US11915799B2 - Polymer physical property prediction device, recording medium, and polymer physical property prediction method - Google Patents
Polymer physical property prediction device, recording medium, and polymer physical property prediction method Download PDFInfo
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- US11915799B2 US11915799B2 US17/008,999 US202017008999A US11915799B2 US 11915799 B2 US11915799 B2 US 11915799B2 US 202017008999 A US202017008999 A US 202017008999A US 11915799 B2 US11915799 B2 US 11915799B2
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- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16C—COMPUTATIONAL CHEMISTRY; CHEMOINFORMATICS; COMPUTATIONAL MATERIALS SCIENCE
- G16C20/00—Chemoinformatics, i.e. ICT specially adapted for the handling of physicochemical or structural data of chemical particles, elements, compounds or mixtures
- G16C20/30—Prediction of properties of chemical compounds, compositions or mixtures
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- C—CHEMISTRY; METALLURGY
- C08—ORGANIC MACROMOLECULAR COMPOUNDS; THEIR PREPARATION OR CHEMICAL WORKING-UP; COMPOSITIONS BASED THEREON
- C08F—MACROMOLECULAR COMPOUNDS OBTAINED BY REACTIONS ONLY INVOLVING CARBON-TO-CARBON UNSATURATED BONDS
- C08F110/00—Homopolymers of unsaturated aliphatic hydrocarbons having only one carbon-to-carbon double bond
- C08F110/02—Ethene
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- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
- G01N33/44—Resins; Plastics; Rubber; Leather
- G01N33/442—Resins; Plastics
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- G06N—COMPUTING ARRANGEMENTS BASED ON SPECIFIC COMPUTATIONAL MODELS
- G06N20/00—Machine learning
- G06N20/10—Machine learning using kernel methods, e.g. support vector machines [SVM]
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- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16C—COMPUTATIONAL CHEMISTRY; CHEMOINFORMATICS; COMPUTATIONAL MATERIALS SCIENCE
- G16C20/00—Chemoinformatics, i.e. ICT specially adapted for the handling of physicochemical or structural data of chemical particles, elements, compounds or mixtures
- G16C20/70—Machine learning, data mining or chemometrics
Definitions
- the present invention relates to a device that predicts the physical properties of a polymer (hereinafter “polymer physical property prediction device”, a recording medium, and a polymer physical property prediction method.
- Patent Document 1 Japanese National Publication of International Patent Application No. 2004-514902
- Non-Patent Document 1 David Rogers et al., “Extended-Connectivity Fingerprints”, American Chemical Society, J. Chem. Info. Model., Vol. 50, No. 5, 2010, pp. 742-754.
- a polymer physical property prediction device includes a processor, and a memory storing program instructions that cause the processor to read a structural unit from a storage unit and use the structural unit to calculate numbers each indicating how many substructures are in a polymer, the polymer being formed of repetition of the structural unit, calculate a number indicating how many atoms are in the structural unit, calculate number densities of the substructures from the numbers of substructures and the number of atoms in the structural unit, construct a regression model that predicts a physical property value by using an experimental value of a physical property of the polymer and the number densities of the substructures, the experimental value being obtained from the storage unit, input a polymer structure of which the physical property value is to be predicted, and predict the physical property value corresponding to the input polymer structure by using the regression model.
- a means to solve the above-described problem can be a program or a method for predicting the physical properties of a polymer.
- the physical properties of a polymer can be accurately predicted.
- FIG. 1 is a drawing illustrating an example of a system configuration according to the present embodiment
- FIG. 2 is a drawing illustrating an example of a hardware configuration of a physical property prediction device
- FIG. 3 is a drawing illustrating a first functional configuration example of the physical property prediction device
- FIG. 4 is a drawing illustrating an example of a data configuration of a polymer structure and physical property DB
- FIG. 5 is a drawing for describing an overview of a prediction process according to the present embodiment
- FIG. 6 is a drawing illustrating an example of the number density
- FIG. 7 is a drawing for describing a difference caused when replication of a repeating unit is performed and no replication of a repeating unit is performed;
- FIG. 8 A is a flowchart for describing the prediction process
- FIG. 8 B is a flowchart for describing the prediction process
- FIG. 9 is a drawing illustrating an example of a data configuration of a regression model management table
- FIG. 10 is a drawing illustrating a second functional configuration example of the physical property prediction device
- FIG. 11 is a drawing illustrating a third functional configuration example of the physical property prediction device.
- FIG. 12 is a drawing illustrating a fourth functional configuration example of the physical property prediction device
- FIG. 13 is a drawing illustrating a functional configuration example of a physical property prediction device based on an existing technique
- FIG. 14 is a drawing illustrating an example of evaluation results
- FIG. 15 is a drawing illustrating an example of evaluation results.
- FIG. 16 is a drawing illustrating an example of a manufacturing method for manufacturing a polymer.
- FIG. 1 is a drawing illustrating the example of the system configuration according to the present embodiment
- a system 1000 includes a physical property prediction device 100 and multiple terminals 3 , and each of the terminals can be connected through a network 2 .
- the terminal 3 is an information processing terminal used by a user, is connected to the physical property prediction device 100 , and utilizes processing performed by a prediction processing unit 40 .
- the physical property prediction device 100 is an information processing device including the prediction processing unit 40 that predicts a physical property of a polymer.
- the prediction processing unit 40 performs machine learning using a structure of the polymer and data indicating the physical property of the polymer that are provided in advance to generate a regression model.
- a physical property value is predicted using the generated regression model with respect to the received polymer structure 6 a , and a predicted physical property value 6 b is sent to the terminal 3 .
- a configuration of the system 1000 is not limited to the example of FIG. 1 .
- the physical property prediction device 100 may be utilized in a stand-alone manner. In this case, when the polymer structure 6 a is input by a user operation of an input device 14 ( FIG. 2 ), the physical property value 6 b is output to a display device 15 ( FIG. 2 ).
- the physical property prediction device 100 has a hardware configuration as illustrated in FIG. 2 .
- FIG. 2 is a drawing illustrating an example of the hardware configuration of the physical property prediction device.
- the physical property prediction device 100 is an information processing device controlled by a computer and includes a central processing unit (CPU) 11 , a main storage device 12 , an auxiliary storage device 13 , the input device 14 , the display device 15 , a communication interface (I/F) 17 , and a drive device 18 , which are connected to a bus B.
- CPU central processing unit
- main storage device 12 main storage device 12
- an auxiliary storage device 13 the input device 14
- the display device 15 the display device 15
- a communication interface (I/F) 17 the communication interface
- drive device 18 which are connected to a bus B.
- the CPU 11 corresponds to a processor that controls the physical property prediction device 100 according to a program stored in the main storage device 12 .
- a random access memory (RAM) and a read only memory (ROM) are used to store or temporarily store a program executed by the CPU 11 , data necessary for processing by the CPU 11 , and data obtained by processing by the CPU 11 , for example.
- a hard disk drive is used for the auxiliary storage device 13 , for example, to store data such as a program for executing various processing.
- a portion of the program stored in the auxiliary storage device 13 is loaded into the main storage device 12 and is executed by the CPU 11 to achieve various processing.
- the main storage device 12 , the auxiliary storage device 13 , and an external storage device accessible by the physical property prediction device 100 will be collectively referred to as a storage unit 130 .
- the input device 14 includes a mouse and a keyboard and is used by a user to input various information required for processing by the physical property prediction device 100 .
- the display device 15 displays various necessary information under control of the CPU 11 .
- the input device 14 and the display device 15 may be a user interface, such as an integrated touch panel.
- the communication I/F 17 performs communication through a network, such as a wired or wireless network. The communication by the communication I/F 17 is not limited to the wired or wireless communication.
- the drive device 18 interfaces a recording medium 19 set in the drive device 18 (e.g., a compact disc read-only memory (CD-ROM)) with the physical property prediction device 100 .
- a recording medium 19 set in the drive device 18 e.g., a compact disc read-only memory (CD-ROM)
- a program for implementing the processing performed by the physical property prediction device 100 is provided to the physical property prediction device 100 through the recording medium 19 , such as a CD-ROM.
- a program for implementing various processing according to the present embodiment, which will be described later, is stored in the recording medium 19 , and the program stored in the recording medium 19 is installed in the physical property prediction device 100 through the drive device 18 .
- the installed program can be executed by the physical property prediction device 100 .
- the recording medium 19 for storing the program is not limited to a CD-ROM, but may be one or more non-transitory and tangible media having a computer readable data structure.
- a computer readable recording medium in addition to a CD-ROM a portable storage medium, such as a digital versatile disk (DVD) and a USB memory, or a semiconductor memory, such as a flash memory, may be used.
- FIG. 3 is a drawing illustrating a first functional configuration example of the physical property prediction device.
- the physical property prediction device 100 includes the prediction processing unit 40 .
- the prediction processing unit 40 corresponds to a prediction process performed by the CPU 11 executing a corresponding program.
- the storage unit 130 stores a polymer structure and physical property DB 31 , a model structure 33 a , the number of substructures 33 b , the number of atoms 33 c , a substructure number density 33 d , an important substructure 33 e , a regression model 33 f , a polymer structure 6 a , a physical property value 6 b , for example.
- the prediction processing unit 40 obtains the regression model 33 f for predicting the physical properties of the polymer structure 6 a specified by a user by performing machine learning, predicts the physical properties of the polymer structure 6 a by using the obtained regression model 33 f , and outputs the obtained physical property value 6 b .
- the prediction processing unit 40 includes a model generator 41 and a physical property prediction unit 45 as processing units.
- the model generator 41 learns the physical property of the polymer structure in which a structural unit is repeatedly replicated and linked using the polymer structure and physical property DB 31 and determines the regression model 33 f .
- a structural unit forming a polymer by repetition is called a “repeating unit”.
- a repeating unit and an experimental value of a physical property experimentally obtained in advance are stored in association with each polymer.
- the model generator 41 includes a model structure generator 43 a , a substructure number calculating unit 43 b , an atom calculating unit 43 c , a substructure number density calculating unit 43 d , a dimension reduction unit 43 e , and a regression model construction unit 43 f as processing units. Either or both of the model structure generator 43 a and the dimension reduction unit 43 e can be removed.
- the model structure generator 43 a obtains the repeating unit from the polymer structure and physical property DB 31 and repeats the process of replicating and linking the obtained repeating unit a predetermined number of times to generate the model structure 33 a .
- the repeating unit includes a substructure.
- the repeating unit may also be an entire of a substructure.
- the repeating unit are linked multiple times to represent a polymer.
- the generated model structure 33 a is stored in the storage unit 130 .
- the repeating unit and the model structure 33 a may be represented in a predetermined form.
- the first functional configuration example describes the repeating unit and the model structure 33 a in the simplified molecular input line entry syntax (SMILES) notation, but the notation is not limited to this.
- SILES simplified molecular input line entry syntax
- the substructure number calculating unit 43 b calculates the number of substructures 33 b based on the model structure 33 a .
- the numbers of substructures 33 b are represented by an n-dimensional vector and stored in the storage 130 .
- the atom calculating unit 43 c calculates the number of atoms 33 c based on the model structure 33 a .
- the obtained number of atoms 33 c is stored in the storage unit 130 .
- the substructure number density calculating unit 43 d calculates the substructure number density 33 d by using the numbers of substructures 33 b and the number of atoms 33 c .
- the obtained substructure number densities 33 d are represented by a vector of the same n-dimensional vector as the vector of the substructure number 33 b and are stored in the storage unit 130 .
- the dimension reduction unit 43 e constructs a temporal regression model by using the substructure number density 33 d and the experimental value, and reduces the dimensions of the temporal regression model based on a predetermined dimension reduction method to obtain the important substructure 33 e .
- the important substructure 33 e is stored in the storage unit 130 .
- the important substructure 33 e is data specifying an element (e.g., a vector) that will contribute to the prediction accuracy of the regression model 33 f to be constructed in the substructure number density 33 d.
- a procedure corresponding to a regression analysis method to be used is determined in advance.
- the dimensions can be reduced by removing a coefficient term of 0.
- the dimensions can be reduced by calculating the importance of explanatory variables and excluding variables that have the importance lower than or equal to a threshold.
- the dimensions can be reduced by searching for combinations of explanatory variables having highest prediction accuracy by adding or reducing an explanatory variable one by one when a temporal regression model is constructed.
- the regression model construction unit 43 f constructs the regression model 33 f by performing a regression analysis based on the important substructure 33 e obtained by the dimension reduction unit 43 e by using the substructure number density 33 d and the experimental value.
- the regression model 33 f is stored in the storage unit 130 .
- the experimental value can be obtained from the polymer structure and physical property DB 31 .
- any one of Lasso regression, random forest regression, a stepwise method, partial linear regression, ridge regression, kernel ridge regression, support vector regression, decision tree regression, Gaussian process regression, and so on can be applied.
- a temporal regression model can be obtained by the Lasso regression
- the regression model 33 f can be obtained by the Gaussian process regression.
- the physical property prediction unit 45 predicts the physical properties of the polymer based on the polymer structure 6 a by using the regression model 33 f in response to an input of the polymer structure 6 a specified by a user.
- the polymer structure 6 a may specify the repeating unit by the SMILES notation or the like.
- the physical property prediction unit 45 includes a polymer structure input unit 47 a and a polymer physical property prediction unit 47 b as processing units.
- the polymer structure input unit 47 a inputs the polymer structure 6 a specified by a user and the polymer structure 6 a is stored in the storage unit 130 .
- the polymer structure input unit 47 a may input the polymer structure 6 a by the communication I/F 17 receiving the polymer structure 6 a through the network 2 or may input the polymer structure 6 a in accordance with a user's specification by the input device 14 of the property prediction device 100 .
- the polymer physical property prediction unit 47 b obtains the model structure, the numbers of substructures, and the number of atoms, from the polymer structure 6 a , to calculate the substructure number density, and predicts the physical property value by using the regression model 33 f stored in the storage unit 130 .
- the method of obtaining the model structure, the numbers of substructures, the number of atoms, and the substructure number density based on the polymer structure 6 a is similar to the method of the model generator 41 .
- the predicted physical property value 6 b is output to the storage unit 130 .
- the obtained physical property value 6 b is sent to the terminal 3 of the user and displayed.
- the obtained physical property value 6 b is displayed on the display device 15 .
- FIG. 4 is a drawing illustrating an example of a data configuration of the polymer structure and physical property DB.
- the polymer structure and physical property DB 31 is a database that manages the repeating unit and experimental values of various physical properties, such as a refractive index, for each polymer, and includes items such as a polymer name, the repeating unit, the refractive index, and a glass transition point.
- the polymer name indicates specific information specifying the polymer structure.
- An example in which the repeating unit is represented by the SMILES notation is used for the following description, but the notation of the repeating unit is not limited to the SMILES notation.
- the refractive index, the glass transition point, and the like are examples of various physical properties of the polymer experimentally obtained in advance, and the experimental values are shown for each name of the physical property.
- a repeating unit “*CC*” is associated with a polymer name “poly(ethylene)” and the experimental values, such as the refractive index “1.472”, are shown. Similarly, an experimental value of each physical property is shown for another polymer.
- the work table 32 is a table in which calculated values are stored for each repeating unit of the polymer of which the substructure number density 33 d is obtained, and includes items such as the polymer name, the repeating unit, the number of atoms, and the substructure number density.
- the polymer name indicates a polymer name registered in the polymer structure and physical property DB 31 .
- the number of substructures indicates the number of substructures 33 b obtained by the substructure number calculating unit 43 b .
- the number of atoms indicates the number of atoms 33 c obtained by the atom calculating unit 43 c .
- the substructure number density indicates the substructure number density 33 d obtained by the substructure number density calculating unit 43 d.
- the substructure number density of the work table 32 and the experimental values of the physical property of the polymer structure and physical property DB 31 are used for the machine learning by the regression analysis.
- the work table 32 may be associated with the polymer structure and physical property DB 31 by the polymer name.
- the data configuration example of the polymer structure and physical property DB 31 and the work table 32 illustrated in FIG. 4 is only one example, but is not limited to this example.
- FIG. 5 is a drawing for describing the overview of the prediction process according to the present embodiment.
- the model structure generator 43 a obtains the repeating unit from the polymer structure and physical property DB 31 (as described in (a) of FIG. 5 ). For example, a repeating unit “*CCO*” is obtained.
- “*” indicating a start and an end of a certain structure in the SMILES notation will be omitted.
- the model structure generator 43 a uses the obtained substructure as a repeating unit, and replicates the repeating unit to generate the model structure 33 a (as described in (b) of FIG. 5 ).
- the model structure generator 43 a repeats replicating the repeating unit “CCO” to the right a predetermined number of times, to generate the model structure 33 a “CCOCOCOCCCOCCCOCCCOCCCOCCO”, in which the repeating unit “CCO” are linked multiple times, in the memory unit 130 .
- the substructure number calculating unit 43 b generates a substructure number vector x 0 (i.e., the numbers of substructures 33 b ) of the structure model 33 a (as described in (c) in FIG. 5 ).
- the substructure number vector x 0 is represented in n dimensions by a structure descriptor, such as extended circular finger print (ECFP), atom pair, topological torsion, and neural finger print.
- ECFP extended circular finger print
- a structure descriptor represented by the number of C atoms, the number of O atoms, the number of COCs, or the like is used for the description.
- the structure descriptor is not limited to this.
- n-dimensional substructure number vector x 0 which consists of the number of C atoms “20”, the number of O atoms “10”, . . . , and the number of COCs “9”, is generated.
- a structure assigned to each vector, such as “C”, “O”, “COC”, indicates the type of the substructure of the polymer.
- n is an arbitrary natural number, and is usually about 256 to 2048.
- the atom calculating unit 43 c calculates the number of atoms included in the model structure 33 a (as described in (d) of FIG. 5 ). In the structure model “CCOCOCOCOCCCOCCCOCCCOCCCO”, the number of atoms is “30”.
- the substructure number density calculating unit 43 d divides the substructure number vector x 0 (i.e., the numbers of substructures 33 b ) obtained by the substructure number calculating unit 43 b in (c) of FIG. 5 by the number of atoms 33 c obtained by the atom calculating unit 43 c in (d) of FIG. 5 to generate the substructure number density vector x (i.e., the substructure number densities 33 d ) in (e) of FIG. 5 .
- the number of dimensions of the substructure number density vector x is n, which is the same number as the number of dimensions of the substructure number vector x 0 .
- a temporal regression model is constructed by the dimension reduction unit 43 e and the dimension reduction is performed (in (f) of FIG. 5 ). This can reduce n dimensions to n′ dimensions (n′ ⁇ n).
- n′ is a natural number smaller than n, and is usually about 16 to 128.
- the regression model construction unit 43 f constructs the regression model 33 f used in predicting the physical property value based on the important substructure 33 e (in (g) of FIG. 5 ).
- the regression model 33 f whose dimensions are reduced to several tens dimensions, is obtained.
- the regression model 33 f is expressed by the following equation (1) that obtains the predicted value y of the physical property of the polymer by the substructure number density vector x (i.e., the substructure number densities 33 d ).
- y f ( x ) (1)
- the number of substructure number density vector x is n, which is the number of dimensions. But after dimensions are reduced, the dimensions of the substructure number density vector x are n′. Because the predicted values are calculated using only the dimensions contributing to the prediction accuracy by using the important substructure 33 e , the physical property prediction process can be efficiently performed.
- the above-described process from (a) to (e) in FIG. 5 corresponds to the model generating process of the model generator 41 .
- the physical property prediction process is performed by the physical property prediction unit 45 .
- the physical property prediction unit 45 In response to the input of the polymer structure A of which the physical property is to be obtained, the physical property prediction unit 45 generates the substructure number density vector x A , and predicts the physical property value y A (in (h) of FIG. 5 ).
- the polymer structure input unit 47 a inputs the polymer structure A, and the polymer physical property prediction unit 47 b predicts the physical property value y A by using the regression model 33 f.
- the regression model 33 f is for only one physical property, the value of a predetermined physical property is predicted. If the regression model 33 f is obtained with respect to each of the various physical properties, the user may specify the polymer structure A and all physical properties or a specific physical property. In this case, the polymer physical property prediction unit 47 b predicts the physical property value 6 b by using the regression model 33 f corresponding to each physical property and the important substructure 33 e.
- the process of calculating the numbers of substructures 33 b in (c) of FIG. 5 and the process of calculating the number of atoms in (d) of FIG. 5 may be performed in any order. After calculating the number of atoms 33 c is performed, the numbers of substructures 33 b may be calculated, or the number of atoms 33 c and the numbers of substructures 33 b may be calculated in parallel. In the present embodiment, a “predicted value” of the physical property and a predicted “physical property value” are identical.
- the substructure number density calculating unit 43 d of the prediction processing unit 40 can recognize whether polymer structures are identical.
- FIG. 6 is a drawing illustrating an example of the number density. In FIG. 6 , the number of carbons of a polyethylene oxide is illustrated as an example.
- a notation of the structure B is longer and different from a notation of the structure A.
- polymers represented by the structure A and the structure B are identical.
- the number of carbons of the structure A is “2”
- the number of carbons of the structure B is “4”. Since the numbers of carbons of the structure A and the structure B are different, the polymers are mistakenly recognized as being different. This example indicates that when polymers having different lengths of the repeating unit are compared, the number of substructures cannot appropriately capture structural features of the polymer.
- the substructure number density calculating unit 43 d obtains the same substructure number density (carbon number density) “2 ⁇ 3” with respect to the structure A and the structure B.
- the dimension reduction unit 43 e and the regression model construction unit 43 f can correctly recognize that the structure A and the structure B represent the same polymer. Based on these examples, the inventors have found that by using the substructure number density 33 d , polymers having different lengths of the repeating unit can be treated equivalently.
- FIG. 7 is a drawing for describing the difference between when replication of the repeating unit is performed and when no replication is performed.
- a polyethylene oxide is used as an example.
- a repeating unit when replication is performed and a repeating unit when no replication is performed are identical.
- the repeating unit When the repeating unit is not replicated, there is no substructure “COC”, which is expected to exist, at both ends of the repeating unit. Thus, COC number density is “0”.
- the repeating unit is replicated and the right side of the repeating unit is linked to an oxygen atom on the left side of the next repeating unit. Two repeating units causes the substructure “COC” to appear and “1 ⁇ 6” is obtained with respect to the number density of “COC”, which is expected to exist.
- the regression model 33 f is obtained using the substructure number density 33 d obtained in such a manner, thereby improving the prediction accuracy of the existing technique.
- FIGS. 8 A and 8 B are flowcharts for describing the prediction process.
- a model generating process P 51 is performed by the model generator 41 .
- step S 511 in the model generator 41 , the model structure generator 43 a selects and reads one record from the polymer structure and physical property DB 31 , and obtains the repeating unit and the experimental value.
- step S 512 the model structure generator 43 a repeats an operation of replicating and linking the obtained repeating unit a predetermined number of times to generate the model structure 33 a.
- step S 513 the substructure number calculating unit 43 b calculates the number of substructures 33 b of the model structure 33 a by using a predetermined structure descriptor (e.g., ECFP).
- step S 514 the atom calculating unit 43 c calculates the number of atoms 33 c of the model structure 33 a .
- Step S 513 may be performed after step S 514 has been performed. Alternatively, steps S 513 and S 514 may be performed in parallel.
- step S 515 the substructure number density calculating unit 43 d calculates the substructure number density 33 d by dividing the number of substructures 33 b by the number of atoms 33 c .
- the numbers of substructures 33 b and the substructure number densities 33 d are represented by an n-dimensional vector.
- step S 516 the model generator 41 determines whether all records of the polymer structure and the physical property DB 31 have been completed. When all records have not been completed (NO in step S 516 ), the model generator 41 returns to step S 511 and performs a process similar to the process described above.
- the dimension reduction unit 43 e When all records have been completed (YES in step S 516 ), the dimension reduction unit 43 e performs a first regression analysis for obtaining a temporal regression model f′ by using the substructure number density 33 d corresponding to the important substructure 33 e as a variable x′ and an experimental value as y′. In step S 517 , the dimension reduction unit 43 e reduces the dimensions of the temporal regression model f′ by a predetermined dimension reduction method and obtains the important substructure 33 e.
- the regression model construction unit 43 f performs a second regression analysis.
- the regression model construction unit 43 f obtains the regression model f by using the substructure number density 33 d corresponding to the important substructure 33 e as the variable x and the experimental value as y.
- the experimental value y is a value determined by the polymer name and the physical property in the polymer structure and physical property DB 31 .
- the regression model f that is, the regression model 33 f , is stored in the storage unit 130 .
- the physical property prediction process P 55 is performed by the physical property prediction unit 45 .
- the polymer structure input unit 47 a receives the polymer structure 6 a in the prediction processing unit 40 (step S 521 )
- the model structure, the number of substructures, the number of atoms, and the substructure number density are obtained using the polymer structure 6 a as the repeating unit (step S 522 ).
- the model structure, the number of substructures, the number of atoms, and the substructure number density of the polymer structure 6 a are obtained by performing a process similar to the process from step S 512 to step S 515 in the model generating process P 51 .
- step S 523 the dimensions of the substructure number density of the polymer structure 6 a are reduced based on the important substructure 33 e obtained in step S 517 , and in step S 524 , the polymer physical property prediction unit 47 b predicts the physical property value 6 b by using the regression model f (i.e., the regression model 33 f stored in the storage unit 130 ) obtained in step S 518 .
- the obtained physical property value 6 b is sent to the terminal 3 or displayed on the display device 15 .
- FIG. 9 is a drawing illustrating an example of a data configuration of a regression model management table.
- a regression model management table 33 k is a table for managing the regression model 33 f for each physical property, and includes items such as the physical property, the regression model, and the important substructure.
- the physical property represents a name for specifying the physical property, such as the refractive index, and the glass transition point.
- the regression model represents the regression model 33 f corresponding to the physical property, constructed in the regression model construction unit 43 f.
- the important substructure specifies a valid vector of the vector of the substructure number density 33 d , obtained after dimension reduction (i.e., a valid vector after dimension reduction) for using the regression model 33 f .
- dimension reduction i.e., a valid vector after dimension reduction
- the item of the important substructure is omitted.
- the polymer physical property prediction unit 47 b obtains the regression model 33 f and the important substructure 33 e that are corresponding to the physical property to be predicted from the regression model management table 33 k.
- the inventors have verified the prediction accuracy of various functional configurations described below. According to verification results, the first functional configuration example described above can improve the prediction accuracy the most. Further, the inventors have verified that the prediction accuracy can be sufficiently improved even in a configuration in which either or both of the model structure generator 43 a and the dimension reduction unit 43 e are removed.
- a second functional configuration example is a functional configuration in which both of the model structure generator 43 a and the dimension reduction unit 43 e are removed
- a third functional configuration example is a functional configuration in which the model structure generator 43 a is removed
- a fourth functional configuration example is a functional configuration in which the dimension reduction unit 43 e is removed.
- processing units similar to the processing units of the first functional configuration example illustrated in FIG. 3 are referenced by the same reference numerals, and the detailed description is omitted.
- FIG. 10 is a drawing illustrating the second functional configuration example of the physical property prediction device.
- the model structure generator 43 a and the dimension reduction unit 43 e are removed from the first functional configuration example illustrated in FIG. 3 .
- the model structure 33 a and the important substructure 33 e are not generated.
- the substructure number calculating unit 43 b and the atom calculating unit 43 c obtains the number of substructures 33 b and the number of atoms 33 c by obtaining the repeating unit from the polymer structure and physical property DB 31 .
- the substructure number density calculating unit 43 d calculates the substructure number density 33 d . Then, the regression model construction unit 43 f obtains the regression model 33 f by using the calculated substructure number density 33 d and the experimental value of the physical property.
- the polymer physical property prediction unit 47 b calculates the number of substructures and the number of atoms by using the polymer structure 6 a without creating the model structure 33 a .
- the polymer physical property prediction unit 47 b obtains the substructure number density by dividing the obtained number of substructures by the number of atoms, and uses the substructure number density 33 d to obtain the property value 6 b by the regression model 33 f.
- the regression analysis is performed only once.
- the number of dimensions of the regression model 33 f is the same number as the number of dimensions of the substructure number densities 33 d , and the important substructure 33 e is not determined. However, if the values of the substructure number density 33 d are identical, even polymers with different lengths of the repeating unit can be treated equivalently, and the prediction accuracy can be sufficiently improved.
- FIG. 11 is a drawing illustrating the third functional configuration example of the physical property prediction device.
- the model structure generator 43 a is removed from the first functional configuration example illustrated in FIG. 3 .
- the model structure 33 a is not generated.
- the substructure number calculating unit 43 b and the atom calculating unit 43 c obtain the repeating unit from the polymer structure and physical property DB 31 to obtain the number of substructures 33 b and the number of atoms 33 c .
- the substructure number density calculating unit 43 d obtains the substructure number density 33 d .
- the dimension reduction unit 43 e obtains the important substructure 33 e and reduces the dimensions of the substructure number densities 33 d
- the regression model construction unit 43 f outputs the regression model 33 f.
- the polymer physical property prediction unit 47 b calculates the number of substructures and the number of atoms by using the polymer structure 6 a without generating the model structure 33 a . Then, the polymer physical, property prediction unit 47 b obtains the substructure number density by dividing the obtained number of substructures by the number of atoms, reduces the number of dimensions of the substructure number densities based on the substructure number density 33 d , and outputs the property value 6 b by using the regression model 33 f.
- the important substructure 33 e is determined by the dimension reduction unit 43 e , thereby improving the prediction accuracy of the regression model 33 f generated by the regression model construction unit 43 f.
- FIG. 12 is a drawing illustrating the fourth functional configuration example of the physical property prediction device.
- the dimension reduction unit 43 e is removed from the first functional configuration example illustrated in FIG. 3 .
- the important substructure 33 e is not generated.
- the model, structure generator 43 a generates the model structure 33 a , and the substructure number calculating unit 43 b and the atom calculating unit 43 c obtain the number of substructures 33 b and the number of atoms 33 c based on the model structure 33 a.
- the polymer physical property prediction unit 47 when the polymer structure input unit 47 a inputs the polymer structure 6 a , the polymer physical property prediction unit 47 b generates the model structure 33 a and calculates the number of substructures and the number of atoms by using the model structure 33 a . Then, the polymer physical property prediction unit 47 b obtains the substructure number density by dividing the obtained number of substructures by the number of atoms, and uses the substructure number density 33 d to obtain the physical property value 6 b by the regression model 33 f . The dimensions of the substructure number densities obtained from polymer structure 6 a are not reduced.
- the model structure 33 a and the substructure number density 33 d can improve the prediction accuracy of the regression model 33 f generated by the regression model construction unit 43 f.
- FIG. 13 is a drawing illustrating a functional configuration example of a physical property prediction device based on the existing technique.
- a physical property prediction device 9 has a functional configuration based on the existing technique.
- a prediction processing unit 90 of the physical property prediction device 9 includes a model generator 91 and a physical property prediction unit 95 .
- the model generator 91 is a processing unit that generates a regression model 83 f and includes a substructure number calculating unit 93 b and a regression model construction unit 93 f .
- the substructure number calculating unit 93 b obtains the repeating unit from the polymer structure and physical property DB 31 and stores the number of substructures 83 b in the storage unit 130 .
- the regression model construction unit 93 f constructs the regression model 83 f by performing a regression analysis using the number of substructures 83 b and an experimental value obtained from the polymer structure and physical property DB 31 , and stores the regression model 83 f in the storage unit 130 .
- the physical property prediction unit 95 is a processing unit that predicts the physical property value by applying the polymer structure 6 a desired to be processed by a user to the regression model 83 f , and includes a polymer structure input unit 97 a and a polymer physical property prediction unit 97 b .
- the polymer structure input unit 97 a stores the polymer structure 6 a in the storage unit 130 when receiving the polymer structure 6 a .
- the polymer physical property prediction unit 97 b obtains the number of substructures of the polymer structure 6 a and applies the obtained number of substructures to the regression model 83 f to obtain the predicted physical property value 6 b .
- the physical property value 6 b is presented to the user.
- Example 1 the second functional configuration example ( FIG. 10 ) in which the model structure generator 43 a and the dimension reduction unit 43 e are removed was used for the verification.
- the model structure 33 a is not generated.
- the regression analysis is performed only once by the regression model construction unit 43 f.
- ECFP4 In the above-described second functional configuration example, structures of 51 general infinite linear polymers, such as polyethylene and polypropylene, (i.e., repeated units) and experimental values of the refractive index were used as training data.
- ECFP4 was used as the structure descriptor.
- ECFP4 indicates ECFP having a radius of 4 and 1024 dimensions.
- ECPF4 will be referred to as an ECFP descriptor.
- the ECFP descriptor is represented by a vector, each dimension represents a substructure classification, and a value of each dimension corresponds the number of substructures.
- Software such as RDKit was used to generate the ECFP descriptor.
- the ECFP Descriptor is defined as a substructure number descriptor. Then, a substructure number density descriptor is obtained by dividing each element of the substructure number descriptor by the number of constituent atoms.
- the regression model 33 f was constructed using the substructure number density descriptor as an explanatory variable and the experimental value of the refractive index as an objective variable.
- a data set was divided into a training data set and a verification data set by leave-one-out cross-verification, a regression model was constructed after hyperparameter tuning was performed using the training data set, and the refractive index of a polymer that was not learned was predicted using the verification data set.
- the coefficient of determination R 2 and the root mean squared error (RMSE) were used as evaluation measures of the prediction accuracy. There are various definition equations of R 2 , but the following equation was used this time.
- the number of constituent atoms corresponds to the number of atoms of the repeating unit
- the substructure number descriptor corresponds to the numbers of substructures 33 b
- the substructure number density descriptor corresponds to the substructure number densities 33 d.
- Example 2 the third functional configuration example ( FIG. 11 ) in which the model structure generator 43 a was removed was used for the verification. Since the model structure 33 a was not generated, the substructure number density 33 d was obtained from the repeating unit of the polymer structure and physical property DB 31 . The regression analysis was performed twice by the dimension reduction unit 43 e and the regression model construction unit 43 f.
- the dimension reduction unit 43 e constructs a Lasso regression model (corresponding to the temporal regression model) from the substructure number density 33 d and the experimental value of the physical property of the polymer obtained from the polymer structure and physical property DB 31 , and performs the dimension reduction by excluding variables with coefficients of 0.
- the regression model construction unit 43 f the regression model 33 f was constructed by the Gaussian process regression in a manner similar to Example 1. Then, the prediction accuracy of the refractive index was verified by a method similar to the method of Example 1.
- Example 3 the fourth functional configuration example ( FIG. 12 ) in which the dimension reduction unit 43 e is removed was used for the verification.
- the important substructure 33 e was not obtained.
- the regression model 33 f with the number of dimensions of the substructures number densities 33 d was constructed.
- the substructure number descriptor and the number of atoms were calculated, and the substructure number density descriptor was calculated. After the substructure number density descriptor was calculated, a predicted value of the refractive index was obtained by a method similar to the method of Example 1, and the prediction accuracy was verified.
- Example 4 the first functional configuration example ( FIG. 3 ) including the important substructure 33 e and the dimension reduction unit 43 e was used for the verification.
- the dimension reduction unit 43 e constructed a Lasso regression model (corresponding to the temporal regression model) and constructed the regression model 33 f by the Gaussian process regression after reducing the dimensions by excluding variables with coefficients of 0. Then, the prediction accuracy of the refractive index was verified by a method similar to the method of Example 1.
- Comparative example 1 the existing functional configuration example ( FIG. 13 ) in which only the substructure number calculating unit 93 b and the regression model construction unit 93 f obtains the regression model 83 f was used for the verification.
- the substructure number calculating unit 93 b obtained the regression model 83 f from the number of substructures 83 b (i.e., the substructure number descriptor) obtained using the repeating unit and the experimental value of the refractive index.
- the regression model 83 f was constructed using the Gaussian process regression in a manner similar to the manner of Example 1. The predictive accuracy was verified in a manner similar to the manner of Example 1.
- FIG. 14 is a drawing illustrating an example of evaluation results.
- FIG. 14 illustrates the evaluation results of the prediction accuracy of the refractive index evaluated for each of Comparative example 1 and Examples 1 to 4 as described above. Results of R 2 and RMSE are shown as the evaluation results.
- RMSE compared with “0.084” in Comparative example 1, results of “0.027” in Example 1, “0.026” in Example 2, “0.021” in Example 3, and “0.018” in Example 4 are shown.
- the prediction accuracy can be significantly improved in all the functional configuration examples according to the present embodiment in the evaluation results.
- the substructure number density 33 d which the inventors have focused on, greatly contributes to the improvement of the prediction accuracy in the present embodiment.
- FIG. 15 illustrates an example of results of an evaluation performed by changing the physical property and the number of data in the data set in a manner similar to the manner of Example 4.
- FIG. 15 illustrates evaluation results of physical properties of Examples 5 to 9 performed by a respective number of data in a manner similar to the manner of Example 4. Results of R 2 are shown as the evaluation results.
- results of a refractive index, a glass transition point [k], a band gap [eV], a relative permittivity, a coefficient of linear expansion [10 ⁇ 5 /K], and a density [g/cm 3 ] are greater than or equal to 0.6.
- the prediction accuracy can be significantly improved.
- the physical property value can be predicted in advance using the physical property prediction device 100 , the polymer structure 6 a to be manufactured can be accurately selected. Thus, it is possible to reduce waste of costs, time, and so on related to polymer manufacturing.
- the physical properties of the polymer can be accurately predicted by generating the structure descriptor based on the polymer structure.
- FIG. is a drawing illustrating an example of a manufacturing method of the polymer.
- the manufacturing method of the polymer in the present embodiment includes a step of obtaining a polymer structure having a property value predicted by the polymer physical property prediction method according to the present embodiment (S 601 ) and a step of preparing raw materials for forming the polymer structure (S 602 ), and a step of causing the raw materials to react to obtain a polymer represented by the polymer structure (S 603 ).
- a polymer structure predicted to have a predetermined physical property value is appropriately selected from the input polymer structures.
- a polymer structure whose refractive index is within a predetermined range may be selected from the input polymer structures.
- step S 602 raw materials of monomers, oligomers, and the like are prepared as raw materials for forming the polymer structure selected in step S 601 .
- the selected polymer structure is polyethylene
- ethylene is prepared.
- step S 603 the raw materials prepared in S 602 are caused to react to obtain a polymer represented by the polymer structure selected in S 601 .
- ethylene is polymerized to form polyethylene.
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Abstract
Description
substructure number density=number of substructures÷number of atoms
The obtained
y=f(x)
By substituting the
y=f(x) (1)
When dimensions are not reduced, the number of substructure number density vector x is n, which is the number of dimensions. But after dimensions are reduced, the dimensions of the substructure number density vector x are n′. Because the predicted values are calculated using only the dimensions contributing to the prediction accuracy by using the
y A =f(x A) (2)
Here, yi is an experimental value of an ith polymer, y_bar is a measured average value, and fi is the predicted value of the ith polymer.
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