US20050183167A1

US20050183167A1 - Microspore-specific promoter and method for producing hybrid plants

Info

Publication number: US20050183167A1
Application number: US11/044,208
Authority: US
Inventors: Jan Drouaud; Agnes Fourgoux; Georges Pelletier; Philippe Guerche
Original assignee: Institut National de la Recherche Agronomique INRA
Current assignee: Institut National de la Recherche Agronomique INRA
Priority date: 1997-09-23
Filing date: 2005-01-28
Publication date: 2005-08-18
Also published as: AU9270798A; DE69828183D1; FR2768745A1; CA2305377A1; EP1017832A1; EP1017832B1; AU755745B2; US6861576B1; FR2768745B1; ATE284968T1; WO1999015678A1

Abstract

The invention concerns a microspore-specific promoter and its use for obtaining plants with gametophytic male sterility with inducible fertility. It also concerns a method for obtaining hybrid plants.

Description

The present invention concerns in particular a microspore-specific promoter and a method for producing hybrid plants.
The microspore corresponds to a precise stage in the development of the male gamete in higher plants. Male gametogenesis takes place in a specialized organ, the anther, and comprises sensu stricto the differentiation of diploid cells into haploid pollen grains. Each diploid cell, called a sporogenic cell, undergoes meiosis to produce four haploid microspores which subsequently differentiate to give mature pollen grains.
Knowing the molecular factors which control the development of the microspore, and how to manipulate them, is a considerable asset not only from a fundamental research point of view but also from a plant-improvement point of view. This is because this knowledge enables the production of pollen grains, and consequently the reproduction of the plant, to be controlled.
Such control proceeds via the production of plants with one of their gametes totally sterile so as to prevent self-fertilization.
So far, male sterility of plants, which is less complex than female sterility, has been widely studied but necessitates the use of genetic systems which are relatively laborious to implement for commercial production of hybrid seeds. One type of male sterility which is highly used is cytoplasmic male sterility which consists in producing:

- a female line whose sterile-male characteristic is transmitted through the cytoplasm; such a cytoplasm is called a “male-sterility-inducing cytoplasm”; these “inducing cytoplasms” are, for a given species, in general discovered in the wild, or sometimes observed in plants which result from interspecific crosses (cross-fertilization, protoplast fusion, etc.),
- a “sterility-maintaining” line whose cytoplasm is normal, and
- a fertility-restoring line if the seeds and/or the fruit of the hybrid plant are harvested.

In the female line (carrier of the sterility-inducing cytoplasm) all the pollen grains are killed. To multiply and improve this line it is therefore necessary to have a line which carries neither the inducing cytoplasm (which thus produces pollen grains) nor the restoration gene. This line is termed “sterility-maintaining” because crossing with the female line gives an entirely female lineage.
Restoration of the fertility is carried out in the hybrid by crossing the female parent (carrying the sterile male cytoplasm) with the parent comprising a nuclear restoration gene (the restoring line), this cross enabling the production of fertile hybrid plants which will produce seeds by self-fertilization.
In the case of sporophytic nuclear sterility, systems have been described, for example, which make it possible to kill the mother cells of the microspores by means of an RNAse, and, consequently, to obtain plants lacking in the male gametes. The fertility is restored when the line which no longer produces male gametes is crossed with another line carrying an inhibitor of the RNAse, the seeds resulting from this cross comprising both the cytotoxic gene and its inhibitor.
As for the present invention, it proposes to produce plants with gametophytic male sterility, which are incapable of producing pollen grains. It consists in using a promoter region which controls the expression, specifically in the microspores, of a gene encoding a cytotoxic molecule, while also having a means permitting the controlled inhibition of this toxicity, in order to obtain a line of homozygous progenitor plants which are totally sterile as regards their male gametes, and then to obtain fertile hybrid plants (which produce one viable pollen grain in two), thus capable of producing seeds, without having to resort to using a fertility restoration gene.
So far, a single gene which is expressed specifically in the microspore has been described, in tobacco (Oldenholf et al., 1996). This gene does not have any homology with the Brassicaceae as results from a Southern Blot experiment on the genomic DNA of Brassica oleracea (data not shown).
A subject of the present invention is therefore a nucleotide sequence for which it has been demonstrated that the corresponding gene is expressed specifically in the microspore; this nucleotide sequence corresponds to SEQ ID No. 3.
Consequently, a subject of the present invention is a nucleotide sequence corresponding to all or part:

- a) of the sequence according to SEQ ID No. 3, or
- b) of a sequence which hybridizes to the sequence according to a), or
- c) of a sequence which has at least 80% homology with a) or b).

In the context of the present invention, the most valuable part of this nucleotide sequence is the promoter region which is defined as being the sequence preceding (on the 5′ side) the translation start codon (ATG). However, at the current stage of knowledge about the nucleotide sequence according to SEQ ID No. 3, three ATGs have been shown: one at position 1965, another at position 2085 and a third at position 2112. It would appear that the functional ATG is the one situated at position 2085. This is not confirmed however; it is the reason why the largest envisagable promoter region concerning SEQ ID No. 3 stretches from nucleotide 1 to nucleotide 2111, and preferably from nucleotide 1 to nucleotide 2084.
This promoter region thus precedes, in the natural state, a coding (orf) sequence which is expressed specifically in the microspores, and in the case where this orf is replaced (by genetic manipulation) by another orf whose product is a cytotoxic molecule, the latter is capable of destroying only said microspores.
A subject of the invention is therefore also cellular expression vectors, comprising a promoter sequence such as that described above, placed upstream of a DNA sequence encoding a cytotoxic product.
Advantageously, the cytotoxic product in question is a protease. Specifically, when the protease is expressed specifically in the microspores, it destroys all the proteins thereof, as a result of which the microspore cannot survive. Preferably, the protease is a subtilisin, and in particular the BPN′ subtilisin from Bacillus amyloliquefasciens. This BPN′ subtilisin is part of the family of subtilisins which are found in many organisms and which are proteases known to cleave proteins at the level of serines.
It involves, therefore, introducing a vector in accordance with the invention into a bacterial strain capable of carrying out the transformation of plant cells, such as Agrobacterium tumefaciens. This may in particular be carried out by the method of infiltration of Arabidopsis thaliana plants described by Bechtold et al., 1993. This technique consists in introducing the bacterium into the cells of the floral scapes by infiltration under vacuum. The plants are then bedded out under glass and their seeds harvested. About one seed in a thousand gives rise to plants of which all the cells carry the transgene. The transformation of other plants, and in particular of rape, may be carried out through Agrobacterium tumefaciens and/or Agrobacterium rhizogenes with the aid of various techniques, now conventional (transformation of foliar disks, of hypocotyls, of floral scapes etc.) which combine a phase of coculture of the bacterium with the plant tissues, followed by the selection and by the regeneration of the transformed cells into whole plants. Other transformation techniques do not use this bacterium, but make it possible to transfer the cloned gene directly into cells or tissues (electroporation, particle gun etc.), and to select and obtain transformed plants (review by Siemens and Schieder).
A subject of the present invention is also the cells of plants transformed with a vector in accordance with the invention and plants comprising said cells.
A subject of the invention is also plants with gametophytic male sterility with inducible fertility, comprising a gene encoding a male-gamete-specific cytotoxic product.
As indicated above, the present invention thus enables the production of plants with gametophytic male sterility which inhibits any production of pollen grains. However, these plants, which are homozygous as regards their male sterility, may be obtained only after self-fertilization of plants which have previously been transformed with a vector in accordance with the invention, i.e. which are hemizygous as regards their male sterility and in which the fertility of the pollen grains carrying the gametophytic sterility has been provisionally restored, so as to allow them to carry out self-fertilization.
One means of producing plants which are homozygous for this gene would be to use gynogenesis, a technique which consists in regenerating doubled haploid plants from ovule or ovary culture. It involves, in this case, obtaining the formation of a homozygous diploid plant from a female haploid gamete. Gynogenesis is applicable to a certain number of plant species, but production of a large number of plants which are homozygous for the transgene in question is not envisagable by this technique, because it is tricky to use and its efficacy most often remains very poor.
The present invention also concerns a method for producing plants with gametophytic male sterility with inducible fertility, comprising:

- the insertion into plants of line A of a gene whose expression product is cytotoxic for the microspores, and
- the production of plants which do not produce male gametes.

More particularly, the method for producing plants with gametophytic male sterility with inducible fertility in accordance with the invention comprises the steps of:

- a) transformation of plants of a line A with a vector in accordance with the invention,
- b) induction of the fertility of the plants obtained in a) by inhibition of the cytotoxicity of the product,
- c) self-fertilization of the fertile plants obtained in b),
- d) selection of the plants which do not produce male gametes, derived from c),
- e) multiplication of the plants obtained in d) by repeating steps b) and c).

Thus, in step a) of the method above, a line A is transformed with a vector in accordance with the invention, i.e. comprising a microspore-specific promoter sequence placed upstream of a gene encoding a cytotoxic product. The plants resulting from this transformation all comprise the DNA in question whose gene is expressed only in the microspores. However, at this stage, the plant being diploid at the time of the transformation, it becomes heterozygous as regards its male sterility and is therefore capable, after transformation, of giving rise to microspores of which only 50% are viable (the other 50% being destroyed following the expression of the transformant).
In step b), the restoration or the induction of the fertility which has been lost by the transformed plant is then carried out by inhibiting the toxicity of the product of the transforming gene.
This may be done in various ways. However, when the cytotoxic product in question is a subtilisin and in particular the BPN′ subtilisin from Bacillus amyloliquefasciens, the inhibition is achieved by the action on the transformed plant of an insecticide molecule of the fluorophosphate family (having a priori no action on the plants). Indeed, this molecule, applied during anthesis, is capable of restoring the total fertility of the hemizygous plants by inhibition of the subtilisin. It may, for example, be applied to the foot of the plant and reach all the tissues. As an insecticide, it should have no effect on the plant. However, it will have its full effect at the level of the microspores, the only organs which express subtilisin.
Next, in step c), the self-fertilization of the plants whose fertility has been restored is carried out, then, in step d), the plants which are homozygous with respect to male sterility, and consequently totally sterile in the absence of treatment i.e. of inhibition of the cytotoxic product, are selected.
The plants thus obtained, which are incapable of producing male gametes but still capable of producing female gametes, i.e. ovules, may be crossed with another line of plants which are totally fertile and have valuable agronomic properties. In this cross, the plant which is homozygous as regards male sterility plays the role of the female parent whilst the other plant plays the role of the male parent. The hybrid resulting from this cross is hemizygous as regards male sterility, and is therefore capable of producing pollen grains of which 50% are viable (the others, carrying the transgene, are thus destroyed by the cytotoxic product). A 50% production of the pollen is more than enough to give rise to seeds having the qualities of each of the crossed lines which it is specifically desired to combine.
The present invention thus also concerns a method for producing hybrid plants, characterized in that it comprises crossing plants of line A, which have gametophytic male sterility as described above, with plants of line B of agronomic value. It also concerns the seeds derived from the hybrid plants thus obtained.
Advantageously, the plants in accordance with the invention belong to the Brassicacea family; preferably, they are rape.
In addition, it should be pointed out that the promoter region in accordance with the invention may also be used in strategies of gene inactivation by utilization of mobile elements such as transposons and retrotransposons.
Specifically, this may be carried out with the aim of isolating plants which have a stable mutant genotype, and isolating a very large number of different, independent mutants.
It involves creating a chimeric sequence consisting of a promoter region in accordance with the invention and of the sequence, all or in part, of a mobile element. The expression of this mobile element, which is reduced to the phase of development of the microspore, should make it possible to induce some mutations into the genome of the pollen grains of the transformed plant. It is thus possible, in the lineage obtained from these pollen grains, to isolate individuals which no longer carry the transgene, but merely one or more mutations derived from transposition phenomena. The principle is to bring about, using the abovementioned promoter region, activation of the transposition of these-mobile elements for a very short time. (microsporogenesis) in a multitude of gametic cells and to eliminate in the following generation the plants which carry the transgene (i.e. the promoter region+the sequence which allows the activation of the transposition) so that the cycle does not start up again. It then involves investigating, in the lineage, and by various techniques, the plants for which the mobile elements have caused mutations by inserting themselves into genes. The study of these plants would make it possible, in particular, to understand the function of the mutated gene.
Among the mobile elements which can be used in this way, mention may be made of the retrotransposons of the type Tnt1, Tto1, Tnp-2, Tos10-17, Bsl, BARE-1, Ta-1, etc., or the transposons of the type Ac/Ds, Spm, Mu, etc.
FIG. 1 illustrates the alignment of the sequences of the two cDNAs M3 (SEQ ID No. 1) and M3.21 (SEQ ID No. 2) derived from the screenings of the Brassica napus cv.Brutor microspore cDNA library. The start (ATG) and stop (TGA) codons of the putative coding sequence are underlined.
FIG. 2 gives the nucleotide sequence of the clone BnM3.4 (SEQ ID No. 3) from which the M3 cDNA is thought to be derived. The ATG in bold (position 2085) is the one which has the highest probability of being the functional ATG. The ATG underlined in position 2112 is the one present in the M3.21 cDNA sequence. The ATG underlined in position 1965 is the first ATG encountered. The sequence preceding these ATGs is, consequently, taken to be the promoter region of the BnM3.4 gene.
FIG. 3 illustrates the Northern Blot hybridization with the P³²-labeled M3 probe on total RNAs (10 μg per well) extracted from different rape tissues. A: buds of 0-2 mm (meiocytes); B: buds of 2-3 mm (mononucleated microspores); C: buds of 3-4 mm (binucleated microspores); D: buds greater than 4 mm (mature pollen grains); E: rape sepals; F: rape pistils; G: buds of sterile male rape; H: full buds of rape.
FIG. 4 illustrates the preparation of the 7152 bp pJD51 plasmid from the 5135 bp pAF1 plasmid (plasmid of origin: pBluescript SK-PROMEGA) and from the 5458 bp pBnB2 plasmid (plasmid of origin pBS SK-PROMEGA).
FIG. 5 illustrates the preparation of the 19670 bp pJD101 plasmid from the 15400 bp pEC2 plasmid which is derived from the pDHB 321.1 plasmid (D. Bouchez, personal communication) and from the pJD51 plasmid (cf. FIG. 2).
FIG. 6 represents a scheme of selection of hybrid varieties of a plant (rape for example) which calls upon a system of gametophytic male sterility with induction of the fertility. SMGfi: gametophytic male sterility with inducible fertility; Induction F: induction of the fertility; AF: self-fertilization.
The invention is not limited to the sole description above; it will be better understood in the light of the following examples, which are given, however, purely as illustrations.

EXAMPLE 1

Demonstration of a Microspore-Specific Promoter

The first step consisted in producing complementary DNA (cDNA) clones expressed specifically in the microspore of rape. For this, cDNAs were synthesized from rape microspore messenger RNAs (mRNA). In parallel, cDNAs were synthesized from floral bud mRNA from sterile male rape. The cDNAs coming from said floral buds were subtracted from the cDNAs derived from the mRNAs expressed in the microspore of rape. The molecules resulting from this subtraction were used in an experiment of differential hybridization of a microspore cDNA library, according to a technique similar to that presented by Atanassov et al. (1996).
One of these isolated clones, the M3 cDNA (SEQ ID No. 1), proved to be the representative of an mRNA which is specifically expressed in the microspore of rape. Another cDNA, named M3.21 (SEQ ID No. 2) was found by screening the library with the M3 cDNA. The sequences of these two cDNAs show 89% identity (FIG. 1); they are clearly derived from a family of very close genes, which are expressed specifically in the microspore.
The M3 cDNA clone was used as a probe to screen a rape genomic DNA library sold by CLONTECH Laboratories, Inc., 4030 Fabian Way, Palo Alto, Calif. 94303-4607, USA; two clones (BnM3.4 and BnM3.2) corresponding to two different genes were isolated. The M3 cDNA is thought to be derived from the BnM3.4 (SEQ ID No. 3) gene, because this gene carries an orf which is identical to the M3 cDNA (FIG. 2). This gene has no intron. Sufficient experimental results lead to the thought that the M3.21 cDNA is not derived from the second isolated gene (BnM3.2), which indeed carries a region corresponding to the M3.21 cDNA sequence, but to a third gene, which is very close to the BnM3.2 gene.
The promoter region of this gene is defined as being the sequence immediately upstream of the translation start codon (ATG).

EXAMPLE 2

Verification of the Specificity of the Promoter of the BnM3.4 Gene

A/ Northern Blot
A Northern Blot analysis was carried out with 10 μg of total RNA from sepals, pistil, whole buds, buds from sterile male plants, meiocytes, microspores, binucleated pollen grains and trinucleated pollen grains, hybridized with the M3 cDNA. A band of 1 kb corresponds to the transcript of the BnM3.4 gene, and also to the M3.21 transcript, since they are very close sequences. These transcripts are present uniquely in the first two stages of male gametogenesis, whose products are difficult to isolate perfectly experimentally (FIG. 3).
The proteins deduced from these two cDNA clones are evidently very close and are rich in glycine and proline. They are identical to strictly no other protein in the databanks, but are certainly involved in the formation of the wall.
B/ Transformation with a Chimeric Gene
Different chimeric genes (i.e. consisting of the sequence encoding a known gene, preceded by the promoter region in accordance with the invention) were constructed in order to study the spatio-temporal specificity of the BnM3.4 promoter.
FIG. 4 shows the construction of a bacterial vector pJD51, which combines a fragment of the BnM3.4 promoter with the sequence encoding the β-glucuronidase gene. The pAF1 plasmid containing the sequence encoding β-glucuronidase and the transcription termination sequence of the NOS gene from Agrobacterium tumefaciens, was digested with the enzymes BamHI and ClaI. The pBnB2 plasmid contains a 6 kb BamHl-BamHl fragment derived from the BnM3.4 genomic DNA clone, and in which the BnM3.4 gene is present. A fragment corresponding to the largest promoter region possible given the restriction sites (2056 bp) was isolated from the pBnB2 plasmid by a BamHI-NspV digestion, and inserted between the BamHI and ClaI (compatible with NspV) sites of the pAF1 plasmid.
The chimeric gene thus constructed was isolated by a NotI digestion of the pJD51 plasmid, so as to be cloned into a binary plasmid from Agrobacterium tumefaciens: pEC2 opened by the enzyme NotI (FIG. 5).
The pJD101 binary plasmid containing the chimeric gene was introduced into the C58C1 strain (pMP90) of Agrobacterium tumefasciens (Koncz et al. 1986) by electroporation, and the transformants possessing pJD101 were selected on a medium containing kanamycin. One of these Agrobacterium transformants was used to transform Arabidopsis thaliana (Wassilevskja ecotype) by the method of infiltration of the floral scapes described by Bechtold et al., 1993. The transformed plants are selected using their resistance to phosphinothrycin, which is conferred by a resistance gene jointly inserted into the T-DNA.
Among these plants, certain show expression of the β-glucuronidase specifically in the microspores (demonstrated by a blue coloration when a β-glucuronidase-specific substrate, X-Glu, is added). No coloration is present in the adjacent tissues of the anther, nor in the somatic tissues of the plant. In a transformed plant which is hemizygous for the chimeric gene, half the microspores produced are blue, because only they contain the chimeric gene.
The specificity of expression conferred by this 2 kb promoter sequence is indeed restricted, within the limits of the sensitivity of the technique, to a single cell type, and from the microspore stage.

REFERENCES

Atanassov I et al. (1996) Plant Science 118, 185-194
Bechtold N. et al. (1993) Comptes-Rendus de l'Académie des Sciences 316, 1194-1199
Koncz et al. 1986) Molecular General Genetics 204, 383-396
Mariani et al. Nature 347 (1990) 737-741
Oldenholf M. T. et al. (1996) Plant Molecular Biology 31, 213-225
Siemens and Schieder 1996. Plant Tissue Culture and Biotechnology, 2, 66-75

Claims

1-6. (canceled)

7. Plants with gametophytic male sterility with inducible fertility, comprising a gene encoding a male-gamete-specific cytotoxic product.

8. Method for producing plants with gametophytic male sterility with inducible fertility, comprising:

the insertion into plants of a line A of a gene whose-expression product is cytotoxic for the microspores, and

the production of plants which do not produce male gametes.

9. Method for producing plants with gametophytic male sterility with inducible fertility according to claim 8, comprising the steps of:

a) transformation of plants of a line A with a vector according to claim 3 or 4,

b) induction of the fertility of the plants obtained in a) by inhibition of the cytotoxicity of the product,

c) self-fertilization of the fertile plants obtained in b),

d) selection of the plants which do not produce male gametes, derived from c),

e) multiplication of the plants obtained in d) by reproduction of steps b) and c).

10. Method for producing plants according to claim 8 or 9, characterized in that, when the cytotoxic product is a subtilisin, the induction of the fertility consists in applying to the plant an insecticide molecule of the fluorophosphate family.

11. Seeds derived from the hybrid plants obtained by crossing plants of line A, which have gametophytic male sterility with inducible fertility, according to claim 7, or as obtained by using the method according to one of claims 8 to 10, with plants of line B of agronomic value.

12. (canceled)