US20010000344A1 - Prenyl transferase inhibitors - Google Patents

Prenyl transferase inhibitors Download PDF

Info

Publication number
US20010000344A1
US20010000344A1 US09/728,397 US72839700A US2001000344A1 US 20010000344 A1 US20010000344 A1 US 20010000344A1 US 72839700 A US72839700 A US 72839700A US 2001000344 A1 US2001000344 A1 US 2001000344A1
Authority
US
United States
Prior art keywords
compound
pharmaceutically acceptable
lower alkyl
acceptable salt
aryl
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Granted
Application number
US09/728,397
Other versions
US6313109B2 (en
Inventor
Sun Kim
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Ipsen Pharma SAS
Original Assignee
Ipsen Bioscience Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Priority claimed from US08/675,439 external-priority patent/US5767274A/en
Application filed by Ipsen Bioscience Inc filed Critical Ipsen Bioscience Inc
Priority to US09/728,397 priority Critical patent/US6313109B2/en
Assigned to BIOMEASURE, INCORPORATED reassignment BIOMEASURE, INCORPORATED ASSIGNMENT OF ASSIGNORS INTEREST (SEE DOCUMENT FOR DETAILS). Assignors: KIM, SUN H.
Assigned to SOCIETE DE CONSEILS DE RECHERCHES ET D'APPLICATIONS SCIENTIFIQUES, S.A.S. reassignment SOCIETE DE CONSEILS DE RECHERCHES ET D'APPLICATIONS SCIENTIFIQUES, S.A.S. ASSIGNMENT OF ASSIGNORS INTEREST (SEE DOCUMENT FOR DETAILS). Assignors: BIOMEASURE INCORPORATED
Assigned to SOCIETE DE CONSEILS DE RECHERCHES ET D'APPLICATIONS SCIENTIFIQUES, S.A.S. reassignment SOCIETE DE CONSEILS DE RECHERCHES ET D'APPLICATIONS SCIENTIFIQUES, S.A.S. DOCUMENT PREVIOUSLY RECORDED AT REEL 11288 FRAME 0413 CONTAINED ERRORS IN PROPERTY NUMBERS( LIST INCORRECT PROPERTY NUMBERS) 09-728387, DOCUMENT RE-RECORDED TO CORRECT ERRORS ON STATED REEL. Assignors: BIOMEASURE, INCORPORATED
Publication of US20010000344A1 publication Critical patent/US20010000344A1/en
Application granted granted Critical
Publication of US6313109B2 publication Critical patent/US6313109B2/en
Assigned to IPSEN PHARMA S.A.S. reassignment IPSEN PHARMA S.A.S. CHANGE OF NAME (SEE DOCUMENT FOR DETAILS). Assignors: SOCIETE DE CONSEILS DE RECHERCHES ET D'APPLICATIONS SCIENTIFIQUES, S.A.S.
Anticipated expiration legal-status Critical
Expired - Fee Related legal-status Critical Current

Links

Classifications

    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D513/00Heterocyclic compounds containing in the condensed system at least one hetero ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for in groups C07D463/00, C07D477/00 or C07D499/00 - C07D507/00
    • C07D513/02Heterocyclic compounds containing in the condensed system at least one hetero ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for in groups C07D463/00, C07D477/00 or C07D499/00 - C07D507/00 in which the condensed system contains two hetero rings
    • C07D513/04Ortho-condensed systems
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P13/00Drugs for disorders of the urinary system
    • A61P13/08Drugs for disorders of the urinary system of the prostate
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P35/00Antineoplastic agents
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P43/00Drugs for specific purposes, not provided for in groups A61P1/00-A61P41/00
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P9/00Drugs for disorders of the cardiovascular system
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P9/00Drugs for disorders of the cardiovascular system
    • A61P9/10Drugs for disorders of the cardiovascular system for treating ischaemic or atherosclerotic diseases, e.g. antianginal drugs, coronary vasodilators, drugs for myocardial infarction, retinopathy, cerebrovascula insufficiency, renal arteriosclerosis
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07CACYCLIC OR CARBOCYCLIC COMPOUNDS
    • C07C323/00Thiols, sulfides, hydropolysulfides or polysulfides substituted by halogen, oxygen or nitrogen atoms, or by sulfur atoms not being part of thio groups
    • C07C323/50Thiols, sulfides, hydropolysulfides or polysulfides substituted by halogen, oxygen or nitrogen atoms, or by sulfur atoms not being part of thio groups containing thio groups and carboxyl groups bound to the same carbon skeleton
    • C07C323/51Thiols, sulfides, hydropolysulfides or polysulfides substituted by halogen, oxygen or nitrogen atoms, or by sulfur atoms not being part of thio groups containing thio groups and carboxyl groups bound to the same carbon skeleton having the sulfur atoms of the thio groups bound to acyclic carbon atoms of the carbon skeleton
    • C07C323/60Thiols, sulfides, hydropolysulfides or polysulfides substituted by halogen, oxygen or nitrogen atoms, or by sulfur atoms not being part of thio groups containing thio groups and carboxyl groups bound to the same carbon skeleton having the sulfur atoms of the thio groups bound to acyclic carbon atoms of the carbon skeleton with the carbon atom of at least one of the carboxyl groups bound to nitrogen atoms
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D217/00Heterocyclic compounds containing isoquinoline or hydrogenated isoquinoline ring systems
    • C07D217/22Heterocyclic compounds containing isoquinoline or hydrogenated isoquinoline ring systems with hetero atoms or with carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, e.g. ester or nitrile radicals, directly attached to carbon atoms of the nitrogen-containing ring
    • C07D217/26Carbon atoms having three bonds to hetero atoms with at the most one bond to halogen
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D241/00Heterocyclic compounds containing 1,4-diazine or hydrogenated 1,4-diazine rings
    • C07D241/02Heterocyclic compounds containing 1,4-diazine or hydrogenated 1,4-diazine rings not condensed with other rings
    • C07D241/04Heterocyclic compounds containing 1,4-diazine or hydrogenated 1,4-diazine rings not condensed with other rings having no double bonds between ring members or between ring members and non-ring members
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D285/00Heterocyclic compounds containing rings having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by groups C07D275/00 - C07D283/00
    • C07D285/36Seven-membered rings
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D285/00Heterocyclic compounds containing rings having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by groups C07D275/00 - C07D283/00
    • C07D285/38Eight-membered rings
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D339/00Heterocyclic compounds containing rings having two sulfur atoms as the only ring hetero atoms
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D417/00Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group C07D415/00
    • C07D417/02Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group C07D415/00 containing two hetero rings
    • C07D417/06Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group C07D415/00 containing two hetero rings linked by a carbon chain containing only aliphatic carbon atoms
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D417/00Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group C07D415/00
    • C07D417/14Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group C07D415/00 containing three or more hetero rings
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D513/00Heterocyclic compounds containing in the condensed system at least one hetero ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for in groups C07D463/00, C07D477/00 or C07D499/00 - C07D507/00
    • C07D513/12Heterocyclic compounds containing in the condensed system at least one hetero ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for in groups C07D463/00, C07D477/00 or C07D499/00 - C07D507/00 in which the condensed system contains three hetero rings
    • C07D513/14Ortho-condensed systems
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K5/00Peptides containing up to four amino acids in a fully defined sequence; Derivatives thereof
    • C07K5/04Peptides containing up to four amino acids in a fully defined sequence; Derivatives thereof containing only normal peptide links
    • C07K5/06Dipeptides
    • C07K5/06008Dipeptides with the first amino acid being neutral
    • C07K5/06017Dipeptides with the first amino acid being neutral and aliphatic
    • C07K5/0606Dipeptides with the first amino acid being neutral and aliphatic the side chain containing heteroatoms not provided for by C07K5/06086 - C07K5/06139, e.g. Ser, Met, Cys, Thr
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K5/00Peptides containing up to four amino acids in a fully defined sequence; Derivatives thereof
    • C07K5/04Peptides containing up to four amino acids in a fully defined sequence; Derivatives thereof containing only normal peptide links
    • C07K5/08Tripeptides
    • C07K5/0802Tripeptides with the first amino acid being neutral
    • C07K5/0804Tripeptides with the first amino acid being neutral and aliphatic
    • C07K5/081Tripeptides with the first amino acid being neutral and aliphatic the side chain containing O or S as heteroatoms, e.g. Cys, Ser
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K38/00Medicinal preparations containing peptides

Definitions

  • a prenyl transferase inhibitor can block growth of Ras-dependent tumors in nude mice (Kohl, N E, et al., Proc. Nat'l Acad. Sci. USA 91:9141-9145 (1994)).
  • prenyl transferase inhibitors with selectivity over non-transformed epithelial cells (Sepp-Lorenzino, I, et al., Cancer Research, 55:5302-5309 (1995)).
  • Inhibiting farnesylation has been disclosed as a method of treating hepatitis delta virus infection, (Casey, P, et al., WO 97/31641).
  • the invention features a compound of formula I or formula II
  • R 2 is thio lower alkyl
  • each of R 3 and R 5 independently, is CH 2 or C(O);
  • R 4 is substituted or unsubstituted thio lower alkyl
  • R 6 is a residue of a natural or synthetic ⁇ -amino acid
  • R 7 is a residue of a natural or synthetic ⁇ -amino acid
  • R 8 is OH or lower alkoxy, or, together with R 7 , forms homoserinelactone;
  • each of R 9 , R 10 and R 11 is H or lower alkyl
  • R 12 is substituted or unsubstituted cycloalkyl, cycloalkyl lower alkyl, aryl, aryl lower alkyl, heterocycle, or heterocycle lower alkyl, wherein said substituent is lower alkyl, aryl, halo, lower alkoxy, or C(O)—R 7 —R 8 ;
  • R 13 is lower alkyl, aryl, or aryl lower alkyl
  • R 18 is H or, together with R 9 , forms CH 2 CH 2 ;
  • R 4 is unsubstituted thio lower alkyl, the free thio group of R 2 and the free thio group of R 4 may form a disulfide bond;
  • the present invention is directed to a process for preparing a compound of Formula I or Formula II.
  • the compound is of formula I where R 6 is —N(R 14 )CH(R 15 )C(O)—, where R 14 is H or lower alkyl, and R 15 is substituted or unsubstituted lower alkyl, aryl, aryl lower alkyl, heterocycle, or heterocycle lower alkyl where said substituent is lower alkyl, halo, or lower alkoxy, or where R 15 , together with NR 14 C attached thereto, form heterocycle; and R 7 is —N(R 16 )CH(R 17 )C(O)— where R 16 is H or lower alkyl, and R 17 is (CH 2 ) m S(O) n CH 3 or substituted or unsubstituted lower alkyl, thio lower alkyl, where said substituent is C(O)N(R 10 )(R 11 ), m is 1-6, n is 0-2, and R 8 is OH or lower alkoxy.
  • R 2 can be CH 2 SH;
  • R 4 can be C(CH 3 ) 2 SH or CH 2 SH wherein the free thio group of R 2 and the free thio group of R 4 form a disulfide bond;
  • R 15 together with NR 14 C attached thereto, can form heterocycle;
  • R 16 can be H; and
  • R 17 can be (CH 2 ) 2 S(O) n CH 3 ; furthermore, R 1 can be NH 2 ;
  • R 3 can be CH 2 ;
  • R 5 can be CO; and
  • R 8 can be OH or OCH 3 .
  • R 2 can be (CH 2 )SH;
  • R 4 can be C(CH 2 ) 2 SCH 2 NHCOCH 3 or CH 2 SCH 2 NHCOCH 3 ;
  • R 15 together with NR 14 C attached thereto, can form heterocycle;
  • R 16 can be H, and
  • R 17 can be (CH 2 ) 2 S(O) n CH 3 ; furthermore, R 1 is NH 2 ;
  • R 3 is CH 2 ;
  • R 5 is C(O); and
  • R 8 is OH or OCH 3 .
  • the compound is of formula II, wherein R 2 is CH 2 SH; R 4 is C(CH 3 ) 2 SH or CH 2 SH wherein the free thio group of R 2 and the free thio group of R 4 form a disulfide bond; R 12 is substituted or unsubstituted aryl or is aryl lower alkyl, and R 18 is H.
  • R 1 can be NH 2 ;
  • R 3 can be CH 2 ;
  • R 5 can be C(O);
  • R 9 can be H; and
  • R 12 can be substituted or unsubstituted phenyl or benzyl, wherein said substituent is lower alkyl or halo.
  • R 2 is (CH 2 )SH; R 4 is C(CH 2 ) 2 SCH 2 NHCOCH 3 or CH 2 SCH 2 NHCOCH 3 ; and R 12 is subsitituted or unsubstituted aryl or aryl lower alkyl.
  • R 1 can be NH 2 ; R 3 can be CH 2 ; R 5 can be CO; R 9 can be H; and R 12 can be substituted or unsubstituted phenyl or benzyl, wherein said substituent is lower alkyl or halo.
  • Examples of the present invention include the following:
  • the invention features a compound of formula III or formula IV
  • Y is CH 2 or C(O);
  • R 1 , R 2 , R 3 , and R 4 each is, independently, H, lower alkyl, optionally substituted arylalkyl, optionally substituted alkenyl, (C 1 -C 18 )-aliphatic acyl, or arylacyl;
  • R 5 and R 6 each is, independently, H or CH 3 ;
  • R 9 and R 10 each is independently selected from the group consisting of H, lower alkyl, and C 3 -C 6 cycloalkyl;
  • Ar is optionally substituted aryl or optionally substituted heterocycle
  • n is 0 or an integer from 1 to 4;
  • each substituent is, independently, aryl, heterocycle, halogen, OR 9 , NR 9 R 10 , CN, NO 2 , CF 3 , or lower alkyl, said lower alkyl optionally substituted with C 1 -C 4 alkoxy, NR 9 R 10 , C 3 -C 6 cycloalkyl, or OH;
  • the present invention is directed to a process for preparing a compound of Formula III or Formula IV.
  • a preferred group of compounds of Formula III or Formula IV include the following:
  • the invention features a compound of formula V:
  • Ar is optionally substituted aryl or optionally substituted heterocycle, wherein each substituent is independently selected from the group consisting of aryl, heterocycle, halogen, OR 9 , NR 9 R 10 , CN, NO 2 , CF 3 , and lower alkyl, said lower alkyl optionally substituted with (C 1 -C 4 )-alkoxy, NR 9 R 10 , C 3 -C 6 cycloalkyl, or OH;
  • R 1 and R 2 each is, independently, CH 2 or C(O);
  • R 3 and R 4 each is, independently, H or CH 3 ;
  • R 5 , R 6 , R 7 , and R 8 each is independently selected from the group consisting of H, or an optionally substituted moiety selected from the group consisting of (C 1 -C 8 )-alkyl, alkenyl, alkynyl, aryl, and heterocycle;
  • optionally substituted moiety is optionally substituted by one or more substituents independently selected from the group consisting of (C 3 -C 6 ) -cycloalkyl, optionally further substituted aryl, and optionally further substituted heterocycle,
  • optionally further substituted aryl and heterocycle are optionally substituted by one or more substituents independently selected from the group consisting of (C 1 -C 4 )-alkyl, halogen, (CH 2 ) m OR 9 , and (CH 2 ) m NR R 10 ;
  • R 9 and R 10 each is, independently, H lower alkyl or (C 3 -C 6 ) cycloalkyl
  • R 11 is H or NH 2 ;
  • m is 0 or an integer from 1 to 4;
  • n 0, 1, or 2;
  • the present invention is directed to a process for preparing a compound of Formula V.
  • a preferred group of compounds of Formula V includes the following:
  • the compounds of the present invention may have asymmetric centers and occur as racemates, racemic mixtures, and as individual diastereomers, with all possible isomers, including optical isomers, being included in the present invention.
  • isomers including optical isomers
  • lower alkyl is intended to include saturated aliphatic hydrocarbon groups having 1-6 carbon atoms. Examples of lower alkyl groups include methyl, ethyl, propyl, isopropyl, butyl, isobutyl, sec-butyl, t-butyl, and the like.
  • alkyl refers to saturated aliphatic hydrocarbon groups having up to 18 carbon atoms.
  • alkenyl and alkynyl refer to unsaturated aliphatic hydrocarbon groups having 2-18 carbon atoms and from 1 to 5 double or triple bonds.
  • Lower alkoxy include those groups having 1-6 carbons.
  • lower alkoxy groups include methoxy, ethoxy, propoxy, isopropoxy, and the like. All alkyl, alkenyl, alkynyl and alkoxy groups may be branched or straight chained, but are noncyclic.
  • cycloalkyl means a 3-7 carbon ring. Examples of cycloalkyl groups include cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, and cycloseptyl.
  • halo means chloro, bromo, iodo, or fluoro.
  • heterocycle lower alkyl substituted, respectively, with one to three heterocycle, thio, cycloalkyl, and aryl groups.
  • aryl is intended to include any stable monocyclic, bicyclic, or tricyclic carbon ring(s) of up to 7 members in each ring, wherein at least one ring is aromatic.
  • aryl groups include phenyl, naphthyl, anthracenyl, biphenyl, tetrahydronaphthyl, indanyl, phenanthrenyl, and the like.
  • heterocycle represents a stable 5- to 7-membered monocyclic or stable 8- to 11-membered bicyclic or stable 11 to 15-membered tricyclic heterocyclic ring which is either saturated or unsaturated, and which consists of carbon atoms and from one to four heteroatoms selected from the group consisting of N, O, and S, and including any bicyclic group in which any of the above-defined heterocyclic rings is fused to a benzene ring.
  • the heterocyclic ring may be attached at any heteroatom or carbon atom which results in the creation of a stable structure.
  • heterocyclic elements include, but are not limited to, azepinyl, benzimidazolyl, benzisoxazolyl, benzofurazanyl, benzopyranyl, benzothiopyranyl, benzofuryl, benzothiazolyl, benzothienyl, benzoxazolyl, chromanyl, cinnolinyl, dihydrobenzofuryl, dihydrobenzothienyl, dihydrobenzothiopyranyl, dihydrobenzothio-pyranyl sulfone, furyl, imidazolidinyl, imidazolinyl, imidazolyl, indolinyl, indolyl, isochromanyl, isoindolinyl, isoquinolinyl, isothiazolidinyl, isothiazolyl, isothiazolidinyl, morpholinyl, naphthyridinyl, oxadiazolyl
  • a group When a group is substituted, it may be substituted one to four times.
  • the various substituents may be attached to carbon atoms or to heteroatoms (e.g., S, N, or O).
  • the term “residue of an ⁇ -amino acid” stands for an ⁇ -amino acid residue which is either a natural ⁇ -amino acid which is found in nature (e.g., cysteinyl, methionyl, phenylalaninyl, leucinyl, etc.) or a synthetic ⁇ -amino acid which is not found in nature (e.g., neurleucyl or the residue of 1,2,3,4-tetrahydroisoquinoline-3-carboxylic acid or penicillamine, etc.).
  • the compounds of this invention can be provided in the form of pharmaceutically acceptable salts.
  • Acceptable salts include, but are not limited to acid addition salts of inorganic acids such as acetate, maleate, fumarate, tartrate, succinate, citrate, lactate, methanesulfonate, p-toluenesulfonate, pamoate, salicylate, oxalate, and stearate.
  • salts formed from bases such as sodium or potassium hydroxide.
  • bases such as sodium or potassium hydroxide.
  • the invention features a method of inhibiting prenyl transferases (e.g., farnesyl transferase or geranylgeranyl transferase) in a subject, e.g., a mammal such as a human, by administering to the subject a therapeutically effective amount of a compound of formula I, formula II, formula III, formula IV, or formula V.
  • prenyl transferases e.g., farnesyl transferase or geranylgeranyl transferase
  • the present invention also covers a method of treating restenosis or tissue proliferative diseases (i.e., tumor) in a subject by administering to the subject a therapeutically effective amount of a compound or its salt.
  • tissue proliferative disease examples include both those associated with benign (e.g., non-malignant) cell proliferation such as fibrosis, benign prostatic hyperplasia, atherosclerosis, and restenosis, and those associated with malignant cell proliferation, such as cancer (e.g., ras-mutant tumors).
  • benign e.g., non-malignant
  • malignant cell proliferation such as cancer (e.g., ras-mutant tumors).
  • cancer e.g., ras-mutant tumors
  • treatable tumors include breast, colon, pancreas, prostate, lung, ovarian, epidermal, and hematopoietic cancers (Sepp-Lorenzino, I, et al., Cancer Research 55:5302 (1995)).
  • a therapeutically effective amount of a compound of this invention and a pharmaceutically acceptable carrier substance together form a pharmaceutical composition (e.g., a pill, tablet, capsule, or liquid) for administration (e.g., orally, intravenously, transdermally, or subcutaneously) to a subject in need of the compound.
  • a pharmaceutical composition e.g., a pill, tablet, capsule, or liquid
  • administration e.g., orally, intravenously, transdermally, or subcutaneously
  • the pill, tablet, or capsule can be coated with a substance capable of protecting the composition from the gastric acid or intestinal enzymes in the subject's stomach for a period of time sufficient to allow the composition to pass undigested into the subject's small intestine.
  • the compounds of the present invention may be administered in a dosage range of about 0.0001 to 200 mg/kg/day, preferably 0.01 to 100 mg/kg/day.
  • a dose of a compound of the present invention for treating the above-mentioned diseases or disorders varies depending upon the manner of administration, the age and the body weight of the subject, and the condition of the subject to be treated, and ultimately will be decided by the attending physician or veterinarian. Such an amount of the compound as determined by the attending physician or veterinarian is referred to herein as a “therapeutically effective amount.”
  • a compound of the present invention can be tested for farnesyl transferase inhibiting activity by testing said compound in a farnesyl transferase in vitro assay, such as the assay described below.
  • Farnesyl transferase activity is assayed by [ 3 H] farnesylation of recombinant human H-Ras protein wild type, using microplate and filtration method. Incubation mixture contains, in a total volume of 25 ⁇ l: 50 mM Tris HCl (pH 7.5), 5 mM dithiothreitol, 20 ⁇ M ZnCl 2 , 40 mM MgCl 2 , 0.6 ⁇ M [ 3 H] farnesyl pyrophosphate (22.3 Ci/mmol), 4 ⁇ M H-Ras and 10 ⁇ g of farnesyl transferase from human brain cytosol.
  • Test compounds are added in adequate solvent and incubations start by addition of farnesyl transferase. After approximately 60 minutes at approximately 37° C., the reaction is stopped by addition of 100 ⁇ l of 10% HCl in ethanol and allowed to incubate approximately 15 minutes at approximately 37° C., then 150 ⁇ l of absolute ethanol are added and incubation mixture is filtered on Unifilter GF/B microplates and washed 6 times with ethanol. After addition of 50 ⁇ l of Microscint 0, plates were counted on a Packard Top Count scintillation counter.
  • Geranylgeranyl transferase activity is assayed by the same method, but using 4 ⁇ M human recombinant H-Ras CVLL type, 0.6 ⁇ M [ 3 H] geranylgeranyl-pyrophosphate (19.3 Ci/mmmol) and 100 ⁇ g of geranylgeranyl transferase from human brain.
  • the compounds of the invention were prepared using standard solution phase methodologies, e.g., as described in Greenstein, et al., Chemistry of the Amino Acids, Vols. 1-3 (J. Wiley, New York (1961)); and M. Bodanszky, et al., The Practice of Peptide Synthesis (Springer-Verlag, 1984)).
  • the condensation reactions were carried out in an inert organic solvent, e.g., dimethylformide, dichloromethane, tetrahydrofuran, benzene or acetonitrile, using a suitable mild condensing agent, e.g., 1-(3-dimethylaminopropyl)-3-ethylcarbodiimide-HCl (EDC), 0-benzotriazol-1-yl-N,N,N′,N′-tetramethyluronium hexafluorophosphate (HBTU), and optionally a catalyst, e.g., 1-hydroxybenzotriazole (HOBT).
  • EDC 1-(3-dimethylaminopropyl)-3-ethylcarbodiimide-HCl
  • HBTU 0-benzotriazol-1-yl-N,N,N′,N′-tetramethyluronium hexafluorophosphate
  • a catalyst e.g., 1-
  • Cyclic disulfide formation was carried out under high dilute condition using using various oxidizing agents (e.g. oxygen, iodine, immobilized oxidizing agent like EKATHIOXTM resin, (Ekagen Corp., Menlo Park, Calif., etc.)), in various solvents (e.g. water, alcohol, acetonitrile, tetrahydrofuran (THF), acetic acid, chloroform, etc.).
  • oxidizing agents e.g. oxygen, iodine, immobilized oxidizing agent like EKATHIOXTM resin, (Ekagen Corp., Menlo Park, Calif., etc.
  • solvents e.g. water, alcohol, acetonitrile, tetrahydrofuran (THF), acetic acid, chloroform, etc.
  • sodium triacetoxyborohydride (Na(OAc) 3 BH), sodium cyanoborohydride or pyridine-borane complex, in solvents such as dichloromethane, dichloroethane, methanol or dimethylformamide, etc.
  • the intermediate and final products were isolated and purified by standard methods, e.g., column chromatography or HPLC.
  • N-t-Butoxycarbonyl-S-acetamidomethyl-penicillaminyl-1,2,3,4-tetrahydro-3[S]-isoquinolinecarbonyl methionine methylester (3.3 g) was treated with 50% TFA in CH 2 Cl 2 (20 ml) containing 1 ml triethylsilane for about 30 minutes Volatile substances were removed in vacuo to dryness. Trace of TFA was removed by co-evaporation with toluene several times. The TFA salt was dissolved in CHCl 3 (30 ml), treated with excess triethylamine, washed with water, dried (MgSO 4 ), and solvent was evaporated in vacuo to give free base.
  • Step B The product from Step B (8.7 g) was dissolved in ethanol (35 ml) treated with Pd(OH) 2 -charcoal (0.8 g) and acetic acid (3 ml). Hydrogenation was carried out under 30 p.s.i. overnight. The reaction mixture was filtered through a diatomaceous earth pad and the solvent was removed in vacuo to dryness.

Landscapes

  • Chemical & Material Sciences (AREA)
  • Organic Chemistry (AREA)
  • Health & Medical Sciences (AREA)
  • Medicinal Chemistry (AREA)
  • General Health & Medical Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • General Chemical & Material Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Nuclear Medicine, Radiotherapy & Molecular Imaging (AREA)
  • Pharmacology & Pharmacy (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Animal Behavior & Ethology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Public Health (AREA)
  • Veterinary Medicine (AREA)
  • Biochemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Biophysics (AREA)
  • Genetics & Genomics (AREA)
  • Molecular Biology (AREA)
  • Urology & Nephrology (AREA)
  • Cardiology (AREA)
  • Heart & Thoracic Surgery (AREA)
  • Vascular Medicine (AREA)
  • Pharmaceuticals Containing Other Organic And Inorganic Compounds (AREA)
  • Plural Heterocyclic Compounds (AREA)
  • Acyclic And Carbocyclic Compounds In Medicinal Compositions (AREA)
  • Nitrogen And Oxygen Or Sulfur-Condensed Heterocyclic Ring Systems (AREA)
  • Medicines That Contain Protein Lipid Enzymes And Other Medicines (AREA)
  • Organic Low-Molecular-Weight Compounds And Preparation Thereof (AREA)
  • Peptides Or Proteins (AREA)
  • Other In-Based Heterocyclic Compounds (AREA)
  • Nitrogen- Or Sulfur-Containing Heterocyclic Ring Compounds With Rings Of Six Or More Members (AREA)

Abstract

A family of compounds capable of inhibiting the activity of prenyl transferases. The compounds are covered by the four following formulas
Figure US20010000344A1-20010419-C00001
Each of the R groups is defined in the disclosure.

Description

    CROSS-REFERENCE TO RELATED APPLICATION
  • 1. This application is a continuation-in-part of U.S. patent application 08/675,439, filed Jun. 28, 1996.
  • BACKGROUND OF THE INVENTION
  • 2. The Ras family of proteins are important in the signal transduction pathway modulating cell growth. The protein is produced in the ribosome, released into the cytosol, and post-translationally modified. The first step in the series of post-translational modifications is the alkylation of Cys168 with farnesyl or geranylgeranyl pyrophosphate in a reaction catalyzed by prenyl transferase enzymes such as farnesyl transferase and geranylgeranyl transferase (Hancock, J F, et al., Cell 57:1167-1177 (1989)). Subsequently, the three C-terminal amino acids are cleaved (Gutierrez, L., et al., EMBO J. 8:1093-1098 (1989)), and the terminal Cys is converted to a methyl ester (Clark, S., et al., Proc. Nat'l Acad. Sci. (USA) 85:4643-4647 (1988)). Some forms of Ras are also reversibly palmitoylated on cysteine residues immediately N-terminal to Cys168 (Buss, J E, et al., Mol. Cell. Biol. 6:116-122 (1986)). It is believed that these modifications increase the hydrophobicity of the C-terminal region of Ras, causing it to localize at the surface of the cell membrane. Localization of Ras to the cell membrane is necessary for signal transduction (Willumsen, B M, et al., Science 310:583-586 (1984)).
  • 3. Oncogenic forms of Ras are observed in a relatively large number of cancers including over 50 percent of colon cancers and over 90 percent of pancreatic cancers (Bos, J L, Cancer Research 49:4682-4689 (1989)). These observations suggest that intervention in the function of Ras mediated signal transduction may be useful in the treatment of cancer.
  • 4. Previously, it has been shown that the C-terminal tetrapeptide of Ras has the “CAAX” motif (wherein C is cysteine, A is an aliphatic amino acid, and X is any amino acid). Tetrapeptides having this structure have been shown to be inhibitors of prenyl transferases (Reiss, et al., Cell 62:81-88 (1990)). Poor potency of these early farnesyl transferase inhibitors has prompted the search for new inhibitors with more favorable pharmacokinetic behavior (James, G L, et al., Science 260:1937-1942 (1993); Kohl, N E, et al., Proc. Nat'l Acad. Sci. USA 91:9141-9145 (1994); deSolms, S J, et al., J. Med. Chem. 38:3967-3971 (1995); Nagasu, T, et al., Cancer Research 55:5310-5314 (1995); Lerner, E C, et al., J. Biol. Chem. 270:26802-26806 (1995); Lerner, E C, et al., J. Biol. Chem. 270:26770 (1995); and James, et al., Proc. Natl. Acad. Sci. USA 93:4454 (1996)).
  • 5. Recently, it has been shown that a prenyl transferase inhibitor can block growth of Ras-dependent tumors in nude mice (Kohl, N E, et al., Proc. Nat'l Acad. Sci. USA 91:9141-9145 (1994)). In addition, it has been shown that over 70 percent of a large sampling of tumor cell lines are inhibited by prenyl transferase inhibitors with selectivity over non-transformed epithelial cells (Sepp-Lorenzino, I, et al., Cancer Research, 55:5302-5309 (1995)). Inhibiting farnesylation has been disclosed as a method of treating hepatitis delta virus infection, (Casey, P, et al., WO 97/31641).
  • SUMMARY OF THE INVENTION
  • 6. In one aspect, the invention features a compound of formula I or formula II
    Figure US20010000344A1-20010419-C00002
  • 7. wherein
  • 8. R1 is N(R10) (R11);
  • 9. R2 is thio lower alkyl;
  • 10. each of R3 and R5, independently, is CH2 or C(O);
  • 11. R4 is substituted or unsubstituted thio lower alkyl,
  • 12. wherein said substituent is CH2NHC(O)R13 and said substituent is attached to said thio group;
  • 13. R6 is a residue of a natural or synthetic α-amino acid;
  • 14. R7 is a residue of a natural or synthetic α-amino acid;
  • 15. R8 is OH or lower alkoxy, or, together with R7, forms homoserinelactone;
  • 16. each of R9, R10 and R11, independently, is H or lower alkyl;
  • 17. R12 is substituted or unsubstituted cycloalkyl, cycloalkyl lower alkyl, aryl, aryl lower alkyl, heterocycle, or heterocycle lower alkyl, wherein said substituent is lower alkyl, aryl, halo, lower alkoxy, or C(O)—R7—R8;
  • 18. R13 is lower alkyl, aryl, or aryl lower alkyl;
  • 19. R18 is H or, together with R9, forms CH2CH2;
  • 20. provided if R4 is unsubstituted thio lower alkyl, the free thio group of R2 and the free thio group of R4 may form a disulfide bond;
  • 21. or a pharmaceutically acceptable salt thereof.
  • 22. In another aspect, the present invention is directed to a process for preparing a compound of Formula I or Formula II.
  • 23. In one embodiment, the compound is of formula I where R6 is —N(R14)CH(R15)C(O)—, where R14 is H or lower alkyl, and R15 is substituted or unsubstituted lower alkyl, aryl, aryl lower alkyl, heterocycle, or heterocycle lower alkyl where said substituent is lower alkyl, halo, or lower alkoxy, or where R15, together with NR14C attached thereto, form heterocycle; and R7 is —N(R16)CH(R17)C(O)— where R16 is H or lower alkyl, and R17 is (CH2)mS(O)nCH3 or substituted or unsubstituted lower alkyl, thio lower alkyl, where said substituent is C(O)N(R10)(R11), m is 1-6, n is 0-2, and R8 is OH or lower alkoxy. In this embodiment, R2 can be CH2SH; R4 can be C(CH3)2SH or CH2SH wherein the free thio group of R2 and the free thio group of R4 form a disulfide bond; R15, together with NR14C attached thereto, can form heterocycle; R16 can be H; and R17 can be (CH2)2S(O)nCH3; furthermore, R1 can be NH2; R3 can be CH2; R5 can be CO; and R8 can be OH or OCH3. In the same embodiment, R2 can be (CH2)SH; R4 can be C(CH2)2SCH2NHCOCH3 or CH2SCH2NHCOCH3; R15, together with NR14C attached thereto, can form heterocycle; R16 can be H, and R17 can be (CH2)2S(O)nCH3; furthermore, R1 is NH2; R3 is CH2; R5 is C(O); and R8 is OH or OCH3.
  • 24. In another embodiment, the compound is of formula II, wherein R2 is CH2SH; R4 is C(CH3)2SH or CH2SH wherein the free thio group of R2 and the free thio group of R4 form a disulfide bond; R12 is substituted or unsubstituted aryl or is aryl lower alkyl, and R18 is H. In this embodiment, R1 can be NH2; R3 can be CH2; R5 can be C(O); R9 can be H; and R12 can be substituted or unsubstituted phenyl or benzyl, wherein said substituent is lower alkyl or halo.
  • 25. In a still further embodiment, R2 is (CH2)SH; R4 is C(CH2)2SCH2NHCOCH3 or CH2SCH2NHCOCH3; and R12 is subsitituted or unsubstituted aryl or aryl lower alkyl. In this embodiment, R1 can be NH2; R3 can be CH2; R5 can be CO; R9 can be H; and R12 can be substituted or unsubstituted phenyl or benzyl, wherein said substituent is lower alkyl or halo.
  • 26. Examples of the present invention include the following:
    Figure US20010000344A1-20010419-C00003
  • 27. In another aspect, the invention features a compound of formula III or formula IV
    Figure US20010000344A1-20010419-C00004
  • 28. where
  • 29. Y is CH2 or C(O);
  • 30. R1, R2, R3, and R4, each is, independently, H, lower alkyl, optionally substituted arylalkyl, optionally substituted alkenyl, (C1-C18)-aliphatic acyl, or arylacyl;
  • 31. R5 and R6 each is, independently, H or CH3;
  • 32. R9 and R10 each is independently selected from the group consisting of H, lower alkyl, and C3-C6 cycloalkyl;
  • 33. Ar is optionally substituted aryl or optionally substituted heterocycle;
  • 34. n is 0 or an integer from 1 to 4;
  • 35. wherein each substituent is, independently, aryl, heterocycle, halogen, OR9, NR9R10, CN, NO2, CF3, or lower alkyl, said lower alkyl optionally substituted with C1-C4 alkoxy, NR9R10, C3-C6 cycloalkyl, or OH;
  • 36. or a pharmaceutically acceptable salt thereof.
  • 37. In still another aspect, the present invention is directed to a process for preparing a compound of Formula III or Formula IV.
  • 38. A preferred group of compounds of Formula III or Formula IV include the following:
    Figure US20010000344A1-20010419-C00005
  • 39. In yet another aspect, the invention features a compound of formula V:
    Figure US20010000344A1-20010419-C00006
  • 40. wherein
  • 41. Ar is optionally substituted aryl or optionally substituted heterocycle, wherein each substituent is independently selected from the group consisting of aryl, heterocycle, halogen, OR9, NR9R10, CN, NO2, CF3, and lower alkyl, said lower alkyl optionally substituted with (C1-C4)-alkoxy, NR9R10, C3-C6 cycloalkyl, or OH;
  • 42. R1 and R2 each is, independently, CH2 or C(O);
  • 43. R3 and R4 each is, independently, H or CH3;
  • 44. R5, R6, R7, and R8 each is independently selected from the group consisting of H, or an optionally substituted moiety selected from the group consisting of (C1-C8)-alkyl, alkenyl, alkynyl, aryl, and heterocycle;
  • 45. wherein said optionally substituted moiety is optionally substituted by one or more substituents independently selected from the group consisting of (C3-C6) -cycloalkyl, optionally further substituted aryl, and optionally further substituted heterocycle,
  • 46. wherein said optionally further substituted aryl and heterocycle are optionally substituted by one or more substituents independently selected from the group consisting of (C1-C4)-alkyl, halogen, (CH2)mOR9, and (CH2)mNR R10;
  • 47. R9 and R10 each is, independently, H lower alkyl or (C3-C6) cycloalkyl;
  • 48. R11 is H or NH2;
  • 49. m is 0 or an integer from 1 to 4;
  • 50. n is 0, 1, or 2;
  • 51. or a pharmaceutically acceptable salt thereof.
  • 52. In another aspect, the present invention is directed to a process for preparing a compound of Formula V.
  • 53. A preferred group of compounds of Formula V includes the following:
    Figure US20010000344A1-20010419-C00007
  • 54. The compounds of the present invention may have asymmetric centers and occur as racemates, racemic mixtures, and as individual diastereomers, with all possible isomers, including optical isomers, being included in the present invention. For simplicity, where no specific configuration is depicted in a structural formula, it is understood that all enantiomeric forms and mixtures thereof are represented.
  • 55. As used herein, “lower alkyl” is intended to include saturated aliphatic hydrocarbon groups having 1-6 carbon atoms. Examples of lower alkyl groups include methyl, ethyl, propyl, isopropyl, butyl, isobutyl, sec-butyl, t-butyl, and the like. The term “alkyl” refers to saturated aliphatic hydrocarbon groups having up to 18 carbon atoms. The terms “alkenyl” and “alkynyl” refer to unsaturated aliphatic hydrocarbon groups having 2-18 carbon atoms and from 1 to 5 double or triple bonds. “Lower alkoxy” groups include those groups having 1-6 carbons. Examples of lower alkoxy groups include methoxy, ethoxy, propoxy, isopropoxy, and the like. All alkyl, alkenyl, alkynyl and alkoxy groups may be branched or straight chained, but are noncyclic. The term “cycloalkyl” means a 3-7 carbon ring. Examples of cycloalkyl groups include cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, and cycloseptyl. The term “halo” means chloro, bromo, iodo, or fluoro. The terms “heterocycle lower alkyl,” “thio lower alkyl,” “cycloalkyl lower alkyl”, and “lower alkyl,” are substituted, respectively, with one to three heterocycle, thio, cycloalkyl, and aryl groups.
  • 56. As used herein, “aryl” is intended to include any stable monocyclic, bicyclic, or tricyclic carbon ring(s) of up to 7 members in each ring, wherein at least one ring is aromatic. Examples of aryl groups include phenyl, naphthyl, anthracenyl, biphenyl, tetrahydronaphthyl, indanyl, phenanthrenyl, and the like.
  • 57. The term heterocycle, as used herein, represents a stable 5- to 7-membered monocyclic or stable 8- to 11-membered bicyclic or stable 11 to 15-membered tricyclic heterocyclic ring which is either saturated or unsaturated, and which consists of carbon atoms and from one to four heteroatoms selected from the group consisting of N, O, and S, and including any bicyclic group in which any of the above-defined heterocyclic rings is fused to a benzene ring. The heterocyclic ring may be attached at any heteroatom or carbon atom which results in the creation of a stable structure. Examples of such heterocyclic elements include, but are not limited to, azepinyl, benzimidazolyl, benzisoxazolyl, benzofurazanyl, benzopyranyl, benzothiopyranyl, benzofuryl, benzothiazolyl, benzothienyl, benzoxazolyl, chromanyl, cinnolinyl, dihydrobenzofuryl, dihydrobenzothienyl, dihydrobenzothiopyranyl, dihydrobenzothio-pyranyl sulfone, furyl, imidazolidinyl, imidazolinyl, imidazolyl, indolinyl, indolyl, isochromanyl, isoindolinyl, isoquinolinyl, isothiazolidinyl, isothiazolyl, isothiazolidinyl, morpholinyl, naphthyridinyl, oxadiazolyl, 2-oxoazepinyl, 2-oxopiperazinyl, 2-oxopiperidinyl, 2-oxopyrrolidinyl, piperidyl, piperazinyl, pyridyl, pyridyl N-oxide, quinoxalinyl, tetrahydrofuryl, tetrahydroisoquinolinyl, tetrahydro-quinolinyl, thiamorpholinyl, thiamorpholinyl sulfoxide, thiazolyl, thiazolinyl, thiazolidinyl, thienofuryl, thienothienyl, thienyl, and the like.
  • 58. When a group is substituted, it may be substituted one to four times. The various substituents may be attached to carbon atoms or to heteroatoms (e.g., S, N, or O).
  • 59. As used herein, the term “residue of an α-amino acid” stands for an α-amino acid residue which is either a natural α-amino acid which is found in nature (e.g., cysteinyl, methionyl, phenylalaninyl, leucinyl, etc.) or a synthetic α-amino acid which is not found in nature (e.g., neurleucyl or the residue of 1,2,3,4-tetrahydroisoquinoline-3-carboxylic acid or penicillamine, etc.).
  • 60. The compounds of this invention can be provided in the form of pharmaceutically acceptable salts. Acceptable salts include, but are not limited to acid addition salts of inorganic acids such as acetate, maleate, fumarate, tartrate, succinate, citrate, lactate, methanesulfonate, p-toluenesulfonate, pamoate, salicylate, oxalate, and stearate. Also within the scope of the present invention, where applicable, are salts formed from bases such as sodium or potassium hydroxide. For further examples of pharmaceutically acceptable salts see, “Pharmaceutical Salts,” J. Pharm. Sci. 66:1 (1977).
  • 61. In another aspect, the invention features a method of inhibiting prenyl transferases (e.g., farnesyl transferase or geranylgeranyl transferase) in a subject, e.g., a mammal such as a human, by administering to the subject a therapeutically effective amount of a compound of formula I, formula II, formula III, formula IV, or formula V. In particular, the present invention also covers a method of treating restenosis or tissue proliferative diseases (i.e., tumor) in a subject by administering to the subject a therapeutically effective amount of a compound or its salt. Examples of a tissue proliferative disease include both those associated with benign (e.g., non-malignant) cell proliferation such as fibrosis, benign prostatic hyperplasia, atherosclerosis, and restenosis, and those associated with malignant cell proliferation, such as cancer (e.g., ras-mutant tumors). Examples of treatable tumors include breast, colon, pancreas, prostate, lung, ovarian, epidermal, and hematopoietic cancers (Sepp-Lorenzino, I, et al., Cancer Research 55:5302 (1995)).
  • 62. A therapeutically effective amount of a compound of this invention and a pharmaceutically acceptable carrier substance (e.g., magnesium carbonate, lactose, or a phospholipid with which the therapeutic compound can form a micelle) together form a pharmaceutical composition (e.g., a pill, tablet, capsule, or liquid) for administration (e.g., orally, intravenously, transdermally, or subcutaneously) to a subject in need of the compound. The pill, tablet, or capsule can be coated with a substance capable of protecting the composition from the gastric acid or intestinal enzymes in the subject's stomach for a period of time sufficient to allow the composition to pass undigested into the subject's small intestine.
  • 63. The compounds of the present invention may be administered in a dosage range of about 0.0001 to 200 mg/kg/day, preferably 0.01 to 100 mg/kg/day. A dose of a compound of the present invention for treating the above-mentioned diseases or disorders varies depending upon the manner of administration, the age and the body weight of the subject, and the condition of the subject to be treated, and ultimately will be decided by the attending physician or veterinarian. Such an amount of the compound as determined by the attending physician or veterinarian is referred to herein as a “therapeutically effective amount.”
  • 64. Also contemplated within the scope of the invention are a method of preparing the compounds of formula I, formula II, formula III, formula IV, and formula V, and the novel chemical intermediates used in these syntheses as described herein.
  • 65. Other features and advantages of the present invention will be apparent from the detailed description of the invention and from the claims.
  • DETAILED DESCRIPTION OF THE INVENTION
  • 66. It is believed that one skilled in the art can, based on the description herein, utilize the present invention to its fullest extent. The following specific embodiments are, therefore, to be construed as merely illustrative, and not limitative of the remainder of the disclosure in any way whatsoever.
  • 67. A compound of the present invention can be tested for farnesyl transferase inhibiting activity by testing said compound in a farnesyl transferase in vitro assay, such as the assay described below.
  • 68. Unless defined otherwise, all technical and scientific terms used herein have the same meaning as commonly understood by one of ordinary skill in the art to which this invention belongs. Also, all publications, patent applications, patents, and other references mentioned herein are incorporated by reference.
  • 69. Farnesyl transferase activity is assayed by [3H] farnesylation of recombinant human H-Ras protein wild type, using microplate and filtration method. Incubation mixture contains, in a total volume of 25 μl: 50 mM Tris HCl (pH 7.5), 5 mM dithiothreitol, 20 μM ZnCl2, 40 mM MgCl2, 0.6 μM [3H] farnesyl pyrophosphate (22.3 Ci/mmol), 4 μM H-Ras and 10 μg of farnesyl transferase from human brain cytosol. Test compounds are added in adequate solvent and incubations start by addition of farnesyl transferase. After approximately 60 minutes at approximately 37° C., the reaction is stopped by addition of 100 μl of 10% HCl in ethanol and allowed to incubate approximately 15 minutes at approximately 37° C., then 150 μl of absolute ethanol are added and incubation mixture is filtered on Unifilter GF/B microplates and washed 6 times with ethanol. After addition of 50 μl of Microscint 0, plates were counted on a Packard Top Count scintillation counter. Geranylgeranyl transferase activity is assayed by the same method, but using 4 μM human recombinant H-Ras CVLL type, 0.6 μM [3H] geranylgeranyl-pyrophosphate (19.3 Ci/mmmol) and 100 μg of geranylgeranyl transferase from human brain.
  • 70. The following is a description of the synthesis of compounds 1, 4, 9. Compounds 2,3,5-8, 10-20 can be prepared in an analogous manner by a person of ordinary skill in the art using appropriate starting materials. Compounds 21, 28, 29, and 30 were prepared using the reactions summarized in reaction scheme I. Compound 22 was prepared using the reactions summarized in reaction schemes II and IV. Compounds 25, 26, and 27 were prepared using the reactions summarized in reaction scheme V. Compound 31 may be prepared using the reactions summarized in scheme III. Other compounds of the invention can be prepared in an analogous manner by a person of ordinary skill in the art using appropriate starting materials.
  • 71. The compounds of the invention were prepared using standard solution phase methodologies, e.g., as described in Greenstein, et al., Chemistry of the Amino Acids, Vols. 1-3 (J. Wiley, New York (1961)); and M. Bodanszky, et al., The Practice of Peptide Synthesis (Springer-Verlag, 1984)). The condensation reactions were carried out in an inert organic solvent, e.g., dimethylformide, dichloromethane, tetrahydrofuran, benzene or acetonitrile, using a suitable mild condensing agent, e.g., 1-(3-dimethylaminopropyl)-3-ethylcarbodiimide-HCl (EDC), 0-benzotriazol-1-yl-N,N,N′,N′-tetramethyluronium hexafluorophosphate (HBTU), and optionally a catalyst, e.g., 1-hydroxybenzotriazole (HOBT). The reaction temperature was maintained below room temperature (−15° C. to room temperature) in order to minimize side reactions. Cyclic disulfide formation was carried out under high dilute condition using using various oxidizing agents (e.g. oxygen, iodine, immobilized oxidizing agent like EKATHIOX™ resin, (Ekagen Corp., Menlo Park, Calif., etc.)), in various solvents (e.g. water, alcohol, acetonitrile, tetrahydrofuran (THF), acetic acid, chloroform, etc.). See, e.g., B. Kamber, et al., Helv. Chim. Acta, 63(96):899 (1980). Compounds where R8, together with R9, forms CH2CH2 can be made according to the methods of Williams, et al., J..Med. Chem. 39(7):1346 (1996), e.g., by starting with protected cysteine.
  • 72. 2-Alkylpiperazines were synthesized similarly according to the procedure described in Org. Prep. Proc. Int. 1990, 22, 761-768. Replacement of hydroxyl group by protected sulfur were carried out by Mitsunobu reactions. (Synthesis 1981, 1; Tet. Lett. 1981, 3119 etc.) The protected cysteinal was prepared according to the procedure put forth by O. P. Goel, et al., (Org. Syn. 1988, 67, 69-75). The reductive alkylation can be accomplished with various agents, e.g. sodium triacetoxyborohydride, (Na(OAc)3BH), sodium cyanoborohydride or pyridine-borane complex, in solvents such as dichloromethane, dichloroethane, methanol or dimethylformamide, etc.
  • 73. The intermediate and final products were isolated and purified by standard methods, e.g., column chromatography or HPLC.
    Figure US20010000344A1-20010419-C00008
    Figure US20010000344A1-20010419-C00009
    Figure US20010000344A1-20010419-C00010
    Figure US20010000344A1-20010419-C00011
    Figure US20010000344A1-20010419-C00012
  • EXAMPLE 1 Synthesis of N-[2-(R)-amino-3-mercaptopropyl]-L-penicillaminyl-1,2,3,4-tetrahydro-3(s)-isoquinoline carbonyl methionine methylester cyclic disulfide (Compound 1)
  • 74. a) N-t-Butoxycarbonyl-S-trityl-L-cysteinyl-N,O-dimethylamide
  • 75. To an ice-cooled solution of N-t-butoxycarbonyl-L-cysteine (8.0 g) and N,O-dimethylhydroxylamine hydrochloride (7.1 g) in 80 ml dimethylformide was added 4.2 ml diethylcyanophosphonate and 14.7 ml diisopropylethylamine, and after stirring at 0° C. for about 1 hour, the reaction mixture was allowed to room temperature overnight. Volatile substances were removed in vacuo to dryness, and the residue was partitioned between ethylacetate and water. Ethylacetate layer was washed with aqueous NaHCO3, water, and dried (MgSO4). Solvent was evaporated in vacuo to dryness, and the residue was chromatographed on silica gel (165 g) using CHCl3 as an eluant. Appropriate fractions were pooled, and solvent was removed in vacua to dryness. White foam 8.08 g TLC (silica gel: CHCl3/acetone=9:1 Rf=0.58).
  • 76. b) 2(R)-t-Butoxycarbonylamino-3-triphenylmethylmercaptopropanal
  • 77. To an ice-cooled solution of N-t-Butoxycarbonyl s-trityl-L-cysteinyl-N,O-dimethylamide (0.85 g) in 20 ml tetrahydrofuran (THF) was added dropwise 3 ml 1.0 M LiAH4 in THF under nitrogen atmosphere. After the mixture was stirred for about 30 minutes at 0° C., 1M KHSO4 was slowly added, and the resulting emulsion was filtered through diatomaceous earth pad and further washed with ethylacetate. After drying over anhydrous MgSO4, the solvent was removed in vacua to dryness resulting in 0.7 g of the above-titled compound TLC (silica gel; CHCl3/acetone=4:1; Rf=0.88).
  • 78. c) N-t-Butoxycarbonyl-S-acetamidomethylpenicillaminyl-1,2,3,4-tetrahydro-3(S)-isoquinolinecarbonyl-methionine methylester
  • 79. To an ice-cooled solution of N-t-butoxycarbonyl-L-1,2,3,4-tetrahydro-3(S)-isoquinoline (2.77 g) and L-methionine methylester hydrochloride (2.0 g), 1-hydroxybenzotriazole (HOBT) (1.37 g) and O-Benzotriazol-1-yl-N,N,N′,N′-tetramethyluronium hexafluorophosphate (HBTU) (3.87 g) in 30 ml dimethylformide was added 4.9 ml diisopropylethylamine (DIEA). After stirring at 0° C. for about 30 minutes, the reaction mixture was allowed to room temperature overnight. Volatile substances were evaporated in vacuo to dryness, and the residue was partitioned between EtOAc and water. EtOAc layer was washed with aqueous NaHCO3, water, and dried (MgSO4). Solvent was evaporated in vacuo to dryness. It was treated with 50% trifluoracetic acid in chloroform (40 ml) containing 4.8 ml triethylsilane for about 1 hour, and volatile substances were removed in vacuo to dryness. Trace of trifluoroacetic acid (TFA) was further evaporated with toluene. To the above L-1,2,3,4-tetrahydro-3(S)-isoquinolinecarbonyl methionine methylester TFA salt (2.2 g) in dichloromethane (20 ml) cooled to 0° C. was added 1.2 ml DIEA followed by a solution of HOBT (0.7 g), N-t-butoxycarbonyl-S-acetamidomethyl penicillin (1.6 g) in DMF (3 ml), and EDC (1.2 g). The mixture was stirred at 0° C. for about 30 minutes and then allowed to room temperature overnight. Volatile substances were removed in vacuo to dryness. The residue was partitioned between EtOAc and water. Ethylacetate layer was washed with aqueous NaHCO3, water, and then dried (MgSO4). Solvent was evaporated in vacuo to dryness to yield 3.3 g orange solid.
  • 80. d) L-[S-acetamidomethylpenicillaminyl-1,2,3,4-tetrahydro-3[S]-isoquinolinecarbonyl methionine methylester and its TFA salt
  • 81. N-t-Butoxycarbonyl-S-acetamidomethyl-penicillaminyl-1,2,3,4-tetrahydro-3[S]-isoquinolinecarbonyl methionine methylester (3.3 g) was treated with 50% TFA in CH2Cl2 (20 ml) containing 1 ml triethylsilane for about 30 minutes Volatile substances were removed in vacuo to dryness. Trace of TFA was removed by co-evaporation with toluene several times. The TFA salt was dissolved in CHCl3 (30 ml), treated with excess triethylamine, washed with water, dried (MgSO4), and solvent was evaporated in vacuo to give free base.
  • 82. e) N-[2(R)-(t-Butoxycarbonyl)amino-3-triphenylmethylmercaptopropyl]-L-[S-acetamidomethyl-penicillaminyl]-1,2,3,4-tetrahydro-3(S)-isoquinolinecarbonyl methionine methyl ester
  • 83. To a solution of 2(R)-t-butoxycarbonylamino-3-triphenyl methyl-mercapto-propanal (0.7 g) and L-[S-acetamido methylpenicillaminyl-1,2,3,4-tetrahydro-3(s)-isoquinolinecarbonyl methionine methylester (0.43 g) in CH2Cl2 (20 ml) containing 1% acetic acid was added triacetoxysodiumborohydride Na(OAc)3BH (360 mg) in one portion. After stirring for about 2 hours, the mixture was washed with water, 5% aqueous NaHCO3, water, and then dried (MgSO4). The solvent was evaporated in vacuo to dryness, and the residue was chromatographed on silica gel (50 g) using CHCl3/acetone (19:1 to 9:1) as eluants. Appropriate fractions were pooled and solvents were removed in vacuo to dryness resulting in a white foam (390 mg) of the above title compound. TLC (silica gel; CHCl3/acetone=4:1; Rf=0.4).
  • 84. f) N-[2(R)-(t-Butoxycarbonyl)amino-3-mercaptopropyl]-L-penicillaminyl]-1,2,3,4-tetrahydro-3(S)-isoquinoline carbonyl methionine methylester cyclic disulfide
  • 85. To a solution of N-[2(R)-(t-butoxycarbonyl)amino-3-triphenylmethylmercaptopropyl]-L-[S-acetamidomethyl-penicillaminyl]-1,2,3,4-tetrahydro-3(S)-isoquinoline carbonyl methionine methylester (500 mg) in 50 ml 90% aqueous MeOH was added dropwise a solution of iodine (250 mg) in methanol (MeOH) (10 ml). After stirring for about 1 hour, most of methanol was removed in vacuo to a small volume, diluted with water, and extracted with ethylacetate. The ethylacetate extract was washed with water, aqueous Na2S2O3, water, and then dried (MgSO4). The solvent was evaporated in vacuo to dryness resulting in 400 mg of the above title compound.
  • 86. g) N-[2-(R)-Amino-3-mercaptopropyl]-L-penicillaminyl-1,2,3,4-tetrahydro-3(S)-isoquinoline carbonyl methionine methylester cyclic disulfide
  • 87. Crude N-[2(R)-(t-butoxycarbonyl)amino-3-mercaptopropyl]-L-penicillaminyl]-1,2,3,4-tetrahydro-3(S)-isoquinoline carbonyl methionine methylester cyclic disulfide (400 mg) was treated with 90% trifluoroacetic acid (TFA) in water TFA/H2O (9:1) (10 ml) for about 30 minutes Volatile substances were removed in vacuo to dryness, and a trace of TFA was evaporated with toluene several times and triturated with hexane, decanted, and then dried. Crude product was subjected to preparative high performance liquid chromatography (HPLC) using C18 column and 0.1% TFA and CH3CN as mobile phase. Appropriate fractions were pooled, and solvents were removed giving the above title compound as a white solid (78 mg). M/e= 541.1.
  • EXAMPLE 2 Synthesis of N-[2-(R)-Amino-3-mercaptopropyl]-L-[s-acetamidomethyl-penicillaminyl]-1,2,3,4-tetrahydro-3(S)-isoquinoline carbonyl methionine (Compound 4)
  • 88. To a solution of N-[2(R)-(t-butoxycarbonyl)-amino-3-triphenylmethylmercaptopropyl]-L-[s-acetamidomethyl penicillaminyl]-1,2,3,4-tetrahydro-3(S)-isoquinolinecarbonyl methionine methylester (Example I e))(500 mg) in 10 MeOH (50 ml) was added 2 ml 2 N—NaOH. After 30 minutes, most of MeOH was removed in vacuo to a small volume, diluted with water, acidified with 5% aqueous citric acid, and extracted with ethylacetate. The ethylacetate extract was then dried (MgSO4). Solvent was evaporated in vacuo to dryness. The residue was treated with 50% TFA in CH2Cl2 containing triethylsilane (Et3SiH) (0.5 ml) for about 40 minutes Volatile substances were removed in dryness, and a trace of TFA was evaporated with toluene and then dried. Crude product was purified by preparative HPLC giving the above titled compound (100 mg) as a white solid. M/e=600.2.
  • EXAMPLE 3 Synthesis of N-[2-(R)-Amino-3-mercaptopropyl]-L-penicillaminyl]-2,3-dimethylanilide cyclic disulfide (Compound 9)
  • 89. a) [N-t-Butoxycarbonyl-S-acetamidomethyl]penicillaminyl-2,3-dimethylanilide
  • 90. To an ice-cooled solution of N-[t-butoxycarbonyl)-S-acetamidomethyl penicillamine (Bachem California, Torrance, Calif.) (0.64 g), 2,3-dimethylaniline (0.25 g), hydroxybenzotriazole (0.41 g) in dimethylformide (DMF)/CH2Cl2 (1:1, 20 ml) was added 1-(3-dimethylaminopropyl)-3-ethylcarbodiimide (EDC) (0.57 g). The mixture was stirred at 0-5° C. for about 30 minutes and then the temperature was slowly allowed to room temperature overnight. After evaporation of the solvents, the residue was partitioned between ethyl acetate (EtOAc) and water. EtOAc extract was washed with aqueous NaHCO3, water, and then dried (MgSO4). The solvent was evaporated in vacuo to dryness. The residue was chromatographed on silica gel (40 g) using CHCl3/acetone= 19:1 as eluants, appropriate fractions were pooled, and solvents were removed in vacuo to dryness giving 350 mg of the above titled compound. TLC (silica gel: CHCl3/acetone=4:1, Rf−0.77).
  • 91. b) L-[S-acetamidomethylpenicillaminyl-2,3-dimethyl anilide TFA salt
  • 92. [N-t-butoxycarbonyl-S-acetamidomethyl]-penicillaminyl-2,3-dimethylanilide was treated with 50% TFA in CH2Cl2 (20 ml) for about 30 minutes Volatile substances were removed in vacuo to dryness. Trace of TFA was removed by co-evaporation with toluene several times. The TFA salt was dissolved in CHCl3 (30 ml), treated with excess triethylamine, washed with water, dried (MgSO4), and solvent was evaporated in vacuo to give free base.
  • 93. c) N-[2(R)-(t-Butoxycarbonyl)amino-3-triphenylmethylmercapto propyl]-L-[S-acetamidomethylpenicillaminyl-2,3-dimethylamilide
  • 94. To a stirred solution of 2(R)-t-butoxycarbonylamino-3-triphenylmethylmercaptopropanal (0.5 g; Example 1b) and L-[S-acetamidomethylpenicillaminyl-2,3-dimethylanilide TFA salt (0.3 g) in MeOH containing 1% acetic acid (HOAc) (10 ml) was added portionwise NaCNBH3 (100 mg). The mixture was stirred at room temperature overnight. Most of the solvent was evaporated in vacuo to a small volume, which was partitioned between EtOAc and water. EtOAc layer was further washed with aqueous NaHCO3, water, and then dried (MgSO4). After evaporation of solvent, the residue was chromatographed on silica gel (30 g) using CHCl3-acetone (19:1 to 9:1) as eluants. Appropriate fractions were pooled, and solvents were evaporated in vacuo to dryness giving 360 mg of the above titled compound. TLC (silica gel: CHCl3/acetone=9:1, Rf=0.13.
  • 95. d) N-[2-(R)-Amino-3-mercaptopropyl]-L-penicillaminyl]-2,3-dimethylanilide cyclic disulfide
  • 96. To a stirred solution of N-[2(R)-(t-butoxycarbonyl) amino-3-triphenylmethylmercaptopropyl]-L-[S-acetamidomethyl penicillaminyl]-2,3-dimethylamilide (350 mg) in 50 ml 90% MeOH in water was added a solution of iodine (250 mg) in MeOH (5 ml). After 1 hour, most of the solvent was evaporated in vacuo to a small volume, diluted with water, extracted with EtOAc. EtoAc layer was washed with aqueous Na2S2O3, water, then dried (MgSO4). Solvent was removed in vacuo to dryness (220 mg), treated with 90% aqueous TFA (ml) for about 30 minutes, and volatile substances were removed in vacuo to dryness. Crude product was purified by preparative HPLC giving 62 mg of the above titled compound as a white solid. M/e=340.2.
  • EXAMPLE 4 Synthesis of 1-[2(R)-Amino-3-mercaptopropyl]-2(S)-2-mercaptoethyl)-4-(1-naphthoyl)-piperazine-1,2-cyclodisulfide, (Compound 28), 1-[2(R) -Amino-3-mercaptopropyl]-2(S)-2-mercaptoethyl)-4-(1-naphthoyl)-piperazine, (Compound 30), and Bis-1,1′-2,2′-[2(R)-amino-3-mercaptopropyl]-2(S)-[2-mercaptoethyl)-4-(1-naphthoyl)-piperazinetetrasulfide, (Compound 29)
  • 97. a) Synthesis of 1-Benzyl-3(S)-benzyloxycarbonylmethyl piperazine-2,5-dione
  • 98. To an ice-cooled solution of BOC-aspartic acid β-benzyl ester (10 g), hydroxybenzotriazole (HOBT, 4.2 g), and N-benzylglycine ethyl ester (6.4 g) in 80 ml CH2Cl2 was added a cold solution of dicyclohexylcarbodiimide (DCC, 7.1 g) in 20 ml CH2Cl2. The reaction was stirred for about 1 hour at 0-5° C., then overnight at room temperature. The precipitate was filtered off and the filtrate was evaporated in vacuo to dryness. The residue was partitioned between ethyl acetate and water. The organic layer was washed with 100 ml aqueous NaHCO3, water, then dried (MSO4) . Solvent was removed in vacuo to dryness to give 16 g. TLC (silica gel: CHCl3/acetone= 9:1, Rf=0.55).
  • 99. This was treated with 50% trifluoroacetic acid in CHCl3 (40 ml) for about 1 hour and the volatile substances were removed in vacuo to dryness. The residue was partitioned between ethyl acetate and saturated aqueous NaHCO3. The organic layer was then dried (MgSO4) and the solvent was evaporated in vacuo to give 10 g. TLC (silica gel, CHCl3/acetone=9:1, Rf=0.14).
  • 100. b) Synthesis of 4-Benzyl-1-tert-butoxycarbonyl-2(S) -(2-hydroxyethyl) piperazine
  • 101. To an ice-cooled solution of the product from Step A (9.73 g) in 200 ml tetrahydrofuran (THF) was added portion wise a 50% mineral dispersion of lithium aluminum hydride (12.5 g) under a nitrogen atmosphere. The reaction mixture was refluxed overnight. After cooling in an ice bath, saturated aqueous Na2SO4 was added dropwise to decompose excess LAH and the white slurry in THF was filtered through a diatomaceous earth pad. The filtrate was concentrated in vacuo to dryness and the residue was dissolved in dichloromethane (55 mg), treated with di-tert-butyl dicarbonate (5.9 g), and stirred for about 1 hour. Aqueous saturated NaHCO3 (25 ml) was added and stirred for about 2 hours. The organic layer was washed with saturated sodium chloride and dried (MgSO4). After evaporation of solvent, the residue was chromatographed on silica gel (160 g) using CHCl3/MeOH (19:1) as eluent. Appropriate fractions were pooled, and solvents were removed in vacuo to dryness, to give 8.7 g of a glass. TLC (silica gel: CHCl3/MeOH=9:1, Rf=0.56).
  • 102. c) Synthesis of 1-tert-Butoxycarbonyl-2-(S)-(2-hydroxyethyl) piperazine
  • 103. The product from Step B (8.7 g) was dissolved in ethanol (35 ml) treated with Pd(OH)2-charcoal (0.8 g) and acetic acid (3 ml). Hydrogenation was carried out under 30 p.s.i. overnight. The reaction mixture was filtered through a diatomaceous earth pad and the solvent was removed in vacuo to dryness.
  • 104. d) Synthesis of 1-tert-Butoxycarbonyl-2(S)-(2-hydroxyethyl)-4-(1-naphthoyl) piperazine
  • 105. To a solution of the product from Step C (8.4 g) in acetonitrile (40 ml) was added 110 ml 1 N aqueous NaOH followed by a solution of 1-naphthoyl chloride (5.14 g) in acetonitrile (20 ml). After about 3 hours stirring, most of the acetonitrile was removed in vacuo and the remaining mixture was extracted with chloroform. It was dried (MgSO4) and the solvent was removed in vacuo to dryness, to give 8.12 g. of product. TLC (silica gel: CHCl3/MeOH=9:1, Rf= 0.64).
  • 106. e) Synthesis of 1-tert-Butoxycarbonyl-2(S)-(2-triphenylmethylthioethyl)-4-(1-naphthoyl)-piperazine
  • 107. To an ice-cooled solution of triphenylphosphine (0.53 g) in 5 ml dry THF was added dropwise a solution of diethylazodicarboxylate (DEAD, 0.25 g) in 2 ml THF. After stirring at 0-50° C. for about 30 minutes, a solution of the product from Step D (0.4 g) and triphenylmercaptan (0.55 g) in 10 ml THF was added dropwise. The mixture was stirred at 0-5° C. for about 1 hour and room temperature for about 1 hour. The solvent was evaporated in vacuo to dryness and the residue was chromatographed on silica gel (40 g) using CHCl3 as eluent. Appropriate fractions were pooled and the solvent was removed in vacuo to dryness, to give a pale yellow foam 420 mg. Mass Spec (Electrospray) 665.2 (643+23(sodium)). TLC (silica gel: CHCl3/acetone=9:1 Rf=0.53).
  • 108. f) Synthesis of 2(S)-(2-Triphenylmethylthioethyl)-4-(1-naphthoyl) piperazine
  • 109. To a stirred solution of the product from Step E (2.2 g) in 30 ml CH2Cl2 was added 10 ml trifluoroacetic acid (TFA). The mixture was stirred for about 30 minutes. Volatile substances were removed in vacuo to dryness. The residue was dissolved in CHCl3 (50 ml) and treated with excess triethylamine (4 ml). The mixture was washed with water, then dried (MgSO4) and volatile substances were removed in vacuo to dryness, to give a pale yellow glass, 2.1 g; TLC (silica gel; CHCl3/MeOH=9:1, Rf=0.63).
  • 110. g) Synthesis of 1-[2(R)-N-tert-Butoxycarbonylamino-3-triphenyl methylthiopropyl]-2(S)-(2-triphenylmethylthioethyl)-4-(1-naphthoyl)-piperazine
  • 111. To a solution of the product from Step F (0.9 g) and 2(R)-N-tert-butoxycarbonylamino-3-triphenylmethylthiopropanal (1.2 g) prepared according to the procedure of O. P. Goel, et al., (Org. Syn. 1988, 67, 69-75), in CH2Cl2 (20 ml) containing 1% acetic acid, was added 4 g of molecular sieves 4 Å followed by portion wise addition of Na(OAc)3BH (1 g) over a 30 minutes period. After stirring for about 2 hours, the mixture was filtered and the filtrate was washed with water, 5% aqueous NaHCO3, water, and then dried (MgSO4). The solvent was evaporated in vacuo to dryness, and the residue was chromatographed on silica gel (60 g) using CHCl3 as an eluent. Appropriate fractions were pooled and solvent was removed in vacuo to dryness, to give 0.6 g white foam. TLC (silica gel, CHCl3/acetone=9:1; Rf=0.55); Mass Spec (Electro Spray) 974.3.
  • 112. h) Synthesis of 1-[2(R)-amino-3-mercaptopropyl]-2(S)-2-mercaptoethyl)-4-(1-naphthoyl)-piperazine-1,2-cyclodisulfide, (Compound 28), and Bis-1,1′-2,2′-[2(R)-Amino-3-mercaptopropyl]-2(S)-[2-mercaptoethyl)-4-(1-naphthoyl)-piperazine-tetrasulfide, (Compound 29)
  • 113. To a stirred solution of the product from step g (0.7 g) in CHCl3/CH3OH (1:3, 60 ml) was added a solution of iodine in methanol (0.2 g in 5 ml). After stirring for about 40 minutes most of the solvents were removed in vacuo to dryness and the residue was partitioned between ethyl acetate (30 ml) and 5% aqueous Na2S2O3. The organic layer was washed with water, then dried (MgSO4). After evaporation of solvent the residue was treated with 50% trifluoroacetic acid in dichloromethane (10 ml) for about 30 minutes. Volatile substances were removed in vacuo to dryness and the residue was triturated with ether and filtered.
  • 114. The crude product was subjected to preparative high performance liquid chromatography (HPLC) using a C18 column and 0.1% aqueous TFA and CH3CN as the mobile phase. Earlier fractions (retention=5 minutes, CH3CN/0.1% aqueous TFA= 50:50, elution rate=1 ml/min) gave the white solid 1,2 cyclodisulfide; Mass. Spec. (Electrospray)=388.1. Later fractions (retention time=7.2 minutes using the same isocratic conditions) gave the dimer; Mass Spec. (Electrospray)=775.1 The ratio of cyclic disulfide and dimeric tetrasulfide was about 4 to 1.
  • EXAMPLE 5 Alternative cyclization of compound 30 using immobilized oxidizing resin (EKATHIOX™ resin) or air.
  • 115. a) Synthesis of 1-[2(R)-Amino-3-mercaptopropyl]-2(S)-2-mercaptoethyl)-4-(1-naphthoyl)-piperazine (Compound 30)
  • 116. The product from Step G (450 mg) was treated for about 30 minutes with 50% TFA in CH2Cl2 (10 ml) containing 1 ml triethylsilane. Volatile substances were then removed in vacuo to dryness. The residue was triturated with ether, filtered, then dried, resulting in 280 mg of 1-(2(R)-amino-3-mercaptopropyl]-2(S)-(2-mercaptoethyl)-4-(1-naphthoyl)-piperazine, (Compound 30). Mass spec (electrospray) 390.3
  • 117. b) Cyclization of 1-[2(R)-Amino-3-mercaptopropyl]-2(S)-2-mercaptoethyl)-4-(1-naphthoyl)-piperazine (Compound 30) to form 1-[2(R)-Amino-3-mercaptopropyl]-2(S)-2-mercaptoethyl)-4-(1-naphthoyl)-piperazine-1,2-cyclodisulfide (Compound 28)
  • 118. 100 mg of the product from Step a) was dissolved in 10 ml aqueous CH3CN (H2O/CH3CN=7.3), and treated with 3 g of EKATHIOX™ resin (0.34 mmoles/gm). The mixture was stirred at room temperature for about 6 hours. The mixture was then filtered, the resin washed with aqueous methanol (1:3), and most of the organic solvent was removed in vacuo to a small volume. The concentrate was subjected to preparative HPLC using 0.1% aqueous TFA and CH3CN as mobile phase. Appropriate fractions were pooled and most of the solvents removed in vacuo to small volume. The concentrate was then lyophilized.
  • 119. Alternatively, the solution of 1-[2(R)-amino-3-mercaptopropyl]-2(S)-(2-mercaptoethyl)-4-(1-naphthoyl)-piperazine (Compound 30) in aqueous CH3CN was stirred with air in pH 6-8 range. In both instances the reaction mixture showed a distribution of the cyclic disulfide and the tetrasulfide dimer in the ratio of about 4 to 1.
  • OTHER EMBODIMENTS
  • 120. It is to be understood that while the invention has been described in conjunction with the detailed description thereof, that the foregoing description is intended to illustrate and not limit the scope of the invention, which is defined by the scope of the appended claims. Other aspects, advantages, and modifications are within the claims.

Claims (41)

What is claimed is:
1. A compound of formula I or formula II
Figure US20010000344A1-20010419-C00013
wherein
R1 is N(R10) (R11);
R2 is thio lower alkyl;
each of R3 and R5, independently, is CH2 or C(O);
R4 is substituted or unsubstituted thio lower alkyl, wherein the substituent is CH2NHC(O)R and said substituent is attached to the thio group;
R6 is a residue of a natural or synthetic α-amino acid;
R7 is a residue of a natural or synthetic α-amino acid;
R8 is OH or lower alkoxy, or, together with R7, forms homoserinelactone;
each of R9, R10 and R11, independently, is H or lower alkyl;
R12 is a substituted or unsubstituted moiety selected from cycloalkyl, cycloalkyl lower alkyl, aryl, aryl lower alkyl, heterocycle, and heterocycle lower alkyl, wherein the substituent is selected from the group consisting of lower alkyl, aryl, halo, lower alkoxy, and C(O)—R7—R8;
R13 is lower alkyl, aryl, or aryl lower alkyl;
R18 is H or, together with R9, forms —CH2CH2—;
or a pharmaceutically acceptable salt thereof.
2. A compound of
claim 1
, wherein said compound is of formula I; or a pharmaceutically acceptable salt thereof.
3. A compound of
claim 1
, wherein said compound is of formula II; or a pharmaceutically acceptable salt thereof.
4. A compound of
claim 2
, wherein
R6 is —N(R14)CH(R15)C(O)—, where R14 is H or lower alkyl, and R15 is a substituted or unsubstituted moiety selected from the group consisting of lower alkyl, aryl, aryl lower alkyl, heterocycle, and heterocycle lower alkyl, wherein the substituent is lower alkyl, halo, or lower alkoxy, or R15, together with N(R14)C attached thereto, form a heterocycle;
R7 is —N(R16)CH(R17)C(O)— where R16 is H or lower alkyl; and R17 is (CH2)mS(O)nCH3 where m is 1-6 and n is 0-2, or is a substituted or unsubstituted moiety selected from lower alkyl and thio lower alkyl, where the substituent is C(O)N(R10) (R11); and
R8 is OH or lower alkoxy;
or a pharmaceutically acceptable salt thereof.
5. A compound of
claim 4
, wherein
R2 is CH2SH; and
R4 is C(CH3)2SH or CH2SH;
or a pharmaceutically acceptable salt thereof.
6. A compound of
claim 5
, wherein R15, together with N(R14)C attached hereto, form a heterocycle; R16 is H; and R17 is (CH2)2S(O)nCH3;
or a pharmaceutically acceptable salt thereof.
7. A compound of
claim 6
, wherein
R1 is NH2;
R3 is CH2;
R5 is C(O); and
R8 is OH or OCH3;
or a pharmaceutically acceptable salt thereof.
8. A compound of
claim 4
, wherein
R2 is CH2SH; and
R4 is C(CH3)2SCH2NHC(O)CH3 or CH2SCH2NHC(O)CH3;
or a pharmaceutically acceptable salt thereof.
9. A compound of
claim 8
, wherein
R15, together with N(R14)C attached thereto, form a heterocycle;
R16 is H; and
R17 is (CH2)2S(O)nCH3;
or a pharmaceutically acceptable salt thereof.
10. A compound of
claim 9
, wherein
R1 is NH2;
R3 is CH2;
R5 is C(O); and
R8 is OH or OCH3;
or a pharmaceutically acceptable salt thereof.
11. A compound of
claim 3
, wherein
R2 is CH2SH; and
R4 is C(CH3)2SH or CH2SH;
or a pharmaceutically acceptable salt thereof.
12. A compound of
claim 11
, wherein
R12 is substituted or unsubstituted aryl, or substituted or unsubstituted aryl lower alkyl; and
R18 is H;
or a pharmaceutically acceptable salt thereof.
13. A compound of
claim 12
, wherein
R1 is NH2;
R3 is CH2;
R5 is C(O);
R9 is H; and
R12 is substituted or unsubstituted phenyl or benzyl, where said substituent is lower alkyl or halo;
or a pharmaceutically acceptable salt thereof.
14. A compound of
claim 3
, wherein
R2 is (CH2)SH; and
R4 is C(CH3)2SCH2NHC(O)CH3 or CH2SCH2NHC(O)CH3;
or a pharmaceutically acceptable salt thereof.
15. A compound of
claim 14
, wherein R12 is substituted or unsubstituted aryl or aryl lower alkyl;
or a pharmaceutically acceptable salt thereof.
16. A compound of
claim 15
, wherein
R1 is NH2;
R3 is CH2;
R5 is C(O);
R9 is H; and
R12 is substituted or unsubstituted phenyl or benzyl, where said substituent is lower alkyl or halo;
or a pharmaceutically acceptable salt thereof.
17. A compound of
claim 1
, said compound of the formula
Figure US20010000344A1-20010419-C00014
or a pharmaceutically acceptable salt thereof.
18. A compound of formula III or formula IV;
Figure US20010000344A1-20010419-C00015
wherein
Y is CH2 or C(O);
R1, R2, R3, and R4, each is, independently, H, lower alkyl, or an optionally substituted moiety selected from the group consisting of arylalkyl, alkenyl, (C1-C 18)-aliphatic acyl, and arylacyl,
R5 and R6 each is, independently, H or CH3;
R9 and R10 each is independently selected from the group consisting of H, lower alkyl, and (C3-C6) cycloalkyl;
Ar is an optionally substituted moiety selected from the group consisting of aryl and heterocycle;
n is 0 or an integer from 1 to 4;
wherein each optionally substituted moiety is optionally substituted by one or more substituent independently selected from the group consisting of aryl, heterocycle, halogen, OR9, NR9R10, CN, NO2, CF3, or lower alkyl, said lower alkyl optionally substituted with (C1-C4)-alkoxy, NR9R10, (C3-C6)-cycloalkyl, or OH;
or a pharmaceutically acceptable salt thereof.
19. A compound of
claim 18
, wherein said compound is of formula III, or a pharmaceutically acceptable salt thereof.
20. A compound of
claim 18
, wherein said compound is of formula IV, or a pharmaceutically acceptable salt thereof.
21. A compound of
claim 19
, wherein Y is C(O); or a pharmaceutically acceptable salt thereof.
22. A compound of
claim 20
, wherein Y is C(O); or a pharmaceutically acceptable salt thereof.
23. A compound of
claim 18
, wherein said compound is of the formula
Figure US20010000344A1-20010419-C00016
or a pharmaceutically acceptable salt thereof.
24. A compound of formula V
Figure US20010000344A1-20010419-C00017
wherein
Ar is optionally substituted aryl or optionally substituted heterocycle, wherein each substituent is independently selected from the group consisting of aryl, heterocycle, halogen, OR9, NR9R10, CN, NO2, CF3, and lower alkyl, said lower alkyl optionally substituted with (C1-C4)-alkoxy, NR9R10, (C3-C6)-cycloalkyl, or OH;
R1 and R2 each is, independently, CH2 or C(O);
R3 and R4 each is, independently, H or CH3;
R5, R6, R7, and R8 each is independently selected from the group consisting of H, or an optionally substituted moiety selected from the group consisting of (C1-C8)-alkyl, alkenyl, alkynyl, aryl, and heterocycle;
wherein said optionally substituted moiety is optionally substituted by one or more substituents independently selected from the group consisting of (C3-C6)-cycloalkyl, optionally further substituted aryl, and optionally further substituted heterocycle,
wherein said optionally further substituted aryl and heterocycle are optionally substituted by one or more substituents independently selected from the group consisting of (C1-C4)-alkyl, halogen, (CH2)mOR9, and (CH2)mNR9R10;
R9 and R10 each is, independently, H lower alkyl or (C3-C6) -cycloalkyl;
R11 is H or NH2;
m is 0 or an integer from 1 to 4; and
n is 0, 1, or 2;
or a pharmaceutically acceptable salt thereof.
25. A compound of
claim 24
, wherein R1 is C(O), or a pharmaceutically acceptable salt thereof.
26. A compound of
claim 24
, wherein R1 is CH2, or a pharmaceutically acceptable salt thereof.
27. A compound of
claim 24
, wherein R2 is C(O), or a pharmaceutically acceptable salt thereof.
28. A compound of
claim 24
, wherein R2 is CH2, or a pharmaceutically acceptable salt thereof.
29. A compound of
claim 24
, wherein R and R4 are CH3, or a pharmaceutically acceptable salt thereof.
30. A compound of
claim 24
, wherein R5 is n-butyl, and each of R6, R7, and R8 is H, or a pharmaceutically acceptable salt thereof.
31. A compound of
claim 24
, wherein Ar is optionally substituted naphthyl, or a pharmaceutically acceptable salt thereof.
32. A compound of
claim 24
, of the formula
Figure US20010000344A1-20010419-C00018
or a pharmaceutically acceptable salt thereof.
33. A method of treating tumors or restenosis in a subject in need of said treatment, which comprises administering to said subject a therapeutically effective amount of a compound or salt of
claim 1
.
34. A method of treating tumors or restenosis in a subject in need of said treatment, which comprises administering to said subject a therapeutically effective amount of a compound or salt thereof according to
claim 17
.
35. A pharmaceutical composition comprising a compound of
claim 1
and a pharmaceutically acceptable carrier.
36. A method of treating tumors or restenosis in a subject in need of said treatment, which comprises administering to said subject a therapeutically effective amount of a compound or salt of
claim 18
.
37. A method of treating tumors or restenosis in a subject in need of said treatment, which comprises administering to said subject a therapeutically effective amount of a compound or salt thereof according to
claim 23
.
38. A pharmaceutical composition comprising a compound of
claim 18
and a pharmaceutically acceptable carrier.
39. A method of treating tumors or restenosis in a subject in need of said treatment, which comprises administering to said subject a therapeutically effective amount of a compound or salt of
claim 24
.
40. A method of treating tumors or restenosis in a subject in need of said treatment, which comprises administering to said subject a therapeutically effective amount of a compound or salt thereof according to
claim 32
.
41. A pharmaceutical composition comprising a compound of
claim 24
and pharmaceutically acceptable carrier.
US09/728,397 1996-06-28 2000-12-01 Prenyl transferase inhibitors Expired - Fee Related US6313109B2 (en)

Priority Applications (1)

Application Number Priority Date Filing Date Title
US09/728,397 US6313109B2 (en) 1996-06-28 2000-12-01 Prenyl transferase inhibitors

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US08/675,439 US5767274A (en) 1996-06-28 1996-06-28 Prenyl transferase inhibitors
US09/098,393 US6180619B1 (en) 1996-06-28 1998-06-16 Prenyl transferase inhibitors
US09/728,397 US6313109B2 (en) 1996-06-28 2000-12-01 Prenyl transferase inhibitors

Related Parent Applications (1)

Application Number Title Priority Date Filing Date
US09/098,393 Division US6180619B1 (en) 1996-06-28 1998-06-16 Prenyl transferase inhibitors

Publications (2)

Publication Number Publication Date
US20010000344A1 true US20010000344A1 (en) 2001-04-19
US6313109B2 US6313109B2 (en) 2001-11-06

Family

ID=22269090

Family Applications (2)

Application Number Title Priority Date Filing Date
US09/098,393 Expired - Fee Related US6180619B1 (en) 1996-06-28 1998-06-16 Prenyl transferase inhibitors
US09/728,397 Expired - Fee Related US6313109B2 (en) 1996-06-28 2000-12-01 Prenyl transferase inhibitors

Family Applications Before (1)

Application Number Title Priority Date Filing Date
US09/098,393 Expired - Fee Related US6180619B1 (en) 1996-06-28 1998-06-16 Prenyl transferase inhibitors

Country Status (14)

Country Link
US (2) US6180619B1 (en)
EP (1) EP1087981B1 (en)
JP (1) JP2002518403A (en)
AR (1) AR018873A1 (en)
AT (1) ATE323096T1 (en)
AU (1) AU4226299A (en)
CA (1) CA2337603A1 (en)
DE (1) DE69930852T2 (en)
DK (1) DK1087981T3 (en)
ES (1) ES2258332T3 (en)
HK (1) HK1032002A1 (en)
NO (1) NO20006314D0 (en)
TW (1) TW509693B (en)
WO (1) WO1999065922A2 (en)

Families Citing this family (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US7425537B2 (en) 2000-08-22 2008-09-16 The United States Of America As Represented By The Secretary Of The Department Of Health And Human Services SH2 domain binding inhibitors
US20030144260A1 (en) * 2002-01-03 2003-07-31 Yissum Research Development Company Of The Hebrew University Of Jerusalem Heterocyclic compounds, method of developing new drug leads and combinatorial libraries used in such method
US7541466B2 (en) * 2003-12-23 2009-06-02 Genzyme Corporation Tetrahydroisoquinoline derivatives for treating protein trafficking diseases

Family Cites Families (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO1995000497A1 (en) * 1993-06-18 1995-01-05 Merck & Co., Inc. Inhibitors of farnesyl-protein transferase
US5767274A (en) * 1996-06-28 1998-06-16 Biomeasure, Incorporated Prenyl transferase inhibitors

Also Published As

Publication number Publication date
AU4226299A (en) 2000-01-05
JP2002518403A (en) 2002-06-25
HK1032002A1 (en) 2001-07-06
AR018873A1 (en) 2001-12-12
WO1999065922A2 (en) 1999-12-23
TW509693B (en) 2002-11-11
US6180619B1 (en) 2001-01-30
US6313109B2 (en) 2001-11-06
EP1087981A2 (en) 2001-04-04
WO1999065922A3 (en) 2000-02-03
DE69930852D1 (en) 2006-05-24
ES2258332T3 (en) 2006-08-16
ATE323096T1 (en) 2006-04-15
DE69930852T2 (en) 2006-11-30
DK1087981T3 (en) 2006-05-15
EP1087981B1 (en) 2006-04-12
NO20006314L (en) 2000-12-12
NO20006314D0 (en) 2000-12-12
CA2337603A1 (en) 1999-12-23

Similar Documents

Publication Publication Date Title
US5773455A (en) Inhibitors of prenyl transferases
EP1015439B1 (en) Prenyl transferase inhibitors
US6180619B1 (en) Prenyl transferase inhibitors
AU715475C (en) Prenyl transferase inhibitors
KR100491433B1 (en) Inhibition of Prenyl Transferase
KR20050019003A (en) Prenyl trnasferase inhibitors
KR20050019004A (en) Prenyl trnasferase inhibitors
MXPA98010693A (en) Inhibitors of the prenyl-transfer

Legal Events

Date Code Title Description
AS Assignment

Owner name: BIOMEASURE, INCORPORATED, MASSACHUSETTS

Free format text: ASSIGNMENT OF ASSIGNORS INTEREST;ASSIGNOR:KIM, SUN H.;REEL/FRAME:011275/0859

Effective date: 20010130

AS Assignment

Owner name: SOCIETE DE CONSEILS DE RECHERCHES ET D'APPLICATION

Free format text: ASSIGNMENT OF ASSIGNORS INTEREST;ASSIGNOR:BIOMEASURE INCORPORATED;REEL/FRAME:011288/0413

Effective date: 20010201

AS Assignment

Owner name: SOCIETE DE CONSEILS DE RECHERCHES ET D'APPLICATION

Free format text: DOCUMENT PREVIOUSLY RECORDED AT REEL 11288 FRAME 0413 CONTAINED ERRORS IN PROPERTY NUMBERS( LIST INCORRECT PROPERTY NUMBERS) 09-728387, DOCUMENT RE-RECORDED TO CORRECT ERRORS ON STATED REEL.;ASSIGNOR:BIOMEASURE, INCORPORATED;REEL/FRAME:011574/0489

Effective date: 20010201

FEPP Fee payment procedure

Free format text: PAYOR NUMBER ASSIGNED (ORIGINAL EVENT CODE: ASPN); ENTITY STATUS OF PATENT OWNER: LARGE ENTITY

FPAY Fee payment

Year of fee payment: 4

AS Assignment

Owner name: IPSEN PHARMA S.A.S., FRANCE

Free format text: CHANGE OF NAME;ASSIGNOR:SOCIETE DE CONSEILS DE RECHERCHES ET D'APPLICATIONS SCIENTIFIQUES, S.A.S.;REEL/FRAME:022240/0332

Effective date: 20081128

REMI Maintenance fee reminder mailed
LAPS Lapse for failure to pay maintenance fees
STCH Information on status: patent discontinuation

Free format text: PATENT EXPIRED DUE TO NONPAYMENT OF MAINTENANCE FEES UNDER 37 CFR 1.362

FP Lapsed due to failure to pay maintenance fee

Effective date: 20091106