US20030166241A1

US20030166241A1 - Plant amino acyl-tRNA synthetase

Info

Publication number: US20030166241A1
Application number: US09/846,589
Authority: US
Inventors: Omolayo Famodu; Carl Simmons
Original assignee: Individual
Current assignee: Individual
Priority date: 1998-07-15
Filing date: 2001-05-01
Publication date: 2003-09-04
Also published as: US20040214216A1; US6255090B1

Abstract

This invention relates to an isolated nucleic acid fragment encoding an aminoacyl-tRNA synthetase. The invention also relates to the construction of a chimeric gene encoding all or a portion of the aminoacyl-tRNA synthetase, in sense or antisense orientation, wherein expression of the chimeric gene results in production of altered levels of the aminoacyl-tRNA synthetase in a transformed host cell.

Description

This application claims the benefit of U.S. Provisional Application No. 60/092,866, filed Jul. 15, 1998.

FIELD OF THE INVENTION

This invention is in the field of plant molecular biology. More specifically, this invention pertains to nucleic acid fragments encoding aminoacyl-tRNA synthetase in plants and seeds.

BACKGROUND OF THE INVENTION

All tRNAs have two functions: to chemically link to a specific amino acid and to recognize a codon in mRNA so that the linked amino acid can be added to a growing peptide chain during protein synthesis. In general there is at least one aminoacyl-tRNA synthetase for each of the twenty amino acids. A specific aminoacyl-tRNA synthetase links an amino acid to the 2′ or 3′ hydroxyl of the adenosine residue at the 3′-terminus of a tRNA molecule. Once its correct amino acid is attached, a tRNA then recognizes a codon in mRNA, thus deliverng its amino acid to the growing polypeptide chain. These enzymatic functions are critical to gene expression (Neidhart et al. (1975) Annu. Rev. Microbiol. 29:215-250). Mutations in tRNA synthetases often result in alterations in protein synthesis and in some cases cell death.

Plants like other cellular organisms have aminoacyl-tRNA synthetases. However a complete description of the plant ‘complement’ of aminoacyl-tRNA synthetases has not been published. It is anticipated that plants will likely have at least forty aminoacyl-tRNA synthetases. Plants have three sites of protein synthesis: the cytoplasm, the mitochondria and the chloroplast. Accordingly, there could be as many as sixty aminoacyl-tRNA synthetases. Based on knowledge of other eukaryotes the cytoplasmic and mitochondrial aminoacyl-tRNA synthetases are expected to be encoded by the same gene. This gene should be nuclearly encoded and produce two alternate products, one with a mitochondrial specific transit peptide, and the other without this targeting signal. The chloroplast is the other site of protein synthesis in plants. Based on a few examples of known plant chloroplast specific aminoacyl-tRNA synthetase genes it appears that these genes are also nuclear-encoded. Chloroplast aminoacyl-tRNA synthetases are directed to the chloroplast by a transit peptide.

Because of the central role aminoacyl-tRNA synthetases play in protein synthesis any agent that inhibits or disrupts aminoacyl-tRNA synthetase activity is likely to be toxic. Indeed a number of aminoacyl-tRNA synthetase inhibitors (antibiotics and herbicides) are known (Zon et al. (1988) Phytochemistry 27(3):711-714 and Heacock et al. (1996) Bioorganic Chemistry 24(3):273-289). Thus it may be possible to develop new herbicides that target aminoacyl-tRNA synthetases and engineer aminoacyl-tRNA synthetases that are resistant to such herbicides. Accordingly, the availability of nucleic acid sequences encoding all or a portion of these enzymes would facilitate studies to better understand protein synthesis in plants, provide genetic tools for the manipulation of gene expression, and provide a possible target for herbicides.

SUMMARY OF THE INVENTION

The instant invention relates to isolated nucleic acid fragments encoding aminoacyl-tRNA synthetase. Specifically, this invention concerns an isolated nucleic acid fragment encoding an aspartyl-tRNA synthetase, cysteinyl-tRNA synthetase, tryptophanyl-tRNA synthetase or tyrosyl-tRNA synthetase and an isolated nucleic acid fragment that is substantially similar to an isolated nucleic acid fragment encoding an aspartyl-tRNA synthetase, cysteinyl-tRNA synthetase, tryptophanyl-tRNA synthetase or tyrosyl-tRNA synthetase. In addition, this invention relates to a nucleic acid fragment that is complementary to the nucleic acid fragment encoding aspartyl-tRNA synthetase, cysteinyl-tRNA synthetase, tryptophanyl-tRNA synthetase or tyrosyl-tRNA synthetase.

An additional embodiment of the instant invention pertains to a polypeptide encoding all or a substantial portion of an aminoacyl-tRNA synthetaseselected from the group consisting of aspartyl-tRNA synthetase, cysteinyl-tRNA synthetase, tryptophanyl-tRNA synthetase and tyrosyl-tRNA synthetase.

In another embodiment, the instant invention relates to a chimeric gene encoding an aspartyl-tRNA synthetase, cysteinyl-tRNA synthetase, tryptophanyl-tRNA synthetase or tyrosyl-tRNA synthetase, or to a chimeric gene that comprises a nucleic acid fragment that is complementary to a nucleic acid fragment encoding an aspartyl-tRNA synthetase, cysteinyl-tRNA synthetase, tryptophanyl-tRNA synthetase or tyrosyl-tRNA synthetase, operably linked to suitable regulatory sequences, wherein expression of the chimeric gene results in production of levels of the encoded protein in a transformed host cell that is altered (i.e., increased or decreased) from the level produced in an untransformed host cell.

In a further embodiment, the instant invention concerns a transformed host cell comprising in its genome a chimeric gene encoding an aspartyl-tRNA synthetase, cysteinyl-tRNA synthetase, tryptophanyl-tRNA synthetase or tyrosyl-tRNA synthetase, operably linked to suitable regulatory sequences. Expression of the chimeric gene results in production of altered levels of the encoded protein in the transformed host cell. The transformed host cell can be of eukaryotic or prokaryotic origin, and include cells derived from higher plants and microorganisms. The invention also includes transformed plants that arise from transformed host cells of higher plants, and seeds derived from such transformed plants.

An additional embodiment of the instant invention concerns a method of altering the level of expression of an aspartyl-tRNA synthetase, cysteinyl-tRNA synthetase, tryptophanyl-tRNA synthetase or tyrosyl-tRNA synthetase in a transformed host cell comprising: a) transforming a host cell with a chimeric gene comprising a nucleic acid fragment encoding an aspartyl-tRNA synthetase, cysteinyl-tRNA synthetase, tryptophanyl-tRNA synthetase or tyrosyl-tRNA synthetase; and b) growing the transformed host cell under conditions that are suitable for expression of the chimeric gene wherein expression of the chimeric gene results in production of altered levels of aspartyl-tRNA synthetase, cysteinyl-tRNA synthetase, tryptophanyl-tRNA synthetase or tyrosyl-tRNA synthetase in the transformed host cell.

An addition embodiment of the instant invention concerns a method for obtaining a nucleic acid fragment encoding all or a substantial portion of an amino acid sequence encoding an aspartyl-tRNA synthetase, cysteinyl-tRNA synthetase, tryptophanyl-tRNA synthetase or tyrosyl-tRNA synthetase.

A further embodiment of the instant invention is a method for evaluating at least one compound for its ability to inhibit the activity of an aspartyl-tRNA synthetase, cysteinyl-tRNA synthetase, tryptophanyl-tRNA synthetase or tyrosyl-tRNA synthetase, the method comprising the steps of: (a) transforming a host cell with a chimeric gene comprising a nucleic acid fragment encoding an aspartyl-tRNA synthetase, cysteinyl-tRNA synthetase, tryptophanyl-tRNA synthetase or tyrosyl-tRNA synthetase, operably linked to suitable regulatory sequences; (b) growing the transformed host cell under conditions that are suitable for expression of the chimeric gene wherein expression of the chimeric gene results in production of aspartyl-tRNA synthetase, cysteinyl-tRNA synthetase, tryptophanyl-tRNA synthetase or tyrosyl-tRNA synthetase in the transformed host cell; (c) optionally purifying the aspartyl-tRNA synthetase, cysteinyl-tRNA synthetase, tryptophanyl-tRNA synthetase or tyrosyl-tRNA synthetase expressed by the transformed host cell; (d) treating the aspartyl-tRNA synthetase, cysteinyl-tRNA synthetase, tryptophanyl-tRNA synthetase or tyrosyl-tRNA synthetase with a compound to be tested; and (e) comparing the activity of the aspartyl-tRNA synthetase, cysteinyl-tRNA synthetase, tryptophanyl-tRNA synthetase or tyrosyl-tRNA synthetase that has been treated with a test compound to the activity of an untreated aspartyl-tRNA synthetase, cysteinyl-tRNA synthetase, tryptophanyl-tRNA synthetase or tyrosyl-tRNA synthetase, thereby selecting compounds with potential for inhibitory activity.

BRIEF DESCRIPTION OF THE SEQUENCE DESCRIPTIONS

The invention can be more fully understood from the following detailed description and the accompanying Sequence Listing which form a part of this application.

Table 1 lists the polypeptides that are described herein, the designation of the cDNA clones that comprise the nucleic acid fragments encoding polypeptides representing all or a substantial portion of these polypeptides, and the corresponding identifier (SEQ ID NO:) as used in the attached Sequence Listing. The sequence descriptions and Sequence Listing attached hereto comply with the rules governing nucleotide and/or amino acid sequence disclosures in patent applications as set forth in 37 C.F.R. §1.821-1.825.

TABLE 1


Aninoacyl-tRNA Synthetase

SEQ ID NO:

			(Amino
Protein	Clone Designation	(Nucleotide)	Acid)

Aspartyl-tRNA Synthetase	p0094.cssth73r	1	2
Aspartyl-tRNA Synthetase	rl0n.pk0015.g11	3	4
Aspartyl-tRNA Synthetase	sfl1.pk0046.e8	5	6
Aspartyl-tRNA Synthetase	wle1n.pk0021.e6	7	8
Cysteinyl-tRNA Synthetase	p0119.cmtmt52r	9	10
Cysteinyl-tRNA Synthetase	rsl1n.pk016.p18	11	12
Cysteinyl-tRNA Synthetase	sfl1.pk0013.f9	13	14
Tryptophanyl-tRNA	p0118.chsbl87r	15	16
Synthetase
Tryptophanyl-tRNA	sdp4c.pk033.n11	17	18
Synthetase
Tryptophanyl-tRNA	wlm4.pk0013.c12	19	20
Synthetase
Tyrosyl-tRNA Synthetase	cs1.pk0035.d2	21	22

The Sequence Listing contains the one letter code for nucleotide sequence characters and the three letter codes for amino acids as defined in conformity with the IUPAC-IUBMB standards described in Nucleic Acids Research 13:3021-3030 (1985) and in the Biochemical Journal 219 (No. 2):345-373 (1984) which are herein incorporated by reference. The symbols and format used for nucleotide and amino acid sequence data comply with the rules set forth in 37 C.F.R. §1.822.

DETAILED DESCRIPTION OF THE INVENTION

In the context of this disclosure, a number of terms shall be utilized. As used herein, a “nucleic acid fragment” is a polymer of RNA or DNA that is single- or double-stranded, optionally containing synthetic, non-natural or altered nucleotide bases. A nucleic acid fragment in the form of a polymer of DNA may be comprised of one or more segments of cDNA, genomic DNA or synthetic DNA.

As used herein, “substantially similar” refers to nucleic acid fragments wherein changes in one or more nucleotide bases results in substitution of one or more amino acids, but do not affect the functional properties of the polypeptide encoded by the nucleotide sequence. “Substantially similar” also refers to nucleic acid fragments wherein changes in one or more nucleotide bases does not affect the ability of the nucleic acid fragment to mediate alteration of gene expression by gene silencing through for example antisense or co-suppression technology. “Substantially similar” also refers to modifications of the nucleic acid fragments of the instant invention such as deletion or insertion of one or more nucleotides that do not substantially affect the functional properties of the resulting transcript vis-à-vis the ability to mediate gene silencing or alteration of the functional properties of the resulting protein molecule. It is therefore understood that the invention encompasses more than the specific exemplary nucleotide or amino acid sequences and includes functional equivalents thereof.

For example, it is well known in the art that antisense suppression and co-suppression of gene expression may be accomplished using nucleic acid fragments representing less than the entire coding region of a gene, and by nucleic acid fragments that do not share 100% sequence identity with the gene to be suppressed. Moreover, alterations in a nucleic acid fragment which result in the production of a chemically equivalent amino acid at a given site, but do not effect the functional properties of the encoded polypeptide, are well known in the art. Thus, a codon for the amino acid alanine, a hydrophobic amino acid, may be substituted by a codon encoding another less hydrophobic residue, such as glycine, or a more hydrophobic residue, such as valine, leucine, or isoleucine. Similarly, changes which result in substitution of one negatively charged residue for another, such as aspartic acid for glutamic acid, or one positively charged residue for another, such as lysine for arginine, can also be expected to produce a functionally equivalent product. Nucleotide changes which result in alteration of the N-terminal and C-terminal portions of the polypeptide molecule would also not be expected to alter the activity of the polypeptide. Each of the proposed modifications is well within the routine skill in the art, as is determination of retention of biological activity of the encoded products.

Moreover, substantially similar nucleic acid fragments may also be characterized by their ability to hybridize. Estimates of such homology are provided by either DNA-DNA or DNA-RNA hybridization under conditions of stringency as is well understood by those skilled in the art (Hames and Higgins, Eds. (1985) Nucleic Acid Hybridisation, IRL Press, Oxford, U.K.). Stringency conditions can be adjusted to screen for moderately similar fragments, such as homologous sequences from distantly related organisms, to highly similar fragments, such as genes that duplicate functional enzymes from closely related organisms. Post-hybridization washes determine stringency conditions. One set of preferred conditions uses a series of washes starting with 6× SSC, 0.5% SDS at room temperature for 15 min, then repeated with 2× SSC, 0.5% SDS at 45° C. for 30 min, and then repeated twice with 0.2× SSC, 0.5% SDS at 50° C. for 30 min. A more preferred set of stringent conditions uses higher temperatures in which the washes are identical to those above except for the temperature of the final two 30 min washes in 0.2× SSC, 0.5% SDS was increased to 60° C. Another preferred set of highly stringent conditions uses two final washes in 0.1× SSC, 0.1% SDS at 65° C.

Substantially similar nucleic acid fragments of the instant invention may also be characterized by the percent identity of the amino acid sequences that they encode to the amino acid sequences disclosed herein, as determined by algorithms commonly employed by those skilled in this art. Preferred are those nucleic acid fragments whose nucleotide sequences encode amino acid sequences that are 80% identical to the amino acid sequences reported herein. More preferred nucleic acid fragments encode amino acid sequences that are 90% identical to the amino acid sequences reported herein. Most preferred are nucleic acid fragments that encode amino acid sequences that are 95% identical to the amino acid sequences reported herein. Sequence alignments and percent identity calculations were performed using the Megalign program of the LASARGENE bioinformatics computing suite (DNASTAR Inc., Madison, Wis.). Multiple alignment of the sequences was performed using the Clustal method of alignment (Higgins and Sharp (1989) CABIOS. 5:151-153) with the default parameters (GAP PENALTY=10, GAP LENGTH PENALTY=10). Default parameters for pairwise alignments using the Clustal method were KTUPLE 1, GAP PENALTY=3, WINDOW=5 and DIAGONALS SAVED=5.

A “substantial portion” of an amino acid or nucleotide sequence comprises an amino acid or a nucleotide sequence that is sufficient to afford putative identification of the protein or gene that the amino acid or nucleotide sequence comprises. Amino acid and nucleotide sequences can be evaluated either manually by one skilled in the art, or by using computer-based sequence comparison and identification tools that employ algorithms such as BLAST (Basic Local Alignment Search Tool; Altschul et al. (1993) J Mol. Biol. 215:403-410; see also www.ncbi.nlm.nih.gov/BLAST/). In general, a sequence of ten or more contiguous amino acids or thirty or more contiguous nucleotides is necessary in order to putatively identify a polypeptide or nucleic acid sequence as homologous to a known protein or gene. Moreover, with respect to nucleotide sequences, gene-specific oligonucleotide probes comprising 30 or more contiguous nucleotides may be used in sequence-dependent methods of gene identification (e.g., Southern hybridization) and isolation (e.g., in situ hybridization of bacterial colonies or bacteriophage plaques). In addition, short oligonucleotides of 12 or more nucleotides may be used as amplification primers in PCR in order to obtain a particular nucleic acid fragment comprising the primers. Accordingly, a “substantial portion” of a nucleotide sequence comprises a nucleotide sequence that will afford specific identification and/or isolation of a nucleic acid fragment comprising the sequence. The instant specification teaches amino acid and nucleotide sequences encoding polypeptides that comprise one or more particular plant proteins. The skilled artisan, having the benefit of the sequences as reported herein, may now use all or a substantial portion of the disclosed sequences for purposes known to those skilled in this art. Accordingly, the instant invention comprises the complete sequences as reported in the accompanying Sequence Listing, as well as substantial portions of those sequences as defined above.

“Codon degeneracy” refers to divergence in the genetic code permitting variation of the nucleotide sequence without effecting the amino acid sequence of an encoded polypeptide. Accordingly, the instant invention relates to any nucleic acid fragment comprising a nucleotide sequence that encodes all or a substantial portion of the amino acid sequences set forth herein. The skilled artisan is well aware of the “codon-bias” exhibited by a specific host cell in usage of nucleotide codons to specify a given amino acid. Therefore, when synthesizing a nucleic acid fragment for improved expression in a host cell, it is desirable to design the nucleic acid fragment such that its frequency of codon usage approaches the frequency of preferred codon usage of the host cell.

“Synthetic nucleic acid fragments” can be assembled from oligonucleotide building blocks that are chemically synthesized using procedures known to those skilled in the art. These building blocks are ligated and annealed to form larger nucleic acid fragments which may then be enzymatically assembled to construct the entire desired nucleic acid fragment. “Chemically synthesized”, as related to nucleic acid fragment, means that the component nucleotides were assembled in vitro. Manual chemical synthesis of nucleic acid fragments may be accomplished using well established procedures, or automated chemical synthesis can be performed using one of a number of commercially available machines. Accordingly, the nucleic acid fragments can be tailored for optimal gene expression based on optimization of nucleotide sequence to reflect the codon bias of the host cell. The skilled artisan appreciates the likelihood of successful gene expression if codon usage is biased towards those codons favored by the host. Determination of preferred codons can be based on a survey of genes derived from the host cell where sequence information is available.

“Gene” refers to a nucleic acid fragment that expresses a specific protein, including regulatory sequences preceding (5′ non-coding sequences) and following (3′ non-coding sequences) the coding sequence. “Native gene” refers to a gene as found in nature with its own regulatory sequences. “Chimeric gene” refers any gene that is not a native gene, comprising regulatory and coding sequences that are not found together in nature. Accordingly, a chimeric gene may comprise regulatory sequences and coding sequences that are derived from different sources, or regulatory sequences and coding sequences derived from the same source, but arranged in a manner different than that found in nature. “Endogenous gene” refers to a native gene in its natural location in the genome of an organism. A “foreign” gene refers to a gene not normally found in the host organism, but that is introduced into the host organism by gene transfer. Foreign genes can comprise native genes inserted into a non-native organism, or chimeric genes. A “transgene” is a gene that has been introduced into the genome by a transformation procedure.

“Coding sequence” refers to a nucleotide sequence that codes for a specific amino acid sequence. “Regulatory sequences” refer to nucleotide sequences located upstream (5′ non-coding sequences), within, or downstream (3′ non-coding sequences) of a coding sequence, and which influence the transcription, RNA processing or stability, or translation of the associated coding sequence. Regulatory sequences may include promoters, translation leader sequences, introns, and polyadenylation recognition sequences.

“Promoter” refers to a nucleotide sequence capable of controlling the expression of a coding sequence or functional RNA. In general, a coding sequence is located 3′ to a promoter sequence. The promoter sequence consists of proximal and more distal upstream elements, the latter elements often referred to as enhancers. Accordingly, an “enhancer” is a nucleotide sequence which can stimulate promoter activity and may be an innate element of the promoter or a heterologous element inserted to enhance the level or tissue-specificity of a promoter. Promoters may be derived in their entirety from a native gene, or be composed of different elements derived from different promoters found in nature, or even comprise synthetic nucleotide segments. It is understood by those skilled in the art that different promoters may direct the expression of a gene in different tissues or cell types, or at different stages of development, or in response to different environmental conditions. Promoters which cause a nucleic acid fragment to be expressed in most cell types at most times are commonly referred to as “constitutive promoters”. New promoters of various types useful in plant cells are constantly being discovered; numerous examples may be found in the compilation by Okamuro and Goldberg (1989) Biochemistry of Plants 15:1-82. It is further recognized that since in most cases the exact boundaries of regulatory sequences have not been completely defined, nucleic acid fragments of different lengths may have identical promoter activity.

The “translation leader sequence” refers to a nucleotide sequence located between the promoter sequence of a gene and the coding sequence. The translation leader sequence is present in the fully processed mRNA upstream of the translation start sequence. The translation leader sequence may affect processing of the primary transcript to mRNA, mRNA stability or translation efficiency. Examples of translation leader sequences have been described (Turner and Foster (1995) Molecular Biotechnology 3:225).

The “3′ non-coding sequences” refer to nucleotide sequences located downstream of a coding sequence and include polyadenylation recognition sequences and other sequences encoding regulatory signals capable of affecting mRNA processing or gene expression. The polyadenylation signal is usually characterized by affecting the addition of polyadenylic acid tracts to the 3′ end of the mRNA precursor. The use of different 3′ non-coding sequences is exemplified by Ingelbrecht et al. (1989) Plant Cell 1:671-680.

“RNA transcript” refers to the product resulting from RNA polymerase-catalyzed transcription of a DNA sequence. When the RNA transcript is a perfect complementary copy of the DNA sequence, it is referred to as the primary transcript or it may be a RNA sequence derived from posttranscriptional processing of the primary transcript and is referred to as the mature RNA. “Messenger RNA (mRNA)” refers to the RNA that is without introns and that can be translated into polypeptide by the cell. “cDNA” refers to a double-stranded DNA that is complementary to and derived from mRNA. “Sense” RNA refers to an RNA transcript that includes the mRNA and so can be translated into a polypeptide by the cell. “Antisense RNA” refers to an RNA transcript that is complementary to all or part of a target primary transcript or mRNA and that blocks the expression of a target gene (see U.S. Pat. No. 5,107,065, incorporated herein by reference). The complementarity of an antisense RNA may be with any part of the specific nucleotide sequence, i.e., at the 5′ non-coding sequence, 3′ non-coding sequence, introns, or the coding sequence. “Functional RNA” refers to sense RNA, antisense RNA, ribozyme RNA, or other RNA that may not be translated but yet has an effect on cellular processes.

The term “operably linked” refers to the association of two or more nucleic acid fragments on a single nucleic acid fragment so that the function of one is affected by the other. For example, a promoter is operably linked with a coding sequence when it is capable of affecting the expression of that coding sequence (i.e., that the coding sequence is under the transcriptional control of the promoter). Coding sequences can be operably linked to regulatory sequences in sense or antisense orientation.

The term “expression”, as used herein, refers to the transcription and stable accumulation of sense (mRNA) or antisense RNA derived from the nucleic acid fragment of the invention. Expression may also refer to translation of mRNA into a polypeptide. “Antisense inhibition” refers to the production of antisense RNA transcripts capable of suppressing the expression of the target protein. “Overexpression” refers to the production of a gene product in transgenic organisms that exceeds levels of production in normal or non-transformed organisms. “Co-suppression” refers to the production of sense RNA transcripts capable of suppressing the expression of identical or substantially similar foreign or endogenous genes (U.S. Pat. No. 5,231,020, incorporated herein by reference).

“Altered levels” refers to the production of gene product(s) in transgenic organisms in amounts or proportions that differ from that of normal or non-transformed organisms.

“Mature” protein refers to a post-translationally processed polypeptide; i.e., one from which any pre- or propeptides present in the primary translation product have been removed. “Precursor” protein refers to the primary product of translation of mRNA; i.e., with pre- and propeptides still present. Pre- and propeptides may be but are not limited to intracellular localization signals.

A “chloroplast transit peptide” is an amino acid sequence which is translated in conjunction with a protein and directs the protein to the chloroplast or other plastid types present in the cell in which the protein is made. “Chloroplast transit sequence” refers to a nucleotide sequence that encodes a chloroplast transit peptide. A “signal peptide” is an amino acid sequence which is translated in conjunction with a protein and directs the protein to the secretory system (Chrispeels (1991) Ann. Rev. Plant Phys. Plant Mol. Biol. 42:21-53). If the protein is to be directed to a vacuole, a vacuolar targeting signal (supra) can further be added, or if to the endoplasmic reticulum, an endoplasmic reticulum retention signal (supra) may be added. If the protein is to be directed to the nucleus, any signal peptide present should be removed and instead a nuclear localization signal included (Raikhel (1992) Plant Phys. 100:1627-1632).

“Transformation” refers to the transfer of a nucleic acid fragment into the genome of a host organism, resulting in genetically stable inheritance. Host organisms containing the transformed nucleic acid fragments are referred to as “transgenic” organisms. Examples of methods of plant transformation include Agrobacterium-mediated transformation (De Blaere et al. (1987) Meth. Enzymol. 143:277) and particle-accelerated or “gene gun” transformation technology (Klein et al. (1987) Nature (London) 327:70-73; U.S. Pat. No. 4,945,050, incorporated herein by reference).

Standard recombinant DNA and molecular cloning techniques used herein are well known in the art and are described more fully in Sambrook et al. Molecular Cloning: A Laboratory Manual; Cold Spring Harbor Laboratory Press: Cold Spring Harbor, 1989 (hereinafter “Maniatis”).

Nucleic acid fragments encoding at least a portion of several aninoacyl-tRNA synthetases have been isolated and identified by comparison of random plant cDNA sequences to public databases containing nucleotide and protein sequences using the BLAST algorithms well known to those skilled in the art. The nucleic acid fragments of the instant invention may be used to isolate cDNAs and genes encoding homologous proteins from the same or other plant species. Isolation of homologous genes using sequence-dependent protocols is well known in the art. Examples of sequence-dependent protocols include, but are not limited to, methods of nucleic acid hybridization, and methods of DNA and RNA amplification as exemplified by various uses of nucleic acid amplification technologies (e.g., polymerase chain reaction, ligase chain reaction).

For example, genes encoding other aspartyl-tRNA synthetase, cysteinyl-tRNA synthetase, tryptophanyl-tRNA synthetase or tyrosyl-tRNA synthetase enzymes, either as cDNAs or genomic DNAs, could be isolated directly by using all or a portion of the instant nucleic acid fragments as DNA hybridization probes to screen libraries from any desired plant employing methodology well known to those skilled in the art. Specific oligonucleotide probes based upon the instant nucleic acid sequences can be designed and synthesized by methods known in the art (Maniatis). Moreover, the entire sequences can be used directly to synthesize DNA probes by methods known to the skilled artisan such as random primer DNA labeling, nick translation, or end-labeling techniques, or RNA probes using available in vitro transcription systems. In addition, specific primers can be designed and used to amplify a part or all of the instant sequences. The resulting amplification products can be labeled directly during amplification reactions or labeled after amplification reactions, and used as probes to isolate full length cDNA or genomic fragments under conditions of appropriate stringency.

In addition, two short segments of the instant nucleic acid fragments may be used in polymerase chain reaction protocols to amplify longer nucleic acid fragments encoding homologous genes from DNA or RNA. The polymerase chain reaction may also be performed on a library of cloned nucleic acid fragments wherein the sequence of one primer is derived from the instant nucleic acid fragments, and the sequence of the other primer takes advantage of the presence of the polyadenylic acid tracts to the 3′ end of the mRNA precursor encoding plant genes. Alternatively, the second primer sequence may be based upon sequences derived from the cloning vector. For example, the skilled artisan can follow the RACE protocol (Frohman et al. (1988) Proc. Natl. Acad. Sci. USA 85:8998) to generate cDNAs by using PCR to amplify copies of the region between a single point in the transcript and the 3′ or 5′ end. Primers oriented in the 3′ and 5′ directions can be designed from the instant sequences. Using commercially available 3′ RACE or 5′ RACE systems (BRL), specific 3′ or 5′ cDNA fragments can be isolated (Ohara et al. (1989) Proc. Natl. Acad. Sci. USA 86:5673; Loh et al. (1989) Science 243:217). Products generated by the 3′ and 5′ RACE procedures can be combined to generate full-length cDNAs (Frohman and Martin (1989) Techniques 1:165).

Availability of the instant nucleotide and deduced amino acid sequences facilitates immunological screening of cDNA expression libraries. Synthetic peptides representing portions of the instant amino acid sequences may be synthesized. These peptides can be used to immunize animals to produce polyclonal or monoclonal antibodies with specificity for peptides or proteins comprising the amino acid sequences. These antibodies can be then be used to screen cDNA expression libraries to isolate full-length cDNA clones of interest (Lerner (1984) Adv. Immunol. 36:1; Maniatis).

The nucleic acid fragments of the instant invention may be used to create transgenic plants in which the disclosed polypeptides are present at higher or lower levels than normal or in cell types or developmental stages in which they are not normally found. This would have the effect of altering the level of aminoacyl-tRNA synthetase activity in those cells.

Overexpression of the proteins of the instant invention may be accomplished by first constructing a chimeric gene in which the coding region is operably linked to a promoter capable of directing expression of a gene in the desired tissues at the desired stage of development. For reasons of convenience, the chimeric gene may comprise promoter sequences and translation leader sequences derived from the same genes. 3′ Non-coding sequences encoding transcription termination signals may also be provided. The instant chimeric gene may also comprise one or more introns in order to facilitate gene expression.

Plasmid vectors comprising the instant chimeric gene can then constructed. The choice of plasmid vector is dependent upon the method that will be used to transform host plants. The skilled artisan is well aware of the genetic elements that must be present on the plasmid vector in order to successfully transform, select and propagate host cells containing the chimeric gene. The skilled artisan will also recognize that different independent transformation events will result in different levels and patterns of expression (Jones et al. (1985) EMBO J. 4:2411-2418; De Almeida et al. (1989) Mol. Gen. Genetics 218:78-86), and thus that multiple events must be screened in order to obtain lines displaying the desired expression level and pattern. Such screening may be accomplished by Southern analysis of DNA, Northern analysis of mRNA expression, Western analysis of protein expression, or phenotypic analysis.

For some applications it may be useful to direct the instant polypeptides to different cellular compartments, or to facilitate its secretion from the cell. It is thus envisioned that the chimeric gene described above may be further supplemented by altering the coding sequence to encode the instant polypeptides with appropriate intracellular targeting sequences such as transit sequences (Keegstra (1989) Cell 56:247-253), signal sequences or sequences encoding endoplasmic reticulum localization (Chrispeels (1991) Ann. Rev. Plant Phys. Plant Mol. Biol. 42:21-53), or nuclear localization signals (Raikhel (1992) Plant Phys. 100:1627-1632) added and/or with targeting sequences that are already present removed. While the references cited give examples of each of these, the list is not exhaustive and more targeting signals of utility may be discovered in the future.

It may also be desirable to reduce or eliminate expression of genes encoding the instant polypeptides in plants for some applications. In order to accomplish this, a chimeric gene designed for co-suppression of the instant polypeptide can be constructed by linking a gene or gene fragment encoding that polypeptide to plant promoter sequences. Alternatively, a chimeric gene designed to express antisense RNA for all or part of the instant nucleic acid fragment can be constructed by linking the gene or gene fragment in reverse orientation to plant promoter sequences. Either the co-suppression or antisense chimeric genes could be introduced into plants via transformation wherein expression of the corresponding endogenous genes are reduced or eliminated.

Molecular genetic solutions to the generation of plants with altered gene expression have a decided advantage over more traditional plant breeding approaches. Changes in plant phenotypes can be produced by specifically inhibiting expression of one or more genes by antisense inhibition or cosuppression (U.S. Pat. Nos. 5,190,931, 5,107,065 and 5,283,323). An antisense or cosuppression construct would act as a dominant negative regulator of gene activity. While conventional mutations can yield negative regulation of gene activity these effects are most likely recessive. The dominant negative regulation available with a transgenic approach may be advantageous from a breeding perspective. In addition, the ability to restrict the expression of specific phenotype to the reproductive tissues of the plant by the use of tissue specific promoters may confer agronomic advantages relative to conventional mutations which may have an effect in all tissues in which a mutant gene is ordinarily expressed.

The person skilled in the art will know that special considerations are associated with the use of antisense or cosuppresion technologies in order to reduce expression of particular genes. For example, the proper level of expression of sense or antisense genes may require the use of different chimeric genes utilizing different regulatory elements known to the skilled artisan. Once transgenic plants are obtained by one of the methods described above, it will be necessary to screen individual transgenics for those that most effectively display the desired phenotype. Accordingly, the skilled artisan will develop methods for screening large numbers of transformants. The nature of these screens will generally be chosen on practical grounds, and is not an inherent part of the invention. For example, one can screen by looking for changes in gene expression by using antibodies specific for the protein encoded by the gene being suppressed, or one could establish assays that specifically measure enzyme activity. A preferred method will be one which allows large numbers of samples to be processed rapidly, since it will be expected that a large number of transformants will be negative for the desired phenotype.

The instant polypeptides (or portions thereof) may be produced in heterologous host cells, particularly in the cells of microbial hosts, and can be used to prepare antibodies to the these proteins by methods well known to those skilled in the art. The antibodies are useful for detecting the polypeptides of the instant invention in situ in cells or in vitro in cell extracts. Preferred heterologous host cells for production of the instant polypeptides are microbial hosts. Microbial expression systems and expression vectors containing regulatory sequences that direct high level expression of foreign proteins are well known to those skilled in the art. Any of these could be used to construct a chimeric gene for production of the instant polypeptides. This chimeric gene could then be introduced into appropriate microorganisms via transformation to provide high level expression of the encoded aninoacyl-tRNA synthetase. An example of a vector for high level expression of the instant polypeptides in a bacterial host is provided (Example 9).

Additionally, the instant polypeptides can be used as a targets to facilitate design and/or identification of inhibitors of those enzymes that may be useful as herbicides. This is desirable because the polypeptides described herein catalyze various steps in protein synthesis. Accordingly, inhibition of the activity of one or more of the enzymes described herein could lead to inhibition plant growth. Thus, the instant polypeptides could be appropriate for new herbicide discovery and design.

All or a substantial portion of the nucleic acid fragments of the instant invention may also be used as probes for genetically and physically mapping the genes that they are a part of, and as markers for traits linked to those genes. Such information may be useful in plant breeding in order to develop lines with desired phenotypes. For example, the instant nucleic acid fragments may be used as restriction fragment length polymorphism (RFLP) markers. Southern blots (Maniatis) of restriction-digested plant genomic DNA may be probed with the nucleic acid fragments of the instant invention. The resulting banding patterns may then be subjected to genetic analyses using computer programs such as MapMaker (Lander et al. (1987) Genomics 1:174-181) in order to construct a genetic map. In addition, the nucleic acid fragments of the instant invention may be used to probe Southern blots containing restriction endonuclease-treated genomic DNAs of a set of individuals representing parent and progeny of a defined genetic cross. Segregation of the DNA polymorphisms is noted and used to calculate the position of the instant nucleic acid sequence in the genetic map previously obtained using this population (Botstein et al. (1980) Am. J Hum. Genet. 32:314-331).

The production and use of plant gene-derived probes for use in genetic mapping is described in Bematzky and Tanksley (1986) Plant Mol. Biol. Reporter 4(1):37-41. Numerous publications describe genetic mapping of specific cDNA clones using the methodology outlined above or variations thereof. For example, F2 intercross populations, backcross populations, randomly mated populations, near isogenic lines, and other sets of individuals may be used for mapping. Such methodologies are well known to those skilled in the art.

Nucleic acid probes derived from the instant nucleic acid sequences may also be used for physical mapping (i.e., placement of sequences on physical maps; see Hoheisel et al. In: Nonmammalian Genomic Analysis: A Practical Guide, Academic press 1996, pp. 319-346, and references cited therein).

In another embodiment, nucleic acid probes derived from the instant nucleic acid sequences may be used in direct fluorescence in situ hybridization (FISH) mapping (Trask (1991) Trends Genet. 7:149-154). Although current methods of FISH mapping favor use of large clones (several to several hundred KB; see Laan et al. (1995) Genome Research 5:13-20), improvements in sensitivity may allow performance of FISH mapping using shorter probes.

A variety of nucleic acid amplification-based methods of genetic and physical mapping may be carried out using the instant nucleic acid sequences. Examples include allele-specific amplification (Kazazian (1989) J. Lab. Clin. Med. 114(2):95-96), polymorphism of PCR-amplified fragments (CAPS; Sheffield et al. (1993) Genomics 16:325-332), allele-specific ligation (Landegren et al. (1988) Science 241:1077-1080), nucleotide extension reactions (Sokolov (1990) Nucleic Acid Res. 18:3671), Radiation Hybrid Mapping (Walter et al. (1997) Nature Genetics 7:22-28) and Happy Mapping (Dear and Cook (1989) Nucleic Acid Res. 1 7:6795-6807). For these methods, the sequence of a nucleic acid fragment is used to design and produce primer pairs for use in the amplification reaction or in primer extension reactions. The design of such primers is well known to those skilled in the art. In methods employing PCR-based genetic mapping, it may be necessary to identify DNA sequence differences between the parents of the mapping cross in the region corresponding to the instant nucleic acid sequence. This, however, is generally not necessary for mapping methods.

Loss of function mutant phenotypes may be identified for the instant cDNA clones either by targeted gene disruption protocols or by identifying specific mutants for these genes contained in a maize population carrying mutations in all possible genes (Ballinger and Benzer (1989) Proc. Natl. Acad. Sci USA 86:9402; Koes et al. (1995)Proc. Natl. Acad. Sci USA 92:8149; Bensen et al. (1995) Plant Cell 7:75). The latter approach may be accomplished in two ways. First, short segments of the instant nucleic acid fragments may be used in polymerase chain reaction protocols in conjunction with a mutation tag sequence primer on DNAs prepared from a population of plants in which Mutator transposons or some other mutation-causing DNA element has been introduced (see Bensen, supra). The amplification of a specific DNA fragment with these primers indicates the insertion of the mutation tag element in or near the plant gene encoding the instant polypeptides. Alternatively, the instant nucleic acid fragment may be used as a hybridization probe against PCR amplification products generated from the mutation population using the mutation tag sequence primer in conjunction with an arbitrary genomic site primer, such as that for a restriction enzyme site-anchored synthetic adaptor. With either method, a plant containing a mutation in the endogenous gene encoding the instant polypeptides can be identified and obtained. This mutant plant can then be used to determine or confirm the natural function of the instant polypeptides disclosed herein.

EXAMPLES

The present invention is further defined in the following Examples, in which all parts and percentages are by weight and degrees are Celsius, unless otherwise stated. It should be understood that these Examples, while indicating preferred embodiments of the invention, are given by way of illustration only. From the above discussion and these Examples, one skilled in the art can ascertain the essential characteristics of this invention, and without departing from the spirit and scope thereof, can make various changes and modifications of the invention to adapt it to various usages and conditions. [0056]

Example 1

Composition of cDNA Libraries; Isolation and Sequencing of cDNA Clones

cDNA libraries representing mRNAs from various corn, rice, soybean and wheat tissues were prepared. The characteristics of the libraries are described below.

TABLE 2


cDNA Libraries from Corn, Rice, Soybean and Wheat

Library	Tissue	Clone

cs1	Corn leaf sheath from 5 week old plant	cs1.pk0035.d2
p0094	Corn ear leaf sheath, 2-3	p0094.cssth73r
	weeks after pollen shed*
p0118	Corn pooled stem tissue from	p0118.chsbl87r
	the 4-5 internodes subtending
	the tassel, V8-V12 stages*
p0119	Corn ear shoot/w husk: V-12 stage*	p0119.cmtmt52r
rl0n	Rice 15 day old leaf*	rl0n.pk0015.g11
rsl1n	Rice 15 day old seedling*	rsl1n.pk016.p18
sdp4c	Soybean developing embryo (9-11 mm)	sdp4c.pk033.n11
sfl1	Soybean immature flower	sfl1.pk0013.f9
		sfl1.pk0046.e8
wle1n	Wheat leaf from 7 day	wle1n.pk0021.e6
	old etiolated seedling*
wlm4	Wheat seedlings 4 hours after	wlm4.pk0013.c12
	treatment with a fungicide**

cDNA libraries may be prepared by any one of many methods available. For example, the cDNAs may be introduced into plasmid vectors by first preparing the cDNA libraries in Uni-ZAP* XR vectors according to the manufacturer's protocol (Stratagene Cloning Systems, La Jolla, Calif.). The Uni-ZAP* XR libraries are converted into plasmid libraries according to the protocol provided by Stratagene. Upon conversion, cDNA inserts will be contained in the plasmid vector pBluescript. In addition, the cDNAs may be introduced directly into precut Bluescript II SK(+) vectors (Stratagene) using T4 DNA ligase (New England Biolabs), followed by transfection into DH10B cells according to the manufacturer's protocol (GIBCO BRL Products). Once the cDNA inserts are in plasmid vectors, plasmid DNAs are prepared from randomly picked bacterial colonies containing recombinant pBluescript plasmids, or the insert cDNA sequences are amplified via polymerase chain reaction using primers specific for vector sequences flanking the inserted cDNA sequences. Amplified insert DNAs or plasmid DNAs are sequenced in dye-primer sequencing reactions to generate partial cDNA sequences (expressed sequence tags or “ESTs”; see Adams et al., (1991) [0058] Science 252:1651). The resulting ESTs are analyzed using a Perkin Elmer Model 377 fluorescent sequencer.

Example 2

Identification of cDNA Clones

cDNA clones encoding aninoacyl-tRNA synthetases were identified by conducting BLAST (Basic Local Alignment Search Tool; Altschul et al. (1993) [0059] J. Mol. Biol. 215:403-410; see also www.ncbi.nlm.nih.gov/BLAST/) searches for similarity to sequences contained in the BLAST “nr” database (comprising all non-redundant GenBank CDS translations, sequences derived from the 3-dimensional structure Brookhaven Protein Data Bank, the last major release of the SWISS-PROT protein sequence database, EMBL, and DDBJ databases). The cDNA sequences obtained in Example 1 were analyzed for similarity to all publicly available DNA sequences contained in the “nr” database using the BLASTN algorithm provided by the National Center for Biotechnology Information (NCBI). The DNA sequences were translated in all reading frames and compared for similarity to all publicly available protein sequences contained in the “nr” database using the BLASTX algorithm (Gish and States (1993) Nature Genetics 3:266-272) provided by the NCBI. For convenience, the P-value (probability) of observing a match of a cDNA sequence to a sequence contained in the searched databases merely by chance as calculated by BLAST are reported herein as “pLog” values, which represent the negative of the logarithm of the reported P-value. Accordingly, the greater the pLog value, the greater the likelihood that the cDNA sequence and the BLAST “hit” represent homologous proteins.

Example 3

Characterization of cDNA Clones Encoding Aspartyl-tRNA Synthetase

The BLASTX search using the EST sequences from clones listed in Table 3 revealed similarity of the polypeptides encoded by the cDNAs to aspartyl-tRNA synthetase from Drosophila melanogaster (NCBI Identifier No. gi 4512034), Rattus norvegicus (NCBI Identifier No. gi 135099) and Homo sapiens (NCBI Identifier no. gi 4557513). Shown in Table 3 are the BLAST results for individual ESTs (“EST”), the sequences of the entire cDNA inserts comprising the indicated cDNA clones (“FIS”), or contigs assembled from two or more ESTs (“Contig”):

TABLE 3


BLAST Results for Sequences Encoding Polypeptides
Homologous to Drosophila melanogaster, Rattus norvegicus and
Homo sapiens Aspartyl-tRNA Synthetase

Clone	Status	BLAST pLog Score

p0094.cssth73r	FIS	134.00 (gi 4512034)
rl0n.pk0015.g11	FIS	51.15 (gi 135099)
sfl1.pk0046.e8	FIS	102.00 (gi 4557513)
wle1n.pk0021.e6	FIS	21.40 (gi 4557513)

The data in Table 4 represents a calculation of the percent identity of the amino acid sequences set forth in SEQ ID NOs: 2, 4, 6 and 8 and the Drosophila melanogaster, Rattus norvegicus and Homo sapiens aspartyl-tRNA synthetase sequences (SEQ ID NOs: 23, 24 and 25 respectively).

TABLE 4


Percent Identity of Amino Acid Sequences Deduced
From the Nucleotide Sequences of cDNA Clones Encoding
Polypeptides Homologous to Drosophila melanogaster, Rattus
norvegicus and Homo sapiens Aspartyl-tRNA Synthetase

SEQ ID NO.	Percent Identity to

2	51% (gi 4512034)
4	65% (gi 135099)
6	51% (gi 4557513)
8	52% (gi 4557513)

Sequence alignments and percent identity calculations were performed using the Megalign program of the LASARGENE bioinformatics computing suite (DNASTAR Inc., Madison, Wis.). Multiple alignment of the sequences was performed using the Clustal method of alignment (Higgins and Sharp (1989) [0062] CABIOS. 5:151 -153) with the default parameters (GAP PENALTY=10, GAP LENGTH PENALTY=10). Default parameters for pairwise alignments using the Clustal method were KTUPLE 1, GAP PENALTY=3, WINDOW=5 and DIAGONALS SAVED=5. Sequence alignments and BLAST scores and probabilities indicate that the nucleic acid fragments comprising the instant cDNA clones encode a substantial portion of an aspartyl-tRNA synthetase. These sequences represent the first corn, rice, soybean and wheat sequences encoding aspartyl-tRNA synthetase.

Example 4

Characterization of cDNA Clones Encoding Cysteinyl-tRNA Synthetase

The BLASTX search using the EST sequences from clones listed in Table 5 revealed similarity of the polypeptides encoded by the cDNAs to cysteinyl-tRNA synthetase from [0063] Haemophilus influenzae (NCBI Identifier No. gi 1174501) and Escherichia coli (NCBI Identifier No. gi 41203). Shown in Table 5 are the BLAST results for individual ESTs (“EST”), the sequences of the entire cDNA inserts comprising the indicated cDNA clones (“FIS”), or contigs assembled from two or more ESTs (“Contig”):

TABLE 5

BLAST Results for Sequences Encoding Polypeptides

Homologous to Haemophilus influenzae and

Escherichia coli Cysteinyl-tRNA Synthetase

Clone Status BLAST pLog Score

p0119.cmtmt52r FIS 104.00 (gi 1174501)

rsl1n.pk016.p18 FIS 108.00 (gi 41203)

sfl1.pk0013.f9 FIS 117.00 (gi 1174501)

The data in Table 6 represents a calculation of the percent identity of the amino acid sequences set forth in SEQ ID NOs: 10, 12 and 14 and the Haemophilus influenzae and Escherichia coli sequences (SEQ ID NOs: 26 and 27 respectively).

TABLE 6


Percent Identity of Amino Acid Sequences
Deduced From the Nucleotide Sequences of cDNA Clones
Encoding Polypeptides Homologous to Haemophilus influenzae
and Escherichia coli Cysteinyl-tRNA Synthetase

SEQ ID NO.	Percent Identity to

10	43% (gi 1174501)
12	44% (gi 41203)
14	44% (gi 1174501)

Sequence alignments and percent identity calculations were performed using the Megalign program of the LASARGENE bioinformatics computing suite (DNASTAR Inc., Madison, Wis.). Multiple alignment of the sequences was performed using the Clustal method of alignment (Higgins and Sharp (1989) [0065] CABIOS. 5:151-153) with the default parameters (GAP PENALTY=10, GAP LENGTH PENALTY=10). Default parameters for pairwise alignments using the Clustal method were KTUPLE 1, GAP PENALTY=3, WINDOW=5 and DIAGONALS SAVED=5. Sequence alignments and BLAST scores and probabilities indicate that the nucleic acid fragments comprising the instant cDNA clones encode a substantial portion of a cysteinyl-tRNA synthetase. These sequences represent the first corn, rice and soybean sequences encoding cysteinyl-tRNA synthetase.

Example 5

Characterization of cDNA Clones Encoding Tryptophanyl-tRNA Synthetase

The BLASTX search using the EST sequences from clones listed in Table 7 revealed similarity of the polypeptides encoded by the cDNAs to tryptophanyl-tRNA synthetase from Synechocystis sp. (NCBI Identifier No. gi 2501072). Shown in Table 7 are the BLAST results for individual ESTs (“EST”), the sequences of the entire cDNA inserts comprising the indicated cDNA clones (“FIS”), or contigs assembled from two or more ESTs (“Contig”): [0066]

TABLE 7

BLAST Results for Sequences Encoding Polypeptides

Homologous to Synechocystis sp. Tryptophanyl-tRNA Synthetase

BLAST pLog Score

Clone Status to (gi 2501072)

p0118.chsbl87r EST 104.00

sdp4c.pk033.n11 FIS 103.00

wlm4.pk0013.c12 FIS 43.22

The data in Table 8 represents a calculation of the percent identity of the amino acid sequences set forth in SEQ ID NOs: 16, 18 and 24 and the Synechocystis sp. sequence (SEQ ID NO: 28).

TABLE 8


Percent Identity of Amino Acid Sequences Deduced
From the Nucleotide Sequences of cDNA Clones Encoding
Polypeptides Homologous to Synechocystis sp.
Tryptophanyl-tRNA Synthetase

	Percent Identity to
SEQ ID NO.	(gi 2501072)

16	49%
18	50%
20	51%

Sequence alignments and percent identity calculations were performed using the Megalign program of the LASARGENE bioinformatics computing suite (DNASTAR Inc., Madison, Wis.). Multiple alignment of the sequences was performed using the Clustal method of alignment (Higgins and Sharp (1989) [0068] CABIOS. 5:151-153) with the default parameters (GAP PENALTY=10, GAP LENGTH PENALTY=10). Default parameters for pairwise alignments using the Clustal method were KTUPLE 1, GAP PENALTY=3, WINDOW=5 and DIAGONALS SAVED=5. Sequence alignments and BLAST scores and probabilities indicate that the nucleic acid fragments comprising the instant cDNA clones encode a substantial portion of a tryptophanyl-tRNA synthetase. These sequences represent the first corn, soybean and wheat sequences encoding tryptophanyl-tRNA synthetase.

Example 6

Characterization of cDNA Clones Encoding Tyrosyl-tRNA Synthetase

The BLASTX search using the EST sequence from the clone listed in Table 9 revealed similarity of the polypeptide encoded by the cDNA to tyrosyl-tRNA synthetase from [0069] Bacillus caldotenax (NCBI Identifier No. gi 135196). Shown in Table 9 are the BLAST results for the sequence of the entire cDNA insert comprising the indicated cDNA clone (“FIS”):

TABLE 9

BLAST Results for Sequence Encoding Polypeptide Homologous

to Bacillus caldotenax Tyrosyl-tRNA Synthetase

BLAST pLog Score to

Clone Status (gi 135196)

cs1.pk0035.d2 FIS 62.52
The data in Table 10 represents a calculation of the percent identity of the amino acid sequence set forth in SEQ ID NO:22 the [0070] Bacillus caldotenax sequence (SEQ ID NO: 29).

TABLE 10

Percent Identity of Amino Acid Sequence Deduced From the

Nucleotide Sequence of cDNA Clone Encoding Polypeptide

Homologous to Bacillus caldotenax Tyrosyl-tRNA Synthetase

Percent Identity to

SEQ ID NO. (gi 135196)

22 52%
Sequence alignments and percent identity calculations were performed using the Megalign program of the LASARGENE bioinformatics computing suite (DNASTAR Inc., Madison, Wis.). Multiple alignment of the sequences was performed using the Clustal method of alignment (Higgins and Sharp (1989) [0071] CABIOS. 5:151-153) with the default parameters (GAP PENALTY=10, GAP LENGTH PENALTY=10). Default parameters for pairwise alignments using the Clustal method were KTUPLE 1, GAP PENALTY=3, WINDOW=5 and DIAGONALS SAVED=5. Sequence alignments and BLAST scores and probabilities indicate that the nucleic acid fragments comprising the instant cDNA clones encode a substantial portion of a tyrosyl-tRNA synthetase. This sequence represent the first corn sequence encoding tyrosyl-tRNA synthetase.

Example 7

Expression of Chimeric Genes in Monocot Cells

A chimeric gene comprising a cDNA encoding the instant polypeptides in sense orientation with respect to the maize 27 kD zein promoter that is located 5′ to the cDNA fragment, and the 10 kD zein 3′ end that is located 3′ to the cDNA fragment, can be constructed. The cDNA fragment of this gene may be generated by polymerase chain reaction (PCR) of the cDNA clone using appropriate oligonucleotide primers. Cloning sites (NcoI or SmaI) can be incorporated into the oligonucleotides to provide proper orientation of the DNA fragment when inserted into the digested vector pML103 as described below. Amplification is then performed in a standard PCR. The amplified DNA is then digested with restriction enzymes NcoI and SmaI and fractionated on an agarose gel. The appropriate band can be isolated from the gel and combined with a 4.9 kb NcoI-SmaI fragment of the plasmid pML103. Plasmid pML103 has been deposited under the terms of the Budapest Treaty at ATCC (American Type Culture Collection, 10801 University Blvd., Manassas, Va. 20110-2209), and bears accession number ATCC 97366. The DNA segment from pML103 contains a 1.05 kb SalI-NcoI promoter fragment of the maize 27 kD zein gene and a 0.96 kb SmaI-SalI fragment from the 3′ end of the maize 10 kD zein gene in the vector pGem9Zf(+) (Promega). Vector and insert DNA can be ligated at 15° C. overnight, essentially as described (Maniatis). The ligated DNA may then be used to transform [0072] E. coli XL1-Blue (Epicurian Coli XL-1 Blue™; Stratagene). Bacterial transformants can be screened by restriction enzyme digestion of plasmid DNA and limited nucleotide sequence analysis using the dideoxy chain termination method (Sequenase™ DNA Sequencing Kit; U.S. Biochemical). The resulting plasmid construct would comprise a chimeric gene encoding, in the 5′ to 3′ direction, the maize 27 kD zein promoter, a cDNA fragment encoding the instant polypeptides, and the 10 kD zein 3′ region.
The chimeric gene described above can then be introduced into corn cells by the following procedure. Immature corn embryos can be dissected from developing caryopses derived from crosses of the inbred corn lines H99 and LH132. The embryos are isolated 10 to 11 days after pollination when they are 1.0 to 1.5 mm long. The embryos are then placed with the axis-side facing down and in contact with agarose-solidified N6 medium (Chu et al. (1975) [0073] Sci. Sin. Peking 18:659-668). The embryos are kept in the dark at 27° C. Friable embryogenic callus consisting of undifferentiated masses of cells with somatic proembryoids and embryoids borne on suspensor structures proliferates from the scutellum of these immature embryos. The embryogenic callus isolated from the primary explant can be cultured on N6 medium and sub-cultured on this medium every 2 to 3 weeks.
The plasmid, p35S/Ac (obtained from Dr. Peter Eckes, Hoechst Ag, Frankfurt, Germany) may be used in transformation experiments in order to provide for a selectable marker. This plasmid contains the Pat gene (see European Patent Publication 0 242 236) which encodes phosphinothricin acetyl transferase (PAT). The enzyme PAT confers resistance to herbicidal glutamine synthetase inhibitors such as phosphinothricin. The pat gene in p35 S/Ac is under the control of the 35S promoter from Cauliflower Mosaic Virus (Odell et al. (1985) [0074] Nature 313:810-812) and the 3′ region of the nopaline synthase gene from the T-DNA of the Ti plasmid of Agrobacterium tumefaciens.
The particle bombardment method (Klein et al. (1987) [0075] Nature 327:70-73) may be used to transfer genes to the callus culture cells. According to this method, gold particles (1 μm in diameter) are coated with DNA using the following technique. Ten μg of plasmid DNAs are added to 50 μL of a suspension of gold particles (60 mg per mL). Calcium chloride (50 μL of a 2.5 M solution) and spermidine free base (20 μL of a 1.0 M solution) are added to the particles. The suspension is vortexed during the addition of these solutions. After 10 minutes, the tubes are briefly centrifuged (5 sec at 15,000 rpm) and the supernatant removed. The particles are resuspended in 200 μL of absolute ethanol, centrifuged again and the supernatant removed. The ethanol rinse is performed again and the particles resuspended in a final volume of 30 μL of ethanol. An aliquot (5 μL) of the DNA-coated gold particles can be placed in the center of a Kapton™ flying disc (Bio-Rad Labs). The particles are then accelerated into the corn tissue with a Biolistic™ PDS-1000/He (Bio-Rad Instruments, Hercules Calif.), using a helium pressure of 1000 psi, a gap distance of 0.5 cm and a flying distance of 1.0 cm.
For bombardment, the embryogenic tissue is placed on filter paper over agarose-solidified N6 medium. The tissue is arranged as a thin lawn and covered a circular area of about 5 cm in diameter. The petri dish containing the tissue can be placed in the chamber of the PDS-1000/He approximately 8 cm from the stopping screen. The air in the chamber is then evacuated to a vacuum of 28 inches of Hg. The macrocarrier is accelerated with a helium shock wave using a rupture membrane that bursts when the He pressure in the shock tube reaches 1000 psi. [0076]
Seven days after bombardment the tissue can be transferred to N6 medium that contains gluphosinate (2 mg per liter) and lacks casein or proline. The tissue continues to grow slowly on this medium. After an additional 2 weeks the tissue can be transferred to fresh N6 medium containing gluphosinate. After 6 weeks, areas of about 1 cm in diameter of actively growing callus can be identified on some of the plates containing the glufosinate-supplemented medium. These calli may continue to grow when sub-cultured on the selective medium. [0077]
Plants can be regenerated from the transgenic callus by first transferring clusters of tissue to N6 medium supplemented with 0.2 mg per liter of 2,4-D. After two weeks the tissue can be transferred to regeneration medium (Fromm et al. (1990) [0078] Bio/Technology 8:833-839).

Example 8

Expression of Chimeric Genes in Dicot Cells

A seed-specific expression cassette composed of the promoter and transcription terminator from the gene encoding the β subunit of the seed storage protein phaseolin from the bean [0079] Phaseolus vulgaris (Doyle et al. (1986) J. Biol. Chem. 261:9228-9238) can be used for expression of the instant polypeptides in transformed soybean. The phaseolin cassette includes about 500 nucleotides upstream (5′ ) from the translation initiation codon and about 1650 nucleotides downstream (3′ ) from the translation stop codon of phaseolin. Between the 5′ and 3′ regions are the unique restriction endonuclease sites Nco I (which includes the ATG translation initiation codon), Sma I, Kpn I and Xba I. The entire cassette is flanked by Hind III sites.
The cDNA fragment of this gene may be generated by polymerase chain reaction (PCR) of the cDNA clone using appropriate oligonucleotide primers. Cloning sites can be incorporated into the oligonucleotides to provide proper orientation of the DNA fragment when inserted into the expression vector. Amplification is then performed as described above, and the isolated fragment is inserted into a pUC18 vector carrying the seed expression cassette. [0080]
Soybean embroys may then be transformed with the expression vector comprising sequences encoding the instant polypeptides. To induce somatic embryos, cotyledons, 3-5 mm in length dissected from surface sterilized, immature seeds of the soybean cultivar A2872, can be cultured in the light or dark at 26° C. on an appropriate agar medium for 6-10 weeks. Somatic embryos which produce secondary embryos are then excised and placed into a suitable liquid medium. After repeated selection for clusters of somatic embryos which multiplied as early, globular staged embryos, the suspensions are maintained as described below. [0081]
Soybean embryogenic suspension cultures can maintained in 35 mL liquid media on a rotary shaker, 150 rpm, at 26° C. with florescent lights on a 16:8 hour day/night schedule. Cultures are subcultured every two weeks by inoculating approximately 35 mg of tissue into 35 mL of liquid medium. [0082]
Soybean embryogenic suspension cultures may then be transformed by the method of particle gun bombardment (Klein et al. (1987) [0083] Nature (London) 327:70, U.S. Pat. No. 4,945,050). A DuPont Biolistic™ PDS 1000/HE instrument (helium retrofit) can be used for these transformations.
A selectable marker gene which can be used to facilitate soybean transformation is a chimeric gene composed of the 35S promoter from Cauliflower Mosaic Virus (Odell et al. (1985) [0084] Nature 313:810-812), the hygromycin phosphotransferase gene from plasmid pJR225 (from E. coli; Gritz et al. (1983) Gene 25:179-188) and the 3′ region of the nopaline synthase gene from the T-DNA of the Ti plasmid of Agrobacterium tumefaciens. The seed expression cassette comprising the phaseolin 5′ region, the fragment encoding the instant polypeptides and the phaseolin 3′ region can be isolated as a restriction fragment. This fragment can then be inserted into a unique restriction site of the vector carrying the marker gene.
To 50 μL of a 60 mg/mL 1 μm gold particle suspension is added (in order): 5 μL DNA (1 μg/μL), 20 μl spermidine (0.1 M), and 50 μL CaCl[0085] ₂(2.5 M). The particle preparation is then agitated for three minutes, spun in a microfuge for 10 seconds and the supernatant removed. The DNA-coated particles are then washed once in 400 μL 70% ethanol and resuspended in 40 μL of anhydrous ethanol. The DNA/particle suspension can be sonicated three times for one second each. Five μL of the DNA-coated gold particles are then loaded on each macro carrier disk.
Approximately 300-400 mg of a two-week-old suspension culture is placed in an empty 60×15 mm petri dish and the residual liquid removed from the tissue with a pipette. For each transformation experiment, approximately 5-10 plates of tissue are normally bombarded. Membrane rupture pressure is set at 1100 psi and the chamber is evacuated to a vacuum of 28 inches mercury. The tissue is placed approximately 3.5 inches away from the retaining screen and bombarded three times. Following bombardment, the tissue can be divided in half and placed back into liquid and cultured as described above. [0086]
Five to seven days post bombardment, the liquid media may be exchanged with fresh media, and eleven to twelve days post bombardment with fresh media containing 50 mg/mL hygromycin. This selective media can be refreshed weekly. Seven to eight weeks post bombardment, green, transformed tissue may be observed growing from untransformed, necrotic embryogenic clusters. Isolated green tissue is removed and inoculated into individual flasks to generate new, clonally propagated, transformed embryogenic suspension cultures. Each new line may be treated as an independent transformation event. These suspensions can then be subcultured and maintained as clusters of immature embryos or regenerated into whole plants by maturation and germination of individual somatic embryos. [0087]

Example 9

Expression of Chimeric Genes in Microbial Cells

The cDNAs' encoding the instant polypeptides can be inserted into the T7 [0088] E. coli expression vector pBT430. This vector is a derivative of pET-3a (Rosenberg et al. (1987) Gene 56:125-135) which employs the bacteriophage T7 RNA polymerase/T7 promoter system. Plasmid pBT430 was constructed by first destroying the EcoR I and Hind III sites in pET-3a at their original positions. An oligonucleotide adaptor containing EcoR I and Hind III sites was inserted at the BamH I site of pET-3a. This created pET-3aM with additional unique cloning sites for insertion of genes into the expression vector. Then, the Nde I site at the position of translation initiation was converted to an Nco I site using oligonucleotide-directed mutagenesis. The DNA sequence of pET-3aM in this region, 5′-CATATGG, was converted to 5′-CCCATGG in pBT 430.
Plasmid DNA containing a cDNA may be appropriately digested to release a nucleic acid fragment encoding the protein. This fragment may then be purified on a 1% NuSieve GTG™ low melting agarose gel (FMC). Buffer and agarose contain 10 μg/ml ethidium bromide for visualization of the DNA fragment. The fragment can then be purified from the agarose gel by digestion with GELase™ (Epicentre Technologies) according to the manufacturer's instructions, ethanol precipitated, dried and resuspended in 20 μL of water. Appropriate oligonucleotide adapters may be ligated to the fragment using T4 DNA ligase (New England Biolabs, Beverly, Mass.). The fragment containing the ligated adapters can be purified from the excess adapters using low melting agarose as described above. The vector pBT430 is digested, dephosphorylated with alkaline phosphatase (NEB) and deproteinized with phenol/chloroform as described above. The prepared vector pBT430 and fragment can then be ligated at 16° C. for 15 hours followed by transformation into DH5 electrocompetent cells (GIBCO BRL). Transformants can be selected on agar plates containing LB media and 100 μg/mL ampicillin. Transformants containing the gene encoding the instant polypeptides are then screened for the correct orientation with respect to the T7 promoter by restriction enzyme analysis. [0089]
For high level expression, a plasmid clone with the cDNA insert in the correct orientation relative to the T7 promoter can be transformed into [0090] E. coli strain BL21 (DE3) (Studier et al. (1986) J. Mol. Biol. 189:113-130). Cultures are grown in LB medium containing ampicillin (100 mg/L) at 25° C. At an optical density at 600 nm of approximately 1, IPTG (isopropylthio-β-galactoside, the inducer) can be added to a final concentration of 0.4 mM and incubation can be continued for 3 h at 25°. Cells are then harvested by centrifugation and re-suspended in 50 μL of 50 mM Tris-HCl at pH 8.0 containing 0.1 mM DTT and 0.2 mM phenyl methylsulfonyl fluoride. A small amount of 1 mm glass beads can be added and the mixture sonicated 3 times for about 5 seconds each time with a microprobe sonicator. The mixture is centrifuged and the protein concentration of the supernatant determined. One μg of protein from the soluble fraction of the culture can be separated by SDS-polyacrylamide gel electrophoresis. Gels can be observed for protein bands migrating at the expected molecular weight.

Example 10

Evaluating Compounds for Their Ability to Inhibit the Activity of Aminoacyl-tRNA Synthetase

The polypeptides described herein may be produced using any number of methods known to those skilled in the art. Such methods include, but are not limited to, expression in bacteria as described in Example 9, or expression in eukaryotic cell culture, in planta, and using viral expression systems in suitably infected organisms or cell lines. The instant polypeptides may be expressed either as mature forms of the proteins as observed in vivo or as fusion proteins by covalent attachment to a variety of enzymes, proteins or affinity tags. Common fusion protein partners include glutathione S-transferase (“GST”), thioredoxin (“Trx”), maltose binding protein, and C- and/or N-terminal hexahistidine polypeptide (“(His)[0091] ₆”). The fusion proteins may be engineered with a protease recognition site at the fusion point so that fusion partners can be separated by protease digestion to yield intact mature enzyme. Examples of such proteases include thrombin, enterokinase and factor Xa. However, any protease can be used which specifically cleaves the peptide connecting the fusion protein and the enzyme.
Purification of the instant polypeptides, if desired, may utilize any number of separation technologies familiar to those skilled in the art of protein purification. Examples of such methods include, but are not limited to, homogenization, filtration, centrifugation, heat denaturation, ammonium sulfate precipitation, desalting, pH precipitation, ion exchange chromatography, hydrophobic interaction chromatography and affinity chromatography, wherein the affinity ligand represents a substrate, substrate analog or inhibitor. When the instant polypeptides are expressed as fusion proteins, the purification protocol may include the use of an affinity resin which is specific for the fusion protein tag attached to the expressed enzyme or an affinity resin containing ligands which are specific for the enzyme. For example, the instant polypeptides may be expressed as a fusion protein coupled to the C-terminus of thioredoxin. In addition, a (His)[0092] ₆peptide may be engineered into the N-terminus of the fused thioredoxin moiety to afford additional opportunities for affinity purification. Other suitable affinity resins could be synthesized by linking the appropriate ligands to any suitable resin such as Sepharose-4B. In an alternate embodiment, a thioredoxin fusion protein may be eluted using dithiothreitol; however, elution may be accomplished using other reagents which interact to displace the thioredoxin from the resin. These reagents include β-mercaptoethanol or other reduced thiol. The eluted fusion protein may be subjected to further purification by traditional means as stated above, if desired. Proteolytic cleavage of the thioredoxin fusion protein and the enzyme may be accomplished after the fusion protein is purified or while the protein is still bound to the ThioBond™ affinity resin or other resin.
Crude, partially purified or purified enzyme, either alone or as a fusion protein, may be utilized in assays for the evaluation of compounds for their ability to inhibit enzymatic activation of the instant polypeptides disclosed herein. Assays may be conducted under well known experimental conditions which permit optimal enzymatic activity. For example, assays for aminoacyl-tRNA synthetases are presented by Zon et al. (1988) [0093] Phytochemistry 27(3):711-714 and Heacock et al. (1996) Bioorganic Chemistry 24(3):273-289.
1 29 1 1948 DNA Zea mays 1 cgcacgatag ccgccgccgt cgaccagagc actcccccgt cgtcgccacg atgtcgtctg 60 agcctccacc cgcctcctct gccgccgccg gagaggaact cgctgctgac ctttccgccg 120 ctaccctcag caagaagcag cagaagaagg acgcgaggaa ggcggagaag gcagagcagc 180 gccagcgtca gcagcagcag cagcagcagc cggcggacgc cgaggacccg ttcgcggcca 240 actacggcga ggtccccgtc gaggagatcc agtcaaaggc catctccggc cgctcgtggt 300 cccatgtcgg cgacctcgac gactccgctg cgggccgctc cgtgcttatc cgcggagccg 360 cgcaggccat ccgtccggtc agcaagaaga tggctttcgt cgtgctgcgc cagagtatg 420 gcaccgtgca gtgcgtgctc gtcgccagcg ccgacgccgg cgtcagcacg cagatggtc 480 gcttcgccac cgccctcagc aaggagtcca tcgtcgacgt tgagggcgtc gtctccccc 540 caaaggagcc cctcaaggcc accacacagc aggttgagat ccaagtgagg aagatcatt 600 gcatcaatag ggctattccg acccttccaa ttaaccttga agatgcggct cggaggagg 660 cagattttga gaaggctgaa ttggctggag aaaagcttgt tcgcgttggc caagtaccc 720 gcttgaacta cagagctatt gatctacgaa caccctcgaa tcaagccata ttcggatcc 780 agtgtcaagt tgaaaacaaa tttagagatt ttttgttgtc gaagaacttt gtgggatcc 840 acaccccaaa attgatttct ggatctagtg aagggggtgc ggctgtattc agcttctgt 900 acaatggtca acctgcttgt ttggcacaat cccctcagtt atacaagcaa tggctatct 960 ctggtggttt tgagcgagta tttgaggtcg gccctgtgtt tagagcagaa aattcaaaca 1020 cacacaggca tctatgtgag ttcgttggtc ttgatgctga aatggagatt aaggagcatt 1080 attttgaggt ctgtgacatt atagatggct tattcgtatc aatatttaaa cacttgtctg 1140 aaaactgcaa gaaagaactc gaatcaataa acaggcagta tccatttgaa cctctgaagt 1200 atctagacaa aacctttaag ctcacttatg aagaaggaat tcaaatgttg aaggaagccg 1260 gaacagaaat cgagcctatg ggtgacctca ataccgaagc tgagaaaaaa cttggtcggc 1320 ttgtcaggga aaagtatgac acagattttt tcatcctgta tcggtatcct ttggctgtac 1380 gtccgttcta caccatgcct tgttatgaca acccagcgta caccaattct tttgatgtct 1440 tcattcgagg cgaggagata atatctggag cacaaaggat acacactcct gagctgctgg 1500 ccaagcgcgc gacagagtgt ggaatcgacg tgagcactat ctcggcctac attgaatcct 1560 tcagctatgg cgtgccgcca cacggcggtt tcggggtggg tttggagagg gtggtgatgc 1620 tgttctgtgc cctgaacaac atcaggaaga cctccctgtt cccgcgcgac ccgcagaggc 1680 tcgtgccgta agtttctgat tccaagcctg agtcttcgag tggtctacgg agcagatccg 1740 atgttgttac catcagagtt gacttgcaat cttagctcct gaacctggcg gttaccgtgg 1800 atcagagttc ctgttgaatt tcacaaaagc ctacttgttc ctaatagatt gctgcaacca 1860 acaatattac gaccctttcg ggcttttctt cccgcctcac gtgttattct ggtctatact 1920 tgtttttaag tgcaagtatt gctcagtt 1948 2 546 PRT Zea mays 2 Met Ser Ser Glu Pro Pro Pro Ala Ser Ser Ala Ala Ala Gly Glu Glu 1 5 10 15 Leu Ala Ala Asp Leu Ser Ala Ala Thr Leu Ser Lys Lys Gln Gln Lys 20 25 30 Lys Asp Ala Arg Lys Ala Glu Lys Ala Glu Gln Arg Gln Arg Gln Gln 35 40 45 Gln Gln Gln Gln Gln Pro Ala Asp Ala Glu Asp Pro Phe Ala Ala Asn 50 55 60 Tyr Gly Glu Val Pro Val Glu Glu Ile Gln Ser Lys Ala Ile Ser Gly 65 70 75 80 Arg Ser Trp Ser His Val Gly Asp Leu Asp Asp Ser Ala Ala Gly Arg 85 90 95 Ser Val Leu Ile Arg Gly Ala Ala Gln Ala Ile Arg Pro Val Ser Lys 100 105 110 Lys Met Ala Phe Val Val Leu Arg Gln Ser Met Ser Thr Val Gln Cys 115 120 125 Val Leu Val Ala Ser Ala Asp Ala Gly Val Ser Thr Gln Met Val Arg 130 135 140 Phe Ala Thr Ala Leu Ser Lys Glu Ser Ile Val Asp Val Glu Gly Val 145 150 155 160 Val Ser Leu Pro Lys Glu Pro Leu Lys Ala Thr Thr Gln Gln Val Glu 165 170 175 Ile Gln Val Arg Lys Ile Tyr Cys Ile Asn Arg Ala Ile Pro Thr Leu 180 185 190 Pro Ile Asn Leu Glu Asp Ala Ala Arg Ser Glu Ala Asp Phe Glu Lys 195 200 205 Ala Glu Leu Ala Gly Glu Lys Leu Val Arg Val Gly Gln Asp Thr Arg 210 215 220 Leu Asn Tyr Arg Ala Ile Asp Leu Arg Thr Pro Ser Asn Gln Ala Ile 225 230 235 240 Phe Arg Ile Gln Cys Gln Val Glu Asn Lys Phe Arg Asp Phe Leu Leu 245 250 255 Ser Lys Asn Phe Val Gly Ile His Thr Pro Lys Leu Ile Ser Gly Ser 260 265 270 Ser Glu Gly Gly Ala Ala Val Phe Lys Leu Leu Tyr Asn Gly Gln Pro 275 280 285 Ala Cys Leu Ala Gln Ser Pro Gln Leu Tyr Lys Gln Met Ala Ile Ser 290 295 300 Gly Gly Phe Glu Arg Val Phe Glu Val Gly Pro Val Phe Arg Ala Glu 305 310 315 320 Asn Ser Asn Thr His Arg His Leu Cys Glu Phe Val Gly Leu Asp Ala 325 330 335 Glu Met Glu Ile Lys Glu His Tyr Phe Glu Val Cys Asp Ile Ile Asp 340 345 350 Gly Leu Phe Val Ser Ile Phe Lys His Leu Ser Glu Asn Cys Lys Lys 355 360 365 Glu Leu Glu Ser Ile Asn Arg Gln Tyr Pro Phe Glu Pro Leu Lys Tyr 370 375 380 Leu Asp Lys Thr Phe Lys Leu Thr Tyr Glu Glu Gly Ile Gln Met Leu 385 390 395 400 Lys Glu Ala Gly Thr Glu Ile Glu Pro Met Gly Asp Leu Asn Thr Glu 405 410 415 Ala Glu Lys Lys Leu Gly Arg Leu Val Arg Glu Lys Tyr Asp Thr Asp 420 425 430 Phe Phe Ile Leu Tyr Arg Tyr Pro Leu Ala Val Arg Pro Phe Tyr Thr 435 440 445 Met Pro Cys Tyr Asp Asn Pro Ala Tyr Thr Asn Ser Phe Asp Val Phe 450 455 460 Ile Arg Gly Glu Glu Ile Ile Ser Gly Ala Gln Arg Ile His Thr Pro 465 470 475 480 Glu Leu Leu Ala Lys Arg Ala Thr Glu Cys Gly Ile Asp Val Ser Thr 485 490 495 Ile Ser Ala Tyr Ile Glu Ser Phe Ser Tyr Gly Val Pro Pro His Gly 500 505 510 Gly Phe Gly Val Gly Leu Glu Arg Val Val Met Leu Phe Cys Ala Leu 515 520 525 Asn Asn Ile Arg Lys Thr Ser Leu Phe Pro Arg Asp Pro Gln Arg Leu 530 535 540 Val Pro 545 3 730 DNA Oryza sativa 3 gcacgagctt acacggcacg agcttacagg aattcaaatg ctgaaggaag ctggaacaga 60 aatcgaaccc atgggtgacc tcaacactga agctgagaaa aaactaggcc ggcttgttaa 120 ggagaagtat ggaacagaat ttttcatcct ctatcggtat cctttggctg tgcgtccctt 180 ctacaccatg ccttgttatg acaacccagc ttacagtaac tcttttgatg tctttattcg 240 aggagaggaa ataatatctg gagcacaaag aatacattta ccagagctat tgacgaaacg 300 tgcaacagag tgtggaattg atgcgagtac tatttcatca tatatcgaat cgttcagcta 360 tggtgcacct cctcatggtg gttttggtgt cggcctggag agggtggtaa tgctgttctg 420 cgccctaaac aacatcagga agacatcact tttccctcgc gatccacaaa ggctggtgcc 480 ataatttgct ttttttccca agagcaaggt ttggactcag tacggactgg gcagttttcc 540 tcggctggtt tttttacctg gacattattt tcgtatttat taatgtgctg tactgcaaaa 600 gctgctcctt tccacaacat ttggaatagt tgccgataca tttggaatag ggctcaacgt 660 tggcgttgtg atttcgttga tgatcccgct attcgtaaca aaaaaaaaaa aaaaaaaaaa 720 aaaaaaaaaa 730 4 148 PRT Oryza sativa 4 Met Leu Lys Glu Ala Gly Thr Glu Ile Glu Pro Met Gly Asp Leu Asn 1 5 10 15 Thr Glu Ala Glu Lys Lys Leu Gly Arg Leu Val Lys Glu Lys Tyr Gly 20 25 30 Thr Glu Phe Phe Ile Leu Tyr Arg Tyr Pro Leu Ala Val Arg Pro Phe 35 40 45 Tyr Thr Met Pro Cys Tyr Asp Asn Pro Ala Tyr Ser Asn Ser Phe Asp 50 55 60 Val Phe Ile Arg Gly Glu Glu Ile Ile Ser Gly Ala Gln Arg Ile His 65 70 75 80 Leu Pro Glu Leu Leu Thr Lys Arg Ala Thr Glu Cys Gly Ile Asp Ala 85 90 95 Ser Thr Ile Ser Ser Tyr Ile Glu Ser Phe Ser Tyr Gly Ala Pro Pro 100 105 110 His Gly Gly Phe Gly Val Gly Leu Glu Arg Val Val Met Leu Phe Cys 115 120 125 Ala Leu Asn Asn Ile Arg Lys Thr Ser Leu Phe Pro Arg Asp Pro Gln 130 135 140 Arg Leu Val Pro 145 5 1109 DNA Glycine max 5 gcacgaggtc atcagagaga atggcttcac cgttcaatgc ttggtgcagg cgcaggccga 60 tacggtgagc ccgcagatgg tgaagttcgc cgctgcactc agccgcgagt ccatcgtcga 120 tgtcgaaggc gttgtttcga tcccctccgc tcccatcaaa ggcgccacac aacaggtgga 180 aattcaagtg aggaagttgt attgtgtcag tagggctgta cctactctgc ctattaatct 240 tgaggatgct gctcgaagtg aagttgaaat cgagacggct cttcaggctg gtgagcaact 300 tgttcgtgtt aatcaggata cacgtctgaa ctttagggtg cttgatgtgc gaacgccagc 360 taatcaaggg attttccgca ttcagtctca agttggaaat gcgtttagac aattcttatt 420 atctgaaggt ttttgtgaaa tccacactcc aaagttgata gctggatcta gtgagggagg 480 agctgctgtt tttagactgg actacaaagg tcaacctgca tgcctggccc agtcacctca 540 gcttcacaag caaatgtcta tttgtggaga ttttggccgt gtttttgaga ttggtcctgt 600 gtttagagca gaagattcct acactcacag gcatctgtgt gagtttacag gtcttgatgt 660 tgaaatggag attaagaagc attactttga ggttatggat atagtcgata gattgtttgt 720 cgcaatgttt gacagtttga accagaattg taagaaggat ctggaagctg tcgggtctca 780 gtatccattt gaacctttga agtatctgcg gacgacacta cggcttacat atgaagaagg 840 gattcagatg ctcaaggatg ttggagtaga aattgaacct tatggtgact tgaatactga 900 agcggaaagg aaattgggtc agctagtctc agagaaatat ggcacagagt tctatatcct 960 tcaccggtac cctttggctg taaggccatt ctatacaatg ccttgctacg acaatcctgc 1020 atacagcaac tcgtttgatg tctttattcg aggtgaggag ataatttcag gagctcagcg 1080 tgttcatgtg ccagaatttt tggaacaag 1109 6 369 PRT Glycine max 6 His Glu Val Ile Arg Glu Asn Gly Phe Thr Val Gln Cys Leu Val Gln 1 5 10 15 Ala Gln Ala Asp Thr Val Ser Pro Gln Met Val Lys Phe Ala Ala Ala 20 25 30 Leu Ser Arg Glu Ser Ile Val Asp Val Glu Gly Val Val Ser Ile Pro 35 40 45 Ser Ala Pro Ile Lys Gly Ala Thr Gln Gln Val Glu Ile Gln Val Arg 50 55 60 Lys Leu Tyr Cys Val Ser Arg Ala Val Pro Thr Leu Pro Ile Asn Leu 65 70 75 80 Glu Asp Ala Ala Arg Ser Glu Val Glu Ile Glu Thr Ala Leu Gln Ala 85 90 95 Gly Glu Gln Leu Val Arg Val Asn Gln Asp Thr Arg Leu Asn Phe Arg 100 105 110 Val Leu Asp Val Arg Thr Pro Ala Asn Gln Gly Ile Phe Arg Ile Gln 115 120 125 Ser Gln Val Gly Asn Ala Phe Arg Gln Phe Leu Leu Ser Glu Gly Phe 130 135 140 Cys Glu Ile His Thr Pro Lys Leu Ile Ala Gly Ser Ser Glu Gly Gly 145 150 155 160 Ala Ala Val Phe Arg Leu Asp Tyr Lys Gly Gln Pro Ala Cys Leu Ala 165 170 175 Gln Ser Pro Gln Leu His Lys Gln Met Ser Ile Cys Gly Asp Phe Gly 180 185 190 Arg Val Phe Glu Ile Gly Pro Val Phe Arg Ala Glu Asp Ser Tyr Thr 195 200 205 His Arg His Leu Cys Glu Phe Thr Gly Leu Asp Val Glu Met Glu Ile 210 215 220 Lys Lys His Tyr Phe Glu Val Met Asp Ile Val Asp Arg Leu Phe Val 225 230 235 240 Ala Met Phe Asp Ser Leu Asn Gln Asn Cys Lys Lys Asp Leu Glu Ala 245 250 255 Val Gly Ser Gln Tyr Pro Phe Glu Pro Leu Lys Tyr Leu Arg Thr Thr 260 265 270 Leu Arg Leu Thr Tyr Glu Glu Gly Ile Gln Met Leu Lys Asp Val Gly 275 280 285 Val Glu Ile Glu Pro Tyr Gly Asp Leu Asn Thr Glu Ala Glu Arg Lys 290 295 300 Leu Gly Gln Leu Val Ser Glu Lys Tyr Gly Thr Glu Phe Tyr Ile Leu 305 310 315 320 His Arg Tyr Pro Leu Ala Val Arg Pro Phe Tyr Thr Met Pro Cys Tyr 325 330 335 Asp Asn Pro Ala Tyr Ser Asn Ser Phe Asp Val Phe Ile Arg Gly Glu 340 345 350 Glu Ile Ile Ser Gly Ala Gln Arg Val His Val Pro Glu Phe Leu Glu 355 360 365 Gln 7 836 DNA Triticum aestivum 7 tacacatgca gactttcagt gagtttttgt tctcggactt gggatccaca gtccaaagtt 60 gattggtgga tcaagtgaac ttggtgcatc tccattcaag ctggcgtaca attaccaacc 120 tgcttattta gcgcagtctc tacaatcata caagcaaatg agcatctgtg gtggctttgg 180 gcgcgtgttt gaggctggtc cggtatttag atcagaaaaa tcaaacactc acaggcatct 240 atgtgagttt attgggttgg atgcagaaat ggagattaag gagcactact ttgaggtttg 300 tgatatcata gattgctaat tgtagcaata ttcaaacacc caaatgaaaa ttgtcagaag 360 gaactcgaga caataaatag gcagtatcca tttgaacctc tgaagtacct agagaaaacg 420 ttgaagctaa cgtacgagga agggattaaa atgctcaagg tttcattctg gaatcctcta 480 ggcagggtgc ttgcaatccc ctacatctcg gctgcaacaa aaaagaccca acgaggctgt 540 tgtttcaagc tcagaccctc ttcattgcac gcggtgctag aaggagaact gggttgtggt 600 gctgttgctg gtcgttttcc tttttacttt tgcactttgg ccgtcataaa cgatacatgc 660 ttgctccctg gatggatctc tttctctccc tggatctttt aaacaggtgt tgtgattaaa 720 attgtgataa atcagtgttc atcactaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 780 aatctcgagg gggggcccgg tactgttcac cgcgtggcgc cgggctagag actagt 836 8 98 PRT Triticum aestivum 8 Val Phe Val Leu Gly Leu Gly Ile His Ser Pro Lys Leu Ile Gly Gly 1 5 10 15 Ser Ser Glu Leu Gly Ala Ser Pro Phe Lys Leu Ala Tyr Asn Tyr Gln 20 25 30 Pro Ala Tyr Leu Ala Gln Ser Leu Gln Ser Tyr Lys Gln Met Ser Ile 35 40 45 Cys Gly Gly Phe Gly Arg Val Phe Glu Ala Gly Pro Val Phe Arg Ser 50 55 60 Glu Lys Ser Asn Thr His Arg His Leu Cys Glu Phe Ile Gly Leu Asp 65 70 75 80 Ala Glu Met Glu Ile Lys Glu His Tyr Phe Glu Val Cys Asp Ile Ile 85 90 95 Asp Cys 9 2085 DNA Zea mays 9 ggaaaccgtg tttcgacggg ccgcagtggg cagtggcttg gcccatcgaa cccacttgcc 60 actcacttcc acctgaactt tgccctgcct tctctcgacg actcccctgt ccccgccgcc 120 gccgccgccg caaatcccct tccgcgtctg tctggcctct ggggcttcta ggttagcgcg 180 tgcgaccacc atggccgagg aggtccaggc tccactttcc gccaccatgg cgaaggaggc 240 ccagtcgccg ccgtccgcaa ccatagcgga ggcgacggcg ccgccgcagc tcttattatt 300 taactccttt acgaagaggg aggagccatt ccagccccgg gtagagggga aggtagggat 360 gtacgtctgt ggcgtcactc cctacgactt tagccacatc ggccacgcgc gtgcctacgt 420 cgccttcgac gtcctctaca ggtaccttaa attcttgggg tatgaagttg aatatgtccg 480 taatttcacg gatattgatg acaagattat taagcgtgcc aatgaacgcg gtgaaacagt 540 aacaagcttg agtagccagt ttatcaatga atttcttctt gacatgactg agctccagtg 600 cttgcctcct acctgcgagc cacgggtaac agaacacatt gagcatatta taaagttgat 660 aacacagata atggagaatg gcaaagccta tgctattgaa ggagatgttt acttttcagt 720 tgaaagtttt cctgaatatc tcagtttatc tggaagaaaa tttgatcaaa atcaggcagg 780 tgcacgggtt gcttttgata caagaaagcg taatcctgca gacttcgcac tctggaaagc 840 tgcaaaggag ggtgaacctt tttgggatag cccttggggc cgtggaagac caggttggca 900 tattgaatgc agcgcaatga gtgctcacta tttaggacat gtattcgata ttcatggtgg 960 ggggaaagat ttgatttttc ctcatcatga gaatgagctt gcacaaagcc gcgcagctta 1020 tcctgatagc gaggtcaaat gctggatgca caatggcttt gttaacaagg atgataaaaa 1080 aatggcaaaa tcagataata actttttcac gattagagat atcattgctc tttaccatcc 1140 aatggcttta agatttttct tgatgcgcac acattataga tcagatgtta accattctga 1200 tcaagcgctt gagattgcat ctgatcgtgt ctactacatt tatcagactc tatatgactg 1260 tgaggaagtg ttagctacat atcgtgaaga gggtacctct ctcccagtgc cgtctgagga 1320 gcaaaatctg attggtaagc accattcaga attcttgaaa catatgtcga atgatcttaa 1380 aaccacagat gttctggacc gttgcttcat ggagctgctg aaggccataa acagcagtct 1440 gaatgatttg aagaaactgc agcaaaaaat agaacagcaa aagaagaaac agcaacagca 1500 gaagaagcag caacagcaga agcagcagca acagaagcaa cagcaattgc aaaaacagcc 1560 agaagattat attcaagctc tgattgcact ggaaacagaa cttaaaaaca aattgtctat 1620 acttggtctg atgccatctt catctttggc agaggtactg aagcaattga aggacaaatc 1680 attaaagcga gcagggctga ctgaagaaca attgcaagag cagattgagc agagaaatgt 1740 cgcaaggaag aataagcagt ttgagatatc tgatggaatc aggaaaaacc ttgctaccaa 1800 aggcatcgcc ctgatggacg aaccttctgg tacagtatgg agaccatgcg aaccagagcg 1860 gtctgaagag tcatgattag ctcactgact caacaagtga tggcggtgta aaatgagatt 1920 tttgcctgag ggcagttatc gcattttgaa gactaacaaa aatcgccatc tctggatgtg 1980 gtattctaca gggtaggggt tccaggttga ctcaccagtt aaaacatgca tttctggttg 2040 tataacaagc aatgaacccc atatatatac ttgacagttg actcc 2085 10 599 PRT Zea mays 10 Thr Leu Pro Cys Leu Leu Ser Thr Thr Pro Leu Ser Pro Pro Pro Pro 1 5 10 15 Pro Pro Gln Ile Pro Phe Arg Val Cys Leu Ala Ser Gly Ala Ser Arg 20 25 30 Leu Ala Arg Ala Thr Thr Met Ala Glu Glu Val Gln Ala Pro Leu Ser 35 40 45 Ala Thr Met Ala Lys Glu Ala Gln Ser Pro Pro Ser Ala Thr Ile Ala 50 55 60 Glu Ala Thr Ala Pro Pro Gln Leu Leu Leu Phe Asn Ser Phe Thr Lys 65 70 75 80 Arg Glu Glu Pro Phe Gln Pro Arg Val Glu Gly Lys Val Gly Met Tyr 85 90 95 Val Cys Gly Val Thr Pro Tyr Asp Phe Ser His Ile Gly His Ala Arg 100 105 110 Ala Tyr Val Ala Phe Asp Val Leu Tyr Arg Tyr Leu Lys Phe Leu Gly 115 120 125 Tyr Glu Val Glu Tyr Val Arg Asn Phe Thr Asp Ile Asp Asp Lys Ile 130 135 140 Ile Lys Arg Ala Asn Glu Arg Gly Glu Thr Val Thr Ser Leu Ser Ser 145 150 155 160 Gln Phe Ile Asn Glu Phe Leu Leu Asp Met Thr Glu Leu Gln Cys Leu 165 170 175 Pro Pro Thr Cys Glu Pro Arg Val Thr Glu His Ile Glu His Ile Ile 180 185 190 Lys Leu Ile Thr Gln Ile Met Glu Asn Gly Lys Ala Tyr Ala Ile Glu 195 200 205 Gly Asp Val Tyr Phe Ser Val Glu Ser Phe Pro Glu Tyr Leu Ser Leu 210 215 220 Ser Gly Arg Lys Phe Asp Gln Asn Gln Ala Gly Ala Arg Val Ala Phe 225 230 235 240 Asp Thr Arg Lys Arg Asn Pro Ala Asp Phe Ala Leu Trp Lys Ala Ala 245 250 255 Lys Glu Gly Glu Pro Phe Trp Asp Ser Pro Trp Gly Arg Gly Arg Pro 260 265 270 Gly Trp His Ile Glu Cys Ser Ala Met Ser Ala His Tyr Leu Gly His 275 280 285 Val Phe Asp Ile His Gly Gly Gly Lys Asp Leu Ile Phe Pro His His 290 295 300 Glu Asn Glu Leu Ala Gln Ser Arg Ala Ala Tyr Pro Asp Ser Glu Val 305 310 315 320 Lys Cys Trp Met His Asn Gly Phe Val Asn Lys Asp Asp Lys Lys Met 325 330 335 Ala Lys Ser Asp Asn Asn Phe Phe Thr Ile Arg Asp Ile Ile Ala Leu 340 345 350 Tyr His Pro Met Ala Leu Arg Phe Phe Leu Met Arg Thr His Tyr Arg 355 360 365 Ser Asp Val Asn His Ser Asp Gln Ala Leu Glu Ile Ala Ser Asp Arg 370 375 380 Val Tyr Tyr Ile Tyr Gln Thr Leu Tyr Asp Cys Glu Glu Val Leu Ala 385 390 395 400 Thr Tyr Arg Glu Glu Gly Thr Ser Leu Pro Val Pro Ser Glu Glu Gln 405 410 415 Asn Leu Ile Gly Lys His His Ser Glu Phe Leu Lys His Met Ser Asn 420 425 430 Asp Leu Lys Thr Thr Asp Val Leu Asp Arg Cys Phe Met Glu Leu Leu 435 440 445 Lys Ala Ile Asn Ser Ser Leu Asn Asp Leu Lys Lys Leu Gln Gln Lys 450 455 460 Ile Glu Gln Gln Lys Lys Lys Gln Gln Gln Gln Lys Lys Gln Gln Gln 465 470 475 480 Gln Lys Gln Gln Gln Gln Lys Gln Gln Gln Leu Gln Lys Gln Pro Glu 485 490 495 Asp Tyr Ile Gln Ala Leu Ile Ala Leu Glu Thr Glu Leu Lys Asn Lys 500 505 510 Leu Ser Ile Leu Gly Leu Met Pro Ser Ser Ser Leu Ala Glu Val Leu 515 520 525 Lys Gln Leu Lys Asp Lys Ser Leu Lys Arg Ala Gly Leu Thr Glu Glu 530 535 540 Gln Leu Gln Glu Gln Ile Glu Gln Arg Asn Val Ala Arg Lys Asn Lys 545 550 555 560 Gln Phe Glu Ile Ser Asp Gly Ile Arg Lys Asn Leu Ala Thr Lys Gly 565 570 575 Ile Ala Leu Met Asp Glu Pro Ser Gly Thr Val Trp Arg Pro Cys Glu 580 585 590 Pro Glu Arg Ser Glu Glu Ser 595 11 1957 DNA Oryza sativa 11 cgccagttct agggttagct cgtcggcgtc cagccctctc actctccccc tccgctctca 60 cgatggcgga gagcgcgaag ccgacgccgc agctggagct cttcaactcg atgacgaaga 120 agaaggagct cttcgagccg cttgtggagg ggaaggtccg catgtatgtg tgcggcgtca 180 cgccctacga cttcagccac atcggccacg cccgcgccta cgtcgccttc gacgtcctct 240 acaggtatct taaattcttg gggtacgagg tcgaatatgt gcgcaacttc actgatattg 300 atgacaagat tatcaaacga gcaaatgaag ctggtgaaac tgtaactagc ttgagcagcc 360 ggtttattaa tgaattcctt ctcgatatgg ctcagctcca gtgcttaccc ccaacttgtg 420 agccacgtgt gacggatcac attgaacata ttatagagtt gataaccaag ataatggaga 480 atgggaaagc ctatgctatg gaaggagatg tttacttttc agttgatact ttccctgagt 540 atctcagttt atctggaagg aagttagatc ataatcttgc tggttcgcgg gttgctgtcg 600 atacaagaaa gcggaaccct gcagactttg cgctgtggaa ggctgctaag gaaggcgaac 660 ctttctggga tagcccatgg ggccgtggta gaccaggatg gcatattgaa tgcagtgcaa 720 tgagtgctca ttatttagga catgtgtttg atatccatgg tggagggaaa gatctgatat 780 ttcctcatca tgagaatgag cttgctcaga gccgggcagc ttatccagaa agtgaggtca 840 aatgttggat gcacaatggg tttgttaaca aggatgatca gaaaatgtca aagtcagata 900 aaaatttctt cacaatccga gatattattg atctgtacca tcccatggct ttgaggtttt 960 tcctgatgcg cacacattac agaggagatg tgaatcactc tgacaaagca cttgagatag 1020 catctgatcg tgtctactac atatatcaga ctttatatga ctgtgaggaa gtgttgtctc 1080 aatatcgtgg agagaatatc tctgtcccgg tccctgttga ggaacaagat atggttaaca 1140 agcaccattc agaattcttg gaatctatgg cggatgatct tagaacaaca gatgttctgg 1200 atggctttac tgacttgctg aaggcaatta acagcaattt gaatgatttt aagaagttgc 1260 aacagaagct agagcagcaa aagaagaaac aacaacagca gaagcagcag aagcaaaagc 1320 agcagcaggc acagaaacaa ccagaagaat atattcaagc tatgtttgca cttgagacag 1380 aaattaaaaa taaaatatct atccttggtc tgatgccacc ttcttccttg gcagaggcac 1440 tgaagcaact taaggataaa gctttgaaga gagcagggtt gactgaagaa ctgttgcagg 1500 agcaaattga gcagagaact gctgcaagga aaaacaagca gtttgatgtg tctgaccaaa 1560 tcaggaaaca gctaggcagc aaaggcatag ccctcatgga tgaacctact ggtacagtat 1620 ggagaccatg cgagccagag tctgaatagt cacatgattg atttgtgctt tggttaacag 1680 gtgatggtac aaactggaaa atttaaccaa gcacatctgc tgaattggtg taaattgatg 1740 cagatcaaca tttttttttg taattttgta ggggtttaag ttcactggcc aactgaaact 1800 tgcgtttctc gtggtgtaag aagcaaaacc ccatatactg atatactcga ggactccctt 1860 gttggatgtt atgctttgga tttgaatatt gaagtcaaat cataattaca tttgcatgat 1920 caaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaa 1957 12 548 PRT Oryza sativa 12 Pro Val Leu Gly Leu Ala Arg Arg Arg Pro Ala Leu Ser Leu Ser Pro 1 5 10 15 Ser Ala Leu Thr Met Ala Glu Ser Ala Lys Pro Thr Pro Gln Leu Glu 20 25 30 Leu Phe Asn Ser Met Thr Lys Lys Lys Glu Leu Phe Glu Pro Leu Val 35 40 45 Glu Gly Lys Val Arg Met Tyr Val Cys Gly Val Thr Pro Tyr Asp Phe 50 55 60 Ser His Ile Gly His Ala Arg Ala Tyr Val Ala Phe Asp Val Leu Tyr 65 70 75 80 Arg Tyr Leu Lys Phe Leu Gly Tyr Glu Val Glu Tyr Val Arg Asn Phe 85 90 95 Thr Asp Ile Asp Asp Lys Ile Ile Lys Arg Ala Asn Glu Ala Gly Glu 100 105 110 Thr Val Thr Ser Leu Ser Ser Arg Phe Ile Asn Glu Phe Leu Leu Asp 115 120 125 Met Ala Gln Leu Gln Cys Leu Pro Pro Thr Cys Glu Pro Arg Val Thr 130 135 140 Asp His Ile Glu His Ile Ile Glu Leu Ile Thr Lys Ile Met Glu Asn 145 150 155 160 Gly Lys Ala Tyr Ala Met Glu Gly Asp Val Tyr Phe Ser Val Asp Thr 165 170 175 Phe Pro Glu Tyr Leu Ser Leu Ser Gly Arg Lys Leu Asp His Asn Leu 180 185 190 Ala Gly Ser Arg Val Ala Val Asp Thr Arg Lys Arg Asn Pro Ala Asp 195 200 205 Phe Ala Leu Trp Lys Ala Ala Lys Glu Gly Glu Pro Phe Trp Asp Ser 210 215 220 Pro Trp Gly Arg Gly Arg Pro Gly Trp His Ile Glu Cys Ser Ala Met 225 230 235 240 Ser Ala His Tyr Leu Gly His Val Phe Asp Ile His Gly Gly Gly Lys 245 250 255 Asp Leu Ile Phe Pro His His Glu Asn Glu Leu Ala Gln Ser Arg Ala 260 265 270 Ala Tyr Pro Glu Ser Glu Val Lys Cys Trp Met His Asn Gly Phe Val 275 280 285 Asn Lys Asp Asp Gln Lys Met Ser Lys Ser Asp Lys Asn Phe Phe Thr 290 295 300 Ile Arg Asp Ile Ile Asp Leu Tyr His Pro Met Ala Leu Arg Phe Phe 305 310 315 320 Leu Met Arg Thr His Tyr Arg Gly Asp Val Asn His Ser Asp Lys Ala 325 330 335 Leu Glu Ile Ala Ser Asp Arg Val Tyr Tyr Ile Tyr Gln Thr Leu Tyr 340 345 350 Asp Cys Glu Glu Val Leu Ser Gln Tyr Arg Gly Glu Asn Ile Ser Val 355 360 365 Pro Val Pro Val Glu Glu Gln Asp Met Val Asn Lys His His Ser Glu 370 375 380 Phe Leu Glu Ser Met Ala Asp Asp Leu Arg Thr Thr Asp Val Leu Asp 385 390 395 400 Gly Phe Thr Asp Leu Leu Lys Ala Ile Asn Ser Asn Leu Asn Asp Phe 405 410 415 Lys Lys Leu Gln Gln Lys Leu Glu Gln Gln Lys Lys Lys Gln Gln Gln 420 425 430 Gln Lys Gln Gln Lys Gln Lys Gln Gln Gln Ala Gln Lys Gln Pro Glu 435 440 445 Glu Tyr Ile Gln Ala Met Phe Ala Leu Glu Thr Glu Ile Lys Asn Lys 450 455 460 Ile Ser Ile Leu Gly Leu Met Pro Pro Ser Ser Leu Ala Glu Ala Leu 465 470 475 480 Lys Gln Leu Lys Asp Lys Ala Leu Lys Arg Ala Gly Leu Thr Glu Glu 485 490 495 Leu Leu Gln Glu Gln Ile Glu Gln Arg Thr Ala Ala Arg Lys Asn Lys 500 505 510 Gln Phe Asp Val Ser Asp Gln Ile Arg Lys Gln Leu Gly Ser Lys Gly 515 520 525 Ile Ala Leu Met Asp Glu Pro Thr Gly Thr Val Trp Arg Pro Cys Glu 530 535 540 Pro Glu Ser Glu 545 13 2183 DNA Glycine max 13 gcacgagata aacgataacg ttatttggct gtgaatttgg gatgagctgg tccggtgcaa 60 aaatgggtac ggtgtctctt ctcaagtgct acagaccctt tttctctatg cttttccctc 120 actccgctcc acccagactc cacgccgcca tcttcaggag caaaaacttt tctttttgcg 180 ccacctcgtc cccgccgttg acggcggaga agggttgcgg caaatccgac gccgagtgtc 240 ccaccttgcc ggaggtgtgg ctgcacaaca ccatgagtag gacgaaggaa ctcttcaaac 300 ccaaagtgga atccaaagtg ggaatgtacg tgtgcggcgt caccgcttat gatcttagcc 360 atattggaca cgctcgcgta tacgtcaatt tcgaccttct ttacagatac tttaagcatt 420 tgggatttga agtctgttat gttcgcaatt tcactgacgt agatgacaag ataattgcta 480 gagcaaagga gttaggagaa gatccaatca gtttgagctg gcgctattgt gaagagttct 540 gtcaagacat ggtaactctt aattgtctgt ctccctctgt ggaaccaaag gtctcagagc 600 acatgcccca aatcattgat atgattgaga agatccttaa taatgggtat gcctacattg 660 ttgatgggga tgtgtacttt aatgtagaaa aatttccaga atatgggaaa ctatctagtc 720 gagatctaga agataatcga gctggtgaga gggttgcagt tgattctaga aagaaaaatc 780 ctgctgattt tgctctttgg aagtctgcaa agccagggga gccattttgg gagagtccct 840 ggggtcctgg aagacctggg tggcatattg aatgcagtgc catgagtgca gcttatcttg 900 gttactcttt tgatatccat ggtggaggaa tcgaccttgt gtttcctcac catgagaatg 960 aaattgctca gagttgtgct gcatgtaaga aaagtgatat aagtatatgg atgcacaatg 1020 gttttgtcac cattgactct gtgaaaatgt caaaatcttt ggggaatttt ttcacaatac 1080 gtcaggttat agacgtttac catccactgg ccttgagata ttttttgatg agcgcacatt 1140 atcgatctcc tattaactac tcaaatatac agctcgaaag tgcttcagac cgtgtttttt 1200 atatatatga gacattacat gaatgtgaaa gctttttgaa tcagcatgat cagaggaagg 1260 attccacccc accggatact ttggatatta ttgataagtt ccacgatgtt tttttgacct 1320 caatgtcgga tgatcttcac actccagttg tattggctgg aatgtctgat ccattaaaat 1380 caatcaatga tttgctgcat gctcgtaagg ggaaaaaaca acaatttcga atcgaatcac 1440 tatcagcttt ggagaagagc gtcagggatg tccttactgt tttaggactt atgcctgcaa 1500 gttactctga ggttttgcag cagcttaagg taaaagcttt aaaacgtgca aactttacgg 1560 aagaagaagt cttgcagaaa attgaagaac gggctactgc tagaatgcaa aaggagtatg 1620 ctaaatcgga tgcaatcagg aaggatttgg ctgtacttgg tattactctt atggacagtc 1680 caaatggcac aacttggagg cctgccattc ctcttccact tcaagagctg ctctaagtca 1740 agagttgttc aacatctcca aagcaaaacc aagaaatgta agttactagg ttctggtata 1800 tggaaatcaa ttataaggga tgccacgggt gtatctcgct atcaacttct cagaatgata 1860 aaggcgaccc cttcttaact cttgatgccg taaaaacatg gattacaatt tacgttttga 1920 tagagatgtg cttagtgtag ttgtcttggt gaccaatatt gaattttttt tttttcttca 1980 tataccgggc ttttaacccc tagagtattc atagtttcaa cgaatttgag tttcagatta 2040 atattaaaat aaatagtcgc actatcacta gagtagtgtt atgtttctac tttctagagt 2100 agcttcggtt taatattgag aaagacattt tttttgtggt gataatgaat tttctgttgt 2160 tttttaaaaa aaaaaaaaaa aaa 2183 14 574 PRT Glycine max 14 Thr Ile Thr Leu Phe Gly Cys Glu Phe Gly Met Ser Trp Ser Gly Ala 1 5 10 15 Lys Met Gly Thr Val Ser Leu Leu Lys Cys Tyr Arg Pro Phe Phe Ser 20 25 30 Met Leu Phe Pro His Ser Ala Pro Pro Arg Leu His Ala Ala Ile Phe 35 40 45 Arg Ser Lys Asn Phe Ser Phe Cys Ala Thr Ser Ser Pro Pro Leu Thr 50 55 60 Ala Glu Lys Gly Cys Gly Lys Ser Asp Ala Glu Cys Pro Thr Leu Pro 65 70 75 80 Glu Val Trp Leu His Asn Thr Met Ser Arg Thr Lys Glu Leu Phe Lys 85 90 95 Pro Lys Val Glu Ser Lys Val Gly Met Tyr Val Cys Gly Val Thr Ala 100 105 110 Tyr Asp Leu Ser His Ile Gly His Ala Arg Val Tyr Val Asn Phe Asp 115 120 125 Leu Leu Tyr Arg Tyr Phe Lys His Leu Gly Phe Glu Val Cys Tyr Val 130 135 140 Arg Asn Phe Thr Asp Val Asp Asp Lys Ile Ile Ala Arg Ala Lys Glu 145 150 155 160 Leu Gly Glu Asp Pro Ile Ser Leu Ser Trp Arg Tyr Cys Glu Glu Phe 165 170 175 Cys Gln Asp Met Val Thr Leu Asn Cys Leu Ser Pro Ser Val Glu Pro 180 185 190 Lys Val Ser Glu His Met Pro Gln Ile Ile Asp Met Ile Glu Lys Ile 195 200 205 Leu Asn Asn Gly Tyr Ala Tyr Ile Val Asp Gly Asp Val Tyr Phe Asn 210 215 220 Val Glu Lys Phe Pro Glu Tyr Gly Lys Leu Ser Ser Arg Asp Leu Glu 225 230 235 240 Asp Asn Arg Ala Gly Glu Arg Val Ala Val Asp Ser Arg Lys Lys Asn 245 250 255 Pro Ala Asp Phe Ala Leu Trp Lys Ser Ala Lys Pro Gly Glu Pro Phe 260 265 270 Trp Glu Ser Pro Trp Gly Pro Gly Arg Pro Gly Trp His Ile Glu Cys 275 280 285 Ser Ala Met Ser Ala Ala Tyr Leu Gly Tyr Ser Phe Asp Ile His Gly 290 295 300 Gly Gly Ile Asp Leu Val Phe Pro His His Glu Asn Glu Ile Ala Gln 305 310 315 320 Ser Cys Ala Ala Cys Lys Lys Ser Asp Ile Ser Ile Trp Met His Asn 325 330 335 Gly Phe Val Thr Ile Asp Ser Val Lys Met Ser Lys Ser Leu Gly Asn 340 345 350 Phe Phe Thr Ile Arg Gln Val Ile Asp Val Tyr His Pro Leu Ala Leu 355 360 365 Arg Tyr Phe Leu Met Ser Ala His Tyr Arg Ser Pro Ile Asn Tyr Ser 370 375 380 Asn Ile Gln Leu Glu Ser Ala Ser Asp Arg Val Phe Tyr Ile Tyr Glu 385 390 395 400 Thr Leu His Glu Cys Glu Ser Phe Leu Asn Gln His Asp Gln Arg Lys 405 410 415 Asp Ser Thr Pro Pro Asp Thr Leu Asp Ile Ile Asp Lys Phe His Asp 420 425 430 Val Phe Leu Thr Ser Met Ser Asp Asp Leu His Thr Pro Val Val Leu 435 440 445 Ala Gly Met Ser Asp Pro Leu Lys Ser Ile Asn Asp Leu Leu His Ala 450 455 460 Arg Lys Gly Lys Lys Gln Gln Phe Arg Ile Glu Ser Leu Ser Ala Leu 465 470 475 480 Glu Lys Ser Val Arg Asp Val Leu Thr Val Leu Gly Leu Met Pro Ala 485 490 495 Ser Tyr Ser Glu Val Leu Gln Gln Leu Lys Val Lys Ala Leu Lys Arg 500 505 510 Ala Asn Phe Thr Glu Glu Glu Val Leu Gln Lys Ile Glu Glu Arg Ala 515 520 525 Thr Ala Arg Met Gln Lys Glu Tyr Ala Lys Ser Asp Ala Ile Arg Lys 530 535 540 Asp Leu Ala Val Leu Gly Ile Thr Leu Met Asp Ser Pro Asn Gly Thr 545 550 555 560 Thr Trp Arg Pro Ala Ile Pro Leu Pro Leu Gln Glu Leu Leu 565 570 15 633 DNA Zea mays 15 gcacacacgt cggtccaaac acgcgccgtc cgctcgcggc ttctccaacc aaagccgtgc 60 agccaaatcc gaagggtagc gtagcacggg gacgacgcca tgagccgcgc gctcctctcc 120 cacgtcctcc accgtccgcc gcacttcgcg tacacctgct taaggagtgg cgttggtgcc 180 cgaggaggag tgctcgcttc tggcatccac ccactccgtc gtctcaattg cagcgcggtt 240 gaagccgttc ccggccccac cgaggaggcg cctgctcctc aggcaaggaa gaaaagagta 300 gtttctggtg tacagccaac aggatcggtt caccttggaa attatctagg ggcaattaag 360 aattgggttg cacttcagga ttcatatgag acattctttt tcatcgtgga tcttcatgca 420 attactttac catatgaggc gccactgctt tctaaagcaa caagaagcac tgctgcaata 480 tatcttgcat gtggcgtcga cagctccaag gcttctatct ttgtacagtc tcatgtccgt 540 gctcatgttg agttgatgtg gctattgagt tcttctactc ctattggctg gctgaataga 600 atgatccagt tcaaagagaa gtctcgcaag gcg 633 16 410 PRT Zea mays 16 His Gly Asp Asp Ala Met Ser Arg Ala Leu Leu Ser His Val Leu His 1 5 10 15 Arg Pro Pro His Phe Ala Tyr Thr Cys Leu Arg Ser Gly Val Gly Ala 20 25 30 Arg Gly Gly Val Leu Ala Ser Gly Ile His Pro Leu Arg Arg Leu Asn 35 40 45 Cys Ser Ala Val Glu Ala Val Pro Gly Pro Thr Glu Glu Ala Pro Ala 50 55 60 Pro Gln Ala Arg Lys Lys Arg Val Val Ser Gly Val Gln Pro Thr Gly 65 70 75 80 Ser Val His Leu Gly Asn Tyr Leu Gly Ala Ile Lys Asn Trp Val Ala 85 90 95 Leu Gln Asp Ser Tyr Glu Thr Phe Phe Phe Ile Val Asp Leu His Ala 100 105 110 Ile Thr Leu Pro Tyr Glu Ala Pro Leu Leu Ser Lys Ala Thr Arg Ser 115 120 125 Thr Ala Ala Ile Tyr Leu Ala Cys Gly Val Asp Ser Ser Lys Ala Ser 130 135 140 Ile Phe Val Gln Ser His Val Arg Ala His Val Glu Leu Met Trp Leu 145 150 155 160 Leu Ser Ser Ser Thr Pro Ile Gly Trp Leu Asn Arg Met Ile Gln Phe 165 170 175 Lys Glu Lys Ser Arg Lys Ala Gly Asp Glu Asn Val Gly Val Ala Leu 180 185 190 Leu Thr Tyr Pro Val Leu Met Ala Ser Asp Ile Leu Leu Tyr Gln Ser 195 200 205 Asp Leu Val Pro Val Gly Glu Asp Gln Thr Gln His Leu Glu Leu Thr 210 215 220 Arg Glu Ile Ala Glu Arg Val Asn Asn Leu Tyr Gly Gly Arg Lys Trp 225 230 235 240 Lys Lys Leu Gly Gly Arg Gly Gly Leu Leu Phe Lys Val Pro Glu Ala 245 250 255 Leu Ile Pro Pro Ala Gly Ala Arg Val Met Ser Leu Thr Asp Gly Leu 260 265 270 Ser Lys Met Ser Lys Ser Ala Pro Ser Asp Gln Ser Arg Ile Asn Leu 275 280 285 Leu Asp Pro Lys Asp Val Ile Ala Asn Lys Ile Lys Arg Cys Lys Thr 290 295 300 Asp Ser Phe Pro Gly Met Glu Phe Asp Asn Pro Glu Arg Pro Glu Cys 305 310 315 320 Arg Asn Leu Leu Ser Ile Tyr Gln Ile Ile Thr Glu Lys Thr Lys Glu 325 330 335 Glu Val Val Ser Glu Cys Gln His Met Asn Trp Gly Thr Phe Lys Thr 340 345 350 Thr Leu Thr Glu Ala Leu Ile Asp His Leu Gln Pro Ile Gln Val Arg 355 360 365 Tyr Glu Glu Ile Met Ser Asp Pro Ala Tyr Leu Asp Asn Val Leu Leu 370 375 380 Glu Gly Ala Val Lys Ala Ala Glu Ile Ala Asp Ile Thr Leu Asn Asn 385 390 395 400 Val Tyr Gln Ala Met Gly Phe Leu Arg Arg 405 410 17 1536 DNA Glycine max 17 gcacgaggga agatgagcgt ttcacatttc gcggttctat cgtcgtgttg ttgtccacgc 60 ttggcccctt ctctgtcgcg tgcttcaacc cttcgttctc gcatccggtg ttgtactact 120 ctcactgcta cttcttcaga gactcccact ccaaccttcg tgaagaaacg agtagtgtcg 180 ggggttcagc ccacgggctc aattcacctc ggaaactatt ttggcgccat caagaattgg 240 gttgcccttc agaatgtgta tgatacactt ttcttcattg tggacctgca cgcgattaca 300 ttaccatatg acacccaaca attatctaag gctacaaggt caactgctgc tatttaccta 360 gcatgtggag tggatccttc aaaggcttca gtatttgtac agtctcatgt tcgggcacat 420 gtagaattga tgtggctgct aagttccaca acaccaattg gttggctgaa caaaatgata 480 caatttaaag agaaatctcg caaggcggga gatgaagaag ttggggttgc ccttttgact 540 tatcctgttc tgatggcttc tgatatactt ctatatcagt ctgattttgt ccctgttggt 600 gaagatcaaa agcagcactt ggagttgact cgtgacttgg ctgaacgggt taataattta 660 tatggaggaa gaaagtggaa gaaattaggc ggttatgaca gccgaggtgg tactatattt 720 aaggttccag agccccttat acctccagcc ggagcccgga taatgtccct aactgatggc 780 ctgtccaaga tgtcaaagtc tgcaccttct gatcaatcca gaatcaatat tcttgatcct 840 aaagatctca tagcaaacaa gatcaaacgt tgcaaaactg attcatttcc tggcttggaa 900 tttgacaact ctgagaggcc tgaatgtaac aatcttgttt ccatatacca gcttatttca 960 ggaaagacga aagaggaagt tgtgcaggaa tgccaaaaca tgaactgggg cacattcaaa 1020 cctcttttaa cagatgcctt gattgatcat ttgcatccca ttcaggttcg ctatgaggaa 1080 atcatgtccg attcaggtta tttagatgga gttttagcac aaggtgctag aaatgcagca 1140 gatatagcag attctacact taataatatt taccaagcaa tgggattttt taagagacag 1200 tgataattga tgccaaataa attaaagatt ggcgagacgt caacttaaaa gctaacttct 1260 ggatgattca tgatgggcct caaaattttg gagtaatctt atggacatat acttgactac 1320 tggaaatgga aagattattg atgcaaagcc taaaggtccc attagttctt gatgcaatgg 1380 gctttgtatc tccttcattt ttctccgagt atggtcgttg ccttcatttt atattttatt 1440 gtttcaatct ctttcattat ttacttgtat tttataatga attcagcata ttgataaatt 1500 gttccgccat tgtatttaaa aaaaaaaaaa aaaaaa 1536 18 400 PRT Glycine max 18 Ala Arg Gly Lys Met Ser Val Ser His Phe Ala Val Leu Ser Ser Cys 1 5 10 15 Cys Cys Pro Arg Leu Ala Pro Ser Leu Ser Arg Ala Ser Thr Leu Arg 20 25 30 Ser Arg Ile Arg Cys Cys Thr Thr Leu Thr Ala Thr Ser Ser Glu Thr 35 40 45 Pro Thr Pro Thr Phe Val Lys Lys Arg Val Val Ser Gly Val Gln Pro 50 55 60 Thr Gly Ser Ile His Leu Gly Asn Tyr Phe Gly Ala Ile Lys Asn Trp 65 70 75 80 Val Ala Leu Gln Asn Val Tyr Asp Thr Leu Phe Phe Ile Val Asp Leu 85 90 95 His Ala Ile Thr Leu Pro Tyr Asp Thr Gln Gln Leu Ser Lys Ala Thr 100 105 110 Arg Ser Thr Ala Ala Ile Tyr Leu Ala Cys Gly Val Asp Pro Ser Lys 115 120 125 Ala Ser Val Phe Val Gln Ser His Val Arg Ala His Val Glu Leu Met 130 135 140 Trp Leu Leu Ser Ser Thr Thr Pro Ile Gly Trp Leu Asn Lys Met Ile 145 150 155 160 Gln Phe Lys Glu Lys Ser Arg Lys Ala Gly Asp Glu Glu Val Gly Val 165 170 175 Ala Leu Leu Thr Tyr Pro Val Leu Met Ala Ser Asp Ile Leu Leu Tyr 180 185 190 Gln Ser Asp Phe Val Pro Val Gly Glu Asp Gln Lys Gln His Leu Glu 195 200 205 Leu Thr Arg Asp Leu Ala Glu Arg Val Asn Asn Leu Tyr Gly Gly Arg 210 215 220 Lys Trp Lys Lys Leu Gly Gly Tyr Asp Ser Arg Gly Gly Thr Ile Phe 225 230 235 240 Lys Val Pro Glu Pro Leu Ile Pro Pro Ala Gly Ala Arg Ile Met Ser 245 250 255 Leu Thr Asp Gly Leu Ser Lys Met Ser Lys Ser Ala Pro Ser Asp Gln 260 265 270 Ser Arg Ile Asn Ile Leu Asp Pro Lys Asp Leu Ile Ala Asn Lys Ile 275 280 285 Lys Arg Cys Lys Thr Asp Ser Phe Pro Gly Leu Glu Phe Asp Asn Ser 290 295 300 Glu Arg Pro Glu Cys Asn Asn Leu Val Ser Ile Tyr Gln Leu Ile Ser 305 310 315 320 Gly Lys Thr Lys Glu Glu Val Val Gln Glu Cys Gln Asn Met Asn Trp 325 330 335 Gly Thr Phe Lys Pro Leu Leu Thr Asp Ala Leu Ile Asp His Leu His 340 345 350 Pro Ile Gln Val Arg Tyr Glu Glu Ile Met Ser Asp Ser Gly Tyr Leu 355 360 365 Asp Gly Val Leu Ala Gln Gly Ala Arg Asn Ala Ala Asp Ile Ala Asp 370 375 380 Ser Thr Leu Asn Asn Ile Tyr Gln Ala Met Gly Phe Phe Lys Arg Gln 385 390 395 400 19 725 DNA Triticum aestivum 19 ctcgtgccga attcggcacg aggcggttca ttatttaagg ttcctgaagc ccttatccct 60 ccagcagggg cccgtgtgat gtccttaact gatggcctct ccaagatgtc gaagtctgct 120 ccttcagatt tgtctcgcat taaccttctt gacccaaatg atgtgattgt gaacaaaatc 180 aaacgctgca aaactgactc gctccctggc ttggaattcg acaacccaga gaggccggaa 240 tgcaaaaatc ttctctcagt ctaccagatc atcactggaa aaacgaaaga ggaagttgtt 300 agtgaatgcc aagatatgaa ctgggggacg ttcaaggtta cccttacgga tgccttaatt 360 gatcatctgc aacctattca ggttcgatac gaggagatca tgtctgatcc aggttatttg 420 gacaatgttc tgctaaatgg ggcagggaaa gcttctgaga tagcagacgc caccctcaac 480 aacgtctacc aagccatggg tttcttgcgc agatagcata tgtagaacat tttttataac 540 tgcacaatgc tagttttgca cttgttggcc tttctgctag tggtactgat aagcgttttg 600 tttgatatgc ttggattagc cttttgttcc tggttattat ggacactgtt aataggtatt 660 aaaaggatta tttactgaaa aaaaaaaaaa aaaaaaaaaa attaaaaggg ggcgcgcgta 720 ccata 725 20 171 PRT Triticum aestivum 20 Leu Val Pro Asn Ser Ala Arg Gly Gly Ser Leu Phe Lys Val Pro Glu 1 5 10 15 Ala Leu Ile Pro Pro Ala Gly Ala Arg Val Met Ser Leu Thr Asp Gly 20 25 30 Leu Ser Lys Met Ser Lys Ser Ala Pro Ser Asp Leu Ser Arg Ile Asn 35 40 45 Leu Leu Asp Pro Asn Asp Val Ile Val Asn Lys Ile Lys Arg Cys Lys 50 55 60 Thr Asp Ser Leu Pro Gly Leu Glu Phe Asp Asn Pro Glu Arg Pro Glu 65 70 75 80 Cys Lys Asn Leu Leu Ser Val Tyr Gln Ile Ile Thr Gly Lys Thr Lys 85 90 95 Glu Glu Val Val Ser Glu Cys Gln Asp Met Asn Trp Gly Thr Phe Lys 100 105 110 Val Thr Leu Thr Asp Ala Leu Ile Asp His Leu Gln Pro Ile Gln Val 115 120 125 Arg Tyr Glu Glu Ile Met Ser Asp Pro Gly Tyr Leu Asp Asn Val Leu 130 135 140 Leu Asn Gly Ala Gly Lys Ala Ser Glu Ile Ala Asp Ala Thr Leu Asn 145 150 155 160 Asn Val Tyr Gln Ala Met Gly Phe Leu Arg Arg 165 170 21 1062 DNA Zea mays 21 gcacgaggga catcacgctg ctggatttcc tgagagaggt gggccgtttt gcacgcgtgg 60 gtacaatgat cgccaaggag agcgtcaaga agcgtcttgc gtcggaagac gggatgagct 120 acaccgagtt tacctaccag ctgctgcagg gctacgactt cctttacatg ttcaagaata 180 tgggtgtcaa tgtgcagatc gggggcagcg atcagtgggg gaacatcaca gcgggaactg 240 agttgatcag aaaaatcttg caggttgaag gggcgcatgg actcacattc ccacttctgc 300 tgaagagcga cggtaccaaa tttggaaaga cggaggatgg ggcaatctgg ctctcttcga 360 agatgctttc tccttacaag ttctatcagt acttctttgc ggtgccagac atcgatgtca 420 tcaggtttat gaagatcctg acgttcctga gcttggatga gattctggag ctagaagact 480 cgatgaagaa gcctggctat gtgccaaaca ctgttcagaa gaggcttgca gaagaggtga 540 cgcgatttgt tcatggcgag gagggattgg aggaggcatt gaaggcaacc gaggccttga 600 gacctggtgc tcagacacaa ttggatgcac aaacaattga ggggatagca gatgatgtgc 660 cttcatgctc tttagcttat gatcaagtgt tcaagtctcc acttattgat ttggctgttt 720 ccacaggttt gctcactagt aagtcagcag ttaagcggct tattaagcaa ggtggtctgt 780 acttgaataa cgtgaggatt gatagtgagg ataagctggt tgaggaaggt gatatagttg 840 atgggaaggt gctcttgttg tctgctggaa agaagaacaa gatggttgtg aggatatctt 900 gactactctt atttgttctt tataacttat tttagccatt gaggagaaaa gtaacggtgt 960 tgtgtcttca aaactcaaat gagctgtcta tgagcataca gattgttata ttggagaggt 1020 tgaacacacc tttttttttg ctctaaaaaa aaaaaaaaaa aa 1062 22 299 PRT Zea mays 22 Thr Arg Asp Ile Thr Leu Leu Asp Phe Leu Arg Glu Val Gly Arg Phe 1 5 10 15 Ala Arg Val Gly Thr Met Ile Ala Lys Glu Ser Val Lys Lys Arg Leu 20 25 30 Ala Ser Glu Asp Gly Met Ser Tyr Thr Glu Phe Thr Tyr Gln Leu Leu 35 40 45 Gln Gly Tyr Asp Phe Leu Tyr Met Phe Lys Asn Met Gly Val Asn Val 50 55 60 Gln Ile Gly Gly Ser Asp Gln Trp Gly Asn Ile Thr Ala Gly Thr Glu 65 70 75 80 Leu Ile Arg Lys Ile Leu Gln Val Glu Gly Ala His Gly Leu Thr Phe 85 90 95 Pro Leu Leu Leu Lys Ser Asp Gly Thr Lys Phe Gly Lys Thr Glu Asp 100 105 110 Gly Ala Ile Trp Leu Ser Ser Lys Met Leu Ser Pro Tyr Lys Phe Tyr 115 120 125 Gln Tyr Phe Phe Ala Val Pro Asp Ile Asp Val Ile Arg Phe Met Lys 130 135 140 Ile Leu Thr Phe Leu Ser Leu Asp Glu Ile Leu Glu Leu Glu Asp Ser 145 150 155 160 Met Lys Lys Pro Gly Tyr Val Pro Asn Thr Val Gln Lys Arg Leu Ala 165 170 175 Glu Glu Val Thr Arg Phe Val His Gly Glu Glu Gly Leu Glu Glu Ala 180 185 190 Leu Lys Ala Thr Glu Ala Leu Arg Pro Gly Ala Gln Thr Gln Leu Asp 195 200 205 Ala Gln Thr Ile Glu Gly Ile Ala Asp Asp Val Pro Ser Cys Ser Leu 210 215 220 Ala Tyr Asp Gln Val Phe Lys Ser Pro Leu Ile Asp Leu Ala Val Ser 225 230 235 240 Thr Gly Leu Leu Thr Ser Lys Ser Ala Val Lys Arg Leu Ile Lys Gln 245 250 255 Gly Gly Leu Tyr Leu Asn Asn Val Arg Ile Asp Ser Glu Asp Lys Leu 260 265 270 Val Glu Glu Gly Asp Ile Val Asp Gly Lys Val Leu Leu Leu Ser Ala 275 280 285 Gly Lys Lys Asn Lys Met Val Val Arg Ile Ser 290 295 23 346 PRT Drosophila melanogaster 23 Met Val Asp Lys Val Ala Asn Gly Val Ser Lys Lys Gly Ala Lys Lys 1 5 10 15 Ala Lys Ala Ala Lys Lys Ala Lys Ala Asn Ala Ser Thr Ala Ala Ala 20 25 30 Asn Asn Ser Gly Gly Asp Ser Ala Asp His Ala Ala Gly Arg Tyr Gly 35 40 45 Ser Met Ser Lys Asp Lys Arg Ser Arg Asn Val Val Ser Ser Gly Val 50 55 60 Gly Lys Gly Val Trp Val Arg Gly Arg Val His Thr Ser Arg Ala Lys 65 70 75 80 Gly Lys Cys Arg Ser Ser Thr Val Cys Ala Val Gly Asp Val Ser Lys 85 90 95 Met Val Lys Ala Gly Asn Lys Ser Asp Ala Lys Val Ala Val Ser Ser 100 105 110 Lys Ser Cys Thr Ser Ser Val Val Ser Ala Lys Ala Asp Ala Ser Arg 115 120 125 Asn Ala Asp Asp Ala Gly Asn Arg Val Asn Asp Thr Arg Asp Asn Arg 130 135 140 Val Asp Arg Thr Ala Asn Ala Arg Ala Gly Val Cys Arg Arg Asp Thr 145 150 155 160 Gly Thr His Thr Lys Ser Ala Ala Ser Gly Gly Ala Asn Val Thr Val 165 170 175 Ser Tyr Lys Asp Ser Ala Tyr Ala Ser Tyr Lys Met Ala Ala Ala Asp 180 185 190 Asp Lys Val Tyr Thr Val Gly Ala Val Arg Ala Asp Ser Asn Thr His 195 200 205 Arg His Thr Val Gly Asp Met Ala Lys Tyr His Tyr His Val His Thr 210 215 220 Gly Asn Thr Thr Ser Lys Gly Arg Asp Lys Tyr Ala Lys Ser Val Gly 225 230 235 240 Tyr Lys Val Asp Ala Lys Ala Asp Gly Val Ala Met Arg Ala Gly Val 245 250 255 Thr Gly Asp Asp Ser Thr Asn Lys Gly Arg Val Lys Ala Lys Tyr Asp 260 265 270 Thr Asp Tyr Asp Lys Ala Arg Tyr Thr Met Asp Asn Asn Val Tyr Ser 275 280 285 Asn Ser Tyr Asp Met Met Arg Gly Ser Gly Ala Arg His Asp Tyr Arg 290 295 300 Ala Lys His His Gly Asp Thr Ser Lys Ala Ala Tyr Ser Arg Tyr Gly 305 310 315 320 Cys His Ala Gly Gly Gly Gly Met Arg Val Val Met Tyr Gly Asp Asn 325 330 335 Arg Lys Thr Ser Met Arg Asp Lys Arg Thr 340 345 24 501 PRT Rattus norvegicus 24 Met Pro Ser Ala Asn Ala Ser Arg Lys Gly Gln Glu Lys Pro Arg Glu 1 5 10 15 Ile Val Asp Ala Ala Glu Asp Tyr Ala Lys Glu Arg Tyr Gly Val Ser 20 25 30 Ser Met Ile Gln Ser Gln Glu Lys Pro Asp Arg Val Leu Val Arg Val 35 40 45 Lys Asp Leu Thr Val Gln Lys Ala Asp Glu Val Val Trp Val Arg Ala 50 55 60 Arg Val His Thr Ser Arg Ala Lys Gly Lys Gln Cys Phe Leu Val Leu 65 70 75 80 Arg Gln Gln Gln Phe Asn Val Gln Ala Leu Val Ala Val Gly Asp His 85 90 95 Ala Ser Lys Gln Met Val Lys Phe Ala Ala Asn Ile Asn Lys Glu Ser 100 105 110 Ile Ile Asp Val Glu Gly Ile Val Arg Lys Val Asn Gln Lys Ile Gly 115 120 125 Ser Cys Thr Gln Gln Asp Val Glu Leu His Val Gln Lys Ile Tyr Val 130 135 140 Ile Ser Leu Ala Glu Pro Arg Leu Pro Leu Gln Leu Asp Asp Ala Ile 145 150 155 160 Arg Pro Glu Val Glu Gly Glu Glu Asp Gly Arg Ala Thr Val Asn Gln 165 170 175 Asp Thr Arg Leu Asp Asn Arg Ile Ile Asp Leu Arg Thr Ser Thr Ser 180 185 190 Gln Ala Ile Phe His Leu Gln Ser Gly Ile Cys His Leu Phe Arg Glu 195 200 205 Thr Leu Ile Asn Lys Gly Phe Val Glu Ile Gln Thr Pro Lys Ile Ile 210 215 220 Ser Ala Ala Ser Glu Gly Gly Ala Asn Val Phe Thr Val Ser Tyr Phe 225 230 235 240 Lys Ser Asn Ala Tyr Leu Ala Gln Ser Pro Gln Leu Tyr Lys Gln Met 245 250 255 Cys Ile Cys Ala Asp Phe Glu Lys Val Phe Cys Ile Gly Pro Val Phe 260 265 270 Arg Ala Glu Asp Ser Asn Thr His Arg His Leu Thr Glu Phe Val Gly 275 280 285 Leu Asp Ile Glu Met Ala Phe Asn Tyr His Tyr His Glu Val Val Glu 290 295 300 Glu Ile Ala Asp Thr Leu Val Gln Ile Phe Lys Gly Leu Gln Glu Arg 305 310 315 320 Phe Gln Thr Glu Ile Gln Thr Val Asn Lys Gln Phe Pro Cys Glu Pro 325 330 335 Phe Lys Phe Leu Glu Pro Thr Leu Arg Leu Glu Tyr Cys Glu Ala Leu 340 345 350 Ala Met Leu Arg Glu Ala Gly Val Glu Met Asp Asp Glu Glu Asp Leu 355 360 365 Ser Thr Pro Asn Glu Lys Leu Leu Gly Arg Leu Val Lys Glu Lys Tyr 370 375 380 Asp Thr Asp Phe Tyr Val Leu Asp Lys Tyr Pro Leu Ala Val Arg Pro 385 390 395 400 Phe Tyr Thr Met Pro Asp Pro Arg Asn Pro Lys Gln Ser Asn Ser Tyr 405 410 415 Asp Met Phe Met Arg Gly Glu Glu Ile Leu Ser Gly Ala Gln Arg Ile 420 425 430 His Asp Pro Gln Leu Leu Thr Glu Arg Ala Leu His His Gly Ile Asp 435 440 445 Leu Glu Lys Ile Lys Ala Tyr Ile Asp Ser Phe Arg Phe Gly Ala Pro 450 455 460 Pro His Ala Gly Gly Gly Ile Gly Leu Glu Arg Val Thr Met Leu Phe 465 470 475 480 Leu Gly Leu His Asn Val Arg Gln Thr Ser Met Phe Pro Arg Asp Pro 485 490 495 Lys Arg Leu Thr Pro 500 25 500 PRT Homo sapiens 25 Met Pro Ser Ala Thr Gln Arg Lys Ser Gln Glu Lys Pro Arg Glu Ile 1 5 10 15 Met Asp Ala Ala Glu Asp Tyr Ala Lys Glu Arg Tyr Gly Ile Ser Ser 20 25 30 Met Ile Gln Ser Gln Glu Lys Pro Asp Arg Val Leu Val Arg Val Arg 35 40 45 Asp Leu Thr Ile Gln Lys Ala Asp Glu Val Val Trp Val Arg Ala Arg 50 55 60 Val His Thr Ser Arg Ala Lys Gly Lys Gln Cys Phe Leu Val Leu Arg 65 70 75 80 Gln Gln Gln Phe Asn Val Gln Ala Leu Val Ala Val Gly Asp His Ala 85 90 95 Ser Lys Gln Met Val Lys Phe Ala Ala Asn Ile Asn Lys Glu Ser Ile 100 105 110 Val Asp Val Glu Gly Val Val Arg Lys Val Asn Gln Lys Ile Gly Ser 115 120 125 Cys Thr Gln Gln Asp Val Glu Leu His Val Gln Lys Ile Tyr Val Ile 130 135 140 Ser Leu Ala Glu Pro Arg Leu Pro Leu Gln Leu Asp Asp Ala Val Arg 145 150 155 160 Pro Glu Gln Glu Gly Glu Glu Glu Gly Arg Ala Thr Val Asn Gln Asp 165 170 175 Thr Arg Leu Asp Asn Arg Val Ile Asp Leu Arg Thr Ser Thr Ser Gln 180 185 190 Ala Val Phe Arg Leu Gln Ser Gly Ile Cys His Leu Phe Arg Glu Thr 195 200 205 Leu Ile Asn Lys Gly Phe Val Glu Ile Gln Thr Pro Lys Ile Ile Ser 210 215 220 Ala Ala Ser Glu Gly Gly Ala Asn Val Phe Thr Val Ser Tyr Phe Lys 225 230 235 240 Asn Asn Ala Tyr Leu Ala Gln Ser Pro Gln Leu Tyr Lys Gln Met Cys 245 250 255 Ile Cys Ala Asp Phe Glu Lys Val Phe Ser Ile Gly Pro Val Phe Arg 260 265 270 Ala Glu Asp Ser Asn Thr His Arg His Leu Thr Glu Phe Val Gly Leu 275 280 285 Asp Ile Glu Met Ala Phe Asn Tyr His Tyr His Glu Val Met Glu Glu 290 295 300 Ile Ala Asp Thr Met Val Gln Ile Phe Lys Gly Leu Gln Glu Arg Phe 305 310 315 320 Gln Thr Glu Ile Gln Thr Val Asn Lys Gln Phe Pro Cys Glu Pro Phe 325 330 335 Lys Phe Leu Glu Pro Thr Leu Arg Leu Glu Tyr Cys Glu Ala Leu Ala 340 345 350 Met Leu Arg Glu Ala Gly Val Glu Met Gly Asp Glu Asp Asp Leu Ser 355 360 365 Thr Pro Asn Glu Lys Leu Leu Gly His Leu Val Lys Glu Lys Tyr Asp 370 375 380 Thr Asp Phe Tyr Ile Leu Asp Lys Tyr Pro Leu Ala Val Arg Pro Phe 385 390 395 400 Tyr Thr Met Pro Asp Pro Arg Asn Pro Lys Gln Ser Lys Ser Tyr Asp 405 410 415 Met Phe Met Arg Gly Glu Glu Ile Leu Ser Gly Ala Gln Arg Ile His 420 425 430 Asp Pro Gln Leu Leu Thr Glu Arg Ala Leu His His Gly Asn Asp Leu 435 440 445 Glu Lys Ile Lys Ala Tyr Ile Asp Ser Phe Arg Phe Gly Ala Pro Pro 450 455 460 His Ala Gly Gly Gly Ile Gly Leu Glu Arg Val Thr Met Leu Phe Leu 465 470 475 480 Gly Leu His Asn Val Arg Gln Thr Ser Met Phe Pro Arg Asp Pro Lys 485 490 495 Arg Leu Thr Pro 500 26 459 PRT Haemophilus influenzae Rd 26 Met Leu Lys Ile Phe Asn Thr Leu Thr Arg Glu Lys Glu Ile Phe Lys 1 5 10 15 Pro Ile His Glu Asn Lys Val Gly Met Tyr Val Cys Gly Val Thr Val 20 25 30 Tyr Asp Leu Cys His Ile Gly His Gly Arg Thr Phe Val Cys Phe Asp 35 40 45 Val Ile Ala Arg Tyr Leu Arg Ser Leu Gly Tyr Asp Leu Thr Tyr Val 50 55 60 Arg Asn Ile Thr Asp Val Asp Asp Lys Ile Ile Lys Arg Ala Leu Glu 65 70 75 80 Asn Lys Glu Thr Cys Asp Gln Leu Val Asp Arg Met Val Gln Glu Met 85 90 95 Tyr Lys Asp Phe Asp Ala Leu Asn Val Leu Arg Pro Asp Phe Glu Pro 100 105 110 Arg Ala Thr His His Ile Pro Glu Ile Ile Glu Ile Val Glu Lys Leu 115 120 125 Ile Lys Arg Gly His Ala Tyr Val Ala Asp Asn Gly Asp Val Met Phe 130 135 140 Asp Val Glu Ser Phe Lys Glu Tyr Gly Lys Leu Ser Arg Gln Asp Leu 145 150 155 160 Glu Gln Leu Gln Ala Gly Ala Arg Ile Glu Ile Asn Glu Ile Lys Lys 165 170 175 Asn Pro Met Asp Phe Val Leu Trp Lys Met Ser Lys Glu Asn Glu Pro 180 185 190 Ser Trp Ala Ser Pro Trp Gly Ala Gly Arg Pro Gly Trp His Ile Glu 195 200 205 Cys Ser Ala Met Asn Cys Lys Gln Leu Gly Glu Tyr Phe Asp Ile His 210 215 220 Gly Gly Gly Ser Asp Leu Met Phe Pro His His Glu Asn Glu Ile Ala 225 230 235 240 Gln Ser Cys Cys Ala His Gly Gly Gln Tyr Val Asn Tyr Trp Ile His 245 250 255 Ser Gly Met Ile Met Val Asp Lys Glu Lys Met Ser Lys Ser Leu Gly 260 265 270 Asn Phe Phe Thr Ile Arg Asp Val Leu Asn His Tyr Asn Ala Glu Ala 275 280 285 Val Arg Tyr Phe Leu Leu Thr Ala His Tyr Arg Ser Gln Leu Asn Tyr 290 295 300 Ser Glu Glu Asn Leu Asn Leu Ala Gln Gly Ala Leu Glu Arg Leu Tyr 305 310 315 320 Thr Ala Leu Arg Gly Thr Asp Gln Ser Ala Val Ala Phe Gly Gly Glu 325 330 335 Asn Phe Val Ala Thr Phe Arg Glu Ala Met Asp Asp Asp Phe Asn Thr 340 345 350 Pro Asn Ala Leu Ser Val Leu Phe Glu Met Ala Arg Glu Ile Asn Lys 355 360 365 Leu Lys Thr Glu Asp Val Glu Lys Ala Asn Gly Leu Ala Ala Arg Leu 370 375 380 Arg Glu Leu Gly Ala Ile Leu Gly Leu Leu Gln Gln Glu Pro Glu Lys 385 390 395 400 Phe Leu Gln Ala Gly Ser Asn Asp Asp Glu Val Ala Lys Ile Glu Ala 405 410 415 Leu Ile Lys Gln Arg Asn Glu Ala Arg Thr Ala Lys Asp Trp Ser Ala 420 425 430 Ala Asp Ser Ala Arg Asn Glu Leu Thr Ala Met Gly Ile Val Leu Glu 435 440 445 Asp Gly Pro Asn Gly Thr Thr Trp Arg Lys Gln 450 455 27 461 PRT Escherichia coli 27 Met Leu Lys Ile Phe Asn Thr Leu Thr Arg Gln Lys Glu Glu Phe Lys 1 5 10 15 Pro Ile His Ala Gly Glu Val Gly Met Tyr Val Cys Gly Ile Thr Val 20 25 30 Tyr Asp Leu Cys His Ile Gly His Gly Arg Thr Phe Val Ala Phe Asp 35 40 45 Val Val Ala Arg Tyr Leu Arg Phe Leu Gly Tyr Lys Leu Lys Tyr Val 50 55 60 Arg Asn Ile Thr Asp Ile Asp Asp Lys Ile Ile Lys Arg Ala Asn Glu 65 70 75 80 Asn Gly Glu Ser Phe Val Ala Met Val Asp Arg Met Ile Ala Glu Met 85 90 95 His Lys Asp Phe Asp Ala Leu Asn Ile Leu Arg Pro Asp Met Glu Pro 100 105 110 Arg Ala Thr His His Ile Ala Glu Ile Ile Glu Leu Thr Glu Gln Leu 115 120 125 Ile Ala Lys Gly His Ala Tyr Val Ala Asp Asn Gly Asp Val Met Phe 130 135 140 Asp Val Pro Thr Asp Pro Thr Tyr Gly Val Leu Ser Arg Gln Asp Leu 145 150 155 160 Asp Gln Leu Gln Ala Gly Ala Arg Val Asp Val Val Asp Asp Lys Arg 165 170 175 Asn Pro Met Asp Phe Val Leu Trp Lys Met Ser Lys Glu Gly Glu Pro 180 185 190 Ser Trp Pro Ser Pro Trp Gly Ala Gly Arg Pro Gly Trp His Ile Glu 195 200 205 Cys Ser Ala Met Asn Cys Lys Gln Leu Gly Asn His Phe Asp Ile His 210 215 220 Gly Gly Gly Ser Asp Leu Met Phe Pro His His Glu Asn Glu Ile Ala 225 230 235 240 Gln Ser Thr Cys Ala His Asp Gly Gln Tyr Val Asn Tyr Trp Met His 245 250 255 Ser Gly Met Val Met Val Asp Arg Glu Lys Met Ser Lys Ser Leu Gly 260 265 270 Asn Phe Phe Thr Val Arg Asp Val Leu Lys Tyr Tyr Asp Ala Glu Thr 275 280 285 Val Arg Tyr Phe Leu Met Ser Gly His Tyr Arg Ser Gln Leu Asn Tyr 290 295 300 Ser Glu Glu Asn Leu Lys Gln Ala Arg Ala Ala Val Glu Arg Leu Tyr 305 310 315 320 Thr Ala Leu Arg Gly Thr Asp Lys Thr Val Ala Pro Ala Gly Gly Glu 325 330 335 Ala Phe Glu Ala Arg Phe Ile Glu Ala Met Asp Asp Asp Phe Asn Thr 340 345 350 Pro Glu Ala Tyr Ser Val Leu Phe Asp Met Ala Arg Glu Val Asn Arg 355 360 365 Leu Lys Ala Glu Asp Met Ala Ala Ala Asn Ala Met Ala Ser His Leu 370 375 380 Arg Lys Leu Ser Ala Val Leu Gly Leu Leu Glu Gln Glu Pro Glu Ala 385 390 395 400 Phe Leu Gln Ser Gly Ala Gln Ala Asp Asp Ser Glu Val Ala Glu Ile 405 410 415 Glu Ala Leu Ile Gln Gln Arg Leu Asp Ala Arg Lys Ala Lys Asp Trp 420 425 430 Ala Ala Ala Asp Ala Ala Arg Asp Arg Leu Asn Glu Met Gly Ile Val 435 440 445 Leu Glu Asp Gly Pro Gln Gly Thr Thr Trp Arg Arg Lys 450 455 460 28 377 PRT Synechocystis sp. 28 Met Lys Asn Cys Glu Asn Asp His Arg Phe Thr Thr Val Ser Ser Gly 1 5 10 15 Lys Ala Trp Gly Gln Leu His Arg Phe Pro Ser Leu Ile Lys Phe Asn 20 25 30 Phe Ala His Arg Ser Thr Thr Ala Met Asp Lys Pro Arg Ile Leu Ser 35 40 45 Gly Val Gln Pro Thr Gly Asn Leu His Leu Gly Asn Tyr Leu Gly Ala 50 55 60 Ile Arg Ser Trp Val Glu Gln Gln Gln His Tyr Asp Asn Phe Phe Cys 65 70 75 80 Val Val Asp Leu His Ala Ile Thr Val Pro His Asn Pro Gln Thr Leu 85 90 95 Ala Gln Asp Thr Leu Thr Ile Ala Ala Leu Tyr Leu Ala Cys Gly Ile 100 105 110 Asp Leu Gln Tyr Ser Thr Ile Phe Val Gln Ser His Val Ala Ala His 115 120 125 Ser Glu Leu Ala Trp Leu Leu Asn Cys Val Thr Pro Leu Asn Trp Leu 130 135 140 Glu Arg Met Ile Gln Phe Lys Glu Lys Ala Val Lys Gln Gly Glu Asn 145 150 155 160 Val Ser Val Gly Leu Leu Asp Tyr Pro Val Leu Met Ala Ala Asp Ile 165 170 175 Leu Leu Tyr Asp Ala Asp Lys Val Pro Val Gly Glu Asp Gln Lys Gln 180 185 190 His Leu Glu Leu Thr Arg Asp Ile Val Ile Arg Ile Asn Asp Lys Phe 195 200 205 Gly Arg Glu Asp Ala Pro Val Leu Lys Leu Pro Glu Pro Leu Ile Arg 210 215 220 Lys Glu Gly Ala Arg Val Met Ser Leu Ala Asp Gly Thr Lys Lys Met 225 230 235 240 Ser Lys Ser Asp Glu Ser Glu Leu Ser Arg Ile Asn Leu Leu Asp Pro 245 250 255 Pro Glu Met Ile Lys Lys Lys Val Lys Lys Cys Lys Thr Asp Pro Gln 260 265 270 Arg Gly Leu Trp Phe Asp Asp Pro Glu Arg Pro Glu Cys His Asn Leu 275 280 285 Leu Thr Leu Tyr Thr Leu Leu Ser Asn Gln Thr Lys Glu Ala Val Ala 290 295 300 Gln Glu Cys Ala Glu Met Gly Trp Gly Gln Phe Lys Pro Leu Leu Thr 305 310 315 320 Glu Thr Ala Ile Ala Ala Leu Glu Pro Ile Gln Ala Lys Tyr Ala Glu 325 330 335 Ile Leu Ala Asp Arg Gly Glu Leu Asp Arg Ile Ile Gln Ala Gly Asn 340 345 350 Ala Lys Ala Ser Gln Thr Ala Gln Gln Thr Leu Ala Arg Val Arg Asp 355 360 365 Ala Leu Gly Phe Leu Ala Pro Pro Tyr 370 375 29 419 PRT Bacillus caldotenax 29 Met Asp Leu Leu Ala Glu Leu Gln Trp Arg Gly Leu Val Asn Gln Thr 1 5 10 15 Thr Asp Glu Asp Gly Leu Arg Lys Leu Leu Asn Glu Glu Arg Val Thr 20 25 30 Leu Tyr Cys Gly Phe Asp Pro Thr Ala Asp Ser Leu His Ile Gly Asn 35 40 45 Leu Ala Ala Ile Leu Thr Leu Arg Arg Phe Gln Gln Ala Gly His Arg 50 55 60 Pro Ile Ala Leu Val Gly Gly Ala Thr Gly Leu Ile Gly Asp Pro Ser 65 70 75 80 Gly Lys Lys Ser Glu Arg Thr Leu Asn Ala Lys Glu Thr Val Glu Ala 85 90 95 Trp Ser Ala Arg Ile Lys Glu Gln Leu Gly Arg Phe Leu Asp Phe Glu 100 105 110 Ala Asp Gly Asn Pro Ala Lys Ile Lys Asn Asn Tyr Asp Trp Ile Gly 115 120 125 Pro Leu Asp Val Ile Thr Phe Leu Arg Asp Val Gly Lys His Phe Ser 130 135 140 Val Asn Tyr Met Met Ala Lys Glu Ser Val Gln Ser Arg Ile Glu Thr 145 150 155 160 Gly Ile Ser Phe Thr Glu Phe Ser Tyr Met Met Leu Gln Ala Tyr Asp 165 170 175 Phe Leu Arg Leu Tyr Glu Thr Glu Gly Cys Arg Leu Gln Ile Gly Gly 180 185 190 Ser Asp Gln Trp Gly Asn Ile Thr Ala Gly Leu Glu Leu Ile Arg Lys 195 200 205 Thr Lys Gly Glu Ala Arg Ala Phe Gly Leu Thr Ile Pro Leu Val Thr 210 215 220 Lys Ala Asp Gly Thr Lys Phe Gly Lys Thr Glu Ser Gly Thr Ile Trp 225 230 235 240 Leu Asp Lys Glu Lys Thr Ser Pro Tyr Glu Phe Tyr Gln Phe Trp Ile 245 250 255 Asn Thr Asp Asp Arg Asp Val Ile Arg Tyr Leu Lys Tyr Phe Thr Phe 260 265 270 Leu Ser Lys Glu Glu Ile Glu Ala Leu Glu Gln Glu Leu Arg Glu Ala 275 280 285 Pro Glu Lys Arg Ala Ala Gln Lys Ala Leu Ala Glu Glu Val Thr Lys 290 295 300 Leu Val His Gly Glu Glu Ala Leu Arg Gln Ala Ile Arg Ile Ser Glu 305 310 315 320 Ala Leu Phe Ser Gly Asp Ile Ala Asn Leu Thr Ala Ala Glu Ile Glu 325 330 335 Gln Gly Phe Lys Asp Val Pro Ser Phe Val His Glu Gly Gly Asp Val 340 345 350 Pro Leu Val Glu Leu Leu Val Ser Ala Gly Ile Ser Pro Ser Lys Arg 355 360 365 Gln Ala Arg Glu Asp Ile Gln Asn Gly Ala Ile Tyr Val Asn Gly Glu 370 375 380 Arg Leu Gln Asp Val Gly Ala Ile Leu Thr Ala Glu His Arg Leu Glu 385 390 395 400 Gly Arg Phe Thr Val Ile Arg Arg Gly Lys Lys Lys Tyr Tyr Leu Ile 405 410 415 Arg Tyr Ala

Claims

What is claimed is:

1. An isolated nucleic acid fragment encoding an aspartyl-tRNA synthetase comprising a member selected from the group consisting of:

(a) an isolated nucleic acid fragment encoding an amino acid sequence that is at least 80% identical to the amino acid sequence set forth in a member selected from the group consisting of SEQ ID NO: 2, 4, 6 and 8;

(b) an isolated nucleic acid fragment that is complementary to (a).

2. The isolated nucleic acid fragment of claim 1 wherein nucleic acid fragment is a functional RNA.

3. The isolated nucleic acid fragment of claim 1 wherein the nucleotide sequence of the fragment comprises the sequence set forth in a member selected from the group consisting of SEQ ID NO: 1, 3, 5 and 7.

4. A chimeric gene comprising the nucleic acid fragment of claim 1 operably linked to suitable regulatory sequences.

5. A transformed host cell comprising the chimeric gene of claim 4.

6. An aspartyl-tRNA synthetase polypeptide comprising all or a substantial portion of the amino acid sequence set forth in a member selected from the group consisting of SEQ ID NO: 2., 4, 6 and 8

7. An isolated nucleic acid fragment encoding a cysteinyl-tRNA synthetase comprising a member selected from the group consisting of:

(a) an isolated nucleic acid fragment encoding an amino acid sequence that is at least 80% identical to the amino acid sequence set forth in a member selected from the group consisting of SEQ ID NO: 10, 12 and 14;

(b) an isolated nucleic acid fragment that is complementary to (a).

8. The isolated nucleic acid fragment of claim 7 wherein nucleic acid fragment is a functional RNA.

9. The isolated nucleic acid fragment of claim 7 wherein the nucleotide sequence of the fragment comprises the sequence set forth in a member selected from the group consisting of SEQ ID NO: 9, 11 and 13.

10. A chimeric gene comprising the nucleic acid fragment of claim 7 operably linked to suitable regulatory sequences.

11. A transformed host cell comprising the chimeric gene of claim 10.

12. A cysteinyl-tRNA synthetase polypeptide comprising all or a substantial portion of the amino acid sequence set forth in a member selected from the group consisting of SEQ ID NO: 10, 12 and 14.

13. An isolated nucleic acid fragment encoding a tryptophanyl-tRNA synthetase comprising a member selected from the group consisting of:

(a) an isolated nucleic acid fragment encoding an amino acid sequence that is at least 80% identical to the amino acid sequence set forth in a member selected from the group consisting of SEQ ID NO: 16, 18 and 20;

(b) an isolated nucleic acid fragment that is complementary to (a).

14. The isolated nucleic acid fragment of claim 13 wherein nucleic acid fragment is a functional RNA.

15. The isolated nucleic acid fragment of claim 13 wherein the nucleotide sequence of the fragment comprises the sequence set forth in a member selected from the group consisting of SEQ ID NO: 15, 17 and 19.

16. A chimeric gene comprising the nucleic acid fragment of claim 13 operably linked to suitable regulatory sequences.

17. A transformed host cell comprising the chimeric gene of claim 16.

18. A tryptophanyl-tRNA synthetase polypeptide comprising all or a substantial portion of the amino acid sequence set forth in a member selected from the group consisting of SEQ ID NO: 16, 18 and 20.

19. An isolated nucleic acid fragment encoding a tyrosyl-tRNA synthetase comprising a member selected from the group consisting of:

(a) an isolated nucleic acid fragment encoding an amino acid sequence that is at least 80% identical to the amino acid sequence set forth in SEQ ID NO: 22;

(b) an isolated nucleic acid fragment that is complementary to (a).

20. The isolated nucleic acid fragment of claim 19 wherein nucleic acid fragment is a functional RNA.

21. The isolated nucleic acid fragment of claim 19 wherein the nucleotide sequence of the fragment comprises the sequence set forth in SEQ ID NO: 2 1.

22. A chimeric gene comprising the nucleic acid fragment of claim 19 operably linked to suitable regulatory sequences.

23. A transformed host cell comprising the chimeric gene of claim 22.

24. A tyrosyl-tRNA synthetase polypeptide comprising all or a substantial portion of the amino acid sequence set forth in SEQ ID NO: 22.

25. A method of altering the level of expression of an aminoacyl-tRNA synthetase in a host cell comprising:

(a) transforming a host cell with the chimeric gene of any of claims 4, 10, 16 and 22; and

(b) growing the transformed host cell produced in step (a) under conditions that are suitable for expression of the chimeric gene

wherein expression of the chimeric gene results in production of altered levels of an aminoacyl-tRNA synthetase in the transformed host cell.

26. A method of obtaining a nucleic acid fragment encoding all or a substantial portion of the amino acid sequence encoding an aminoacyl-tRNA synthetase comprising:

(a) probing a cDNA or genomic library with the nucleic acid fragment of any of claims 1, 7,13 and 19;

(b) identifying a DNA clone that hybridizes with the nucleic acid fragment of any of claims 1, 7, 13 and 19;

(c) isolating the DNA clone identified in step (b); and

(d) sequencing the cDNA or genomic fragment that comprises the clone isolated in step (c)

wherein the sequenced nucleic acid fragment encodes all or a substantial portion of the amino acid sequence encoding an aminoacyl-tRNA synthetase.

27. A method of obtaining a nucleic acid fragment encoding a substantial portion of an amino acid sequence encoding an aminoacyl-tRNA synthetase comprising:

(a) synthesizing an oligonucleotide primer corresponding to a portion of the sequence set forth in any of SEQ ID NOs: 1, 3, 5, 7, 9, 11, 13, 15, 17, 19 and 21; and

(b) amplifying a cDNA insert present in a cloning vector using the oligonucleotide primer of step (a) and a primer representing sequences of the cloning vector

wherein the amplified nucleic acid fragment encodes a substantial portion of an amino acid sequence encoding an aminoacyl-tRNA synthetase.

28. The product of the method of claim 26.

29. The product of the method of claim 27.

30. A method for evaluating at least one compound for its ability to inhibit the activity of an aminoacyl-tRNA synthetase, the method comprising the steps of:

(a) transforming a host cell with a chimeric gene comprising a nucleic acid fragment encoding an aminoacyl-tRNA synthetase, operably linked to suitable regulatory sequences;

(b) growing the transformed host cell under conditions that are suitable for expression of the chimeric gene wherein expression of the chimeric gene results in production of the aminoacyl-tRNA synthetase encoded by the operably linked nucleic acid fragment in the transformed host cell;

(c) optionally purifying the aminoacyl-tRNA synthetase expressed by the transformed host cell;

(d) treating the aminoacyl-tRNA synthetase with a compound to be tested; and

(e) comparing the activity of the aminoacyl-tRNA synthetase that has been treated with a test compound to the activity of an untreated aminoacyl-tRNA synthetase,

thereby selecting compounds with potential for inhibitory activity.