gene therapy can also be adapted for use in the present invention. See, e.g., Gene Therapy Methods: ed. M. I. Phillips, Vol. 436, Methods in Enzymology, Academic Press, 2002; Gene Therapy: Principles and Applications, ed. T. Blackenstein, Springer Verlag, 1999; Gene Therapy Protocols (Methods in Molecular Medicine), ed. P. D. Robbins, Humana Press, 1997; and Retro-vectors for Human Gene Therapy, ed. C. P. Hodgson, Springer Verlag, 1996.
  • Vectors. The invention employs one or more vectors to express a stem cell-attracting chemokine in response to a stimulus that is present in injured, but not healthy, tissue. A variety of different vectors might be used depending on the particular application. A preferred system of the invention uses one or more vectors that contain a gene switch/biosensor, a tissue-specific promoter operably linked to a gene encoding a stem cell-attracting chemokine, and a gene amplification system. The gene switch/biosensor allows transgene expression to be regulated by a stimulus (e.g., a physiological stimulus such as hypoxia or high glucose levels). Thus, for example, expression of the gene encoding a stem cell-attracting chemokine can be modulated in response to a particular event (e.g., infarction or onset of diabetes). The tissue-specific promoter allows preferential expression of the gene encoding the stem cell-attracting chemokine in a given target tissue, thereby avoiding expression in other tissues that might be harmful to the subject. The gene amplification system allows a sufficient amount of the gene encoding a stem cell-attracting chemokine to be produced to cause a desired result (e.g., recruitment of stem cells to damaged tissue).
  • The gene switch/biosensor portion of the system can be any suitable construct that is activated in response to a stimulus associated with cell injury. In the examples described below and in FIG. 1, the gene switch/biosensor is a transactivator plasmid that includes a cardiac-specific promoter linked to a sequence encoding an oxygen-sensitive chimeric transactivator that includes a GAL4 DNA-binding domain (DBD), an oxygen-dependent degradation domain (ODD), and a p65 activation domain (p65 AD). In response to hypoxia, the transactivator binds to the GAL4 UAS sequence in the reporter plasmid (which contains a gene encoding hSDF-1α operably linked to a GAL4 UAS).
  • In addition to oxygen-sensitive constructs, a number of other gene switch/biosensors are contemplated for use in the invention. Such gene switch/biosensors include a glucose switch based on the Krebs cycle (e.g., glucose response element or other glucose regulated elements), a mechanical stretch switch based on an epithelial sodium channel (ENaC), and a hypoxia response element (HRE).
  • The gene switch/biosensor portion of the system may include tissue-specific regulatory elements to direct tissue-specific expression of a stem cell-attracting chemokine gene. For example, to express genes specifically in the heart, a number of cardiac-specific regulatory elements can be used. An example of a cardiac-specific promoter is the ventricular form of MLC-2v promoter (see, Zhu et al., Mol. Cell Biol. 13:4432-4444, 1993; Navankasattusas et al., Mol. Cell Biol. 12:1469-1479, 1992) or a variant thereof such as a 281 bp fragment of the native MLC-2v promoter (nucleotides −264 to +17, Genebank Accession No. U26708). Examples of other cardiac-specific promoters include alpha myosin heavy chain (Minamino et al., Circ. Res. 88:587-592, 2001) and myosin light chain-2 (Franz et al., Circ. Res. 73:629-638, 1993).
  • In other applications, promoters that confer gene expression specific to tissues other than the heart may be used. Promoters that are kidney-specific include CLCN5 (Tanaka et al., Genomics 58:281-292, 1999), renin (Sinn et al., Physical Genomics 3:25-31, 2000), androgen-regulated protein, sodium-phosphate cotransporter, renal cytochrome P-450, parathyroid hormone receptor and kidney-specific cadherin. See Am. J. Physiol. Renal Physiol. 279:F383-392, 2000. The E-cadherin promoter directs expression specific to epithelial cells (Behrens et al., PNAS 88:11495-11499, 1991) while the Estrogen receptor (ER) 3 gene promoter directs expression specifically to the breast epithelium (Hopp et al., J. Mammary Gland Biol. Neoplasia 3:73-83, 1998). Endothelial cell gene promoters include endoglin and ICAM-2. See Velasco et al., Gene Ther. 8:897-904, 2001. Liver-specific promoters include the human phenylalanine hydroxylase (PAH) gene promoters (Bristeau et al., Gene 274:283-291, 2001), hB1F (Zhang et al., Gene 273:239-249, 2001), and the human C-reactive protein (CRP) gene promoter (Ruther et al., Oncogene 8:87-93, 1993). An example of a muscle-specific gene promoter is human enolase (ENO3). Peshavaria et al., Biochem. J. 292(Pt 3):701-704, 1993. A number of brain-specific promoters may be useful in the invention and include the thy-1 antigen and gamma-enolase promoters (Vibert et al., Eur. J. Biochem. 181:33-39, 1989), the glial-specific glial fibrillary acidic protein (GFAP) gene promoter (Cortez et al., J. Neurosci. Res. 59:39-46, 2000), and the human FGF1 gene promoter (Chiu et al., Oncogene 19:6229-6239, 2000). The GATA family of transcription factors have promoters directing neuronal and thymocyte-specific expression. See Asnagli et al., J. Immunol. 168:4268-4271, 2002. An example of a pancreas-specific promoter is the pancreas duodenum homeobox 1 (PDX-1) promoter. Samara et al., Mol. Cell Biol. 22:4702-4713, 2002.
  • The vectors of the invention include a gene encoding a stem-cell attracting chemokine. Any such chemokine-encoding gene may be used in the invention. For example, genes such as SCF, vascular endothelial growth factor (VEGF), granulocyte colony-stimulating factor (G-CSF), and integrins may be used. For the applications described in the Examples section, a preferred gene encoding a stem-cell attracting chemokine is one that encodes SDF-1α, an alpha-chemokine for hematopoietic stem cells and endothelial progenitor cells. The sequences of a number of different native mammalian SDF-1α proteins are known, including human, rat, mouse, and cat. See, e.g., Shirozu et al., Genomics, 28:495, 1995; Tashiro et al., Science 261:600, 1993; Nishimura et al., Eur. J. Immunogenet. 25:303, 1998; and GenBank Accession No. AF189724.
  • The vector(s) of the invention features a gene amplification system that provides a high level of tissue-specific chemokine gene expression (tissue-specific promoters typically do not allow high levels of gene expression compared to non-tissue specific promoters such as the CMV promoter). In the examples described herein, gene amplification is achieved using a dual plasmid system, wherein, in response to a signal, a transactivator plasmid is induced to express a transactivator complex that binds a regulatory element on a reporter plasmid to cause a high level of expression of the chemokine gene.
  • The vector(s) of the invention may also include other regulatory sequences including insulators, silencers, enhancers, initiation sites, internal ribosome entry site elements, termination signals and polyA tails. An example of a cardiac-specific enhancer is alpha BE-4. Gopal-Srivastava et al., 15:7081-7090, 1995.
  • Vector Delivery. The vector(s) of the invention may be delivered to target tissues in any suitable manner. Several methods are known. For example, as described in the Examples section below, plasmid vectors may simply be injected into a target tissue.
  • Other methods for physically introducing plasmids might also be used, e.g. the particle bombardment method (see Yang et al., Mol. Med. Today 2:476-481 1996 and Davidson et al., Rev. Wound Repair Regen. 6:452-459, 2000), electroporation (see, Preat, V., Ann. Pharm. Fr. 59:239-244 2001), and cationic lipid-based methods (see, Felgner et al., Ann. N.Y. Acad. Sci. 772:126-139, 1995 and Lasic and Templeton, Adv. Drug Delivery Rev. 20:221-266, 1996).
  • In various embodiments of the invention, the nucleic acid constructs of the invention are introduced into viral vectors. Viral vector methods and protocols are reviewed in Kay et al. Nature Medicine 7:33-40, 2001. Preferred viral vectors for use in the invention are recombinant adeno-associated virus (AAV) vectors. See, e.g., Tal, J., J. Biomed. Sci. 7:279-291, 2000 and Monahan and Samulski, Gene Therapy 7:24-30, 2000. In addition to AAV, other viruses may be used to create vectors useful in the invention. A list of such viruses include adenovirus (see, W. C. Russell, Journal of General Virology 81:2573-2604, 2000, and Bramson et al., Curr. Opin. Biotechnol. 6:590-595, 1995), herpes simplex virus (see, Cotter and Robertson, Curr. Opin. Mol. Ther. 1:633-644, 1999), lentiviruses (see, Vigna and Naldini, J. Gene Med. 5:308-316, 2000 and Miyoshi et al., J. Virol. 72:8150-8157, 1998), retroviruses (see Hu and Pathak, Pharmacol. Rev. 52:493-511, 2000 and Fong et al., Crit. Rev. Ther. Drug Carrier Syst. 17:1-60, 2000), and others (e.g., alphaviruses such as Semliki Forest Virus and Sindbis Virus).
  • The presence of exogenous nucleic acid constructs in cells in a target tissue can be monitored by conventional methods. For example, vector-transduced cells can be assessed by PCR, flow cytometry and immunochemistry.
  • Target Cells (Tissues) for Introduction of Vectors in vitro (ex vivo) or in vivo.
  • Cells genetically modified with the vectors of the invention can range in plasticity from totipotent or pluripotent stem cells (e.g., adult or embryonic), precursor or progenitor cells, to highly specialized cells, such as those of the central nervous system (e.g., neurons and glia), pancreas, heart, lung, and liver. Stem cells can be obtained from a variety of sources, including embryonic tissue, fetal tissue, adult tissue, umbilical cord blood, peripheral blood, bone marrow, and brain, for example. Methods and markers commonly used to identify stem cells and to characterize differentiated cell types are described in the scientific literature (e.g., Stem Cells: Scientific Progress and Future Research Directions, Appendix E1-E5, report prepared by the National Institutes of Health, June, 2001). The list of adult tissues reported to contain stem cells is growing and includes bone marrow, peripheral blood, umbilical cord blood, brain, spinal cord, dental pulp, blood vessels, skeletal muscle, epithelia of the skin and digestive system, cornea, retina, liver, and pancreas.
  • There are over 200 cell types in the human body, and the vectors of the subject invention can be introduced into any of them. A non-exhaustive list of cell types within into which vectors containing a nucleic acid sequence encoding a stem cell-attracting chemokine may be introduced is shown in Table 1. Other examples of cell types that can be genetically modified with the vectors of the invention include those disclosed by Spier R.E. et al., eds., (2000) The Encyclopedia of Cell Technology, John Wiley & Sons, Inc., and Alberts B. et al., eds., (1994) Molecular Biology of the Cell, 3rd ed., Garland Publishing, Inc., e.g., pages 1188-1189.
    TABLE 1
    Examples of Target Cells
    Keratinizing Epithelial Cells
    keratinocyte of epidermis
    basal cell of epidermis
    keratinocyte of fingernails and toenails
    basal cell of nail bed
    hair shaft cells
    medullary
    cortical
    cuticular
    hair-root sheath cells
    cuticular
    of Huxley's layer
    of Henle's layer
    external
    hair matrix cell
    Cells of Wet Stratified Barrier Epithelia
    surface epithelial cell of stratified squamous epithelium of cornea
    tongue, oral cavity, esophagus, anal canal, distal urethra, vagina
    basal cell of these epithelia
    cell of urinary epithelium
    Epithelial Cells Specialized for Exocrine Secretion
    cells of salivary gland
    mucous cell
    serous cell
    cell of von Ebner's gland in tongue
    cell of mammary gland, secreting milk
    cell of lacrimal gland, secreting tears
    cell of ceruminous gland of ear, secreting wax
    cell of eccrine sweat gland, secreting glycoproteins
    cell of eccrine sweat gland, secreting small molecules
    cell of apocrine sweat gland
    cell of gland of Moll in eyelid
    cell of sebaceous gland, secreting lipid-rich sebum
    cell of Bowman's gland in nose
    cell of Brunner's gland in duodenum, secreting alkaline solution of
    mucus and enzymes
    cell of seminal vesicle, secreting components of seminal fluid,
    including fructose
    cell of prostate gland, secreting other components of seminal fluid
    cell of bulbourethral gland, secreting mucus
    cell of Bartholin's gland, secreting vaginal lubricant
    cell of gland of Littré, secreting mucus
    cell of endometrium of uterus, secreting mainly carbohydrates
    isolated goblet cell of respiratory and digestive tracts, secreting mucus
    mucous cell of lining of stomach
    zymogenic cell of gastric gland, secreting pepsinogen
    oxyntic cell of gastric gland, secreting HCl
    acinar cell of pancreas, secreting digestive enzymes and bicarbonate
    Paneth cell of small intestine, secreting lysozyme
    type II pneumocyte of lung, secreting surfactant
    Clara cell of lung
    Cells Specialized for Secretion of Hormones
    cells of anterior pituitary, secreting
    growth hormone
    follicle-stimulating hormone
    luteinizing hormone
    prolactin
    adrenocorticotropic hormone
    thyroid-stimulating hormone
    cell of intermediate pituitary, secreting melanocyte-stimulating hormone
    cells of posterior pituitary, secreting
    oxytocin
    vasopressin
    cells of gut and respiratory tract, secreting
    serotonin
    endorphin
    somatostatin
    gastrin
    secretin
    cholecystokinin
    insulin
    glucagons
    bombesin
    cells of thyroid gland, secreting
    thyroid hormone
    calcitonin
    cells of parathyroid gland, secreting
    parathyroid hormone
    oxyphil cell
    cells of adrenal gland, secreting
    epinephrine
    norepinephrine
    steroid hormones
    mineralocorticoids
    glucocorticoids
    cells of gonads, secreting
    testosterone
    estrogen
    progesterone
    cells of juxtaglomerular apparatus of kidney
    juxtaglomerular cell
    macula densa cell
    peripolar cell
    mesangial cell
    Epithelial Absorptive Cells in Gut, Exocrine Glands, and Urogenita Tract
    brush border cell of intestine
    striated duct cell of exocrine glands
    gall bladder epithelial cell
    brush border cell of proximal tubule of kidney
    distal tubule cell of kidney
    nonciliated cell of ductulus efferens
    epididymal principal cell
    epididymal basal cell
    Cells Specialized for Metabolism and Storage
    hepatocyte
    fat cells (e.g., adipocyte)
    white fat
    brown fat
    lipocyte of liver
    Epithelial Cells Serving Primarily a Barrier Function, Lining the
    Lung, Gut, Exocrine Glands, and Urogenital Tract
    type I pneumocyte
    pancreatic duct cell
    nonstriated duct cell of sweat gland, salivary gland, mammary gland, etc.
    parietal cell of kidney glomerulus
    podocyte of kidney glomerulus
    cell of thin segment of loop of Henle
    collecting duct cell
    duct cell of seminal vesicle, prostate gland, etc.
    Epithelial Cells Lining Closed Internal Body Cavities
    vascular endothelial cells of blood vessels and lymphatics (e.g.,
    microvascular cell)
    fenestrated
    continuous
    splenic
    synovial cell
    serosal cell
    squamous cell lining perilymphatic space of ear
    cells lining endolymphatic space of ear
    squamous cell
    columnar cells of endolymphatic sac
    with microvilli
    without microvilli
    “dark” cell
    vestibular membrane cell
    stria vascularis basal cell
    stria vascularis marginal cell
    cell of Claudius
    cell of Boettcher
    choroid plexus cell
    squamous cell of pia-arachnoid
    cells of ciliary epithelium of eye
    pigmented
    nonpigmented
    corneal “endothelial” cell
    Ciliated Cells with Propulsive Function
    of respiratory tract
    of oviduct and of endometrium of uterus
    of rete testis and ductulus efferens
    of central nervous system
    Cells Specialized for Secretion of Extracellular Matrix
    epithelial:
    ameloblast
    planum semilunatum cell of vestibular apparatus of ear
    interdental cell of organ of Corti
    nonepithelial:
    fibroblasts
    pericyte of blood capillary (Rouget cell)
    nucleus pulposus cell of intervertebral disc
    cementoblast/cementocyte
    odontoblast/odontocyte
    chondrocytes
    of hyaline cartilage
    of fibrocartilage
    of elastic cartilage
    osteoblast/osteocyte
    osteoprogenitor cell
    hyalocyte of vitreous body of eye
    stellate cell of perilymphatic space of ear
    Contractile Cells
    skeletal muscle cells
    red
    white
    intermediate
    muscle spindle-nuclear bag
    muscle spindle-nuclear chain
    satellite cell
    heart muscle cells
    ordinary
    nodal
    Purkinje fiber
    Cardiac valve tissue
    smooth muscle cells
    myoepithelial cells:
    of iris
    of exocrine glands
    Cells of Blood and Immune System
    red blood cell (erythrocyte)
    megakaryocyte
    macrophages
    monocyte
    connective tissue macrophage
    Langerhan's cell
    osteoclast
    dendritic cell
    microglial cell
    neutrophil
    eosinophil
    basophil
    mast cell
    plasma cell
    T lymphocyte
    helper T cell
    suppressor T cell
    killer T cell
    B lymphocyte
    IgM
    IgG
    IgA
    IgE
    killer cell
    stem cells and committed progenitors for the blood and immune system
    Sensory Transducers
    photoreceptors
    rod
    cones
    blue sensitive
    green sensitive
    red sensitive
    hearing
    inner hair cell of organ of Corti
    outer hair cell of organ of Corti
    acceleration and gravity
    type I hair cell of vestibular apparatus of ear
    type II hair cell of vestibular apparatus of ear
    taste
    type II taste bud cell
    smell
    olfactory neuron
    basal cell of olfactory epithelium
    blood pH
    carotid body cell
    type I
    type II
    touch
    Merkel cell of epidermis
    primary sensory neurons specialized for touch
    temperature
    primary sensory neurons specialized for temperature
    cold sensitive
    heat sensitive
    pain
    primary sensory neurons specialized for pain
    configurations and forces in musculoskeletal system
    proprioceptive primary sensory neurons
    Autonomic Neurons
    cholinergic
    adrenergic
    peptidergic
    Supporting Cells of Sense Organs and of Peripheral Neurons
    supporting cells of organ of Corti
    inner pillar cell
    outer pillar cell
    inner phalangeal cell
    outer phalangeal cell
    border cell
    Hensen cell
    supporting cell of vestibular apparatus
    supporting cell of taste bud
    supporting cell of olfactory epithelium
    Schwann cell
    satellite cell
    enteric glial cell
    Neurons and Glial Cells of Central Nervous System
    neurons
    glial cells
    astrocyte
    oligodendrocyte
    Lens Cells
    anterior lens epithelial cell
    lens fiber
    Pigment Cells
    melanocyte
    retinal pigmented epithelial cell
    iris pigment epithelial cell
    Germ Cells
    oogonium/oocyte
    spermatocyte
    Spermatogonium
    blast cells
    fertilized ovum
    Nurse Cells
    ovarian follicle cell
    Sertoli cell
    thymus epithelial cell (e.g., reticular cell)
    placental cell
  • Administration of Compositions. Ex vivo delivery of cells transduced with rAAV vectors or infected with rAAV virus is provided for within the invention. Stem cell-mediated ex vivo gene therapy may be used to transplant stimulus-responsive vector system-transduced host stem cells back into the host heart. A suitable ex vivo protocol may include several steps. Adult stem cells may be harvested from the host and any suitable delivery vector may be used to transduce a stimulus-responsive rAAV vector system into the host's own stem cells. These genetically modified cells may then be transplanted back into the host. Several approaches may be used for the reintroduction of stem cells into the host, including jugular vein, tongue vein, intra-pericardial injection and intracardiac intravenous delivery (multiple epicardial puncture or endoventricular injection). Microencapsulation of cells transduced or infected with a stimulus-responsive rAAV vector system modified ex vivo is another technique that may be used within the invention. Autologous and allogeneic cell transplantation may be used according to the invention.
  • Any suitable delivery method may be used for transducing host stem cells or cardiac cells with a stimulus-responsive rAAV vector system ex vivo. Several suitable modes of delivery are described above and include the following: microinjection, electroporation, calcium phosphate transfection, DEAE dextran transfection, polylysine conjugates, receptor-mediated uptake systems, liposomes, lipid-mediated delivery systems, matrix-impregnated delivery, microparticle encapsulation, intra-cellular targeting ligands, virion-like particles, and viruses.
  • Effective Doses. The vectors described above are preferably administered to a mammal in an effective amount, that is, an amount capable of producing a desirable result in a treated subject (e.g., regeneration of myocardium in an infarcted heart). Such a therapeutically effective amount can be determined empirically using experimental animals to determine a dose that results in a desired level of stem cell recruitment to a target tissue. It is expected that an appropriate dosage for intravenous administration of plasmids would be in the range of about 1 μg to 1 mg per site. Different effective dose ranges will vary depending on the weight and bio-responses from the mammals used. These ranges are evident to one of ordinary skill in the art and are within the embodiments of the invention.
  • Stem Cells. In conjunction with administration of the above described vector system to a target tissue, to enhance the number of stem cells that home to a target tissue in an animal subject, stem cells can be administered to an animal subject and/or an agent that increases the number of available endogenous stem cells can be administered to the subject. Methods for producing stem cells for transplant are known. Any stem cells suitable for a particular application of the invention may be used. For instance, as described in the Examples section below, stem cells can be isolated from bone marrow according to expression of certain markers. In vitro culture methods can be used to expand the number of these cells. Stem cells isolated, and optionally expanded, in this manner can be administered to an animal (e.g., by intravenous injection, direct delivery to the target tissue, or other suitable means) to increase the number of stem cells available to traffic to the target tissue. To avoid immune system-mediated rejection, the administered stem cells are preferably histocompatible with the host animal. The number of stems cell administered to a given animal subject will depend on the individual situation (e.g., extent of tissue damage, type of tissue, size of animal, health of animal, etc.), but a therapeutic range is expected to be about 1×106 to about 1×1010 cells.
  • Because stem cells occur naturally in animals, a step of exogenously administering stem cells to an animal subject is not strictly required (i.e., naturally occurring stem cells will traffic to the treated target tissue without need of an additional step). In many cases, however, the number of available naturally-occurring stem cells may be less than optimal to expedite regeneration of a target tissue. In these cases, the number of stem cells available in the peripheral blood can be increased by known methods. For example, the rate of stem cell movement from the bone marrow to the peripheral blood (i.e., “stem cell mobilization”) can be increased by administering to a subject an agent that causes a stem cell to mobilize from the bone marrow. A number of such agents are known. See, e.g., those described in International Application WO 00/50048; and colony stimulating factors such as G-CSF.
  • Stem Cell Differentiation. Studies from several species demonstrate that bone marrow-derived stem cells are stem cells for various mesenchymal tissues. The cells are therefore not simply stromal precursors, but precursors of peripheral tissues, such as heart muscle (Pittenger M F, Marshak D R. Stem Cell Biology, 949-973, 2001). Normal growth and ultimate stem cell fate depend on engraftment in an appropriate “niche”. The mechanism by which the local milieu influences stem cell differentiation is not yet determined. Enhancement of functional activity of a specific organ's niche for heart muscle, e.g., by positive inotropic (pharmacologic augment of contractility) or by positive chronotropic stimuli (heart rate increase by excise), may promote and intensify the transdifferentiation of bone marrow-derived stem cells to a cardiomyocyte phenotype. After an injury (e.g., myocardial infarction), specific factors, including cytokines, stem cell factor, and various growth factors that stimulate cell replication and substitution in the injured tissue are released by surrounding cells. In addition, transplanted stem cells differentiate to cardiomyocytes and begin to express the contractile proteins specific for striated heart muscle, including Desmin, α-myosin, heavy chain, α-Actinin, and phospholamban at levels that are the same as in the host cardiomyocytes. (Strauer B E, Kornowski R Circulation 107:929-934, 2003).
  • Treatment of Various Disease States. The vector system of the invention can be adapted to a particular disease state by using an appropriate tissue-specific promoter, an appropriate stimulus-responsive element, and appropriate stem cell attracting chemokine genes for regenerating damaged tissue associated with a particular disease state. In the examples described below, this system is employed to direct homing of stem cells to ischemic cardiac tissue. The invention, however, can be directed to treat diseases other than ischemia and to target stem cells to tissues other than the heart. For example, stem cells for replacing damaged pancreatic beta cells in a type 1 diabetic patient can be induced to home to the pancreas using, in conjunction with the above-described SDF-1α-encoding reporter vector, a transactivator vector containing a pancreas-specific promoter and a glucose sensitive element, for example, in addition to the GAL4 DBD and p65 AD sequences. Using this particular system, the transactivator vector detects elevated glucose levels in response to degenerating beta cells; it expresses a chimeric transactivator protein specifically in the pancreas. The transactivator protein then binds to the reporter vector and activates amplified expression of the gene encoding the stem cell-attracting chemokine causing stem cells to traffic to the pancreas. When glucose levels are decreased (i.e., when beta cells have been replaced) the system switches off.
  • Thus it is clear from the invention described herein that the system is a regulated system which can be switched on or off as needed depending on the stimulus (i.e., decrease/increase in glucose or decrease/increase in oxygen). The present invention overcomes the limitation of the present state of the art by being a homeostasis sensitive system and not a constitutively “turned-on” system described in the state of the art. Moreover, the stem cells recruited into the ischemic heart or damaged liver are anti-apoptotic which is important for tissue repair to replace damaged cells, i.e., are newly generated myocardiocytes or hepatocytes. These cells are natural to the host and do not become rejected or tumorigenic.
  • As used in this specification, including the appended claims, the singular “a”, “an”, and “the” include plural reference unless the contact dictates otherwise. Thus, for example, a reference to “a polynucleotide” includes more than one such polynucleotide. A reference to “a nucleic acid sequence” includes more than one such sequence. A reference to “a cell” includes more than one such cell.
  • The terms “comprising”, “consisting of” and “consisting essentially of” are defined according to their standard meaning. The terms may be substituted for one another throughout the instant application in order to attach the specific meaning associated with each term.
  • The term “polypeptide” refers to any polymer comprising any number of amino acids, and is interchangeable with “protein”, “gene product”, and “peptide”.
  • A nucleic acid molecule can be isolated from a natural source, or it can be produced using recombinant DNA technology (e.g., polymerase chain reaction (PCR) amplification, cloning) or chemical synthesis. Nucleic acid molecules can be generated or modified using a variety of techniques including, but not limited to, classic mutagenesis techniques and recombinant DNA techniques, such as site-directed mutagenesis, chemical treatment of a nucleic acid molecule to induce mutations, restriction enzyme cleavage of a nucleic acid fragment, ligation of nucleic acid fragments, polymerase chain reaction (PCR) amplification and/or mutagenesis of selected regions of a nucleic acid sequence, synthesis of oligonucleotide mixtures and ligation of mixture groups to “build” a mixture of nucleic acid molecules, and combinations thereof.
  • Although the phrase “nucleic acid molecule” (or “nucleotide molecule”) primarily refers to the physical nucleic acid molecule and the phrase “nucleic acid sequence” primarily refers to the sequence of nucleotides on the nucleic acid molecule, the two phrases can be used interchangeably. As used herein, a “coding” nucleic acid sequence refers to a nucleic acid sequence that encodes at least a portion of a polypeptide (e.g., a portion of an open reading frame), and can more particularly refer to a nucleic acid sequence encoding a polypeptide which, when operatively linked to a transcription control sequence (e.g., a promoter sequence), can express the polypeptide.
  • The term “operably-linked” or “operatively linked” is used herein to refer to an arrangement of flanking sequences wherein the flanking sequences so described are configured or assembled so as to perform their usual function. Thus, a flanking sequence operably-linked to a coding sequence may be capable of effecting the replication, transcription and/or translation of the coding sequence. For example, a coding sequence is operably-linked to a promoter when the promoter is capable of directing transcription of that coding sequence. A flanking sequence need not be contiguous with the coding sequence, so long as it functions correctly. Thus, for example, intervening untranslated yet transcribed sequences can be present between a promoter sequence and the coding sequence, and the promoter sequence can still be considered “operably-linked” to the coding sequence.
  • As used herein, the term “isolated” means removal from its native environment, and can include removal from its immediate native environment.
  • As used herein, the term “differentiated” refers to those cells that maintain in culture all, or a substantial amount of, their specialized structure and function typical of the cell type in vivo. Partially differentiated cells maintain less than a substantial amount of their full complement of specialized structure and/or function.
  • Nucleic acid constructs comprising a gene switch/biosensor and a nucleic acid sequence encoding a stem cell-attracting chemokine, which is expressed in response to a stimulus that is present in injured but not health tissue, may be introduced into stem cells, progenitor cells, or mature (differentiated) cells, for example. As used herein, the term “stem cell” is an unspecialized cell that is capable of replicating or self renewal, and developing into specialized cells of a variety of cell types. The product of a stem cell undergoing division is at least one additional stem cell that has the same capabilities of the originating cell. For example, under appropriate conditions, a hematopoietic stem cell can produce a second generation stem cell and a neuron. Stem cells include embryonic stem cells (e.g., those stem cells originating from the inner cells mass of the blastocyst) and adult stem cells (which can be found throughout the more mature animal, including humans). As used herein, stem cells are intended to include those stem cells found in animals that have matured beyond the embryonic stage (e.g., fetus, infant, adolescent, juvenile, adult, etc.). The list of tissues reported to contain stem cells is growing and includes, for example, bone marrow, peripheral blood, brain, spinal cord, umbilical cord blood, amniotic fluid, placenta, dental pulp, blood vessels, skeletal muscle, epithelia of the skin and digestive system, cornea, retina, liver, and pancreas.
  • As used herein, the term “progenitor cell” (also known as a precursor cell) is unspecialized or has partial characteristics of a specialized cell that is capable of undergoing cell division and yielding two specialized cells. For example, a myeloid progenitor/precursor cell can undergo cell division to yield two specialized cells (a neutrophil and a red blood cell).
  • As used herein, the term “phenotype” refers to all the observable characteristics of a cell (or organism); its shape (morphology); interactions with other cells and the non-cellular environment (e.g., extracellular matrix); proteins that appear on the cell surface (surface markers); and the cell's behavior (e.g., secretion, contraction, synaptic transmission).
  • As used herein, the terms “administer”, “apply”, “treat”, “transplant”, “implant”, “deliver”, and grammatical variations thereof, are used interchangeably to provide vectors of the subject invention to target cells in vitro (e.g., ex vivo) or in vivo, or provide genetically modified cells of the subject invention to a subject.
  • As used herein, the term “co-administration” and variations thereof refers to the administration of two or more agents simultaneously (in one or more preparations), or consecutively. For example, one or more types of genetically modified cells of the invention can be co-administered with other agents.
  • Unless otherwise defined, all technical terms used herein have the same meaning as commonly understood by one or ordinary skill in the art to which this invention belongs. Commonly understood definitions of molecular biology terms can be found in Rieger et al., Glossary of Genetics: Classical and Molecular, 5th edition, Springer-Verlag: New York, 1991; and Lewin, Genes V, Oxford University Press: New York, 1994. Commonly understood definitions of virology terms can be found in Granoff and Webster, Encyclopedia of Virology, 2nd edition, Academic Press: San Diego, Calif., 1999; and Tidona and Darai, The Springer Index of Viruses, 1st edition, Springer-Verlag: New York, 2002. Commonly understood definitions of microbiology can be found in Singleton and Sainsbury, Dictionary of Microbiology and Molecular Biology, 3rd edition, John Wiley & Sons: New York, 2002.
  • Although methods and materials similar or equivalent to those described herein can be used in the practice or testing of the present invention, suitable methods and materials are described below.
  • EXAMPLES
  • The invention can be illustrated by the following examples in which a dual plasmid vector system is used to detect and respond to hypoxia in cardiac tissue. The first plasmid is the “transactivator” plasmid. This contains a cardiac-specific promoter linked to a sequence encoding an oxygen-sensitive chimeric transactivator that includes a GAL4 DBD, an ODD, and a p65 AD. The second plasmid is the “reporter” plasmid which contains a gene encoding hSDF-1α (a stem cell attracting chemokine) linked to a GAL4 UAS. The “transactivator” plasmid expresses the chimeric transactivator specifically in the heart. In response to hypoxia, the transactivator binds to the GAL4 UAS sequence in the reporter plasmid, resulting in the expression of the hSDF-1α gene. The resulting high local concentration of hSDF-1α gene results in higher levels of homing of stem cells to the damaged tissue.
  • Example 1 Construction of Plasmids
  • To make the transactivator plasmid, the ODD (amino acids 394-603; see Huang et al. Proc Natl Acad Sci USA. 95:7987, 1998) was amplified by PCR from pCEP4/HIF-1alpha (Semenza et al. J Biol Chem. 271:32529, 1996) and inserted in frame between the coding sequence of GAL4 DBD and p65AD in pGS-MLC to generate pGS-MLC-ODD (see FIG. 1). pGS-CMV is a plasmid that expresses a chimeric transcription factor consisting of the yeast GAL4 DBD (amino acids 1-93; Keegan et al., Science. 231:699, 1986) and the human p65AD (amino acids 283-551; Schmitz et al., EMBO J. 10:3805, 1991) from NF-κB under the control of a 281bp MLC-2v promoter.
  • The reporter plasmid, pGene-hSDF-1α-6his (FIG. 1), encodes stem cell-attracting chemokine SDF-1α driven by six copies of a 17bp GALA UAS (Giniger et al., Cell. 40:767, 1985) and an adenovirus E1b TATA box (Lillie and Green, Nature. 338:39, 1989). It was derived from pGene/V5-His/lacZ (INVITROGEN, Carlsbad, Calif.) by replacing the lacZ coding sequence with a hSDF-1α cDNA. The identity of clones was confirmed by nucleotide sequence analysis.
  • Example 2 Testing the Plasmids In Vivo
  • Preparation of bone marrow stem cell—Bone marrow was harvested from femur and tibia of BALB/c mice. Mononuclear cells isolated from bone marrow were sorted to separate Lin cells with Lin cocktail by SPINSEP cell enrichment procedure (Stem Cell Technologies Inc., Vancouver, Canada). The Lin bone marrow stem cells were enriched for c-kit+ cells using a c-kit MACS microbead system (MACS bead and apparatus from Dynal Biotech, Oslo, Norway; biotin-conjugated rat anti-mouse c-kit monochonal antibody from BD biosciences, San Jose, Calif.). After isolation the Linc-kit+ cells were resuspended in staining medium containing PKH26-GL (Sigma Company, St. Louis, Mo.). Referring to FIG. 2, the mouse Linc-kit+ stem cells were relatively homogenous in appearance. The labeling efficiency with PKH26 was approximately 100%.
  • MI generation, gene therapy, and stem cell therapy—Age-matched 8-week-old BALB/c mice were used in a MI model. Mice were anesthetized, intubated and mechanically ventilated. A thoracotomy incision was made in the fourth intercostals space and the proximal left anterior descending (LAD) coronary artery was surgically occluded with an 8-0 non-absorbable suture. Successful coronary occlusion was confirmed by a change of ST segment on the EKG from a limb lead. In sham mice, ligation was placed beside the coronary artery. Simultaneously, adult BALB/c mice (n=10/group) were injected intra-myocardially with two plasmids: pGS-MLC-ODD (40 μg) and pGene-SDF-1α-6his (20 μg), while control mice (n=10) received saline injection only. PKH26-labeled Linc-kit+ stem cells were systemically injected into the mice.
  • Western blot—Heart and other tissue samples from the mice were homogenized in Tris (12.5 mM/1) buffer (pH 6.8) containing glycerol (10%), SDS (4%), and β-mercaptoethanol (1.8%). Twenty-five μg of soluble protein from each sample was separated by gel electrophoresis (using a 12% Ready Gel gel from BIORAD, CA, USA), and Western blotting was carried out using and antibody to His (C-term) (1:1,000, INVITROGEN Inc., Carlsbad, Calif.). The relative amounts of HSDF-1α protein expression were determined by densitometric analysis.
  • Assessment of SDF-1α and identification of stem cells in the heart—Hearts were collected from the experimental animals 1 week after MI for detection of SDF-1α expression and identification of stem cells that localized to ischemic heart tissue. The expression of SDF-1α in ischemic heart tissue was detected by immunohistochemistry using an antibody to hSDF-1α or 6his using DAKO EnVision Systems Alkaline Phosphatase kit (DAKO, Cambridge, Mass.). Confocal imaging and immunofluorescent staining was also used to identify both the expression of hSDF-1α (using a FITC-labeled secondary antibody) and the labeled transplanted stem cells (previously labeled with PKH26).
  • Example 3 Results
  • Mice whose hearts were transfected with the MLC-ODD dual plasmid system then subjected to ischemia by ligation of LAD showed higher tissue-specific expression of hSDF-1α in the ischemic mouse heart tissue than in the spleen, liver, lung, kidney and muscle at 1 week after intracardiac plasmid injection (see Western blot shown in FIG. 3). One week after intracardiac injection of plasmid, immunohistochemical staining showed that hSDF-1α was clearly present in ischemic myocardium (FIG. 4A) of mice and absent in the control (mice that did not undergo MI; FIG. 4B). Transplanted stem cells were attracted to the SDF-1α-expressing peri-infarct zone (the ischemic tissue) in a dose-dependent manner with increasing time (FIGS. 5A-5D). This amplification did not compromise the cardiac specificity of MLC-2v promoter, which still maintained the previously observed expression profile (i.e., higher in ischemic heart than in the non-cardiac tissues).
  • Other Embodiments
  • It is to be understood that while the invention has been described in conjunction with the detailed description thereof, the foregoing description is intended to illustrate and not limit the scope of the invention, which is defined by the scope of the appended claims. Other aspects, advantages, and modifications are within the scope of the following claims.
  • All patents, patent applications, provisional applications, and publications referred to or cited herein are incorporated by reference in their entirety, including all figures and tables, to the extent they are not inconsistent with the explicit teachings of this specification.
  • It should be understood that the examples and embodiments described herein are for illustrative purposes only and that various modifications or changes in light thereof will be suggested to persons skilled in the art and are to be included within the spirit and purview of this application.

Claims (28)

1. A composition comprising:
(a) a first polynucleotide comprising:
(1) a gene switch/biosensor comprising a nucleic acid sequence encoding a physiological stimulus-sensitive chimeric transactivator, and
(2) an operatively linked tissue-specific promoter; and
(b) a second polynucleotide comprising a nucleic acid sequence encoding a stem cell-attracting chemokine.
2. The composition of claim 1, wherein said physiological stimulus-sensitive chimeric transactivator is oxygen-sensitive and comprises a GAL4 DNA-binding domain (DBD), a oxygen-dependent degradation domain (ODD), and a p65 activation domain (p65 AD); and wherein said second polynucleotide further comprises a GAL4 upstream activating sequence (UAS) linked to said nucleic acid sequence of said second polynucleotide, and wherein in response to hypoxia, said transactivator binds to the GAL4 UAS, resulting in expression of said nucleic acid sequence encoding said stem cell-attracting chemokine.
3. The composition of claim 1, wherein said tissue-specific promoter is specific for expression in a tissue selected from the group consisting of kidney, epithelial tissue, endothelial tissue, liver, brain, neural tissue, thymus, and pancreas.
4. The composition of claim 1, wherein said tissue-specific promoter is selected from the group consisting of CLCN5, rennin, androgen-regulated protein, sodium-phosphate cotransporter, renal cytochrome P-450, parathyroid hormone receptor, kidney-specific cadherin, E-cadherein, estrogen receptor (ER) 3, endoglin, ICAM-2, human phenylalanine hydroxylase (PAH), human C-reactive protein (CRP), human enolase (ENO3), thy-1 antigen, gamma-enolase, glial-specific glial fibrillary acidic protein (GFAP), human FGF1, GATA transcription factor, and pancreas duodenum homeobox 1 (PDX-1).
5. The composition of claim 1, wherein said tissue-specific promoter is a cardiac-specific promoter.
6. The composition of claim 1, wherein said tissue-specific promoter is a cardiac-specific promoter selected from the group consisting of the ventricular form of the MLC-2v promoter, a fragment of the native MLC-2v promoter, alpha myosin heavy chain promoter, and myosin light chain-2 promoter.
7. The composition of claim 1, wherein said stem cell-attracting chemokine is selected from the group consisting of SCF, vascular endothelial growth factor (VEGF), granulocyte colony-stimulating factor (G-CSF), an integrin, and hSDF-1 alpha.
8. The composition of claim 1, wherein said stem cell-attracting chemokine comprises hSDF-1alpha.
9. The composition of claim 1, wherein said physiological stimulus is associated with cell injury.
10. The composition of claim 1, wherein said physiological stimulus-sensitive chimeric transactivator is sensitive to hypoxia or an elevated glucose level.
11. The composition of claim 1, wherein the stem cell attracted by said stem cell-attracting chemokine is from an anatomical site selected from the group consisting of bone marrow, peripheral blood, brain, spinal cord, dental pulp, blood vessels, skeletal muscle, epithelia of the skin, epithelia of the digestive system, cornea, retina, liver, and pancreas.
12. The composition of claim 1, wherein said composition is a recombinant viral vector.
13. The composition of claim 1, wherein said composition is a recombinant viral vector selected from the group consisting of an adenovirus, an adeno-associated virus, a herpes simplex virus, a lentivirus, and a retrovirus.
14. The composition of claim 1, wherein said composition is a recombinant adeno-associated viral vector.
15. The composition of claim 1, wherein said composition is a non-viral vector.
16. The composition of claim 1, wherein said composition is a plasmid.
17. A method of targeting a stem cell to a target tissue in a human or non-human animal subject, the method comprising administering to the target tissue the composition of claim 1.
18. The method of claim 17, wherein the composition is administered to host cells by a delivery method selected from the group consisting of microinjection, electroporation, calcium phosphate transfection, DEAE dextran transfection, polylysine conjugates, receptor-mediated uptake system, liposomal delivery, lipid-mediated delivery system, matrix-impregnated delivery system, microparticle encapsulation, intra-cellular targeting ligand, virion-like particles, and viruses.
19. The method of claim 17, wherein the target tissue is selected from the group consisting of bone marrow, blood, brain, blood vessels, spinal cord, peripheral nerve, skeletal muscle, cornea, retina, lungs, liver, and pancreas.
20. The method of claim 17, wherein said administering comprises administering the composition to host cells in vitro and subsequently administering the host cells to a subject.
21. The method of claim 17, wherein said administering comprises administering the composition to cells of the target tissue in vivo.
22. The method of claim 17, wherein following said administering, the nucleic acid sequence encoding the stem cell-attracting chemokine is expressed in the target tissue, and wherein the chemokine attracts endogenous stem cells or endogenous progenitor cells to the target tissue.
23. The method of claim 17, wherein said method further comprises co-administering stem cells to the target tissue.
24. The method of claim 17, wherein said method further comprises administering an agent that causes stem cells to migrate to the target tissue.
25. The method of claim 17, wherein the target tissue is damaged.
26. The method of claim 17, wherein the target tissue is at increased risk of damage.
27. A composition comprising:
(a) a first polynucleotide comprising:
(1) a tissue-specific promoter,
(2) a nucleic acid sequence encoding a GAL4 DNA-binding domain,
(3) a nucleic acid sequence encoding an oxygen-dependent degradation domain (ODD) polypeptide, and
(4) a nucleic acid sequence encoding a p65 activation domain; and
(b) a second polynucleotide comprising:
(1) at least two copies of a GAL4 upstream activating sequence (UAS),
(2) a TATA element, and
(3) a nucleic acid sequence encoding a stem cell-attracting chemokine.
28. A method of targeting a stem cell to a target tissue in a human or non-human animal subject, the method comprising administering to the target tissue the composition of claim 27.
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