US20060275263A1

US20060275263A1 - Cell proliferation inhibitory proteins and polynucleotides, antisense polynucleotides to the polynucleotides, cell proliferation inhibitors using the foregoing, cancer diagnostic agents, cancer therapeutic agents and compositions for gene therapy

Info

Publication number: US20060275263A1
Application number: US11/434,813
Authority: US
Inventors: Masayoshi Namba; Toshiya Tsuji
Original assignee: Hiromi Kumon
Current assignee: Hiromi Kumon
Priority date: 1999-11-19
Filing date: 2006-05-17
Publication date: 2006-12-07
Also published as: CN1402784A; JP2010163440A; JP3813872B2; EP1234877A4; US20100204308A1; JP2006158399A; AU6865600A; JP4509018B2; EP1234877A1; WO2001038528A1; EP1234877B1; US9243048B2; DE60044503D1

Abstract

The genes the expression of which is reduced or disappeared in immortal cells including cancer cells are isolated, their DNA sequences are determined, the genes are expressed to produce cell proliferation inhibitory proteins, and the genes and the proteins are utilized as agents for diagnosis or treatment, including the genetic diagnosis of or the gene therapy of diseases such as cancer.

Description

RELATED APPLICATIONS

This Application is a Rule 1.53(b) Divisional Patent Application of U.S. patent application Ser. No. 10/130,360 filed on Oct. 7, 2002 and having a 35 U.S.C. §371(c) date of Oct. 7, 2002, which is a National Phase of International Application No. PCT/JP00/15879 filed Aug. 30, 2000 that designated the U.S. and was not published under PCT Article 21(2) in English, and this divisional application claims, via the aforesaid U.S. Application and the aforesaid International Application, the foreign priority benefit of and claims the priority from Japanese Application No. 1999-330604, filed Nov. 19, 1999, the complete disclosures of all the prior applications, including any and all sequence listings (as well as paper copy, disc copy and/or diskette copy), are incorporated herein by reference.

TECHNICAL FIELD

This invention relates to genetic information that can be useful in the treatment and diagnosis of diseases caused by the immortalization of cells such as cancer, as well as to its use. More specifically, the invention relates to genetic information than can express useful proteins for the treatment of diseases such as cancer which are expressed in immortal cells including cancer cells and which inhibit the proliferation of the cells, as well as to its use. Particularly, the invention relates to genes encoding the cell proliferation inhibitory proteins whose expression is reduced or disappeared in the immortal cells including cancer cells, as well as to their use for diagnostic agents or therapeutic agents.

BACKGROUND ART

Normal human cells are hardly immortalized and age. The normal human cells are destined to be aging according to the mechanism of counting the times of cell division (senescence mechanism). Ordinarily, the a living tissue gradually lose their proliferation capability and display aged morphology after having repeated subculturing (or division) 20 to 80 times. When a cell ages, it shows several morphological and biochemical changes, including cytomegalic tendency, squamous tendency, changes in extracellular matrix components, non-response to stimulation by mitogens and a decline in the expression function of proliferation regulating genes and it ceases to divide; therefore, it will be easy to be so judged.
However, when the cells are subjected to treatment with a carcinogen, or treatment by radiation during subculturing, a very small portion of the cells escape from this cell senescence and continue to grow, thereby forming a colony. The cells that have thus acquired the infinite proliferation capability (or that has experienced the failure of senescence mechanism) can be continuously cultured and do not die even after the passage of a finite number of cell generations: they are referred to as “immortal cells.”
When a normal cell and an immortal cell are fused, the resulting hybrid cell displays finite division capability. Further, when immortal cells are fused with each other, there is obtained a hybrid cell displaying the finite division capability. This suggests that the immortalization is genetically recessive to senescence in human cells and that the deficiency of a particular gene (immortalization-suppressing gene) which is involved in the mechanism of counting the times of cell division (senescence mechanism) or the loss of its function is needed for cell immortalization.
Although it is not easy to directly prepare cancer cells from normal human cells, there is a close relation between the immortalization of cells and the cancerization of cells. It is beginning to be understood that in an experimental system where cells undergo cancerization under culturing conditions the normal human cells evade the senescence mechanism which strongly acts on their proliferation in a negative manner and mutate in a multistage such that the cells change into the immortalization stage allowing infinite proliferation and then into the cancerization stage with relative ease. For example, when the so-called oncogenes such as p53 mutant gene and Rb mutant gene are expressed in normal human cells, neither cancerization nor immortalization occurs; however, once the cells have been immortalized, they will easily turn cancerous by the oncogenes (Namba, M. et al., Crit. Rev. Oncogen., 7:19-31, 1996). This strongly suggests that the immortalization of cells is an important step in the cancerization of cells. Therefore, an analysis of the immortalization stage is critical to elucidating the carcinogenesis of human cells.
For proliferation inhibitory genes in cancer cells, there are mentioned more than ten kinds of genes, including Rb gene in retinoblastoma, p53 gene in colon cancer, and WT gene in Wilms tumor. Particularly, a preferred proliferation inhibitory gene is p53 and gene therapy using p53 has already begun (Li, H. et al., Clinical Cancer Res., 5, 637-642, 1999). Since immortalization of the cells is involved in the cancerization, not only cancer-suppressing genes but also the cell proliferation inhibition by the immortalization-suppressing genes will be effective treatment of cancer.
Thus far, there have been reported as genes associated with cell senescence and immortalization, Sdil (Noda, A. et al., Exp. Cell. Res., 211: 90-98, 1994), SEN6 (Banga, S. S. et al., Oncogene, 14: 313-321, 1997), SEN6A (Sandhu, A. K. et al., Oncogene, 12: 247-252, 1996), ING1 (Garkavtsev, I. and Riabowol, K., Mol. Cell. Biol., 17: 2014-2019, 1997), Hic-5 (Shibanuma, M. et al., Mol. Cell. Biol., 17: 1224-1235, 1997), among others. However, the correlation between these genes and the aging, immortalization, or cancerization of human cells has not been elucidated.

DISCLOSURE OF THE INVENTION

In view of the aforementioned circumstances this invention aims at identifying the complete lengths cDNA of an immortalization-suppressing genes and providing the information on said immortalization-suppressing gene and the function of proteins encoded by the genes.
As a result of having pursued diligent investigations to solve the above-stated problems, the present inventors isolated immortalization-suppressing genes encoding the proteins the expression of which is reduced or disappeared in the immortal cells including cancer cells, and identified plural nucleotides containing DNA sequences that corresponded to the translation region with 1050 bp (SEQ ID NO:2) encoding the protein having a 350 amino acid sequence (SEQ ID NO:1). They also found that the protein set forth in SEQ ID NO:1 in the Sequence Listing possessed cell proliferation inhibitory activity.
The present inventors further found that the immortalization-suppressing genes can be useful markers in the diagnosis of diseases such as cancer caused by the immortal cells and are genetic information capable of expressing proteins effective for the treatment of diseases such as cancer; and thus they completed this invention.
Specifically, this invention provides the proteins described in 1-2 below and polynucleotides:
1. A protein comprising an amino acid sequence derivable from the substitution or the deletion of one or more amino acids in the amino acid sequence set forth in SEQ ID NO:1 in the Sequence Listing, or from the addition of one or more amino acids to the amino acid sequence set forth in SEQ ID NO:1 in the Sequence Listing, said protein possessing cell proliferation inhibitory activity.
2. A polynucleotide comprising a DNA sequence derivable from the substitution or the deletion of one or more DNA in a DNA sequence selected from the group consisting of SEQ ID NO:2 in the Sequence Listing, SEQ ID NO:3 in the Sequence Listing, and SEQ ID NO:4 in the Sequence Listing, or from the addition of one or more DNA amino acids to a DNA sequence selected from the group consisting of SEQ ID NO:2, SEQ ID NO:3, and SEQ ID NO:4 in the Sequence Listing, said polynucleotide possessing cell proliferation inhibitory activity.
This invention also provides an antisense polynucleotide comprising an antisense DNA to a DNA comprising any one of DNA sequences described in 3-5 below, an antisense RNA to an RNA encoded by any one of DNA sequences described in 3-5 below, or a derivative of the foregoing:
3. A DNA sequence set forth in SEQ NO:2 in the Sequence Listing.
4. A DNA sequence set forth in SEQ NO:3 in the Sequence Listing.
5. A DNA sequence set forth in SEQ NO:4 in the Sequence Listing.
This invention also provides a cell proliferation inhibitory agent or a cancer therapeutic agent comprising a protein or a polynucleotide as described in 6-9 below:
6. A protein comprising the amino acid sequence set forth in SEQ ID NO:1 in the Sequence Listing.
7. A polynucleotide comprising the DNA sequence set forth in SEQ ID NO:2 in the Sequence Listing.
8. A polynucleotide comprising the DNA sequence set forth in SEQ ID NO:3 in the Sequence Listing.
9. A polynucleotide comprising the DNA sequence set forth in SEQ ID NO:4 in the Sequence Listing.
This invention also provides a cancer diagnostic agent characterized by using a protein as described in 1 or 6 above.
This invention also provides a cancer diagnostic agent characterized by using a polynucleotide as described in any of 7-9 above.
This invention further provides a composition for gene therapy comprising a polynucleotide as described in any of 7-9 above.
In the composition for gene therapy described above, the therapeutic gene is preferably contained in a viral vector; and more preferably, said viral vector is an Adenovirus vector.
Finally, this invention provides a method for differentiating a cancer cell comprising:
providing a fluorescently-labeled antibody against a protein comprising the amino acid sequence set forth in SEQ ID NO:1 in the Sequence Listing;
staining with the fluorescently-labeled antibody, a cell suspected of being a cancer cell; and
determining the presence or absence of fluorescence emission.

BRIEF DESCRIPTION OF THE DRAWINGS

FIG. 1 is a diagram showing sequence alignment that represents a homology comparison between REIC (reduced expression in immortal cell) protein used in this invention and hDkk3 protein or RIG7-1 protein.
FIG. 2 is a representation corresponding to an autoradiograph showing the results of Northern blotting for the comparison of expression of REIC gene among a variety of human cell lines.
FIG. 3 is a schematic representation showing the construction of a REIC/pTracer expression plasmid used in this invention.
FIG. 4 is a graph showing the test results of ³H thymidine incorporation into immortal KMST-6 cells according to this invention.
FIG. 5 is a graph showing the test results of ³H thymidine incorporation into Saos2 osteosarcoma cells according to this invention.
FIG. 6 is a schematic representation showing the construction of a REIC/pGEX-2T expression plasmid used in this invention.
FIG. 7 is a representation corresponding to a photograph that shows the double-staining of KMS-6 cells by the immunofluorescence technique.
FIG. 8 is a representation corresponding to an electrophoresis photograph that shows a 553 bp amplified product obtained in Example 10.
FIG. 9 is a map of human chromosome 11. In the map at 11p15 there are shown LOH frequencies (%) in various cancer tissues that have been reported and the names of STS genomic markers corresponding to the respective LOHs. The cancer tissues as shown tother with the LOH frequency values are from B (breast cancer), E (esophageal cancer), S (gastric cancer), H (hepatocellular carcinoma), HN (head and neck cancer), and P (prostate cancer).
FIG. 10 is a diagram showing sequence alignment that represents homology comparison between the REIC gene according to this invention and the D11S2388 marker shown in FIG. 9.
FIG. 11A is a representation corresponding to an autoradiograph showing the results of Northern blotting when the expression of the REIC gene in the tissues from a group of patients with non-small-cell lung cancer were examined. “N” indicates a non-cancerous tissue and “T” indicates a cancerous tissue.
FIG. 11B is a representation corresponding to an autoradiograph showing the results of Northern blotting when the expression of the REIC gene in the tissues from a group of patients with hepatocellular carcinoma were examined. “N” indicates a non-cancerous tissue and “T” indicates a cancerous tissue.
FIG. 11C is a representation corresponding to an autoradiograph showing the results of Northern blotting when the expression of the REIC gene in the tissues from a plurality of patients with esophageal cancer were examined. “N” indicates a non-cancerous tissue and “T” indicates a cancerous tissue.
FIG. 11D is a representation corresponding to an autoradiograph showing the results of Northern blotting when the expression of the REIC gene in the tissues from a plurality of patients with gastric cancer were examined. “N” indicates a non-cancerous tissue and “T” indicates a cancerous tissue.
FIG. 11E is a representation corresponding to an autoradiograph showing the results of Northern blotting when the expression of the REIC gene in the tissues from a plurality of patients with colon cancer were examined. “N” indicates a non-cancerous tissue and “T” indicates a cancerous tissue.
FIG. 12 is a representation corresponding to an autoradiograph showing the results of Southern blotting when an RFLP analysis of the REIC gene in various cell lines derived from the hepatoma was carried out.
FIG. 13A is a representation corresponding to an autoradiograph showing the results of Northern blotting when changes in the expressed amount of the REIC gene at the cell cycle of KMS-6 were examined.
FIG. 13B is a graph showing the test results of ³H thymidine incorporation into KMS-6 cells at the cell cycle of KMS-6 similarly to FIG. 13A.
FIG. 14 is a representation corresponding to an autoradiograph showing the results of Northern blotting when changes in the expressed amount of the REIC gene in the presence or absence of TGF-β were compared.
FIG. 15 is a schematic representation showing the construction of a pUC119/REIC expression plasmid used in this invention.
FIG. 16 is a schematic representation showing the construction of a pAxCAwt cosmid used in this invention.
FIG. 17 is a schematic representation showing the construction of a pAxCAREIC cosmid vector used in this invention.
FIG. 18 is a schematic representation showing the treatment of Adenovirus to prepare an Adenovirus vector used in this invention.

BEST MODE FOR CARRYING OUT THE INVENTION

The constitution and preferred embodiments of this invention will be described in detail hereafter.
As used in this specification, amino acids, proteins, DNA sequences, nucleic acids, and the like are denoted in terms of various abbreviations according to the recommendations of IUPAC and IUB, “Guidelines for the Preparation of Specification Containing Base Sequences or Amino Acid Sequences” (Edited by the Japanese Patent Office), and conventional designations in the art to which this invention pertains.
As used in the specification, “polynucleotide(s)” may be embodied by a variety of forms such as single-stranded or double-stranded genomic DNA, cDNA, mRNA and CRNA.
In the specification, unless stated otherwise, DNA (including cDNA) refers to that comprising double strands, a sense strand and an antisense strand; and antisense DNA or antisense RNA refers to that comprising a single strand.
Further in the specification, the term “immortalization-suppressing” may be used in the same context as “cell proliferation inhibitory.” Also, the term, “immortal cell(s)” is used to encompass cancer cell(s).
Also, the “antisense polynucleotide(s)” is encompassed by “polynucleotide(s),” but it is denoted “antisense polynucleotide(s)” when said polynucleotide is specifically stated to be an antisense strand.
(Immortalization-Suppressing Genes and Proteins)
One of the immortalization-suppressing genes used in this invention (which will be referred to as “gene(s) according to this invention” hereafter) is the isolated and purified polynucleotide (SEQ ID NO:2) comprising a DNA sequence encoding a protein comprising the 350 amino acid sequence set forth in SEQ ID NO:1 in the Sequence Listing, said protein possessing the cell proliferation inhibitory activity. The genes according to this invention also encompass a polynucleotide comprising the DNA sequence set forth in SEQ ID NO:3 or SEQ ID NO:4. The genes according to this invention further encompass a polynucleotide comprising a DNA sequence derivable from the substitution or the deletion of one or more DNA in any DNA sequence of the DNA sequence set forth in SEQ ID NO:2 in the Sequence Listing, the DNA sequence set forth in SEQ ID NO:3 in the Sequence Listing, and the DNA sequence set forth in SEQ ID NO:4 in the Sequence Listing, or from the addition of one or more DNA amino acids to any DNA sequence of the DNA sequence set forth in SEQ ID NO:2 in the Sequence Listing, the DNA sequence set forth in SEQ ID NO:3 in the Sequence Listing, and the DNA sequence set forth in SEQ ID NO:4 in the Sequence Listing.
When the protein comprising the amino acid sequence set forth in SEQ ID NO:1 is produced in vivo or in vitro and is to be utilized in this invention, it is not limited to the expression of a polynucleotide comprising the DNA sequence set forth in SEQ ID NO:2, SEQ ID NO:3 or SEQ ID:4. Any combination of codons corresponding to each amino acid constituting the aforementioned amino acid sequence may be used as the gene according to this invention to carry out the expression efficiently in a variety of hosts differing in the use frequency of codons. Accordingly, the scope of the genes according to this invention encompasses genes optionally containing such degenerate codons, other than the polynucleotides as defined above.
The cell proliferation inhibitory proteins used in this invention (which will be referred to as “protein(s) according to this invention hereafter) comprise a protein comprising the amino acid sequence set forth in SEQ ID NO:1; but they also encompass variants of said protein having amino acid sequences that have been modified from the amino acid sequence set forth in SEQ ID NO:1 by the substitution or the deletion of any one or more amino acids or by the addition of any one or more amino acids while retaining substantially the same cell proliferation inhibitory activity as has said protein. These variants typically include natural allelic variations and variations between animals of different species and have high homology to the amino acid sequence set forth in SEQ ID NO:1. In this invention the DNA sequences of polynucleotides may be altered correspondingly so that they should be able to encode the aforementioned variants. Desirable alterations of DNA sequences can be carried out by methods known to one skilled in the art such as site-specific mutation.
The protein consisting of the amino acid sequence set forth in SEQ ID No:1 has been reported as hDkk3 protein which is a human homolog of Dkk1 protein from Xenopus (Krupnik, V. E. et al., Gene 238, 301-313, 1999). XDkk1 is a protein of the excretory type in the Spemann formation that has a potent head-inducing capability in the embryo of Xenopus and is involved in the differentiation of the embryo and the formation of the head part, and has been reported as a signal transduction-inhibiting factor for the Wnt family signaling molecules of the excretory type (Cadigan, K. M. and Nusse, R., Genes Dev. 11, 3286-3305, 1997). Krupnik et al. further have reported that although both hDkk1 and hDkk4 have inhibitory activity against the Wnt activity of the signaling system for the Wnt family, hDkk3 does not have the inhibitory activity against the Wnt activity. The Wnt family proteins have been suggested to be cancer-related genes (Candigan, loc. cit.). However, the report by Krupnik et al. does not mention the correlation between hDkk3 and the Wnt family proteins. Therefore, prior to this invention there has been no information whatsoever that would suggest possible correlation between this hDkk3 protein and the immortalization or cancerization of cells.
For a molecule that is homologous to the protein comprising the amino acid sequence set forth in SEQ ID NO:1 or to the polynucleotide comprising the DNA sequence set forth in SEQ NO:2, RIG protein the expression of which is reduced in human glioma cells has been reported (Ligon, A. H., et al., J. Neuro Virology 4, 217-226, 1998). However, the RIG protein has low homology to the protein comprising the amino acid sequence set forth in SEQ ID NO:1 and thus differs from the latter protein according to this invention with respect to both function and structure.
(Expression of the Immortalization-Suppressing Genes in Various Cell Lines)
It is anticipated that the genes according to this invention, being immortalization-suppressing genes, are expressed in various human cells. When its expression in various human cancer cells and immortal cells was studied, it was found that the expression was disappeared in nine human cancer cell lines and one human immortal cell line and the expression was reduced in three human immortal cell lines, out of 10 human cancer cell lines obtained from various tissues such as lung cancer, hepatoma, lymphoma, and osteosarcoma. Furthermore, when the gene according to this invention was forced to express in a human immortal cell, the proliferation of this cell was found to be significantly inhibited. Accordingly, the genes according to this invention have the proliferation inhibitory activity against these cells.
(Chromosomal Mapping)
When the chromosomal mapping of the gene according to this invention was conducted, it was found that the gene could be mapped on human chromosome 11 short arm 15 (11p15). In the 11p15 region there have been reported the following genes or the genes that cause the following diseases to be present: Beckwith-Wiedemann syndrome, dopamine receptor D4, hemoglobin β-globin chain, drepanocytosis, cdk inhibitor p₅₇ ^kiP2, H-ras, IGF-II, insulin, QT elongation syndrome, adrenal cortex cancer, Wilms tumor 2, rhabdomyosarcoma, lactic acid dehydrogenase, Niemann Pick cell disease, adrenal cortex thyroid gland hormones, and Usher's syndrome. The instability of chromosome at 11p15 has been reported in various solid cancers such as non-small-cell lung cancer, hepatoma, gastric cancer, esophageal cancer, head and neck cancer, prostate cancer, and ovarian cancer (Lalande, M., Annu. Rev. Genet., 30, 173, 1997; Freinberg, A. P., Cancer Res., 59, 1743-1746, 1999). Further in the experiment where human chromosomal DNA is introduced into cell lines derived from pulmonary adenomatosis and rhabdomyoma, cancer-suppressing genes have been reported to be mapped on 11p15 (O'Briant, K., et al., Anticancer Res., 17, 3243-3251, 1997; Reid, L. H., et al., Hum. Mol. Genet., 5, 239-247, 1996).
These reports suggest the possibility that the instability of chromosomes such as the loss of heterozygosity (LOH) and genome-imprinting brings the reduced expression of the genes according to this invention and it causes cell cancerization to be induced. Further, it is strongly suggested that said genes are not only cell immortalization-suppressing genes, but also cancer-suppressing genes.
(Availability of the Immortalization-Suppressing Genes)
The genes according to this invention can be obtained based on the DNA sequence information disclosed by this specification following gene manipulation techniques (for example, Molecular Cloning 2nd ed., Cold Spring Harbor Laboratory Press: 1989).
In practice, the genes according to this invention can be obtained by concentrating and selecting cDNA of genes that are expressed in normal cells in a high degree but in immortal cells in a low degree according to Represetational Difference Analysis (RDA), as will be shown in the examples. Furthermore, the full-length cDNA of the gene can also be selectively obtained from a long-strand cDNA library prepared by size fractionation, the oligo-capping method or the Race method. Specifically, KMS-6 cells, which were aged normal cells, and KMST-6 cells, which were immortal cells, could produce a novel cDNA with at least 266 bp showing reduced expression in the immortal cells through the RDA method. By employing similar treatment, it is possible to obtain homologs encompassed by the genes according to this invention from the materials of various immortal cells and the normal cells which are their parent cell line. One skilled in the art can readily select the cell lines required as the materials.
DNA sequence of the thus obtained gene is based to prepare a specific probe with an arbitrary sequence and length; the probe can be used to screen a human heart cDNA library by colony hybridization, plaque hybridization, or the like, and cDNA containing an immortalization-suppressing gene can be isolated. Similar screening can also be carried out on a human heart cDNA library prepared by the oligo-capping method and cDNA containing an immortalization-suppressing gene can be isolated.
Furthermore, the desired cDNA clones can be isolated from various human cDNA libraries that are commercially available or from cDNA libraries prepared from various cultured cells and tissues according to conventional methods. By using an amino acid sequence corresponding to the DNA sequence of the aforementioned gene and antibodies specific thereto, the desired cDNA clones can also be selected according to immunological screening methods. In addition, specific PCR primers are designed based on the DNA sequence of the gene fragment described above as appropriate. PCR can then be carried out following a conventional method to select the desired cDNA clones retaining the amplified DNA fragment from the cDNA library.
(Gene Expression Systems)
When the gene according to this invention is to be utilized, preferably a polynucleotide at least containing the DNA sequence set forth in SEQ ID NO:2 in the Sequence Listing or a DNA sequence consensus thereto is incorporated into a suitable expression cassette and/or an suitable expression vector and the protein comprising the amino acid sequence set forth in SEQ ID No:1 or a variant thereof is expressed in a targeted human cell.
As for the expression cassettes, any cassettes without any particular limitations may be used insofar as they can allow genes according to this invention to express in the target cells. One skilled in the art can readily select such expression cassettes. Preferably, they are expression cassettes capable of gene expression in the cells derived from an animal, more preferably, expression cassettes capable of gene expression in the cells derived from a mammal, and most preferably expression cassettes capable of gene expression in the cells derived from a human.
The expression cassette can employ, in addition to the gene according to this invention, any sequence among a promoter or enhancer for the transcription of the gene, a poly-A signal, a marker gene for labeling and/or selecting the cell into which the gene has been introduced, a virus-derived gene sequence for the efficient insertion of gene into cellular genomic DNA sequences, and a signal sequence for extracellularly secreting the substance that is produced by gene expression and that acts as drug and/or for having the substance remained at localized sites within a cell.
The promoters that can be used in the expression cassettes include: for example, virus-derived promoters from Adenovirus (Ad), cytomegalovirus (CMV), human immunodeficiency virus (HIV), Adeno-associated virus (AAV), simian virus 40 (SV40), Rous sarcoma virus (RSV), herpes simplex virus (HSV), murine leukemia virus (MoMLV), Sinbis virus, Sendai virus (Sev), hepatitis type A virus (HAV), hepatitis type B virus (HBV), hepatitis type C virus (HCV), papilloma virus (HPV), human T cell leukemia virus (HTLV), vesicular stomatitis virus, influenza virus, Japanese encephalitis virus, JC virus, parbovirus B19, poliovirus, and the like; mammal-derived promoters such as α-subunit of the signal recognition particle receptor (SR-α), myelin basic protein (MBP), glial-specific glial fibrillary acidic protein (EF1-α), glyceraldehyde-3-phosphate dehydrogenase (GAPDH), multidrug resistance gene (Mdr1), albumin α-fetoprotein (AFP), heat shock protein (HSP), hypoxia-inducing protein (HIP); and chimera type promoters such as a chimera promoter (CAG) comprising a CMV initial phase enhancer/chicken β-actin promoter/β-globinpolyA, and a chimera promoter comprising a CMV initial phase enhancer/α-skeletal actin promoter.
Also, there may be used a gene and LTR to form LTR of the chimera type wherein the U3 region of LTR has been replaced by a promoter such as CAG, CMV, RSV, TK, SV40, SR-α, MBP, β-actin, or EF1-α: LTR is a promoter derived from a retrovirus capable of expressing the gene.
The expression cassette containing the gene according to this invention can be incorporated into a cosmid, a plasmid, or any virus-derived recombinant vector that is compatible with a host cell. There are no limitations to the kind, the molecular weight, the form, or the like of such a recombinant viral vector. Specifically, there are mentioned DNA and/or RNA viruses, and (+) and/or (−) chains, but no particular limitations should be imposed.
The recombinant viral vectors may be any viral vector of MoMLV vector, HSV vector, Adenovirus vector, AAV vector, HIV vector, Sev vector and the like. One or more proteins among the constituent protein group of a viral vector are substituted by the constituent proteins of a different species of virus, or alternatively a part of the nucleic acid sequence constituting genetic information is substituted by the nucleic acid sequence of a different species of virus to form a viral vector of the pseudo-type, which can be used in this invention. Further, viruses having a host spectrum other than human are usable as the recombinant viral vector insofar as they will be efficacious.
As described in detail above, the gene according to this invention can be incorporated into an expression vector of a microorganism or eucaryote that serves as a host cell to produce a transformed microorganism or eucaryote, from which the protein comprising the amino acid sequence set forth in SEQ ID NO:1 can be produced easily and stably by culturing. The expression vector selected among the named ones above alone, or after forming a complex with a variety of medically acceptable carriers such as cationic polymers, polylysine, and polylysine-serine, can be introduced into host cells.
(Antisense Polynucleotides)
For the sense strand of DNA constituting the gene according to this invention and RNA encoded by the DNA, antisense DNA and antisense RNA exist respectively each of which comprises a base sequence complementary to the base sequence of the foregoing DNA or RNA. Specifically, such antisense DNA has a DNA sequence that is complementary to at least part of the DNA sequence set forth in SEQ ID NO:2, SEQ ID NO:3, or SEQ ID NO:4. Also, such antisense RNA has a RNA sequence that is complementary to at least part of RNA encoded by DNA comprising the DNA sequence set forth in SEQ ID NO:2, SEQ ID NO:3, or SEQ ID NO:4. Preferably, the antisense DNA or the antisense RNA is complementary to part of the DNA sequence set forth in SEQ ID NO:2 or to part of the corresponding RNA sequence. Therefore, the antisense polynucleotide comprising the DNA or the RNA hybridizes to the DNA or the RNA that carries genetic information during the process of production of the protein according to this invention from the gene according to the invention (transcription, translation and etc.), and affects the normal flow of transmission of the genetic information, thus inhibiting the biosynthesis of said protein. This invention also encompasses antisense derivatives. For example, the derivative is one wherein a different substance is attached to the 3′- or the 5′-end of the antisense nucleotide, or one wherein at least part of the bases, sugars, or phosphates is modified by substitution, deletion or addition. Especially, when considering administration to the living body, preferred is a polynucleotide derivative of the phosphothioate type (a phosphate group is covalently bonded by sulfur atom) so that decomposition by nuclease can be prevented. It is preferred that the antisense polynucleotide or a derivative thereof have a base number of from 10 to 2,000. Within this range, oligonucleotides having a relatively small base number can be synthesized chemically using a DNA synthesizer. Further, it is sometimes possible that part of cDNA of the gene according to this invention is used as a template to attain the synthesis by PCR.
(Utility as Therapeutic Agents)
Because the proteins according to this invention inhibit the proliferation of immortal cells including cancer cells, they can be used as therapeutic agents in the treatment of diseases (e.g., cancer) caused by the immortalization of the cells. Therefore, the genes according to this invention encoding these proteins are also usable as therapeutic agents. In addition, the antisense polynucleotides of this invention or derivatives thereof act on the genes according to this invention in an antagonistic manner and stimulate the cell proliferation; therefore, they are applicable to the treatment of various disorders.
When the protein according to this invention is to be used as a cell proliferation inhibitory agent or a cancer therapeutic agent in the treatment of diseases such as cancer, the protein is preferably administered to a patient as a tablet, capsule, injectable suspension, or other formulation together with a pharmaceutically acceptable carrier, diluent, excipient, stabilizer, or the like. The auxiliary agents used for this purpose are well known to one skilled in the art. When the desired route of administration is set such as intravenous administration or oral administration, the cell proliferation inhibitory agents and the cancer therapeutic agents of this invention can be expected to accomplish desired therapeutic effects.
(Application in Gene Therapy)
When the gene according to this invention is used as the cell proliferation inhibitory agent or as the cancer therapeutic agent in the treatment of diseases such as cancer, preferably said gene as the therapeutic gene is combined with the carrier designed for the therapy to prepare a composition for gene therapy, which is administered to a patient.
The composition for gene therapy of this invention can be used in the gene therapy through autologous implantation (ex vivo gene therapy) where the target cells are first removed outside the body from a patient and the cells are then returned to the body of the patient after the gene according to this invention has been transferred into the cells. The gene according to this invention can also be used in the gene therapy where the therapeutic gene is directly administered to the patient (in vivo gene therapy).
When the gene according to this invention is used in the gene therapy, an Adenovirus vector is preferably used. The characteristics of the Adenovirus vector include the following: (1) it can transfer genes into many kinds of cells; (2) it can efficiently transfer genes into even cells at their growth arrest phase; (3) concentration through centrifugation can be done to produce virus with high titer (10 to 11 PFU/ml or more); and (4) it is suitable for direct gene transfer into tissue cells in vivo.
With regard to Adenovirus for gene therapy, there have been developed the first generation Adenovirus vector where the E1/E3 region is deleted (Miyake S., et al., Proc. Natl. Acad. Sci. USA., 93, 1320, 1996), the second generation Adenovirus vector where the E2 or the E4 region in addition to the E1/E3 region is deleted (Lieber, A., et al., J. Virol., 70, 8944, 1966; Mizuguchi, H. & Kay, M. A., Hum. Gene Ther., 10, 2013, 1999), the third generation Adenovirus vector where the Adenovirus genome is almost completely deleted (GUTLESS) (Steinwaerder, D. S., et al., J. Virol., 73, 9303, 1999). Any Adenovirus vector is usable without particular limitations when the gene according to this invention is subjected to gene transfer.
Furthermore, application in the long term gene expression is possible by utilizing an Adeno-AA hybrid vector where AAV's chromosome is provided with the incorporation capability (Recchia, A., et al., Proc. Natl. Acad. Sci., USA., 96, 2615, 1999), or an Adenovirus vector which has acquired the chromosomal incorporation capability through the use of the gene of transposon.
It is also possible to provide an Adenovirus vector with tissue specificity by inserting into the H1 loop of the Adenovirus fiber, a peptide sequence displaying tissue-specific migration (Mizuguchi, H. & Hayakawa, T., N. Nippon Rinsho, 7, 1544, 2000).
Methods for administering the composition for gene therapy of this invention to the living body are not particularly limited. They may preferably be carried out by, for example, parental administration such as intravenous administration.
(Objective Disorders)
The protein according to this invention encoded by the gene according to the invention induces the aged state or the quiescent state of a recipient cell; therefore, it can mediate the differentiation of a cancer cell into a non-cancerous cell. For example, it can be used in the treatment to inhibit the rapid proliferation of cancer cells or original cancer cells.
Generally, there are benign tumor and malignant tumor in “tumor,” the latter of which is collectively referred to as “cancer.”
The tumors that can be treated by the proteins according to this invention are not particularly limited; and they can be used to treat both of the benign tumors and the malignant tumors, and are especially effective for the malignant tumors.
When malignant tumors are classified according to the organs from which they have developed, the classification is as follows: brain and nerve tumor, skin cancer, gastric cancer, lung cancer, hepatoma, lymphoma, leukemia, colon cancer, pancreatic cancer, anal and rectal cancer, esophageal cancer, uterus cancer, breast cancer, osteoma/osteosarcoma, leiomyoma, rhabdomyoma, and other cancers. As stated above, the tumors that can be treated are not particularly limited and any of the aforementioned tumors and cancers can be treated; treatment is effective against lung cancer, hepatoma, esophageal cancer, and osteoma/osteosarcoma.
When the cancers of the respective organs are further classified histologically, they are largely classified into carcinomas derived from epithelial cells, sarcomas derived from non-epithelial cells and the mixed tumors of the two. The tumors that can be treated by the proteins according to this invention are not particularly limited; and they can be used to treat any of the carcinomas derived from epithelial cells, the sarcomas derived from non-epithelial cells and the mixed tumors, and are especially effective for the carcinomas derived from epithelial cells.
In addition, many non-cancerous diseases can be treated by the proteins and the genes according to this invention, and their representatives include disorders caused by the hyperplasia of cells such as glaucoma and psoriasis.
Retrovirus proliferates only in the cells at their growth phase; therefore, the genes according to this invention are expected to be therapeutically effective against diseases such as retrovirus infections (e.g., HIV), warts (including venereal wart), papilloma (?), and progressive multifocalleucocephalopathy. This is because the genes suppress the proliferation of the virus by inhibiting the proliferation of the infected cells. Consequently, they find utility as antiviral agents in suppressing the proliferation of viruses such as influenza virus, hepatitis virus (e.g., hepatitis A and hepatitis B), EBV (Epstein-Barr virus), and papilloma virus.
Since the antisense polynucleotides or their derivatives of this invention posses the activity of stimulating cell proliferation, they can be used in the treatment of disorders requiring the cell proliferation. For example, there are mentioned the proliferation of dermal tissue cells for the purpose of treating wounds, burns and the like, the proliferation of angioendothelial cells for the purpose of treating myocardial infarction, cerebral infarction and the like, the proliferation of atrophic tissue cells for the purpose of treating cirrhosis, renal insufficiency and the like, the proliferation of marrow cells for the purpose of treating the decreased lymphocytes resulting from radiation exposure, AIDS and the like.
(Utility as Therapeutic Agents)
As stated above, the genes according to this invention can be diagnostic markers broadly for diseases caused by the proliferation of immortal cells because their expression is reduced in the immortal cells, including cancer cells. Particularly, the genes according to this invention are usable as cancer diagnostic agents. Further, the proteins according to this invention expressed by the genes according to the invention also experience their reduced expression in the immortal cells, including cancer cells; therefore, they can be used as the diagnostic markers inclusive of the cancer diagnostic agents similarly.
When the protein according to this invention is used in the diagnosis of cancer among others, antibodies specific for the protein are prepared and used in assays. Here, the protein or a part thereof may be used that is produced in a large quantity according to the aforementioned gene manipulation techniques. The obtained antibodies may be either polyclonal antibodies or monoclonal antibodies. These antibodies may be utilized in the purification, the measurement, and the identification of the protein. In particular, the monoclonal antibodies can preferably be used in immunoassays for evaluating the presence of the protein in cells, tissues, or body fluids. Thus, the capabilities provided by the antibodies to detect and/or measure the proteins are very desirable as evaluation means for the presence of tumors or the degree of their severity.
(Gene Diagnosis)
When the gene according to this invention is used in the gene diagnosis for cancer among others, a polynucleotide is prepared and used in an assay: the polynucleotide is based on the DNA sequence constituting the gene which polynucleotide contains DNA hybridizable to said DNA sequence or RNA hybridizable to the RNA sequence corresponding to said DNA sequence. For this purpose, the full-length or part of the antisense polynucleotide described above may be used. The length of such a polynucleotide is preferably from 10 to 2,000 bases, and more preferably from 15 to 1,000 bases. This polynucleotide may be adequately labeled with a radioisotope such as ³²P, an enzyme such as alkaline phosphatase, a fluorescent compound such as fluorescein, or a chemiluminiscent compound such as acrynidium ester. The resulting labeled polynucleotides can be used as DNA and/or RNA probes in assays, including conventional analyses such as Southern or Northern blotting. Preferably, these probes can be hybridized to the aforementioned genes under stringent conditions. The short polynucleotides with 10 to 50 bases may also be used as primers in the diagnosis by PCR.

EXAMPLES

This invention will be described more concretely by way of examples; however, the invention is not to be limited by these examples.

Example 1

Cloning Immortalization-Related Genes

1. Culturing the First Generation Fibroblast Line
Human fibroblasts were prepared from a female embryo of 9 weeks old to form the first generation fibroblast line (KMS-6) (Namba, M. et al., Int. J. Cancer, 35: 275-280, 1985). The cells were cultured with an Eagle minimum medium (MEM available from GIBCO) containing 10% fetal bovine serum (FBS available from Sanko Pure Chemicals Co. Ltd.) or with a Dalbeco modified Eagle medium (DMEM available from GIBCO) under the conditions of 5% CO₂concentration and 37° C. After the cells were grown until almost confluent state in a plate for 5 to 7 days, cells were diluted ¼-fold and subcultured.
2. Establishing an Immortal Cell Line by Treatment with ⁶⁰Co Radiation
KMS-6 cells that had been cultured semiconfluent were radiated with ⁶⁰Co γ-ray having a dose of from 200 to 400 rads 13 times and were subjected to radiation treatment with a total of 2,800 rads. Subsequently, subculturing was repeated at ½-fold per time and about 50 times of subculturing was conducted in total. The immortal cell line (KMST-6) was obtained that displayed no aged morphology and had proliferation capability (Namba et al., loc. cit).
3. Cloning Genes by RDA
Total RNA was extracted from KMS-6 cells that had been aged by subculturing through 45 passages according to the Acid-Guanidium-Phenol-Chloroform (AGPC) method and mRNA was purified with Dyna beads (Dynal Inc.). In like manner, mRNA was extracted and purified from the immortal KMST-6 cells. Each 2 μg of the purified mRNAs was used as a template to prepare the respective cDNAs, by employing avian myeloblastosis virus reverse transcriptase (AMV-RT). cDNA prepared from KMS-6 (0.01 μg) and cDNA prepared from KMST-6 (1 μg) were subjected to subtraction at 68° C. for 8 hours. cDNA that had not been removed through subtraction was used as a template to prepare a double-stranded DNA, by employing T4DNA polymerase. This was incorporated into a pT7Blue (Novagen) plasmid vector and then, it was introduced into E. coli (DH5 α) to produce an E. coli library comprising about 400 clones.

Example 2

REIC Clone

1. Screening the E. coli Library
To remove pseudo-positive clones from the E. coli library, ³²P labeled cDNA probe was prepared based on mRNA of OUMS-24F, a different immortal cell line (Bai, L. et al., Int. J. Cancer, 53: 451-456, 1993); the probe was used to carry out colony hybridization. The hybridization resulted in the removal of clones that had proved positive and the production of about 30 immortal candidate clones.
2. DNA Sequencing
The DNA sequences of the clones obtained by screening were determined according to the Sanger method (Sanger F. et al., Proc. Natl. Acad. Sci. USA 74: 5463-5467, 1977). Consequently, clones were identified that had the aging-related gene sequences, including fibronectin, extracellular matrix proteins (e.g., α2 type I procollagen), collagenase, enzyme proteins (e.g., WS9-14), cell cycle regulating proteins (e.g., p21). Among these, it was found that REIC clone (D93) displaying no homology to known genes and being regarded as a novel gene had been obtained. The DNA sequence is shown in SEQ ID NO:5 in the Sequence Listing.

Example 3

REIC Clone (10-1)

The DNA sequence of REIC clone (D93) predicted that the clone was not of the complete length cDNA. The polynucleotide having the DNA sequence set forth in SEQ ID NO:5 was used as a probe to screen a human heart cDNA library (BRL Inc.) for clones having cDNA fragments with longer DNA sequences. Consequently, there was obtained an REIC clone (10-1) that was predicted to carry the full-length cDNA containing the 5′-region of REIC (D93). DNA sequencing was conducted on this cDNA clone and the entire DNA sequence was determined. The DNA sequence of this clone is shown in SEQ ID NO:3 in the Sequence Listing.

Example 4

REIC Clone (10-2)

Human heart cDNA library (Nippon Gene Co. Ltd.) prepared according to the oligo capping method (Maruyama, K. and Sugano, S., Gene, 138: 171-174, 1994) was employed. Similarly to Example 2, the polynucleotide having the DNA sequence set forth in SEQ ID NO:5 was used as a probe to screen the library for clones having cDNA fragments with longer DNA sequences. Consequently, there was obtained a REIC (10-2) clone that was predicted to carry the full-length cDNA containing the 5′-region of REIC (D93). DNA sequencing was conducted on this cDNA clone and the entire DNA sequence was determined. The DNA sequence of this clone is shown in SEQ ID NO:4 in the Sequence Listing.

Example 5

Analysis of Cloned cDNA

The results from Examples 3 and 5 confirmed that the gene according to this invention completely contained the DNA sequence set forth in SEQ ID NO:5 (which corresponds to base nos. 1848 to 2113 in SEQ ID NO:3 and to base nos. 1820 to 2095 in SEQ ID NO:4, respectively) in addition to the translation region of 1050 bp (which corresponds to base nos. 226 to 1275 in SEQ ID NO:3 and to base nos. 198 to 1247 in SEQ ID NO:4, respectively) set forth in SEQ ID NO:2 encoding the protein having 350 amino acids (SEQ ID NO:1) at the 5′-end side of the foregoing DNA sequence. As previously mentioned, this gene is represented as “Reduced Expression in Immortal Cell (REIC)) and will be referred to as “REIC gene” or simply “REIC,” because its expression is reduced in the immortal cells.
A search for any homologs to the REIC gene according to this invention was carried out in the database disclosed on the Web site by NCBI (National Center for Biotechnology) using a homology analysis program (BLAST).
The result of BLAST produced hDkk3 and RIG7-1 that were identical or homologous to the amino acid sequence set forth in SEQ ID NO:1. hDkk3 displayed 100% identity, while RIG7-1 was partially identical and displayed only 43% homology as a whole. A homology comparison between the amino acid sequences for hDkk3 and RIG7-1 and the amino acid sequence of REIC gene (SEQ ID NO:1) is shown in FIG. 1.

Example 6

Analysis of the Expressed Amounts of REIC in Various Cell Lines

Total RNAs were prepared from 11 kinds of cancer cell lines, Hep3B (hepatocellular carcinoma), HuH6 (congenital hepatoma), HuH7 (hepatocellular carcinoma), HuCCT1 (cholangioma), A549 (lung cancer), HaCat (immortal keratinocyte), HeLa (carcinoma of uterine cervix), Saos2 (osteosarcoma), T24 (bladder cancer), and U937 (histiocytic lymphoma), three kinds of normal fibroblasts, OUMS24, KMS-6, and HSF412, and their corresponding immortal cell lines, OUMS24F, KMST-6, and SUSM1, respectively. The total RNA (10 μg) was electrophoresed on 1% formaldehyde/agarose gel and fixed on a nitrocellulose film (Hybribond N⁺ available from Amersham Pharmacia Biotech Inc.). Next, a probe labeled with (α-³²P)-dCTP was used to carry out Northern hybridization of the REIC cDNA fragment (at 42° C. for 12 hours). The membrane was placed in a buffer containing 5×SSC, 50% formamide, 1× Denhart solution, 0.2% SDS, 19% dextran sulfate, and thermally denatured salmon sperm DNA (200 μg/ml); and to this was added probe DNA labeled with a radioisotope and hybridized at 65° C. Subsequently, the filter was washed in 2×SSC/0.5% SDS buffer at 55° C. and in 0.1×SSC/0.5% SDS buffer at 55° C. once more. The result obtained from autoradiography on an X-ray film is shown in FIG. 2. mRNA the size of which was about 2.6 kb was detected in the normal cell lines. It was shown that the size of this transcript was consistent with the size of the DNA sequence for REIC cDNA as set forth in SEQ ID NO:3 or SEQ ID NO:4. Although the expression of the REIC gene was noted in each of the immortal cell lines, its expression amount was reduced as compared to the normal cell lines. Further, the disappearance of expression of the REIC gene was confirmed in each of the cancer cell lines, except for T24 cell line.

Example 7

Cell Proliferation Inhibition Test

1. Preparation of an Expression Plasmid
Plasmid vector pTracer A (Invitrogen) carrying EF-1α was employed as a gene expression promoter. A 2.6 kb-REIC cDNA fragment that had been cut out with EcoRI-XbaI and contained the DNA sequence set forth in SEQ ID NO:3 was subcloned into the EcoRI-XbaI site in the downstream of the EF-1α promoter to produce an REIC/pTracer expression plasmid (FIG. 3).
2. Incorporation of ³H Thymidine (Immortal KMST-6 Cells)
Immortal KMST-6 cells were inoculated on a 24-well plate at 2×10⁴cell/well. Lipofectamin (GIBCO Inc.) was used as a transfection reagent to carry out the lipofection of 5 μg of REIC/pTracer expression plasmid. Methyl-3H thymidine (1 Ci/mmol) was prepared at a level of 1 μCi/well and cell incorporation was conducted. The obtained cells were washed with chilled PBS(−) after 12 hours. Further, the cells were fixed in 5% trichloroacetic acid and washed with 95% ethanol. After the thus obtained cells were dissolved in 0.3 M NaOH, the cells were neutralized with HCl and the radioactivity of the incorporated ³H thymidine was measured with a liquid scintillation counter. Consequently, the REIC gene was confirmed to posses cell proliferation inhibition effect (FIG. 4). As a control, only the pTracerA vector was subjected to lipofection into the KMST-6 cells.
3. Incorporation of ³H Thymidine (Saos2 Osteosarcoma Cells)
Saos2 osteosarcoma cells were inoculated on a 24-well plate at 5×10⁴cell/well. The calcium phosphate method was used to carry out the transfection of 2 μg of the REIC/pTracer expression plasmid. Methyl-3H thymidine (1 Ci/mmol) was prepared at a level of 1′ Ci/well and cell incorporation was conducted. The cells were washed with chilled PBS(−) after 12 hours. Further, the cells were fixed in 5% trichloroacetic acid and washed with 95% ethanol. After the thus obtained cells were dissolved in 0.3 M NaOH, the cells were neutralized with HCl and the radioactivity of the incorporated ³H thymidine was measured with a liquid scintillation counter. Consequently, the REIC gene was confirmed to posses cell proliferation inhibition effect (FIG. 5). As a control, only the pTracerA vector was subjected to lipofection into the Saos2 cells.

Example 8

Preparation of Antibodies Recognizing REIC Protein

1. In Vitro Translation of REIC Protein
The REIC protein was translated in an in vitro expression system to have it expressed as a GST fusion protein.
Based on the DNA sequence set forth in SEQ ID NO:3, primers, 5′-TGGATCCATGCAGCGGCTTGGGGCCAC-3′ (SEQ ID NO:6) and 5′-TGAATTCAATCTCTTCCCCTCCCAGCAG-3′ (SEQ ID NO:7) were used to selectively amplify the ORF region of REIC. The amplified DNA fragment was digested with BamHI and EcoRI and subcloned into the BamHI-EcoRI site of pGEX-2T, a GST fusion protein expression plasmid (Amersham Pharmacia Biotech) so that REIC could be expressed as a fusion protein, producing a REIC/pGEX-2T expression plasmid (FIG. 6).
E. coli transformed with the REIC/pGEX-2T plasmid was subjected to IPTG induction treatment according to a conventional method, whereby the fusion protein was produced. The harvested E. coli cells were suspended in PBS and subjected to ultrasonic treatment. Then, the supernatant obtained from centrifugation was charged onto a glutathione Cephalose 4B column (Amercham-Pharmacia Biotech Inc.) and the fusion protein was purified. The fusion protein adsorbed on the column was digested with thrombin and eluted. Subsequently, the fusion protein that had not been digested was removed through a glutathione column again and the REIC protein having a few extra amino acids was obtained.
2. Antibodies
The protein that had been obtained in Example 1 above and purified was diluted with physiological saline solution and 1 mg was administered a rabbit in an otic vein thereof every two weeks to immunize the animal. After twice immunization, the antibody titer was measured using an ECL Western blotting (Amersham Pharmacia Biotech Inc.). Consequently, it was confirmed that the antibodies diluted 2000-fold were reactive to 0.01 μg of the protein. Thus boostering was conducted twice. The blood obtained by whole blood collection was incubated at 37° C. for 30 minutes. After the coagulated blood clot was removed, the blood filtered in a sterilized condition using a filter with a pore size of 45 μm to produce the desired antiserum.

Example 9

Antibody Staining of Cell Nuclei

To examine the intracellular localization of the REIC gene, cells were subjected to double staining by using the anti-REIC antiserum prepared in Example 8 and Hoechst33258 (Molecular Probe Inc.) as the control which was a dye capable of fluorescently staining chromosomes specifically. KMS-6 cells were first cultured in a 6-well Petri dish. Hoechst33258 was added to a medium to give a level of 100 ng/ml and culturing was done for 1 hour. The cells stained with Hoechst33258 were fixed in 1% paraformaldehyde and after treatment with the antiserum described above, the cells were stained with a FITC-labeled goat-anti-rabbit antibody (Sigma Inc.). While Hoechst33258 was excited at 360 nm wavelength, the FITC-labeled antibody was excited at 488 nm wavelength. The results of measurement according this immunofluorescence technique are shown in FIG. 7. This confirmed that the antiserum specifically stained the nuclei and the REIC protein was localized in the nucleus within the cell.

Example 10

Chromosomal Mapping of REIC Gene

The chromosomal map of the REIC gene was determined by using a panel derived from human-hamster hybrid cells (Standford G3 Human/Hamster RH Panel available from Research Genetics Inc.) and analyzing radiation-hybrid map (RH map). 5′-GATTTAGATCTGGACCAGGC-3′ (SEQ ID NO:8) (base nos. 1244 to 1263 in SEQ ID NO:4) and 5′-CTGAGCAACACTGCTGGATG-3′ (SEQ ID NO:9) (antisense strand corresponding to base nos. 1777 to 1796 in SEQ ID NO:4) were used as PCR primers. After preheating at 94° C. for 3 minutes, 30-cycle reaction was carried out at 94° C. for 30 seconds, at 63° C. for 30 seconds, and at 72° C. for 1 minute in PCR. After subjecting the reaction solution to electrophoresis on 2% agarose gel, staining with ethidium bromide (EtBr) resulted in the confirmation of a 553 bp amplified product (FIG. 8). The result of PCR identified from the RH database at Stanford University that the REIC gene was located at human chromosome 11 short arm 15 (11p15).
When the base sequence of the REIC gene was compared with the STS genome marker from Gene Bank based on that information, the 3′-non-translation region of the REIC gene was confirmed to match a D11S2388 marker (genome marker for 11p15) (FIGS. 10 and 11). These results revealed that the REIC gene was located in 11p15. As shown in FIG. 9, the LOH frequencies in various cancer tissues have been quoted from the following references: for breast cancer (B) Winqvist, R. et. al., Cancer Res., 53, 4486, 1993; for esophageal cancer (E) Dolan, K., et al., Br. J. Cancer, 78, 950, 1988; for gastric cancer (G) Baffa, R., et al., Cancer Res., 56, 268, 1996; for hepatocellular carcinoma (H) Sheu, J-C., et al., Br. J. cancer, 80, 468, 1999; for head and neck cancer E1-Naggar, A. K., et al., Clin. Cancer res., 2, 903, 1996; for prostate cancer (P) Dahiya, R., et al., Int. J. Cancer, 72, 283, 1997.

Example 11

Expression of REIC Gene in Clinical Samples

1. Availability of Clinical Samples
Various cancerous and non-cancerous tissues were made available from 34 patients who had been operated at the School of Medicine, Okayama University under informed consent.
2. Expression of the REIC Gene
Total RNA was recovered from the cancerous and non-cancerous tissues made available in 1 above by the guanidine-thiocyanate method. The total RNA (10 μg) was electrophoresed on 1% formaldehyde/agarose gel and fixed on a nitrocellulose film (Hybribond N⁺ available from Amersham Pharmacia Biotech Inc.). Next, a probe labeled with (α-³²P)-dCTP was used to carry out Northern hybridization of the REIC cDNA fragment (at 42° C. for 12 hours). The membrane was placed in a buffer containing 5×SSC, 50% formamide, 1× Denhart solution, 0.2% SDS, 20 mM sodium phosphate, and thermally denatured salmon sperm DNA (100 μg/ml); and to this was added probe DNA labeled with a radioisotope and hybridized at 65° C. Subsequently, the filter was washed in 2×SSC/0.5% SDS buffer at 55° C. and in 0.1×SSC/0.5% SDS buffer at 55° C. once again. Autoradiography was carried out on an X-ray film. Consequently, the expressed amount of the REIC gene was reduced in the following cases: ten out of eleven cases with non-small-cell lung cancer patients (FIG. 11A, cases 1-6 and 8-11); four out of thirteen cases with hepatocellular carcinoma patients (FIG. 11B, cases 8, 9, 11, and 13); one out of two cases with esophageal cancer patients (FIG. 11C, case 2); and one out of four cases with gastric cancer patients (FIG. 11D, case 4). On the other hand, reduction in the expressed amount of the REIC gene was not noted in three cases of the colon cancer patients (FIG. 1E).

Example 12

RFLP Analysis of REIC Gene

Restriction fragment length polymorphism analysis (RFLP) was performed to carry out variation analysis of the REIC gene. Chromosomal DNAs were recovered from hepatocellular carcinoma-derived cell lines, JHH-1, HuH-6, HepG2, HLE, HuH-7, PLC/PRC/5, Hep3B, JHH-7, JHH-2, JHH-6, JHH-4, and JHH-5 according to the method described below. Chromosomal DNA was recovered from normal fibroblasts KMS-6 as a positive control.
1. Recovery of Chromosomal DNA
The respective cells that had been grown in a confluent manner were recovered from two culturing plates by trypsin treatment. The recovered cells were suspended in 1×TEN buffer [TEN: 50 mM Tris-HCl (pH 8.0), 1 mM EDTA, 100 mM NaCl] and homogenized. To the homogenized suspension were added 750 μl of SDS (10%) and proteinase K (20 mg/ml available from Merck AG) providing 500 μg/μl. Gentle inverted mixing was done and after incubation at 55° C. for 1 hour, the incubation continued at 37° C. overnight. Phenol/chloroform extraction was carried out twice and the recovered supernatant was further subjected to phenol/chloroform extraction twice, whereby a supernatant was recovered. To the recovered supernatant was added 10.2 ml of ethanol preserved at −20° C. and mixed. The resulting filamentous DNA was removed with a Pasteur pipette and excess ethanol was removed and dried. To the dried DNA was added TE buffer [10 mM Tris-HCl (pH 8.0), 1 mM EDTA] and mixed at room temperature for 1 to 2 days to dissolve DNA.
2. RFLP Analysis
DNA recovered in 1 was digested with restriction enzyme PstI and was electrophoresed on 1% agarose gel; and it was fixed onto a nitrocellulose film (Hybribond N⁺ available from Amersham Pharmacia Biotech Inc.). Next, a probe (the full-length of the REIC cDNA fragment as described in SEQ ID NO:3) labeled with (α-³²P)-dCTP was used to carry out Southern hybridization (at 42° C. for 12 hours). The membrane was placed in a buffer containing 5×SSC, 50% formamide, 1× Denhart solution, 0.2% SDS, 20% sodium phosphate, and thermally denatured salmon sperm DNA (100 μg/ml); and to this was added probe DNA labeled with a radioisotope and hybridized at 65° C. Subsequently, the filter was washed in 2×SSC/0.5% SDS buffer at 55° C. and in 0.1×SSC/0.5% SDS buffer at 55° C. once again. Autoradiography was carried out on an X-ray film. Consequently, it was confirmed that allele disappeared in the three cancer cell lines of HepG2, Hep3B, and JHH-4. This suggests the possibility that not only the expression of the REIC gene was reduced, but also the REIC gene itself experienced LOH (FIG. 12).

Example 13

Involvement of REIC Gene in Cell Cycle

To identify changes in the expressed amount of the REIC gene in a cell cycle, the following experiment was conducted. KMS-6 cells were inoculated in a 10-cm Petri dish at 2×10⁶cell/dish. The medium was prepared so as to provide a serum concentration therein of 0.5% during inoculation. Cultivation was carried out for 72 hours and the cell cycle was synchronized to a GO phase (resting state). The serum was next added to provide a level of 10% and the cell cycle was allowed to start by stimulating the cells. Total RNA 0, 0.5, 1, 3, 6, 12, 24, or 48 hours after addition was recovered and total RNA from the normal culturing conditions was recovered, which were analyzed for changes in the expressed amount of the REIC gene using Northern hybridization. Consequently, it was confirmed that the expression of REIC gene was reduced most 12 hours after addition of the serum and then it increased again. The change in the expressed amount of the GAPDH gene was analyzed as the control; and as a result, it was confirmed that a constant amount of expression was throughout regardless of the cell cycle (FIG. 13A). Simultaneously, when ³H thymidine incorporation was determined following Example 7-2, it was confirmed that the ³H thymidine incorporation increased 24 hours after addition of the serum and it decreased again thereafter (FIG. 13B).
From the foregoing results it is thought that the REIC gene is expressed strongly at GO phase in the cell cycle to act toward stopping cell proliferation, whereas it acts toward directing the cell cycle to G1 phase with decreasing its expression.

Example 14

Induction of Expression of REIC Gene by a Cell Proliferation Inhibitor

JHH-1 cells were inoculated in a 10-cm Petri dish at 2×10⁶cell/dish. TGF-β, an epithelial cell proliferation inhibitor, was next added to the culture of JHH-1 cells, providing a level of 2.5 ng/ml. Total RNA prior to the addition of TGF-β, 3, 6, 12, 24, or 48 hours after its addition was recovered and total RNA from the normal culturing conditions was recovered. When the recovered RNAs were analyzed by Northern hybridization, it was confirmed that the expression of REIC gene increased 24 hours after the addition of TGF-β (FIG. 14).
From the foregoing results it is thought that since a cell proliferation inhibitory effect can be expected for a compound capable of inducing the expression of the REIC gene, the expression of the REIC gene will be useful in screening candidate low molecular weight compounds for cancer therapy.

Example 15

Preparation of pAxCaREIC Cosmid Vector

Primers were designed: a primer wherein a BamHI site was designed before the start codon of REIC (REICS: 5′-GGATCCAGAGCGGAAATGCAGCGG-3′ (SEQ ID NO:10) sequence obtained by linking a BamHI site of GGATCC to the 5′-end of a sequence corresponding to base nos. 190 to 206 in SEQ ID NO:4) and a primer (REICA: 5′-GAATTCTAAATCTCTTCCCCTCCCAG-3′ (SEQ ID NO:11) sequence obtained by linking an EcoRI site of GAATTC to the 5′-end of the antisense strand of a sequence corresponding to base nos. 1230 to 1249 in SEQ ID NO:4). pTracer/REIC was next used as a template to amplify the coding region of REIC through PCR. The PCR conditions were such that 30 cycles were conducted at 94° C. for 30 seconds, 63° C. for 30 seconds and 72° C. for 1 minute. After an about 1.1 kb amplified product was recovered from the gel and digested with EcoRI and BamHI, it was subcloned into pUC119. This was introduced into E. coli. DH5α. The base sequence of a plasmid extracted from ampicilin-resistant clones was analyzed, and it was confirmed that there was no variation introduced in the insert sequence (pUC119/REIC in FIG. 15). PUC119/REIC was digested with EcoRI and BamI to recover an about 1.1 kb REIC fragment. The recovered REIC fragment was made blunt at their ends using a DNA Blunting Kit (Takara Shuzo Co. Ltd.), and was subcloned into the SWaI site of a cosmid containing a CAG promoter (pAxCAwt in FIG. 16). The resulting cosmid (pAxCAREIC in FIG. 17) was digested with ClaI to determine the presence or absence of insert. Furthermore, the cosmid was digested with StuI and SpeI, confirming that the direction of the insert was 5′-promoter-insert-polyA signal.

Example 16

Preparation of Recombinant Adenovirus Vector for Expression of REIC

A recombinant Adenovirus vector for the expression of REIC was prepared according to the COS-TPC method (Miyake, S., et al., Proc. Natl. Acad. Sci. USA., 93, 1320, 1966).
pAxCAREIC prepared in Example 15 (8 μg) and COS-TPC treated with EcoT22I (5 μg) were subjected to transfection into 293 cells by the calcium phosphate method (FIG. 18). After culturing at 37° C. for 12 hours under 5% CO₂conditions, the cells were inoculated on a 96-well plate and were further cultured for 10 to 15 days. The culture was recovered together with dead cells from the well where the cells were dead. After six times of freeze-thaw, the supernatant centrifuged at 5,000 rpm for 5 minutes was stored as a primary virus solution at −80° C. 293 cells and HeLa cells were infected with the primary virus solution. Three days later, HeLa cells showed no cell degeneration and culture was recovered together with dead cells from the clone where 293 cells were dead completely. After six times of freeze-thaw, the supernatant was stored as a secondary virus solution at −80° C. Following the method described in Example 12-1, chromosomal DNA was prepared from the cells obtained when the secondary virus solution was prepared. After digestion with XhoI and ClaI, this DNA was subjected to agarose electrophoresis and the presence or absence of the REIC gene was determined.
293 cells were infected with the secondary virus solution of the clone selected by these manipulations. When the cells were dead, culture was recovered together with the dead cells. After six times of freeze-thaw, the supernatant centrifuged at 3,000 rpm for 10 minutes was stored as a tertiary virus solution at −80° C. Scale up was conducted through similar manipulations to finally prepare a quaternary virus solution, which was stored at −80° C. (Adeno-REIC).

Example 17

Determination of the Presence or Absence of Contamination by Wild-Type Adenovirus

HeLa cells were infected with the quaternary virus solution produced in Example 16. Three days later chromosomal DNA was prepared according to the method described in Example 12-1. The prepared DNA was used as a template to carry out 25-cycle PCR reaction by employing a primer set designed to amplify from the start codon to the 3′-end of the first exon of the E1A gene (5′-ATGAGACATATTATCTGCCACGGAGGTGTTATTAC-3′ (SEQ ID NO: 12), 5′-CCTCTTCATCCTCGTCGTCACTGGGTGGAAAGCCA-3′ (SEQ ID NO:13). After PCR, electrophoresis on agarose gel was conducted to determine the presence or absence of an E1A gene fragment (214 bp).

Example 18

Determination of Gene Transfer Efficiency of Adeno-REIC

The titer of Adeno-REIC was measured according to TCID₅₀method (50% tissue culture infectious dose). Adeno-REIC prepared in Example 16 was diluted serially 10-fold to prepare a 10⁴-fold virus dilution. The 10⁴-fold virus dilution was transferred to the first column of a 96-well plate. Then 3ⁿdilution was carried out up till the eleventh column and finally, from 10⁴- to 3¹¹-virus dilutions were prepared. The 12th column was made the control for non-infected cells. After 293 cells were inoculated at 3×10⁴cells/well, cultivation was carried out at 37° C. for 11 to 13 days under 5% CO₂conditions to determine the presence or absence of cell degeneration. TCID₅₀was calculated statistically according to the Karber equation, and consequently, the titer of Adeno-REIC was determined to be 6.6×10⁹pfu/ml.

INDUSTRIAL APPLICABILITY

As described above, the genes according to this invention and the proteins encoded by the genes according to this invention both experience their reduced expression or their disappearance in immortal cells including cancer cells; therefore, they will prove to be effective markers for the diagnosis of diseases caused by the proliferation of those cells and thus can be used as diagnostic agents such as cancer diagnostics.
Also, the proteins according to this invention posses cell proliferation inhibitory activity; therefore, they are useful for the treatment of diseases caused by the aberrant proliferation of cells such as cancer.
Further, the genes according to this invention express the aforementioned proteins possessing the cell proliferation inhibitory activity in a cell; therefore, they can be applied to the gene therapy, whereby they can be used in the treatment of diseases caused by the aberrant proliferation of cells.
In addition, the antisense polynucleotides of this invention stimulate the cell proliferation; therefore, they can be used in the treatment of diseases requiring the cell proliferation.

Claims

1. (canceled)

2. (canceled)

3. (canceled)

4. (canceled)

5. (canceled)

6. (canceled)

7. (canceled)

8. (canceled)

9. (canceled)

10. (canceled)

11. (canceled)

12. (canceled)

13. (canceled)

14. (canceled)

15. (canceled)

16. (canceled)

17. (canceled)

18. (canceled)

19. (canceled)

20. A method of inhibiting cell proliferation, which comprises introducing a polynucleotide comprising at least one of the DNA sequences set forth in SEQ ID NO:2, SEQ ID NO:3, SEQ ID NO:4, or the DNA sequence encoding the amino acid sequence set forth in SEQ ID NO:1 in the Sequence Listing into cells.

21. The method according to claim 20, wherein said polynucleotide consists essentially of the DNA sequence set forth in SEQ ID NO:2.

22. A method of treating cancer, which comprises administering a polynucleotide comprising at least one of the DNA sequences set forth in SEQ ID NO:2, SEQ ID NO:3, SEQ ID NO:4, or the DNA sequence encoding the amino acid sequence set forth in SEQ ID NO:1 in the Sequence Listing in a patient in need of treatment.

23. The method according to claim 22, wherein said polynucleotide consists essentially of the DNA sequence set forth in SEQ ID NO:2 in the Sequence Listing.

24. The method according to claim 23, wherein the DNA is contained in a viral vector.

25. The method according to claim 24, wherein the viral vector is an Adenovirus vector.

26. The method according to claim 22, wherein the cancer is lung cancer, hepatocellular carcinoma, esophageal cancer or gastric cancer.

27. A method of inhibiting cell proliferation, which comprises introducing a polynucleotide encoding REIC protein.

28. A method of treating cancer which comprises administering to a patient in need of treatment a polynucleotide encoding REIC protein.

29. A novel invention selected from the group consisting of:

(a) a protein comprising an amino acid sequence derivable from the substitution or the deletion of one or more amino acids in the amino acid sequence set forth in SEQ ID NO:1 in the Sequence Listing, or from the addition of one or more amino acids to the amino acid sequence set forth in SEQ ID NO:1 in the Sequence Listing, said protein possessing cell proliferation inhibitory activity;

(b) a polynucleotide comprising a DNA sequence derivable from the substitution or the deletion of one or more DNA in a DNA sequence selected from the group consisting of the DNA sequence set forth in SEQ ID No:2 in the Sequence Listing, the DNA sequence set forth in the SEQ ID NO:3 in the Sequence Listing and the DNA sequence set forth in SEQ ID NO:4 in the Sequence Listing, or from the addition of one or more DNA to a DNA sequence selected from the group consisting of the DNA sequence set forth in SEQ ID NO:2 in the Sequence Listing, the DNA sequence set forth in SEQ ID NO:3 in the Sequence Listing and the DNA sequence set forth in SEQ ID NO:4 in the Sequence Listing, said polynucleotide possessing cell proliferation inhibitory activity;

(c) RNA encoded by a DNA sequence selected from the group consisting of the DNA sequence set forth in SEQ ID NO:2 in the Sequence Listing, the DNA sequence set forth in SEQ ID NO:3 in the Sequence Listing sand the DNA sequence set forth in SEQ ID NO:4 in the Sequence Listing.

(d) an antisense polynucleotide comprising an antisense DNA to a DNA comprising a DNA sequence selected from the group consisting of the DNA sequence set forth in SEQ ID NO:2 in the Sequence Listing, the DNA sequence set forth in SEQ ID NO:3 in the Sequence Listing and the DNA sequence set forth in SEQ ID NO:4 in the Sequence Listing, or a derivative thereof; and

(e) a composition for gene therapy comprising as a therapeutic gene, a polynucleotide comprising a DNA sequence selected from the group consisting of the DNA sequence set forth in SEQ ID NO:2 in the Sequence Listing, the DNA sequence set forth in SEQ ID NO:3 in the Sequence Listing and the DNA sequence set forth in SEQ ID NO:4 in the Sequence Listing.