US20040121314A1 - Methods for rapid detection and identification of bioagents in containers - Google Patents

Methods for rapid detection and identification of bioagents in containers Download PDF

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Publication number
US20040121314A1
US20040121314A1 US10/326,642 US32664202A US2004121314A1 US 20040121314 A1 US20040121314 A1 US 20040121314A1 US 32664202 A US32664202 A US 32664202A US 2004121314 A1 US2004121314 A1 US 2004121314A1
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US
United States
Prior art keywords
nucleic acid
bioagent
base
mass
primer
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Abandoned
Application number
US10/326,642
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English (en)
Inventor
David Ecker
Richard Griffey
Rangarajan Sampath
Steven Hofstadler
John McNeil
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Ibis Biosciences Inc
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Isis Pharmaceuticals Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Isis Pharmaceuticals Inc filed Critical Isis Pharmaceuticals Inc
Priority to US10/326,642 priority Critical patent/US20040121314A1/en
Priority claimed from US10/326,047 external-priority patent/US20030190605A1/en
Assigned to ISIS PHARMACEUTICALS, INC. reassignment ISIS PHARMACEUTICALS, INC. ASSIGNMENT OF ASSIGNORS INTEREST (SEE DOCUMENT FOR DETAILS). Assignors: ECKER, DAVID J., GRIFFEY, RICHARD H., HOFSTADLER, STEVEN A., MCNEIL, JOHN, SAMPATH, RANGARAJAN
Priority to US10/660,996 priority patent/US7255992B2/en
Priority to PCT/US2003/038757 priority patent/WO2004053076A2/en
Priority to AU2003297997A priority patent/AU2003297997A1/en
Priority to US10/808,932 priority patent/US20040253619A1/en
Priority to US10/814,754 priority patent/US20040253583A1/en
Publication of US20040121314A1 publication Critical patent/US20040121314A1/en
Assigned to IBIS BIOSCIENCES, INC. reassignment IBIS BIOSCIENCES, INC. ASSIGNMENT OF ASSIGNORS INTEREST (SEE DOCUMENT FOR DETAILS). Assignors: ISIS PHARMACEUTICALS, INC.
Abandoned legal-status Critical Current

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    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844—Nucleic acid amplification reactions

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  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Organic Chemistry (AREA)
  • Engineering & Computer Science (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Health & Medical Sciences (AREA)
  • Molecular Biology (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Immunology (AREA)
  • Microbiology (AREA)
  • Biophysics (AREA)
  • Analytical Chemistry (AREA)
  • Physics & Mathematics (AREA)
  • Biotechnology (AREA)
  • Biochemistry (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Other Investigation Or Analysis Of Materials By Electrical Means (AREA)
  • Investigating Or Analysing Materials By The Use Of Chemical Reactions (AREA)
US10/326,642 2001-03-02 2002-12-18 Methods for rapid detection and identification of bioagents in containers Abandoned US20040121314A1 (en)

Priority Applications (6)

Application Number Priority Date Filing Date Title
US10/326,642 US20040121314A1 (en) 2002-12-06 2002-12-18 Methods for rapid detection and identification of bioagents in containers
US10/660,996 US7255992B2 (en) 2001-03-02 2003-09-12 Methods for rapid detection and identification of bioagents for environmental and product testing
PCT/US2003/038757 WO2004053076A2 (en) 2002-12-06 2003-12-05 Methods for rapid detection and identification of bioagents for environmental and product testing
AU2003297997A AU2003297997A1 (en) 2002-12-06 2003-12-05 Methods for rapid detection and identification of bioagents for environmental and product testing
US10/808,932 US20040253619A1 (en) 2002-12-06 2004-03-25 Methods for rapid detection and identification of bacterial bioagents
US10/814,754 US20040253583A1 (en) 2002-12-06 2004-03-31 Methods for rapid detection and identification of viral bioagents

Applications Claiming Priority (8)

Application Number Priority Date Filing Date Title
US43131902P 2002-12-06 2002-12-06
US32318602A 2002-12-18 2002-12-18
US10/326,047 US20030190605A1 (en) 2001-03-02 2002-12-18 Methods for rapid detection and identification of bioagents for environmental testing
US10/326,642 US20040121314A1 (en) 2002-12-06 2002-12-18 Methods for rapid detection and identification of bioagents in containers
US44378803P 2003-01-30 2003-01-30
US45360703P 2003-03-10 2003-03-10
US45416503P 2003-03-12 2003-03-12
US10/660,996 US7255992B2 (en) 2001-03-02 2003-09-12 Methods for rapid detection and identification of bioagents for environmental and product testing

Related Child Applications (2)

Application Number Title Priority Date Filing Date
US10/808,932 Continuation US20040253619A1 (en) 2002-12-06 2004-03-25 Methods for rapid detection and identification of bacterial bioagents
US10/814,754 Continuation US20040253583A1 (en) 2002-12-06 2004-03-31 Methods for rapid detection and identification of viral bioagents

Publications (1)

Publication Number Publication Date
US20040121314A1 true US20040121314A1 (en) 2004-06-24

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Family Applications (4)

Application Number Title Priority Date Filing Date
US10/326,642 Abandoned US20040121314A1 (en) 2001-03-02 2002-12-18 Methods for rapid detection and identification of bioagents in containers
US10/660,996 Expired - Fee Related US7255992B2 (en) 2001-03-02 2003-09-12 Methods for rapid detection and identification of bioagents for environmental and product testing
US10/808,932 Abandoned US20040253619A1 (en) 2002-12-06 2004-03-25 Methods for rapid detection and identification of bacterial bioagents
US10/814,754 Abandoned US20040253583A1 (en) 2002-12-06 2004-03-31 Methods for rapid detection and identification of viral bioagents

Family Applications After (3)

Application Number Title Priority Date Filing Date
US10/660,996 Expired - Fee Related US7255992B2 (en) 2001-03-02 2003-09-12 Methods for rapid detection and identification of bioagents for environmental and product testing
US10/808,932 Abandoned US20040253619A1 (en) 2002-12-06 2004-03-25 Methods for rapid detection and identification of bacterial bioagents
US10/814,754 Abandoned US20040253583A1 (en) 2002-12-06 2004-03-31 Methods for rapid detection and identification of viral bioagents

Country Status (3)

Country Link
US (4) US20040121314A1 (US20040121314A1-20040624-P00807.png)
AU (1) AU2003297997A1 (US20040121314A1-20040624-P00807.png)
WO (1) WO2004053076A2 (US20040121314A1-20040624-P00807.png)

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US20080227087A1 (en) * 2005-10-11 2008-09-18 Ann Huletsky Sequences for detection and identification of methicillin-resistant Staphylococcus aureus (MRSA) of MREJ types xi to xx
US20090263809A1 (en) * 2008-03-20 2009-10-22 Zygem Corporation Limited Methods for Identification of Bioagents
US7666588B2 (en) 2001-03-02 2010-02-23 Ibis Biosciences, Inc. Methods for rapid forensic analysis of mitochondrial DNA and characterization of mitochondrial DNA heteroplasmy
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US7718354B2 (en) 2001-03-02 2010-05-18 Ibis Biosciences, Inc. Methods for rapid identification of pathogens in humans and animals
US7741036B2 (en) 2001-03-02 2010-06-22 Ibis Biosciences, Inc. Method for rapid detection and identification of bioagents
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US8026084B2 (en) 2005-07-21 2011-09-27 Ibis Biosciences, Inc. Methods for rapid identification and quantitation of nucleic acid variants
US8046171B2 (en) 2003-04-18 2011-10-25 Ibis Biosciences, Inc. Methods and apparatus for genetic evaluation
US8057993B2 (en) 2003-04-26 2011-11-15 Ibis Biosciences, Inc. Methods for identification of coronaviruses
US8073627B2 (en) 2001-06-26 2011-12-06 Ibis Biosciences, Inc. System for indentification of pathogens
US8071309B2 (en) 2002-12-06 2011-12-06 Ibis Biosciences, Inc. Methods for rapid identification of pathogens in humans and animals
US8084207B2 (en) 2005-03-03 2011-12-27 Ibis Bioscience, Inc. Compositions for use in identification of papillomavirus
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US8148163B2 (en) 2008-09-16 2012-04-03 Ibis Biosciences, Inc. Sample processing units, systems, and related methods
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US8158936B2 (en) 2009-02-12 2012-04-17 Ibis Biosciences, Inc. Ionization probe assemblies
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US8298760B2 (en) 2001-06-26 2012-10-30 Ibis Bioscience, Inc. Secondary structure defining database and methods for determining identity and geographic origin of an unknown bioagent thereby
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US8407010B2 (en) 2004-05-25 2013-03-26 Ibis Biosciences, Inc. Methods for rapid forensic analysis of mitochondrial DNA
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US8546082B2 (en) 2003-09-11 2013-10-01 Ibis Biosciences, Inc. Methods for identification of sepsis-causing bacteria
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US8871471B2 (en) 2007-02-23 2014-10-28 Ibis Biosciences, Inc. Methods for rapid forensic DNA analysis
US8950604B2 (en) 2009-07-17 2015-02-10 Ibis Biosciences, Inc. Lift and mount apparatus
US9068017B2 (en) 2010-04-08 2015-06-30 Ibis Biosciences, Inc. Compositions and methods for inhibiting terminal transferase activity
US9149473B2 (en) 2006-09-14 2015-10-06 Ibis Biosciences, Inc. Targeted whole genome amplification method for identification of pathogens
US9194877B2 (en) 2009-07-17 2015-11-24 Ibis Biosciences, Inc. Systems for bioagent indentification
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US9416409B2 (en) 2009-07-31 2016-08-16 Ibis Biosciences, Inc. Capture primers and capture sequence linked solid supports for molecular diagnostic tests
US9598724B2 (en) 2007-06-01 2017-03-21 Ibis Biosciences, Inc. Methods and compositions for multiple displacement amplification of nucleic acids
US9777335B2 (en) 2001-06-04 2017-10-03 Geneohm Sciences Canada Inc. Method for the detection and identification of methicillin-resistant Staphylococcus aureus
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US20040253583A1 (en) 2004-12-16
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US20040180328A1 (en) 2004-09-16
US20040253619A1 (en) 2004-12-16

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