TWI731440B - Nucleic acid analysis apparatus and nucleic acid quantification method - Google Patents
Nucleic acid analysis apparatus and nucleic acid quantification method Download PDFInfo
- Publication number
- TWI731440B TWI731440B TW108137601A TW108137601A TWI731440B TW I731440 B TWI731440 B TW I731440B TW 108137601 A TW108137601 A TW 108137601A TW 108137601 A TW108137601 A TW 108137601A TW I731440 B TWI731440 B TW I731440B
- Authority
- TW
- Taiwan
- Prior art keywords
- nucleic acid
- microwell
- micropores
- array
- intensity
- Prior art date
Links
Images
Landscapes
- Apparatus Associated With Microorganisms And Enzymes (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Abstract
Description
本發明是有關於一種分析裝置及定量方法,且特別是有關於一種核酸分析裝置及核酸定量方法。The present invention relates to an analysis device and a quantitative method, and particularly relates to a nucleic acid analysis device and a nucleic acid quantitative method.
在目前的核酸定量的技術中,相較於使用即時定量聚合酶連鎖反應(real-time quantitative polymerase chain reaction)的相對定量的方法,數字聚合酶鏈鎖反應(digital polymerase chain reaction)則可提供較近似絕對定量的方式。In the current nucleic acid quantification technology, compared with the real-time quantitative polymerase chain reaction (real-time quantitative polymerase chain reaction) relative quantification method, the digital polymerase chain reaction (digital polymerase chain reaction) can provide more Approximately absolute quantitative approach.
然而,由於數字聚合酶鏈鎖反應的定量方法仍需利用泊松分佈(Poisson distribution)原理來推測出核酸的數量,因此,數字聚合酶鏈鎖反應的定量方法還不能算是絕對定量。此外,數字聚合酶鏈鎖反應的定量方法還有其缺點,例如:通常需進行32次或32次以上的聚合酶鏈鎖反應(polymerase chain reaction,PCR)並耗時約2.5~4小時。However, since the quantitative method of digital polymerase chain reaction still needs to use the Poisson distribution principle to estimate the amount of nucleic acid, the quantitative method of digital polymerase chain reaction cannot be regarded as absolute quantification. In addition, the quantitative method of digital polymerase chain reaction has its disadvantages. For example, it usually takes 32 or more polymerase chain reaction (PCR) and takes about 2.5 to 4 hours.
本發明提供一種核酸分析裝置及核酸定量方法,可具有較高的靈敏度、較少的檢測時間以及絕對定量的效果。The invention provides a nucleic acid analysis device and a nucleic acid quantification method, which can have higher sensitivity, less detection time and absolute quantification effects.
本發明的核酸分析裝置可用以定量樣品試劑中的核酸片段的數量。核酸分析裝置包括電路板、感測晶片、微孔陣列、溫度控制元件以及微流體元件。感測晶片配置於電路板上且包括多個影像感測器。微孔陣列配置於感測晶片上且包括多個微孔。各微孔對應於一個或多個影像感測器。溫度控制元件配置於電路板上。微流體元件配置於微孔陣列上且包括微流道。微流道與各微孔相連通。微流體元件與感測晶片分別位於微孔陣列的相對兩側。The nucleic acid analysis device of the present invention can be used to quantify the number of nucleic acid fragments in the sample reagent. The nucleic acid analysis device includes a circuit board, a sensing chip, a microwell array, a temperature control element, and a microfluidic element. The sensing chip is disposed on the circuit board and includes a plurality of image sensors. The micro-hole array is configured on the sensing chip and includes a plurality of micro-holes. Each microhole corresponds to one or more image sensors. The temperature control element is arranged on the circuit board. The microfluidic element is arranged on the micropore array and includes micro flow channels. The micro flow channel communicates with each micro hole. The microfluidic element and the sensing chip are respectively located on opposite sides of the microhole array.
在本發明的一實施例中,上述的核酸分析裝置更包括濾波器以及導線。濾波器配置於感測晶片上且位於微孔陣列與感測晶片之間。導線配置於電路板上。導線可用以電性連接感測晶片與電路板。In an embodiment of the present invention, the aforementioned nucleic acid analysis device further includes a filter and a wire. The filter is arranged on the sensing chip and located between the microhole array and the sensing chip. The wires are arranged on the circuit board. The wires can be used to electrically connect the sensing chip and the circuit board.
在本發明的一實施例中,上述的溫度控制元件包括多個加熱元件。加熱元件圍繞微孔陣列的各微孔,以調控各微孔的溫度。In an embodiment of the present invention, the above-mentioned temperature control element includes a plurality of heating elements. The heating element surrounds each micropore of the micropore array to regulate the temperature of each micropore.
在本發明的一實施例中,上述的微孔的數量大於樣品試劑中的核酸片段的數量。In an embodiment of the present invention, the number of the aforementioned micropores is greater than the number of nucleic acid fragments in the sample reagent.
在本發明的一實施例中,上述的各微孔內的核酸片段的數量為0至N個,且N為整數。In an embodiment of the present invention, the number of nucleic acid fragments in each microwell is 0 to N, and N is an integer.
在本發明的一實施例中,上述的各微孔與對應的影像感測器之間的距離小於等於10微米。In an embodiment of the present invention, the distance between each of the aforementioned microholes and the corresponding image sensor is less than or equal to 10 microns.
本發明的核酸定量方法可用以定量樣品試劑中的核酸片段的數量。核酸定量方法包括以下步驟。首先,提供上述的核酸分析裝置。接著,將樣品試劑及反應試劑分裝至微孔陣列的各微孔內,且反應試劑包括螢光標記。而後,對樣品試劑進行預定次數的聚合酶鏈鎖反應(polymerase chain reaction,PCR),以使螢光標記黏合至核酸片段並釋放出螢光物質。然後,偵測各微孔內的螢光物質的螢光訊號強度。然後,根據偵測到的螢光訊號強度,判斷各微孔內的核酸片段的數量。最後,加總各微孔內的核酸片段的數量,以得到樣品試劑中的核酸片段的數量。The nucleic acid quantification method of the present invention can be used to quantify the number of nucleic acid fragments in the sample reagent. The nucleic acid quantification method includes the following steps. First, the above-mentioned nucleic acid analysis device is provided. Then, the sample reagent and the reaction reagent are dispensed into each microwell of the microwell array, and the reaction reagent includes a fluorescent label. Then, a predetermined number of polymerase chain reaction (PCR) is performed on the sample reagent to make the fluorescent label adhere to the nucleic acid fragment and release the fluorescent substance. Then, the intensity of the fluorescent signal of the fluorescent substance in each microwell is detected. Then, according to the intensity of the detected fluorescent signal, the number of nucleic acid fragments in each microwell is determined. Finally, the number of nucleic acid fragments in each microwell is added to obtain the number of nucleic acid fragments in the sample reagent.
在本發明的一實施例中,上述的微流體元件更包括連通微流道的開口。將樣品試劑及反應試劑分裝至微孔陣列的各微孔內的步驟包括以下步驟。分別將樣品試劑及反應試劑注入至開口內。樣品試劑及反應試劑沿著微流體元件的微流道流入至微孔陣列的各微孔內。In an embodiment of the present invention, the aforementioned microfluidic element further includes an opening communicating with the microfluidic channel. The step of distributing sample reagents and reaction reagents into each microwell of the microwell array includes the following steps. The sample reagent and the reaction reagent are respectively injected into the opening. Sample reagents and reaction reagents flow into each microwell of the microwell array along the microfluidic channel of the microfluidic element.
在本發明的一實施例中,上述對樣品試劑進行預定次數的聚合酶鏈鎖反應的步驟包括以下步驟。利用溫度控制元件來調控微孔的溫度,以使微孔的溫度在45℃至95℃之間循環或使微孔的溫度維持在固定溫度,以進行聚合酶鏈鎖反應。In an embodiment of the present invention, the above step of performing polymerase chain reaction on the sample reagent a predetermined number of times includes the following steps. A temperature control element is used to regulate the temperature of the micropores so that the temperature of the micropores circulates between 45°C and 95°C or the temperature of the micropores is maintained at a fixed temperature to perform the polymerase chain reaction.
在本發明的一實施例中,上述偵測各微孔內的螢光物質的螢光訊號強度的步驟包括以下步驟。利用各微孔對應的一個或多個影像感測器,獨立地讀取微孔內的螢光物質的螢光訊號強度。In an embodiment of the present invention, the step of detecting the intensity of the fluorescent signal of the fluorescent substance in each microwell includes the following steps. One or more image sensors corresponding to each micro-hole are used to independently read the fluorescent signal intensity of the fluorescent substance in the micro-hole.
在本發明的一實施例中,上述根據偵測到的螢光訊號強度判斷各微孔內的核酸片段的數量的步驟包括以下步驟。首先,將偵測到的螢光訊號強度由低到高排序。接著,將螢光訊號強度最低的微孔內的核酸片段的數量表示為1個,且隨著排序越高,依序使對應的微孔內的核酸片段的數量增加1個。最後,將偵測不到螢光訊號強度的微孔內的核酸片段的數量表示為0個。In an embodiment of the present invention, the step of judging the number of nucleic acid fragments in each microwell based on the intensity of the detected fluorescent signal includes the following steps. First, sort the detected fluorescent signal intensity from low to high. Next, the number of nucleic acid fragments in the microwell with the lowest fluorescence signal intensity is represented as one, and as the ranking is higher, the number of nucleic acid fragments in the corresponding microwell is sequentially increased by one. Finally, the number of nucleic acid fragments in the microwell where the intensity of the fluorescent signal cannot be detected is expressed as zero.
基於上述,在本實施例的核酸分析裝置及核酸定量方法中,核酸分析裝置包括感測晶片、微孔陣列、溫度控制元件以及微流體元件。藉由微流體元件的配置,可使樣品試劑平均地分裝於微孔陣列的各微孔內。藉由感測晶片的配置,可提高樣品檢測的靈敏度,進而可減少檢測時間。此外,由於可根據偵測到的螢光訊號強度來判斷各微孔內的核酸片段的數量,因而使得本實施例提供的核酸定量方法具有可絕對定量的效果。Based on the foregoing, in the nucleic acid analysis device and nucleic acid quantification method of this embodiment, the nucleic acid analysis device includes a sensing wafer, a microwell array, a temperature control element, and a microfluidic element. With the configuration of the microfluidic element, the sample reagents can be evenly distributed in the microwells of the microwell array. With the configuration of the sensing chip, the sensitivity of sample detection can be improved, and the detection time can be reduced. In addition, since the number of nucleic acid fragments in each microwell can be judged according to the intensity of the detected fluorescent signal, the nucleic acid quantification method provided in this embodiment has an effect of absolute quantification.
圖1A繪示為本發明一實施例的核酸分析裝置的立體示意圖。為了附圖清楚及方便說明,圖1A省略繪示了若干元件,例如微流體元件150等。圖1B繪示為圖1A的核酸分析裝置沿剖面線A-A’的剖面示意圖。請同時參照圖1A與圖1B,本實施例的核酸分析裝置10包括電路板110、感測晶片120、微孔陣列130、溫度控制元件140以及微流體元件150。在本實施例中,電路板110可包括接合墊112。接合墊112可與外部的電子元件電性連接,並將核酸分析裝置10所偵測得到的訊號輸出至外部的電子元件(未繪示)。FIG. 1A is a three-dimensional schematic diagram of a nucleic acid analysis device according to an embodiment of the present invention. For clarity of the drawings and convenience of description, FIG. 1A omits several elements, such as the
此外,在本實施例中,核酸分析裝置10可用以定量樣品試劑160中的核酸片段162的數量。In addition, in this embodiment, the nucleic
感測晶片120配置於電路板110上,且感測晶片120包括畫素陣列以及多個接合墊124。在本實施例中,畫素陣列例如是包括368×184、1024×1024或4096×3072個畫素,但不以此為限。每個畫素包括影像感測器122,且影像感測器122可例如是以感光二極體(Photodiode)作為感測光訊號的元件,並可將光訊號轉換成電訊號而輸出成可讀取的模式。在一些實施例中,影像感測器122可例如是CMOS (Complementary Metal-Oxide Semiconductor)影像感測器或CCD (Charge Coupled Device)影像感測器,但不以此為限。在本實施例中,感測晶片120的材料可包括矽,但不以此為限。多個影像感測器122The
微孔陣列130配置於感測晶片120上,且微孔陣列130包括多個微孔132。在本實施例中,雖然圖1A示意地繪示微孔陣列130中的微孔132是以4×4的矩陣方式排列且微孔132的數量為16個,但本發明並不對微孔132的排列方式及其數量加以限制。也就是說,在一些實施例中,微孔陣列中的微孔也可以例如是以12×8、24×16或其他的矩陣方式進行排列,且微孔的數量也可以例如是96個、384個或其他的數量。在本實施例中,各微孔132對應於一個畫素(即影像感測器122),但不以此為限。也就是說,在其他實施例中,各微孔132也可以對應於二個畫素(即影像感測器122),如圖2所示。在一些實施例中,各微孔也可以對應於二個以上的畫素(即影像感測器)(未繪示)。舉例來說,當感測晶片120有368×184個畫素時,則至少要有67712個可對應的微孔132。在本實施例中,影像感測器122可用於感測微孔132內產生的螢光訊號。此外,在本實施例中,微孔陣列130的材質例如是矽或鋁,但不以此為限,只要為不透光且不會與生物分子及試劑反應的材質即可。所述生物分子及試劑例如是包括核酸、酵素、核苷三磷酸等試劑所含相關參與反應物質,但不以此為限。在一些實施例中,微孔陣列130的微孔132例如是以深反應離子式蝕刻(Deep reactive-ion etching,DRIE)製程對矽基板所挖出來的孔洞。The
請再參照圖1A與圖1B,在本實施例中,微孔132的數量例如是大於樣品試劑160中的核酸片段162的數量,如此一來可避免當樣品試劑160平均地分裝於各微孔132之後,各微孔132內有超過1個核酸片段162的情形發生。然而,在一些實施例中,雖然微孔132的數量大於樣品試劑160中的核酸片段162的數量,但依據泊松分佈(Poisson distribution)原理,當樣品試劑160平均地分裝於各微孔132之後,各微孔132內的核酸片段162的數量也可能為0至N個,且N為整數。1A and 1B again, in this embodiment, the number of
此外,在本實施例中,由於各微孔132與對應的影像感測器122之間的距離D例如是小於等於10微米,使得影像感測器122對微孔132內的螢光訊號更佳靈敏。具體來說,由於影像感測器122能接收的光子數目與距離D的平方成反比,其中所述距離D也是微孔132內的螢光訊號與對應的影像感測器122之間的距離。因此,相較於習知的微孔與影像感測器之間的距離為10公分或10公分以上,在相同感測面積的情況下,本實施例的影像感測器122能接收的光子數目為習知的影像感測器能接收的光子數目的10
8倍以上。換言之,相較於習知的核酸分析裝置,本實施例的核酸分析裝置10可偵側得到較低的螢光訊號強度,即本實施例的核酸分析裝置10可偵側的偵側極限較低且靈敏度較高。
In addition, in this embodiment, since the distance D between each micro-hole 132 and the
在本實施例中,溫度控制元件140配置於電路板110上。溫度控制元件140可包括多個加熱元件142。加熱元件142圍繞微孔陣列130的各微孔132,以調控各微孔132的溫度。在一些實施例中,溫度控制元件140的加熱元件142可以交錯排列的方式分佈在各微孔132的四周,以均勻且快速地調控各微孔132的溫度,進而使各微孔132的內的樣品試劑160可均勻且快速地達到反應的溫度。In this embodiment, the
在本實施例中,微流體元件150包括微流道152、第一開口154、第二開口156以及封蓋158。微流體元件150配置於微孔陣列130上。微流體元件150與感測晶片120分別位於微孔陣列130的相對兩側。詳細來說,在本實施例中,將封蓋158、封裝膠體159以及微孔陣列130組立後,可定義出一容置空間(即微流道152)。也就是說,微流道152位於封蓋158、封裝膠體159以及微孔陣列130之間。第一開口154與第二開口156為封蓋158上的開口,可分別作為注入樣品試劑160的入口與出口。此外,由於第一開口154與第二開口156分別與微流道152相連通,且微流道152與微孔陣列130的各微孔132相連通,因此,從第一開口154注入的樣品試劑160可直接流入到微流道152中,接著,使樣品試劑160可沿著微流道152而平均地分裝於各微孔132內。In this embodiment, the
在本實施例中,核酸分析裝置10可更包括濾波器170。濾波器170配置於感測晶片120上,且濾波器170位於微孔陣列130與感測晶片120之間。由於感測晶片120的影像感測器122可皆收任何來自微孔132內的光訊號,因此,可藉由濾波器170的設置將不要感測的光波段(例如:激發光)濾除,並使欲偵側的特定光波段通過所述濾波器170並被影像感測器122感測。因此,在本實施例中,濾波器170的設置可用來提高訊雜比(S/N ratio)。在一些實施例中,若欲偵側所有來自微孔132內的光訊號且沒有其他的雜訊干擾時,也可不需設置濾波器170。在一些實施例中,濾波器170可包括吸收型濾光片(absorption filter)172以及干涉型濾光片(interference filter)174。吸收型濾光片172例如是有濾光效果的鏡片,具有吸收光譜之特性。干涉型濾光片174可對光線產生干涉效應,以使所欲偵測的波長範圍的光線通過。In this embodiment, the nucleic
在本實施例中,核酸分析裝置10可更包括導線180。導線180配置於電路板110上。導線180可用以電性連接感測晶片120的接合墊124與電路板110的接合墊112,以將感測晶片120所偵測得到的訊號透過電路板110的接合墊112輸出至外部的電子元件。In this embodiment, the nucleic
簡言之,在本實施例的核酸分析裝置10中,可利用微流體元件150將樣品試劑160平均地分裝於微孔陣列130的各微孔132內,以使各微孔132內有不會有超過1個核酸片段162的情形發生。藉由將感測晶片120對應於各微孔132的配置,可提高樣品試劑160檢測的靈敏度,進而可減少檢測時間。In short, in the nucleic
圖3繪示為本發明一實施例的核酸定量方法的流程圖。請同時參照圖1A、圖1B以及圖3,本實施例的核酸定量方法可用以定量樣品試劑160中的核酸片段162的數量。在本實施例的核酸定量方法中,首先,進行步驟S210,提供核酸分析裝置10。核酸分析裝置10包括電路板110、感測晶片120、微孔陣列130、溫度控制元件140以及微流體元件150。FIG. 3 shows a flowchart of a nucleic acid quantification method according to an embodiment of the present invention. Please refer to FIG. 1A, FIG. 1B and FIG. 3 at the same time. The nucleic acid quantification method of this embodiment can be used to quantify the number of nucleic acid fragments 162 in the
接著,進行步驟S220,分別將樣品試劑160及反應試劑164平均地分裝至微孔陣列130的各微孔132內。詳細來說,在本實施例中,首先,將混合均勻的樣品試劑160(或混合均勻的反應試劑164)注入至第一開口154內,以使樣品試劑160(或反應試劑164)從第一開口154流入至與第一開口154連通的微流道152。接著,使樣品試劑160(或反應試劑164)沿著微流道152流入至與微流道152連通的各微孔132內,以使樣品試劑160(或反應試劑164)可平均地分裝至各微孔132內。在一些實施例中,在將樣品試劑160及反應試劑164分裝至各微孔132內之後,還可再於第一開口154加入礦物油,以使礦物油覆蓋微流道152內的微孔陣列130,以避免微孔132間試劑的互相干擾以及蒸發。在本實施例中,反應試劑164包括螢光標記166、聚合酶、引子、緩衝液等其中,螢光標記166包括螢光物質。在本實施例中,螢光標記166可黏合至核酸片段162的黏合處,且螢光標記166不會發螢光。只有當新合成的DNA複製到黏合處時,才會使螢光標記166中的螢光物質釋放,且所述螢光物質則可被激發而發出螢光訊號。Next, step S220 is performed, and the
而後,進行步驟S230,對樣品試劑160進行預定次數的聚合酶鏈鎖反應(polymerase chain reaction,PCR),以使螢光標記166黏合至核酸片段162並釋放出螢光物質。詳細來說,在本實施例中,可利用溫度控制元件140來調控微孔132的溫度,例如是使用加熱元件142對微孔132加熱,以使微孔132的溫度在45℃至95℃之間循環,或使微孔132的溫度維持在固定溫度(例如是60℃,但不以此為限),以進行聚合酶鏈鎖反應。此外,溫度控制元件140還可包括致冷晶片(未繪示),以達到快速降溫的效果。在本實施例中,預定次數例如是n次,其中n為整數,n大於等於1,且n小於32。在本實施例中,當進行第1次的聚合酶鏈鎖反應時,即可釋放出螢光物質;而之後每增加1次的聚合酶鏈鎖反應時,則可以倍數的方式增加所釋放的螢光物質。Then, step S230 is performed to perform polymerase chain reaction (PCR) on the sample reagent 160 a predetermined number of times, so that the
然後,進行步驟S240,偵測各微孔132內的螢光物質的螢光訊號強度。詳細來說,在本實施例中,在每1次的聚合酶鏈鎖反應之後,皆可利用各微孔132所對應的一個影像感測器122(或多個影像感測器122)來獨立地讀取該微孔132內的螢光物質的螢光訊號強度。也就是說,每個微孔132對應的影像感測器122可獨立地偵測該微孔132內的螢光物質的螢光訊號強度。此外,在一些實施例中,當每個微孔132所對應的影像感測器122為二個以上時,該微孔132所對應的的每個影像感測器122也可獨立地偵測不同的螢光訊號。Then, step S240 is performed to detect the fluorescent signal intensity of the fluorescent substance in each micro-hole 132. In detail, in this embodiment, after each polymerase chain reaction, one image sensor 122 (or multiple image sensors 122) corresponding to each microhole 132 can be used to independently The intensity of the fluorescent signal of the fluorescent substance in the
然後,進行步驟S250,根據偵測到的螢光訊號強度,判斷各微孔132內的核酸片段162的數量。詳細來說,在本實施例中,進行預定次數的聚合酶鏈鎖反應之後,應可在不同微孔132偵測到不同強度的螢光訊號,且不同強度的螢光訊號之間有倍數的關係。接著,將偵測到的螢光訊號強度由低到高排序時,可分類為1倍、2倍、3倍或4倍的螢光訊號強度。此外,由於當微孔132內的核酸片段162越多時,經由聚合酶鏈鎖反應之後所得到的螢光訊號強度則越高。因此,將螢光訊號強度最低(即1倍的螢光訊號強度)的微孔132內的核酸片段162的數量表示為1個,且隨著排序越高(即2倍、3倍、4倍的螢光訊號強度),依序使對應的微孔132內的核酸片段162的數量增加1個。舉例來說,在偵測到有1倍的螢光訊號強度的微孔132內應有1個核酸片段162;在偵測到有2倍的螢光訊號強度的微孔132內應有2個核酸片段162;在偵測到有3倍的螢光訊號強度的微孔132內應有3個核酸片段162;在偵測到有4倍的螢光訊號強度的微孔132內應有4個核酸片段162;而偵測不到有螢光訊號強度的微孔132內則應有0個核酸片段162。換言之,在本實施例中,可根據不同微孔132之間的螢光訊號強度的相對倍數關係來判斷各微孔132內的核酸片段162的數量。Then, step S250 is performed to determine the number of nucleic acid fragments 162 in each
最後,進行步驟S260,加總各微孔132內的核酸片段162的數量,以得到樣品試劑160中的核酸片段162的數量。此時,已定量完成樣品試劑160中的核酸片段162的數量,且所述數量應為樣品試劑160中的核酸片段162的絕對數量。Finally, step S260 is performed to add the number of nucleic acid fragments 162 in each microwell 132 to obtain the number of nucleic acid fragments 162 in the
簡言之,在本實施例的核酸定量方法中,由於可根據不同微孔132之間的螢光訊號強度的相對倍數關係來判斷各微孔132內的核酸片段162的數量,因而使得本實施例提供的核酸定量方法具有可絕對定量的效果。In short, in the nucleic acid quantification method of this embodiment, the number of nucleic acid fragments 162 in each
[[ 實驗例Experimental example 1]1]
圖4繪示為本發明一實驗例中,核酸片段於微孔陣列中的分佈情形。為了附圖清楚及方便說明,圖4省略繪示了核酸分析裝置10a的若干元件。Figure 4 illustrates the distribution of nucleic acid fragments in the microwell array in an experimental example of the present invention. For clarity of the drawings and convenience of description, FIG. 4 omits several elements of the nucleic
請參照圖4,本實施例的核酸分析裝置10a與圖1B的核酸分析裝置10相似,而二者之間的主要差異之處在於:核酸分析裝置10a的微孔陣列130a中的微孔132a是以8×4的矩陣方式排列,且微孔132的數量為32個,如圖4所示。Referring to FIG. 4, the nucleic
依據泊松分佈原理,當樣品試劑平均地分裝於各微孔132a之後,其分佈情形如圖4所示。舉例來說,各微孔132a內的核酸片段的數量可能為0至4個的機率較高,但也可能有5、6、7個或7個以上,只是5、6、7個或7個以上的機率幾乎接近0,故不列舉。According to the Poisson distribution principle, when the sample reagent is evenly distributed in the
[[ 實驗例Experimental example 2]2]
實例顯示分別將含有不同核酸片段數量的樣品試劑A、B、C、D、E裝填至含有20000個微孔陣列的晶片中。所述微孔陣列有20000個微孔,且所述樣品試劑A、B、C、D、E的核酸片段的總數量皆小於所述微孔陣列的微孔數。根據柏松分布可得到不同濃度的樣品試劑對於晶片微孔所能裝填核酸片段數目的分布狀況,其結果如表1所示,此表只列舉前最高機率的分布情況,即核酸片段數量0、1、2、3、4個的分布情況,而由於5個以上的數目的機率已經趨近於零,所以不列舉。The example shows that sample reagents A, B, C, D, and E containing different numbers of nucleic acid fragments are respectively loaded into a wafer containing 20,000 microwell arrays. The micropore array has 20,000 micropores, and the total number of nucleic acid fragments of the sample reagents A, B, C, D, and E is less than the number of micropores of the micropore array. According to the Baisong distribution, the distribution of the number of nucleic acid fragments that can be filled with different concentrations of sample reagents to the microwells of the wafer is shown. The results are shown in Table 1. This table only lists the distribution of the highest probability before, that is, the number of nucleic acid fragments is 0, The distribution of 1, 2, 3, and 4, and since the probability of the number of more than 5 has been close to zero, it is not listed.
表1
由表1的結果可知,在不考慮0個核酸片段的分佈情況下,當樣品試劑A、B、C、D、E分裝後,大部分的微孔只會有1個核酸片段,且沒有或只有少數的微孔會有2個或2個以上的核酸片段。From the results in Table 1, it can be seen that without considering the distribution of 0 nucleic acid fragments, when the sample reagents A, B, C, D, and E are aliquoted, most of the microwells will only have 1 nucleic acid fragment, and there is no Or only a few micropores will have 2 or more nucleic acid fragments.
綜上所述,在本實施例的核酸分析裝置及核酸定量方法中,核酸分析裝置包括感測晶片、微孔陣列、溫度控制元件以及微流體元件。藉由微流體元件的配置,可使樣品試劑平均地分裝於微孔陣列的各微孔內。藉由感測晶片的配置,可提高樣品檢測的靈敏度,進而可減少檢測時間。此外,由於可根據螢光訊號強度達到閥值時所對應的聚合酶鏈鎖反應的次數來判斷各微孔內的核酸片段的數量,因而使得本實施例提供的核酸定量方法具有可絕對定量的效果。In summary, in the nucleic acid analysis device and nucleic acid quantification method of this embodiment, the nucleic acid analysis device includes a sensing chip, a microwell array, a temperature control element, and a microfluidic element. With the configuration of the microfluidic element, the sample reagents can be evenly distributed in the microwells of the microwell array. With the configuration of the sensing chip, the sensitivity of sample detection can be improved, and the detection time can be reduced. In addition, since the number of nucleic acid fragments in each microwell can be judged according to the number of polymerase chain reactions corresponding to the intensity of the fluorescent signal reaching the threshold, the nucleic acid quantification method provided in this embodiment is capable of absolute quantification. effect.
10:核酸分析裝置 110:電路板 112:接合墊 120:感測晶片 122:影像感測器 124:接合墊 130:微孔陣列 132:微孔 140:溫度控制元件 142:加熱元件 150:微流體元件 152:微流道 154:第一開口 156:第二開口 158:封蓋 159:封裝膠體 160:樣品試劑 162:核酸片段 164:反應試劑 166:螢光標記 170:濾波器 172:吸收型濾光片 174:干涉型濾光片 180:導線 D:距離 S210、S220、S230、S240、S250、S260:步驟 10: Nucleic acid analysis device 110: Circuit board 112: Bonding pad 120: Sensing chip 122: Image sensor 124: Bonding pad 130: Microwell Array 132: Microporous 140: Temperature control element 142: Heating element 150: Microfluidic components 152: Micro channel 154: The first opening 156: Second opening 158: Cap 159: Encapsulation colloid 160: sample reagent 162: Nucleic Acid Fragment 164: Reagents 166: Fluorescent marker 170: Filter 172: Absorption filter 174: Interference filter 180: Wire D: distance S210, S220, S230, S240, S250, S260: steps
圖1A繪示為本發明一實施例的核酸分析裝置的上視示意圖。 圖1B繪示為圖1A的核酸分析裝置沿剖面線A-A’的剖面示意圖。 圖2繪示為本發明另一實施例的核酸分析裝置的剖面示意圖。 圖3繪示為本發明一實施例的核酸定量方法的流程圖。 圖4繪示為本發明一實驗例中,核酸片段於微孔陣列中的分佈情形。 FIG. 1A is a schematic top view of a nucleic acid analysis device according to an embodiment of the present invention. FIG. 1B is a schematic cross-sectional view of the nucleic acid analysis device of FIG. 1A along the section line A-A'. FIG. 2 is a schematic cross-sectional view of a nucleic acid analysis device according to another embodiment of the present invention. FIG. 3 shows a flowchart of a nucleic acid quantification method according to an embodiment of the present invention. Figure 4 illustrates the distribution of nucleic acid fragments in the microwell array in an experimental example of the present invention.
10:核酸分析裝置 110:電路板 112:接合墊 120:感測晶片 122:影像感測器 124:接合墊 130:微孔陣列 132:微孔 140:溫度控制元件 142:加熱元件 150:微流體元件 152:微流道 154:第一開口 156:第二開口 158:封蓋 159:封裝膠體 160:樣品試劑 162:核酸片段 164:反應試劑 166:螢光標記 170:濾波器 172:吸收型濾光片 174:干涉型濾光片 180:導線 D:距離 10: Nucleic acid analysis device 110: Circuit board 112: Bonding pad 120: Sensing chip 122: Image sensor 124: Bonding pad 130: Microwell Array 132: Microporous 140: Temperature control element 142: Heating element 150: Microfluidic components 152: Micro channel 154: The first opening 156: Second opening 158: Cap 159: Encapsulation colloid 160: sample reagent 162: Nucleic Acid Fragment 164: Reagents 166: Fluorescent marker 170: Filter 172: Absorption filter 174: Interference filter 180: Wire D: distance
Claims (10)
Priority Applications (1)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
TW108137601A TWI731440B (en) | 2019-10-18 | 2019-10-18 | Nucleic acid analysis apparatus and nucleic acid quantification method |
Applications Claiming Priority (1)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
TW108137601A TWI731440B (en) | 2019-10-18 | 2019-10-18 | Nucleic acid analysis apparatus and nucleic acid quantification method |
Publications (2)
Publication Number | Publication Date |
---|---|
TW202117022A TW202117022A (en) | 2021-05-01 |
TWI731440B true TWI731440B (en) | 2021-06-21 |
Family
ID=77020913
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
TW108137601A TWI731440B (en) | 2019-10-18 | 2019-10-18 | Nucleic acid analysis apparatus and nucleic acid quantification method |
Country Status (1)
Country | Link |
---|---|
TW (1) | TWI731440B (en) |
-
2019
- 2019-10-18 TW TW108137601A patent/TWI731440B/en active
Non-Patent Citations (3)
Title |
---|
Ahrberg et al., "Microwell Array-based Digital PCR for Influenza Virus Detection", BioChip Journal, Published online: 2 July 2019, 13(3), pp 269-276. |
Ahrberg et al., "Microwell Array-based Digital PCR for Influenza Virus Detection", BioChip Journal, Published online: 2 July 2019, 13(3), pp 269-276. Zhao et al., "Integration of CMOS Image Sensor and Microwell Array Using 3-D WLCSP Technology for Biodetector Application", IEEE Transactions on Components, Packaging and Manufacturing Technology, April 2019, 9(4), pp 624-632. * |
Zhao et al., "Integration of CMOS Image Sensor and Microwell Array Using 3-D WLCSP Technology for Biodetector Application", IEEE Transactions on Components, Packaging and Manufacturing Technology, April 2019, 9(4), pp 624-632. |
Also Published As
Publication number | Publication date |
---|---|
TW202117022A (en) | 2021-05-01 |
Similar Documents
Publication | Publication Date | Title |
---|---|---|
US6596483B1 (en) | System and method for detecting molecules using an active pixel sensor | |
KR102481859B1 (en) | Biosensors for biological or chemical analysis and methods of manufacturing the same | |
US9377407B2 (en) | Reaction monitoring | |
US9354159B2 (en) | Opto-fluidic system with coated fluid channels | |
JP5066607B2 (en) | Diagnostic device using image sensor and manufacturing method thereof | |
Lim et al. | Ultra-high throughput detection of single cell β-galactosidase activity in droplets using micro-optical lens array | |
CN101680839A (en) | biochip | |
US8753869B2 (en) | Cartridge for biochemical analyses, system for biochemical analyses, and method of carrying out a biochemical process | |
Ho et al. | CMOS spectrally-multiplexed Fret-on-a-Chip for DNA analysis | |
WO2023066311A1 (en) | Single molecule/single cell detection chip | |
TWI731440B (en) | Nucleic acid analysis apparatus and nucleic acid quantification method | |
US20100323926A1 (en) | Diagnosis device and method of manufacturing the diagnosis device | |
US20090022204A1 (en) | Method for temperature measurement in a microfluid channel of a microfluid device | |
US10018562B2 (en) | Biochip including side emitting-type light-emitting device and fabrication method thereof | |
US20230118814A1 (en) | Metabolite detection apparatus and method of detecting metabolites | |
CN112680314A (en) | Nucleic acid analysis device and method for determining nucleic acid | |
KR102496821B1 (en) | Microfluidic device and sample analysis method | |
TWI825609B (en) | Biomolecular image sensor and method thereof for detecting biological molecules | |
RU2815011C2 (en) | Sensor with active surface | |
Schäfer et al. | A monolithically integrated CMOS labchip using sensor devices | |
CN114540187A (en) | Integrated handheld digital nucleic acid detector and nucleic acid detection method | |
CN117615849A (en) | Flexible foil, microfluidic cartridge and microfluidic assembly | |
Yamasaki et al. | Proposal for a Filterless Fluorescence Sensor for SNP Genotyping. |