TWI568852B - A colorectal cancer screening kit - Google Patents
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Description
本發明關於一種大腸癌篩查試劑盒。 The present invention relates to a colorectal cancer screening kit.
大腸癌,是最常見的惡性腫瘤之一,其在美國人腫瘤發病率中排名第五,在中國人腫瘤發病率中排名第四,是歐洲人第三大致死腫瘤疾病。當大腸癌處於早期時,其治癒率較高,大腸癌的早期篩查是成功治療和患者存活的關鍵,也是公共衛生領域的一大挑戰。 Colorectal cancer is one of the most common malignant tumors. It ranks fifth in the incidence of cancer in the United States and fourth in the incidence of Chinese cancer. It is the third most common cancer in Europe. When colorectal cancer is in the early stage, its cure rate is high. Early screening of colorectal cancer is the key to successful treatment and patient survival, and it is also a major challenge in the field of public health.
傳統檢測方法包括大便潛血實驗、乙狀結腸鏡檢查、結腸鏡檢查、雙重對比鋇餐檢查和直腸指檢。這些檢查的患者依從性低,操作複雜。需要尋找患者依從性高,操作簡便的方法。 Traditional methods of detection include fecal occult blood test, sigmoidoscopy, colonoscopy, double contrast barium examination, and digital rectal examination. These examinations have low patient compliance and complex procedures. It is necessary to find ways to ensure patient compliance and ease of operation.
尋找外周血中的生物標誌物,檢測大腸癌是近年來比較熱門的方法。Han等比較101例大腸癌和110例對照的外周血基因表達譜,構建基於5個基因的預測模型,模型的敏感度和特異度分別為88%和64%(Han M,Liew C T,Zhang H W,et al.Novel blood-based,five-gene biomarker set for the detection of colorectal cancer[J].Clin Cancer Res,2008,14(2):455-460.)。Marshall等從314例大腸癌和328例正常對照研究中發現7個顯著基因,預測模型的敏感度和特異度分別為 72%和70%(Marshall K W,Mohr S,Khettabi F E,et al.A blood-based biomarker panel for stratifying current risk for colorectal cancer[J].Int J Cancer,2010,126(5):1177-1186);Rosenthal等比較314例大腸癌和328例正常對照的外周血基因表達譜,構建了202個顯著基因的預測模型,模型的敏感度和特異度分別為90%和88%(Rosenthal A,Nuernberg D,Pross M,et al.Detector-C:A blood-based IVD with high sensitivity and specificity for early detection of colorectal cancer [J].J Clin Oncol 28:15s,2010(suppl;abstr 3580)。上述檢測方法中,檢測基因數目較少時,敏感度和特異度低,而敏感度和特異度較高時,檢測基因數目過大,成本高。 Finding biomarkers in peripheral blood and detecting colorectal cancer is a popular method in recent years. Han et al. compared the gene expression profiles of 101 cases of colorectal cancer and 110 controls, and constructed a prediction model based on 5 genes. The sensitivity and specificity of the model were 88% and 64%, respectively (Han M, Liew CT, Zhang HW). , et al. Novel blood-based, five-gene biomarker set for the detection of colorectal cancer [J]. Clin Cancer Res, 2008, 14(2): 455-460.). Marshall et al found 7 significant genes from 314 cases of colorectal cancer and 328 normal control studies. The sensitivity and specificity of the prediction model were 72% and 70% (Marshall KW, Mohr S, Khettabi FE, et al. A blood-based biomarker panel for stratifying current risk for colorectal cancer [J]. Int J Cancer, 2010, 126(5): 1177-1186) Rosenthal et al. compared the peripheral blood gene expression profiles of 314 colorectal cancers and 328 normal controls, and constructed a prediction model of 202 significant genes with sensitivity and specificity of 90% and 88%, respectively (Rosenthal A, Nuernberg D , Pross M, et al. Detector-C: A blood-based IVD with high sensitivity and specificity for early detection of colorectal cancer [J]. J Clin Oncol 28:15s, 2010 (suppl; abstr 3580). When the number of detection genes is small, the sensitivity and specificity are low, and when the sensitivity and specificity are high, the number of detection genes is too large and the cost is high.
為了解決上述問題,本發明提供了一種新的大腸癌篩查試劑盒。 In order to solve the above problems, the present invention provides a novel colorectal cancer screening kit.
一種大腸癌篩查試劑盒,它包括檢測如下18個基因中的任意一個或者多個基因的表達水平的相關試劑:DUSP2,如SEQ ID NO:1所示;NEAT1,如SEQ ID NO:2所示;MYBL1,如SEQ ID NO:3或者4所示;ITGAM,如SEQ ID NO:5或者6所示;P2RY10,如SEQ ID NO:7或者8所示;GZMB,如SEQ ID NO:9所示;SH2D2A,如SEQ ID NO:10、11、12或者13所示;PDE4D,如SEQ ID NO:14、15、16、17、18、19、20、21或者22所示;FAM198B,如SEQ ID NO:23、24或者25所示;GLT25D2,如SEQ ID NO:26所示;CD36,如SEQ ID NO:27、28、29、30或者31所示;NUDT16,如SEQ ID NO:32或 者33所示;FKBP5,如SEQ ID NO:34、35或者36所示;ITPRIPL2,如SEQ ID NO:37所示;IL1B,如SEQ ID NO:38所示;DHRS13,如SEQ ID NO:39所示;PDZK1IP1,如SEQ ID NO:40所示;VSIG10,如SEQ ID NO:41所示。 A colorectal cancer screening kit comprising a reagent for detecting the expression level of any one or more of the following 18 genes: DUSP2, as shown in SEQ ID NO: 1; NEAT1, as SEQ ID NO: 2 MYBL1, as shown in SEQ ID NO: 3 or 4; ITGAM, as shown in SEQ ID NO: 5 or 6; P2RY10, as shown in SEQ ID NO: 7 or 8; GZMB, as SEQ ID NO: 9 SH2D2A, as shown in SEQ ID NO: 10, 11, 12 or 13; PDE4D, as shown in SEQ ID NO: 14, 15, 16, 17, 18, 19, 20, 21 or 22; FAM198B, as SEQ ID NO: 23, 24 or 25; GLT25D2, as shown in SEQ ID NO: 26; CD36, as shown in SEQ ID NO: 27, 28, 29, 30 or 31; NUDT16, as SEQ ID NO: 32 or As indicated by 33; FKBP5, as set forth in SEQ ID NO: 34, 35 or 36; ITPRIPL2, as set forth in SEQ ID NO: 37; IL1B, as set forth in SEQ ID NO: 38; DHRS13, as SEQ ID NO: 39 Shown; PDZK1IP1, as set forth in SEQ ID NO: 40; VSIG10, as set forth in SEQ ID NO:41.
其中,所述試劑為檢測所述基因轉錄的RNA,特別是mRNA的量的試劑。 Wherein the reagent is an agent that detects the amount of RNA, particularly mRNA, transcribed by the gene.
其中,所述試劑為檢測與所述mRNA互補的cDNA的量的試劑。 Wherein the reagent is an agent that detects the amount of cDNA complementary to the mRNA.
其中,所述試劑為檢測與所述cDNA互補的cRNA的量的試劑。 Wherein the reagent is an agent that detects the amount of cRNA complementary to the cDNA.
其中,所述試劑為探針。 Wherein the reagent is a probe.
其中,所述試劑為檢測所述基因編碼的多肽的量的試劑。 Wherein the reagent is an agent that detects the amount of the polypeptide encoded by the gene.
其中,所述試劑為抗體、抗體片段或者親和性蛋白。 Wherein the reagent is an antibody, an antibody fragment or an affinity protein.
本發明還提供了如下18個基因中任意一個或者任意多個基因在製備大腸癌篩查試劑中的用途:DUSP2,如SEQ ID NO:1所示;NEAT1,如SEQ ID NO:2所示;MYBL1,如SEQ ID NO:3或者4所示;ITGAM,如SEQ ID NO:5或者6所示;P2RY10,如SEQ ID NO:7或者8所示;GZMB,如SEQ ID NO:9所示;SH2D2A,如SEQ ID NO:10、11、12或者13所示;PDE4D,如SEQ ID NO:14、15、16、17、18、19、20、21或者22所示;FAM198B,如SEQ ID NO:23、24或者25所示;GLT25D2,如SEQ ID NO:26所示;CD36,如SEQ ID NO:27、 28、29、30或者31所示;NUDT16,如SEQ ID NO:32或者33所示;FKBP5,如SEQ ID NO:34、35或者36所示;ITPRIPL2,如SEQ ID NO:37所示;IL1B,如SEQ ID NO:38所示;DHRS13,如SEQ ID NO:39所示;PDZK1IP1,如SEQ ID NO:40所示;VSIG10,如SEQ ID NO:41所示。 The invention also provides the use of any one or any of the following 18 genes in the preparation of a colorectal cancer screening reagent: DUSP2, as shown in SEQ ID NO: 1; NEAT1, as shown in SEQ ID NO: 2; MYBL1, as set forth in SEQ ID NO: 3 or 4; ITGAM, as set forth in SEQ ID NO: 5 or 6; P2RY10, as set forth in SEQ ID NO: 7 or 8; GZMB, as set forth in SEQ ID NO: 9. SH2D2A, as shown in SEQ ID NO: 10, 11, 12 or 13; PDE4D, as shown in SEQ ID NO: 14, 15, 16, 17, 18, 19, 20, 21 or 22; FAM198B, as SEQ ID NO : 23, 24 or 25; GLT25D2, as shown in SEQ ID NO: 26; CD36, as SEQ ID NO: 27, 28, 29, 30 or 31; NUDT16, as shown in SEQ ID NO: 32 or 33; FKBP5, as shown in SEQ ID NO: 34, 35 or 36; ITPRIPL2, as shown in SEQ ID NO: 37; IL1B , as shown in SEQ ID NO: 38; DHRS13, as set forth in SEQ ID NO: 39; PDZK1IP1, as set forth in SEQ ID NO: 40; VSIG10, as set forth in SEQ ID NO:41.
其中,所述試劑是檢測18個基因中的任意一個或者多個基因的表達水平的相關試劑。 Wherein the reagent is a related reagent for detecting the expression level of any one or more of the 18 genes.
其中,所述試劑還包括大腸癌陽性樣品和大腸癌陰性樣品。 Wherein, the reagent further comprises a colorectal cancer positive sample and a colorectal cancer negative sample.
其中,所述試劑為檢測所述基因轉錄的RNA,特別是mRNA的量的試劑。 Wherein the reagent is an agent that detects the amount of RNA, particularly mRNA, transcribed by the gene.
其中,所述試劑為檢測與所述mRNA互補的cDNA的量的試劑。 Wherein the reagent is an agent that detects the amount of cDNA complementary to the mRNA.
其中,所述試劑為檢測與所述cDNA互補的cRNA的量的試劑。 Wherein the reagent is an agent that detects the amount of cRNA complementary to the cDNA.
其中,所述試劑為探針。 Wherein the reagent is a probe.
其中,所述試劑為檢測所述基因編碼的多肽的量的試劑。 Wherein the reagent is an agent that detects the amount of the polypeptide encoded by the gene.
其中,所述試劑為抗體或者親和性蛋白。 Wherein the reagent is an antibody or an affinity protein.
本發明檢測人體樣本,特別是人血液樣本中基因表達的方法,包括:(1)測定受試者血樣的基因組中任意一個或者任意多個基因轉錄的RNA的水平,所述基因組包括如下基因:DUSP2,如SEQ ID NO:1所示;NEAT1,如SEQ ID NO:2所示;MYBL1,如SEQ ID NO:3或者4所示;ITGAM,如SEQ ID NO:5或者6所示;P2RY10,如SEQ ID NO:7或者8所示;GZMB,如SEQ ID NO:9所示;SH2D2A,如SEQ ID NO:10、11、12或者13所示;PDE4D,如SEQ ID NO:14、15、16、17、18、19、20、21或者22所示;FAM198B,如SEQ ID NO:23、24或者25所示;GLT25D2,如SEQ ID NO:26所示;CD36,如SEQ ID NO:27、28、29、30或者31所示;NUDT16,如SEQ ID NO:32或者33所示;FKBP5,如SEQ ID NO:34、35或者36所示;ITPRIPL2,如SEQ ID NO:37所示;IL1B,如SEQ ID NO:38所示;DHRS13,如SEQ ID NO:39所示;PDZK1IP1,如SEQ ID NO:40所示;VSIG10,如SEQ ID NO:41所示;(2)檢測受試者血樣中的基因表達。 The method for detecting gene expression in a human blood sample, particularly a human blood sample, comprises: (1) determining the level of RNA transcribed by any one or any of a plurality of genes in a genome of a blood sample of the subject, the genome comprising the following genes: DUSP2, as shown in SEQ ID NO: 1; NEAT1, as shown in SEQ ID NO: 2; MYBL1, as shown in SEQ ID NO: 3 or 4; ITGAM, such as SEQ ID NO: 5 or 6; P2RY10, as shown in SEQ ID NO: 7 or 8; GZMB, as shown in SEQ ID NO: 9; SH2D2A, as shown in SEQ ID NO: 10, 11, 12 or 13; PDE4D, as shown in SEQ ID NO: 14, 15, 16, 17, 18, 19, 20, 21 or 22; FAM198B, as shown in SEQ ID NO: 23, 24 or 25; GLT25D2, as SEQ ID NO: 26 Shown; CD36, as set forth in SEQ ID NO: 27, 28, 29, 30 or 31; NUDT16, as set forth in SEQ ID NO: 32 or 33; FKBP5, as set forth in SEQ ID NO: 34, 35 or 36; ITPRIPL2, as set forth in SEQ ID NO: 37; IL1B, as set forth in SEQ ID NO: 38; DHRS13, as set forth in SEQ ID NO: 39; PDZK1IP1, as set forth in SEQ ID NO: 40; VSIG10, as SEQ ID NO: :41; (2) detecting gene expression in the blood sample of the subject.
優選地,所述步驟(1)是測定基因組中任意六個基因轉錄的RNA的水平。所述六個基因為NEAT1、FAM198B、ITGAM、MYBL1、PDZK1TP1和VSIG10。 Preferably, said step (1) is to determine the level of RNA transcribed from any of the six genes in the genome. The six genes are NEAT1, FAM198B, ITGAM, MYBL1, PDZK1TP1, and VSIG10.
優選地,所述步驟(1)是測定基因組中18個基因轉錄的RNA的水平。 Preferably, said step (1) is to determine the level of RNA transcribed from 18 genes in the genome.
其中,所述樣本是大腸癌陽性樣本。 Among them, the sample is a positive sample of colorectal cancer.
其中,所述樣本是大腸癌陰性樣本。 Wherein the sample is a negative sample of colorectal cancer.
其中,所述步驟(1)使用至少一個寡核苷酸。 Wherein said step (1) uses at least one oligonucleotide.
其中,一個寡核苷酸僅與一個基因轉錄的RNA雜交,和/或可以與所述基因轉錄的RNA互補的cDNA雜交。 Among them, one oligonucleotide hybridizes only to one gene-transcribed RNA, and/or can hybridize to a cDNA complementary to the RNA transcribed by the gene.
其中,所述步驟(1)包括如下步驟:a、擴增所述基因轉錄的RNA,得擴增產物;b、使用至少一個引物檢測步驟a所得擴增產物的量。 Wherein, the step (1) comprises the steps of: a, amplifying the RNA transcribed by the gene to obtain an amplification product; b, detecting the amount of the amplification product obtained in the step a using at least one primer.
其中,所述步驟(1)包括如下步驟:i、用至少一個探針與所述基因轉錄的RNA互補的cDNA雜交,得雜交產物;ii、檢測步驟i所得雜交產物的量。 Wherein, the step (1) comprises the steps of: i. hybridizing with a cDNA complementary to the RNA transcribed by the gene to obtain a hybridization product; ii, detecting the amount of the hybridization product obtained in the step i.
其中,所述步驟(1)包括擴增所述基因轉錄的RNA的方法。 Wherein said step (1) comprises a method of amplifying RNA transcribed by said gene.
其中,所述步驟(1)包括檢測所述基因轉錄的RNA互補的cDNA的量的方法。 Wherein the step (1) comprises a method of detecting the amount of cDNA complementary to the RNA transcribed by the gene.
其中,所述步驟(1)至少使用一個探針。 Wherein the step (1) uses at least one probe.
其中,所述步驟(1)至少使用一個引物。 Wherein the step (1) uses at least one primer.
本發明寡核苷酸,它僅與一個基因轉錄的RNA雜交,和/或可以與所述基因轉錄的RNA互補的cDNA雜交,所述屬於一個基因組的基因由如下基因組成:DUSP2,如SEQ ID NO:1所示;NEAT1,如SEQ ID NO:2所示;MYBL1,如SEQ ID NO:3或者4所示;ITGAM,如SEQ ID NO:5或者6所示;P2RY10,如SEQ ID NO:7或者8所示;GZMB,如SEQ ID NO:9所示;SH2D2A,如SEQ ID NO:10、11、12或者13所示;PDE4D,如SEQ ID NO:14、15、16、17、18、19、20、21或者22所示;FAM198B,如SEQ ID NO:23、24或者25所示;GLT25D2,如SEQ ID NO:26所示;CD36,如SEQ ID NO:27、28、29、30或者31所示;NUDT16,如SEQ ID NO:32或者33所示;FKBP5,如SEQ ID NO:34、35或者36所示;ITPRIPL2,如SEQ ID NO:37所示;IL1B,如SEQ ID NO:38所示;DHRS13,如SEQ ID NO:39所示;PDZK1IP1,如SEQ ID NO:40所示;VSIG10,如SEQ ID NO:41所示。 An oligonucleotide of the present invention which hybridizes only to RNA transcribed from one gene and/or which can hybridize to a cDNA complementary to the RNA transcribed by said gene, said gene belonging to a genome consisting of the following genes: DUSP2, such as SEQ ID NO: 1; NEAT1, as shown in SEQ ID NO: 2; MYBL1, as shown in SEQ ID NO: 3 or 4; ITGAM, as shown in SEQ ID NO: 5 or 6; P2RY10, as SEQ ID NO: 7 or 8; GZMB, as shown in SEQ ID NO: 9; SH2D2A, as shown in SEQ ID NO: 10, 11, 12 or 13; PDE4D, as SEQ ID NO: 14, 15, 16, 17, 18 , 19, 20, 21 or 22; FAM198B, as shown in SEQ ID NO: 23, 24 or 25; GLT25D2, as shown in SEQ ID NO: 26; CD36, as SEQ ID NO: 27, 28, 29, 30 or 31; NUDT16, as shown in SEQ ID NO: 32 or 33; FKBP5, as shown in SEQ ID NO: 34, 35 or 36; ITPRIPL2, as shown in SEQ ID NO: 37; IL1B, as SEQ ID NO: 38; DHRS13, as shown in SEQ ID NO: 39; PDZK1IP1, as shown in SEQ ID NO: 40; VSIG10, such as SEQ ID NO: 41.
所述的寡核苷酸選自SEQ ID NO.42~77所示的核苷酸序列。 The oligonucleotide is selected from the nucleotide sequences set forth in SEQ ID NOS. 42-77.
本發明檢測人體樣本,特別是人血液樣本中基因表達的試劑盒,包括18個基因的18種表達產物的特異配偶體,每個配偶體與每個基因特定配合,所述18個基因如下所示:DUSP2,如SEQ ID NO:1所示;NEAT1,如SEQ ID NO:2所示;MYBL1,如SEQ ID NO:3或者4所示;ITGAM,如SEQ ID NO:5或者6所示;P2RY10,如SEQ ID NO:7或者8所示;GZMB,如SEQ ID NO:9所示;SH2D2A,如SEQ ID NO:10、11、12或者13所示;PDE4D,如SEQ ID NO:14、15、16、17、18、19、20、21或者22所示;FAM198B,如SEQ ID NO:23、24或者25所示;GLT25D2,如SEQ ID NO:26所示;CD36,如SEQ ID NO:27、28、29、30或者31所示;NUDT16,如SEQ ID NO:32或者33所示;FKBP5,如SEQ ID NO:34、35或者36所示;ITPRIPL2,如SEQ ID NO:37所示;IL1B,如SEQ ID NO:38所示;DHRS13,如SEQ ID NO:39所示;PDZK1IP1,如SEQ ID NO:40所示;VSIG10,如SEQ ID NO:41所示。 The invention relates to a kit for detecting gene expression in a human body sample, in particular a human blood sample, comprising a specific partner of 18 expression products of 18 genes, each partner specifically cooperating with each gene, and the 18 genes are as follows Show: DUSP2, as shown in SEQ ID NO: 1; NEAT1, as shown in SEQ ID NO: 2; MYBL1, as shown in SEQ ID NO: 3 or 4; ITGAM, as shown in SEQ ID NO: 5 or 6; P2RY10, as set forth in SEQ ID NO: 7 or 8; GZMB, as set forth in SEQ ID NO: 9; SH2D2A, as set forth in SEQ ID NO: 10, 11, 12 or 13; PDE4D, as SEQ ID NO: 14, 15, 16, 17, 18, 19, 20, 21 or 22; FAM198B, as shown in SEQ ID NO: 23, 24 or 25; GLT25D2, as shown in SEQ ID NO: 26; CD36, as SEQ ID NO : 27, 28, 30, 30 or 31; NUDT16, as shown in SEQ ID NO: 32 or 33; FKBP5, as shown in SEQ ID NO: 34, 35 or 36; ITPRIPL2, as set forth in SEQ ID NO: 37 IL1B, as set forth in SEQ ID NO: 38; DHRS13, as set forth in SEQ ID NO: 39; PDZK1IP1, as set forth in SEQ ID NO: 40; VSIG10, as set forth in SEQ ID NO:41.
其中,所述特異配偶體是寡核苷酸,特別是探針和/或引物。 Wherein the specific partner is an oligonucleotide, in particular a probe and/or a primer.
其中,所述特異配偶體選自SEQ ID NO.42~77所示的核苷酸序列的集合。 Wherein the specific partner is selected from the group consisting of the nucleotide sequences shown in SEQ ID NOS. 42-77.
其中,所述特異配偶體包含抗體和/或親和性蛋白。 Wherein the specific partner comprises an antibody and/or an affinity protein.
本發明通過血液樣本體外篩查人大腸癌患病風險的方法,它包括如下步驟:a)取血液樣本,檢測如下18個基因中任意一個或者任意多個基因的表達產物的量:DUSP2,如SEQ ID NO:1所示;NEAT1,如SEQ ID NO:2所示;MYBL1,如SEQ ID NO:3或者4所示;ITGAM,如SEQ ID NO:5或者6所示;P2RY10,如SEQ ID NO:7或者8所示;GZMB,如SEQ ID NO:9所示;SH2D2A,如SEQ ID NO:10、11、12或者13所示;PDE4D,如SEQ ID NO:14、15、16、17、18、19、20、21或者22所示;FAM198B,如SEQ ID NO:23、24或者25所示;GLT25D2,如SEQ ID NO:26所示;CD36,如SEQ ID NO:27、28、29、30或者31所示;NUDT16,如SEQ ID NO:32或者33所示;FKBP5,如SEQ ID NO:34、35或者36所示;ITPRIPL2,如SEQ ID NO:37所示;IL1B,如SEQ ID NO:38所示;DHRS13,如SEQ ID NO:39所示;PDZK1IP1,如SEQ ID NO:40所示;VSIG10,如SEQ ID NO:41所示;b)將步驟a)所得表達產物的量與大腸癌陽性樣品以及大腸癌陰性樣品的表達產物的量進行對比,所述大腸癌陽性樣品來自確診的大腸癌患者,所述大腸癌陰性樣品來自已證實的非大腸癌個體;c)根據步驟b)的分析結果作出判斷:如果步驟a)所得表達產物的量與大腸癌陽性樣品的表達產物的量相近或相同,則診斷為大腸癌患者;如果步驟a)所得表達產物的量與大腸癌陰性樣品的表達 產物的量相近或相同,則診斷為非大腸癌患者。 The invention discloses a method for screening the risk of human colorectal cancer by blood sample in vitro, which comprises the following steps: a) taking a blood sample and detecting the amount of the expression product of any one or any of the following 18 genes: DUSP2, such as SEQ ID NO: 1; NEAT1, as shown in SEQ ID NO: 2; MYBL1, as shown in SEQ ID NO: 3 or 4; ITGAM, as shown in SEQ ID NO: 5 or 6; P2RY10, as SEQ ID NO: 7 or 8; GZMB, as shown in SEQ ID NO: 9; SH2D2A, as shown in SEQ ID NO: 10, 11, 12 or 13; PDE4D, as SEQ ID NO: 14, 15, 16, 17 , 18, 19, 20, 21 or 22; FAM198B, as shown in SEQ ID NO: 23, 24 or 25; GLT25D2, as shown in SEQ ID NO: 26; CD36, as SEQ ID NO: 27, 28, 29, 30 or 31; NUDT16, as shown in SEQ ID NO: 32 or 33; FKBP5, as shown in SEQ ID NO: 34, 35 or 36; ITPRIPL2, as shown in SEQ ID NO: 37; IL1B, eg SEQ ID NO: 38; DHRS13, as set forth in SEQ ID NO: 39; PDZK1IP1, as set forth in SEQ ID NO: 40; VSIG10, as set forth in SEQ ID NO: 41; b) expression product obtained in step a) Amount Comparison of the amount of expression product of a colorectal cancer positive sample from a confirmed colorectal cancer patient, and a positive colorectal cancer negative sample from a confirmed non-colorectal cancer individual; c) according to step b The analysis result is judged: if the amount of the expression product obtained in step a) is similar to or the same as the amount of the expression product of the colorectal cancer positive sample, it is diagnosed as a colorectal cancer patient; if the amount of the expression product obtained in step a) is negative for colorectal cancer Sample expression If the amount of product is similar or the same, it is diagnosed as a non-colorectal cancer patient.
優選地,所述步驟a)是檢測18個基因中任意6個基因的表達產物的量。所述6個基因為NEAT1、FAM198B、ITGAM、MYBL1、PDZK1TP1和VSIG10。 Preferably, said step a) is the detection of the amount of expression product of any of the 18 genes. The six genes are NEAT1, FAM198B, ITGAM, MYBL1, PDZK1TP1, and VSIG10.
優選地,所述步驟a)是檢測18個基因中每個基因的表達產物的量。 Preferably, said step a) is the detection of the amount of expression product of each of the 18 genes.
其中,所述步驟a)中,檢測至少一個基因的表達產物的量是將所述基因的表達產物與該表達產物的特異配偶體接觸。 Wherein in the step a), the amount of the expression product of the at least one gene is detected by contacting the expression product of the gene with the specific partner of the expression product.
其中,步驟a)中,檢測基因的表達產物的量,所述基因的核酸序列選自SEQ ID NO:1~41所示序列集合。 Wherein, in step a), the amount of the expression product of the gene is detected, and the nucleic acid sequence of the gene is selected from the sequence set shown by SEQ ID NOS: 1 to 41.
其中,步驟a)所述表達產物包括至少一個RNA轉錄物或者一個多肽。 Wherein the expression product of step a) comprises at least one RNA transcript or a polypeptide.
其中,所述表達產物包括至少一個mRNA。 Wherein the expression product comprises at least one mRNA.
其中,所述RNA轉錄物通過雜交、擴增或者測序的方法來檢測和定量。 Wherein, the RNA transcript is detected and quantified by hybridization, amplification or sequencing.
其中,所述RNA轉錄物在預設條件下與至少一個探針和/或至少一個引物接觸,在預設條件下,所述探針和/或引物可以與RNA轉錄物雜交。 Wherein the RNA transcript is contacted with at least one probe and/or at least one primer under predetermined conditions, and the probe and/or primer may hybridize to the RNA transcript under predetermined conditions.
其中,與所述RNA轉錄物的cDNA在預設條件下與至少一個探針和/或至少一個引物接觸,在預設條件下,所述探針和/或引物可以與cDNA雜交。 Wherein, the cDNA of the RNA transcript is contacted with at least one probe and/or at least one primer under predetermined conditions, and the probe and/or primer may hybridize to the cDNA under predetermined conditions.
其中,所述多肽的檢測是通過將多肽與至少一個特異配體接觸來檢測的,特別是與抗體或者親和性蛋白接觸。 Wherein the detection of the polypeptide is detected by contacting the polypeptide with at least one specific ligand, in particular with an antibody or an affinity protein.
其中,所述多肽與至少兩個特異配體接觸,特別是與兩個抗體、兩個親和性蛋白或者一個抗體和一個親和性蛋白接觸。 Wherein the polypeptide is contacted with at least two specific ligands, in particular with two antibodies, two affinity proteins or one antibody and one affinity protein.
本發明通過血液樣本體外篩查人大腸癌患病風險的試劑盒,包括18個基因中任意一個或者任意多個基因表達產物的特異配偶體,每個配偶體與每個基因特定配合,所述18個基因如下所示:DUSP2,如SEQ ID NO:1所示;NEAT1,如SEQ ID NO:2所示;MYBL1,如SEQ ID NO:3或者4所示;ITGAM,如SEQ ID NO:5或者6所示;P2RY10,如SEQ ID NO:7或者8所示;GZMB,如SEQ ID NO:9所示;SH2D2A,如SEQ ID NO:10、11、12或者13所示;PDE4D,如SEQ ID NO:14、15、16、17、18、19、20、21或者22所示;FAM198B,如SEQ ID NO:23、24或者25所示;GLT25D2,如SEQ ID NO:26所示;CD36,如SEQ ID NO:27、28、29、30或者31所示;NUDT16,如SEQ ID NO:32或者33所示;FKBP5,如SEQ ID NO:34、35或者36所示;ITPRIPL2,如SEQ ID NO:37所示;IL1B,如SEQ ID NO:38所示;DHRS13,如SEQ ID NO:39所示;PDZK1IP1,如SEQ ID NO:40所示;VSIG10,如SEQ ID NO:41所示;所述特異配偶體與基因的表達產物特異結合;所述18個基因的核酸序列選自SEQ ID NO:1~41所示序列的集合。 The invention relates to a kit for screening the risk of human colorectal cancer by blood sample in vitro, comprising a specific partner of any one of 18 genes or any plurality of gene expression products, each partner specifically cooperating with each gene, The 18 genes are as follows: DUSP2, as shown in SEQ ID NO: 1; NEAT1, as shown in SEQ ID NO: 2; MYBL1, as shown in SEQ ID NO: 3 or 4; ITGAM, SEQ ID NO: 5 Or 6; P2RY10, as shown in SEQ ID NO: 7 or 8; GZMB, as shown in SEQ ID NO: 9; SH2D2A, as shown in SEQ ID NO: 10, 11, 12 or 13; PDE4D, such as SEQ ID NO: 14, 15, 16, 17, 18, 19, 20, 21 or 22; FAM198B, as shown in SEQ ID NO: 23, 24 or 25; GLT25D2, as shown in SEQ ID NO: 26; CD36 , as shown in SEQ ID NO: 27, 28, 29, 30 or 31; NUDT16, as shown in SEQ ID NO: 32 or 33; FKBP5, as shown in SEQ ID NO: 34, 35 or 36; ITPRIPL2, such as SEQ ID NO: 37; IL1B, as set forth in SEQ ID NO: 38; DHRS13, as set forth in SEQ ID NO: 39; PDZK1IP1, as set forth in SEQ ID NO: 40; VSIG10, as set forth in SEQ ID NO: 41 The partner specifically binding to a specific gene expression product; nucleic acid sequence of the 18 genes selected from SEQ ID NO: 1 set of 41 sequences.
優選地,所述試劑盒包括18個基因中任意六個基因的表達產物的特異配偶體。所述六個基因為NEAT1、FAM198B、ITGAM、MYBL1、PDZK1TP1和VSIG10。 Preferably, the kit comprises a specific partner of an expression product of any six of the 18 genes. The six genes are NEAT1, FAM198B, ITGAM, MYBL1, PDZK1TP1, and VSIG10.
優選地,包括18個基因中每個基因的表達產物的特異配偶體。 Preferably, a specific partner comprising an expression product of each of the 18 genes is included.
其中,所述特異配偶體包括至少一個雜交探針。 Wherein the specific partner comprises at least one hybridization probe.
其中,所述特異配偶體包括至少一個雜交探針和至少一個引物。 Wherein the specific partner comprises at least one hybridization probe and at least one primer.
其中,所述特異配偶體包括至少一個雜交探針和兩個引物。 Wherein the specific partner comprises at least one hybridization probe and two primers.
其中,所述特異配偶體包括至少一個特異配體,特別是抗體或者親和蛋白。 Wherein the specific partner comprises at least one specific ligand, in particular an antibody or an affinity protein.
其中,所述特異配偶體包括至少兩個特異配體,特別是兩個抗體、兩個親和性蛋白或者一個抗體和一個親和性蛋白。 Wherein the specific partner comprises at least two specific ligands, in particular two antibodies, two affinity proteins or one antibody and one affinity protein.
本發明核酸序列如SEQ ID NO:1~41所示的18個基因的表達產物的特異配偶體在製備體外篩查大腸癌患病風險的試劑中的用途,所述特異配偶體與18個基因的表達產物特異結合。 The use of the specific partner of the expression product of the 18 genes of the nucleic acid sequences of the present invention as shown in SEQ ID NOS: 1 to 41 for the preparation of an agent for screening for the risk of colorectal cancer in vitro, the specific partner and 18 genes The expression product specifically binds.
優選地,所述特異配偶體是18個基因中任意6個基因的表達產物的特異配偶體。所述六個基因為NEAT1、FAM198B、ITGAM、MYBL1、PDZK1TP1和VSIG10。 Preferably, the specific partner is a specific partner of an expression product of any six of the 18 genes. The six genes are NEAT1, FAM198B, ITGAM, MYBL1, PDZK1TP1, and VSIG10.
優選地,所述特異配偶體是18個基因中每個基因的表達產物的特異配偶體。其中,所述特異配偶體包括至少一個雜交探針。 Preferably, the specific partner is a specific partner of an expression product of each of the 18 genes. Wherein the specific partner comprises at least one hybridization probe.
其中,所述特異配偶體包括至少一個雜交探針和至少一個引物。 Wherein the specific partner comprises at least one hybridization probe and at least one primer.
其中,所述特異配偶體包括至少一個雜交探針和兩個引物。 Wherein the specific partner comprises at least one hybridization probe and two primers.
其中,所述特異配偶體包括至少一個特異配體,特別是抗體或者親和蛋白。 Wherein the specific partner comprises at least one specific ligand, in particular an antibody or an affinity protein.
其中,所述特異配偶體包括至少兩個特異配體,特別是兩個抗體、兩個親和性蛋白或者一個抗體和一個親和性蛋白。 Wherein the specific partner comprises at least two specific ligands, in particular two antibodies, two affinity proteins or one antibody and one affinity protein.
本發明基因表達水平的檢測可以通過檢測RNA轉錄物來實現。 Detection of the level of gene expression of the invention can be achieved by detecting RNA transcripts.
術語“RNA轉錄物”是指總RNA,即編碼或者非編碼RNA,包括直接來自于外周血樣本中,也包括間接來自於細胞裂解後的血液樣本中的RNA。細胞裂解的方法可以採用申請號:WO 99/05338的專利申請公開的磁性和機械裂解方法,或者採用申請號:WO 99/53340的專利申請公開的磁裂解方法,或者採用申請號:WO 99/15321的專利申請公開的機械裂解方法,當然,也可以採用本領域公知的方法,如,熱裂解、高滲透壓裂解或者使用胍鹽等裂解液的化學裂解方法。細胞裂解後,還需要將核酸從裂解步驟產生的其他細胞組成物中分離出來,通常來講,離心即可純化核酸。總RNA包含tRNA,mRNA和rRNA,其中,mRNA包括目標基因轉錄的mRNA,也包括來自於其他非目標基因的mRNA。 The term "RNA transcript" refers to total RNA, ie, coding or non-coding RNA, including directly from a peripheral blood sample, as well as RNA indirectly from a blood sample after cell lysis. The method of cell lysis can be carried out by the magnetic and mechanical lysis method disclosed in the patent application No. WO 99/05338, or the magnetic lysis method disclosed in the patent application No. WO 99/53340, or the application number: WO 99/ The mechanical cracking method disclosed in the patent application of 15321, of course, can also be carried out by methods well known in the art, such as thermal cracking, high osmotic pressure cracking or chemical cracking using a lysate such as a cerium salt. After cell lysis, the nucleic acid needs to be separated from other cellular components produced by the lysis step. Generally, the nucleic acid can be purified by centrifugation. The total RNA comprises tRNA, mRNA and rRNA, wherein the mRNA includes mRNA transcribed from the target gene, and also mRNA derived from other non-target genes.
本發明中,RNA轉錄物可以通過雜交、擴增或者測序的方法來檢測和量化。比如,將RNA轉錄物與探針或者引物雜交。 In the present invention, RNA transcripts can be detected and quantified by hybridization, amplification or sequencing. For example, an RNA transcript is hybridized to a probe or primer.
術語“雜交是指在適當條件下,兩個核酸片段通過穩定且特異的氫鍵結合,形成雙螺旋複合物的過程。所述氫鍵存在於互補的腺嘌呤A和胸腺嘧啶T(或者尿嘧啶U)之間,簡稱A-T鍵,或者存在於互補的鳥嘌呤G和胞嘧啶C之間,簡稱G-C鍵。 The term "hybridization" refers to the process by which two nucleic acid fragments bind to a double helix complex by stable and specific hydrogen bonding under appropriate conditions. The hydrogen bond is present in complementary adenine A and thymine T (or uracil). Between U), referred to as the AT bond, or between the complementary guanine G and cytosine C, referred to as the GC bond.
兩段核酸片段的雜交可能是完全的(即形成完全互補的核苷酸片段或者序列),雜交過程中形成雙螺旋複合物僅包含A-T鍵和G-C鍵;也可能是局部的(即形成充分互補的核苷酸片段或者序列),雜交過程中形成雙螺旋複合物包含A-T鍵和G-C鍵,使得其可以形成雙螺旋結構,也包含未綁定到雙螺旋複合物上的鹼基。 Hybridization of two nucleic acid fragments may be complete (ie, form a fully complementary nucleotide fragment or sequence), and the double helix complex formed during the hybridization process only contains AT and GC bonds; it may also be local (ie, form a fully complementary The nucleotide fragment or sequence), the double helix complex formed during hybridization comprises an AT bond and a GC bond such that it can form a double helix structure and also contains bases that are not bound to the double helix complex.
兩段核酸片段的雜交程度取決於雜交的反應條件,特別是嚴格程度。所述嚴格程度是指兩個核酸片段的鹼基組成函數,也指兩個核酸片段的錯配程度。嚴格程度取決於反應條件,比如,雜交溶液中,離子的濃度和種類,變性劑的性質和濃度,和/或雜交溫度。這些條件是常規條件,本領域技術人員能確定合適的條件。通常來講,根據待雜交核酸片段的長度,雜交溫度在20~70℃之間,優選在35~65℃之間,生理鹽水的濃度在0.5~1M之間。 The degree of hybridization of the two nucleic acid fragments depends on the reaction conditions of the hybridization, particularly the degree of stringency. The degree of stringency refers to the base composition function of two nucleic acid fragments and also the degree of mismatch between the two nucleic acid fragments. The degree of stringency depends on the reaction conditions, such as the concentration and type of ions in the hybridization solution, the nature and concentration of the denaturant, and/or the hybridization temperature. These conditions are conventional conditions, and those skilled in the art can determine suitable conditions. Generally, depending on the length of the nucleic acid fragment to be hybridized, the hybridization temperature is between 20 and 70 ° C, preferably between 35 and 65 ° C, and the concentration of physiological saline is between 0.5 and 1 M.
術語“擴增引物”,是指包含5~100個核苷酸的核酸片段,優選地,包含能起始酶促反應(比如,酶促擴增反應)的15~30個核苷酸。 The term "amplification primer" refers to a nucleic acid fragment comprising 5 to 100 nucleotides, preferably 15 to 30 nucleotides which are capable of initiating an enzymatic reaction (for example, an enzymatic amplification reaction).
術語“酶促擴增反應”是指通過在至少一種酶的作用下產生核酸片段多拷貝的過程。所述擴增反應是本領域公知 常識,且在如下技術中被提及:美國專利No.4,683,195、美國專利No.4,683,202和美國專利No.4,800,159中描述的PCR(多聚酶鏈式反應),申請號為:EP 0 201 184的專利申請中公開的LCR(連接酶鏈式反應),申請號為:WO 90/01069的專利申請中公開的RCR(修復鏈式反應),申請號為:WO 90/06995的專利申請中記載的3SR(自主序列複製),申請號為:WO 91/02818的專利申請中記載的NASBA(依賴核酸序列的擴增技術),美國專利No.5,399,491中記載的TMA(轉錄介導的擴增)。 The term "enzymatic amplification reaction" refers to the process of producing multiple copies of a nucleic acid fragment by the action of at least one enzyme. The amplification reaction is well known in the art Common knowledge, and is mentioned in the following technology: PCR (polymerase chain reaction) described in U.S. Patent No. 4,683,195, U.S. Patent No. 4,683,202, and U.S. Patent No. 4,800,159, the entire disclosure of The LCR (Ligation Chain Reaction) disclosed in the patent application No. WO 90/01069, the RSR (Repair Chain Reaction), the application number is: 3SR (the patent application described in WO 90/06995) Autonomous sequence replication), NASBA (Nucleic Acid Sequence-Dependent Amplification Technique) described in the patent application of WO 91/02818, TMA (Transscription-Mediated Amplification) described in U.S. Patent No. 5,399,491.
當酶促擴增反應為PCR時,擴增一個目標基因至少需要2個目標基因特異性的引物,保證擴增產物與目標基因特異性一致。如,擴增產物可以為目標基因mRNA逆轉錄製備的互補DNA(cDNA),或者,與該cDNA互補RNA(cRNA)。當酶促擴增反應是反轉錄酶介導的PCR,即為RT-PCR。 When the enzymatic amplification reaction is PCR, at least two target gene-specific primers are required to amplify a target gene, and the amplification product is specifically aligned with the target gene. For example, the amplification product may be a complementary DNA (cDNA) prepared by reverse transcription of the target gene mRNA, or a complementary RNA (cRNA) to the cDNA. When the enzymatic amplification reaction is reverse transcriptase-mediated PCR, it is RT-PCR.
術語“雜交探針”是指包括至少5個核苷酸的核酸序列,比如,包含5~100個核苷酸,其能在指定條件下與目標基因的表達產物或者該表達產物的擴增產物雜交形成複合物。在本發明中,所述目標基因的表達產物包含目標基因mRNA,所述目標表達產物的擴增產物包括與目標產物mRNA互補DNAcDNA或者與cDNA互補的cRNA。雜交探針上還包括用於檢測的標誌物。 The term "hybridization probe" refers to a nucleic acid sequence comprising at least 5 nucleotides, for example, comprising 5 to 100 nucleotides, which are capable of expressing an expression product of a target gene or an amplification product of the expression product under specified conditions. Hybridization forms a complex. In the present invention, the expression product of the target gene comprises a target gene mRNA, and the amplification product of the target expression product includes a DNA cDNA complementary to the target product mRNA or a cDNA complementary to the cDNA. A marker for detection is also included on the hybridization probe.
術語“檢測”是指計數方式等直接檢測法和使用標誌物方式等間接檢測方法。目前,有很多用於核酸檢測的方法(比如,Kricka et al.,Clinical Chemistry,1999,no 45(4),p.453-458 or Keller G.H.et al.,DNA Probes,2nd Ed.,Stockton Press,1993,sections 5 and 6,p.173-249記載的方法)。 The term "detection" refers to an indirect detection method such as a direct detection method such as a counting method and a method using a marker. Currently, there are many methods for nucleic acid detection (eg, Kricka et al., Clinical Chemistry, 1999, no 45(4), p.453-458 or Keller G.H. et al., DNA Probes, 2nd Ed., Stockton Press, 1993, Sections 5 and 6, methods described in p. 173-249).
術語“標誌物”是指可以產生能被檢測的信號的示蹤劑。示蹤劑列表:包括產生能被偵測到的信號的酶,比如,辣根過氧化物酶,鹼性磷酸酶,β-半乳糖苷酶,葡萄糖-6-磷酸或者脫氫酶,通過比色法,螢光或發光法檢測;發色團,如螢光,發光,染料化合物;電子密度基團,通過電子顯微鏡或憑藉其導電性等電學性能、由安培法、伏安法或者阻抗測量的方法檢測;基團,通過光學方法,比如,衍射,表面等離子體共振,或接觸角變化,或原子力光譜隧道效應等物理方法檢測;放射性分子,比如32P,35S或者125I。 The term "marker" refers to a tracer that produces a signal that can be detected. Tracer list: Includes enzymes that produce signals that can be detected, such as horseradish peroxidase, alkaline phosphatase, beta-galactosidase, glucose-6-phosphate or dehydrogenase, Colorimetric, fluorescent or luminescent detection; chromophores, such as fluorescent, luminescent, dye compounds; electron density groups, by electron microscopy or by electrical conductivity, etc., by amperometric, voltammetric or impedance measurements Method detection; groups, detected by optical methods such as diffraction, surface plasmon resonance, or contact angle changes, or atomic force spectral tunneling; physical molecules such as 32 P, 35 S or 125 I.
上述雜交探針是一種檢測探針。檢測探針被標誌物標記的探針,如,Tyagi & Kramer(Nature biotech,1996,14:303-308)所述,檢測探針具體是指“分子信標”檢測探針。“分子信標”具有莖-環形結構,包括一個螢光基團和一個淬滅基團,當“分子信標”特異的環序列與其互補的目標基因的結合將會導致莖展開,並在適當的波長的激發過程中發射螢光。檢測探針具體還包括“報告探針”,如NanoStringTM’s技術所示,其包括一個“顏色編碼的條碼”。 The above hybridization probe is a detection probe. The probe is labeled with a probe labeled with a marker, as described by Tyagi & Kramer (Nature biotech, 1996, 14: 303-308), and the detection probe specifically refers to a "molecular beacon" detection probe. "Molecular beacon" has a stem-loop structure comprising a fluorescent group and a quenching group, and when the "molecular beacon" specific loop sequence is combined with its complementary target gene, the stem will unfold and be appropriate Fluorescence is emitted during the excitation of the wavelength. Specific detection probe further comprises, as shown in "reporter probe" NanoString TM 's technique, comprising a "color-coded bar code."
檢測探針包括螢光團和淬滅劑,如,6-羧基-螢光素或者6-羧基-X-羅丹明,3’末端有淬滅劑:4-二甲胺基苯基偶氮苯磺酰氯。 The detection probe comprises a fluorophore and a quencher, such as 6-carboxy-luciferin or 6-carboxy-X-rhodamine, and a quencher at the 3' end: 4-dimethylaminophenyl azobenzene Sulfonyl chloride.
為了檢測雜交反應,需要對目標序列進行標記,可以是直接標記,具體是在目標序列內部加入標誌物,也可以是間接標記,即使用檢測探針。具體是在雜交之前,實施包括 標記和/或剪切目標序列的步驟,比如,在酶促擴增反應中使用被標記了的去氧核糖核三磷酸。咪唑或者氯化錳可以達到剪切的作用。目標序列也可以在擴增步驟之後再標記,比如,通過申請號:WO 91/19812的專利申請檔中記載的三明治雜交技術雜交一個檢測探針。另外一種優選的方法是申請號:FR 2780059的專利申請檔中記載的標記核酸序列的方法。 In order to detect the hybridization reaction, the target sequence needs to be labeled, and may be a direct label, specifically, a marker is added inside the target sequence, or an indirect label is used, that is, a detection probe is used. Specifically before the hybridization, the implementation includes The step of labeling and/or cleavage of the target sequence, for example, the use of labeled deoxyribose triphosphates in an enzymatic amplification reaction. Imidazole or manganese chloride can achieve shearing action. The target sequence can also be labeled after the amplification step, for example, by hybridizing a detection probe by the sandwich hybridization technique described in the patent application no. WO 91/19812. A further preferred method is the method of labeling a nucleic acid sequence as described in the patent application of FR 2,780,059.
上述雜交探針也是一種“捕獲”探針。“捕獲”探針可以通過任何適合的方法,直接地或者間接地固定在固體基質上,比如,通過共價鍵結合或者吸附。所述固體基質,可以是合成材料,也可以是化學修飾或者非化學修飾的天然材料,具體可以是多糖,如,基於纖維素的材料、葡聚糖、共聚物和聚合物,基於纖維素的材料包含紙、纖維素衍生物,纖維素衍生物包括醋酸纖維素、硝酸纖維素;可以是苯乙烯型單、棉等天然纖維或者等合成纖維;可以是無機材料,如,二氧化矽、石英、玻璃或者陶瓷;還可以是乳膠、磁性粒子、金屬衍生工具、凝膠等。固體基質可以是微量滴定板,可以是申請號:WO-A-94/12670的專利申請檔中的固定膜,也可以是顆粒。針對每個目標基因,也可以在基質上固定不同捕獲探針,具體地,一個能夠固定大量探針的基因晶片作為基質即可以實現。“基因晶片”是指很微小但固定了許多捕獲探針的固體基質,捕獲探針固定在預定位置上。 The hybridization probe described above is also a "capture" probe. The "capture" probe can be immobilized directly or indirectly on a solid substrate by any suitable method, such as by covalent bonding or adsorption. The solid substrate may be a synthetic material, or may be a chemically modified or non-chemically modified natural material, and may specifically be a polysaccharide such as a cellulose-based material, a dextran, a copolymer, and a polymer, based on cellulose. The material comprises paper, cellulose derivative, cellulose derivative comprises cellulose acetate, cellulose nitrate; may be natural fiber such as styrene type single or cotton or synthetic fiber; may be inorganic material, such as ceria, quartz , glass or ceramic; it can also be latex, magnetic particles, metal derivatives, gels, etc. The solid substrate may be a microtiter plate, which may be a fixed film in the patent application file of WO-A-94/12670, or may be a granule. For each target gene, different capture probes can also be immobilized on the substrate. Specifically, a gene wafer capable of immobilizing a large number of probes can be realized as a substrate. "Gene wafer" refers to a solid substrate that is very small but has a number of capture probes that are fixed at a predetermined location.
基因晶片,或者說DNA晶片的概念可以追溯到20世紀90年代初。它基於多學科技術,結合了微電子技術,核酸化學,圖像分析和資訊技術。它的工作原理是分子生物的基 礎:雜交現象,即,兩個DNA或者RNA序列的互補配對。基因晶片的方法基於固定在固體基質上的捕獲探針,直接或者間接螢光素標記的目標核酸片段的樣本可以與該探針相互作用。捕獲探針特異的固定在基質或者晶片上,每個雜交均可以給出一條與目標基因相關的特定資訊。特定資訊的集合使得計量一個或者多個目標基因的表達水平成為可能。為了分析目標基因的表達水平,需要準備包含大量探針的基質,這些探針與所有或者部分轉錄為mRNA的目標基因相關。其中,“低密度基質”是指包含的探針低於50個的基質,“中等密度基質”是指包含的探針數量為50~10000的基質,“高密度基質”是指包含超過10000個探針的基質。 The concept of a genetic wafer, or DNA wafer, dates back to the early 1990s. It is based on multidisciplinary technology that combines microelectronics, nucleic acid chemistry, image analysis and information technology. Its working principle is the basis of molecular biology Basis: Hybridization, ie, complementary pairing of two DNA or RNA sequences. The method of gene chip is based on a capture probe immobilized on a solid substrate, and a sample of a target nucleic acid fragment directly or indirectly luciferin-labeled can interact with the probe. The capture probes are specifically immobilized on a substrate or wafer, and each hybridization gives a specific information related to the target gene. The collection of specific information makes it possible to measure the expression levels of one or more target genes. In order to analyze the expression level of a target gene, it is necessary to prepare a matrix containing a large number of probes which are associated with all or part of the target gene transcribed into mRNA. Among them, "low-density matrix" refers to a matrix containing less than 50 probes, "medium-density matrix" refers to a matrix containing 50 to 10,000 probes, and "high-density matrix" refers to more than 10,000 substrates. The matrix of the probe.
目標基因的cRNA或者cDNA與特定的捕獲探針雜交後,清洗晶片或者基質,被標記的cDNA或者cRNA與捕獲探針的複合物可以通過綁定了螢光標籤的高親和力配體顯示出來。並通過資訊技術作出分析螢光,得出結果。進行分子診斷時,不得不提Affymetrix公司製備的DNA晶片(("Accessing Genetic Information with High-Density DNA arrays",M.Chee et al.,Science,1996,274,610-614."Light-generated ligonucleotide arrays for rapid DNA sequence analysis",A.Caviani Pease et al.,Proc.Natl.Acad.Sci.USA,1994,91,5022-5026),在該技術中,捕獲探針往往很小,含有25個左右的核苷酸。其他一些生物晶片分別在如下文獻中公開:G.Ramsay,Nature Biotechnology,1998,No.16,p.40-44;F.Ginot,Human Mutation,1997,No.10,p.1-10;J.Cheng et al, Molecular diagnosis,1996,No.1(3),p.183-200;T.Livache et al,Nucleic Acids Research,1994,No.22(15),p.2915-2921 J.Cheng et al,Nature Biotechnology,1998,No.16,p.541-546,或者在美國專利No.4,981,783、美國專利No.5,700,637、美國專利No.5,445,934、美國專利No.5,744,305和美國專利No.5,807,522中。固體基質的主要特徵是保守捕獲探針與目標核酸片段的雜交,但產生的背景噪音卻很小。 After the cRNA or cDNA of the target gene is hybridized with a specific capture probe, the wafer or matrix is washed, and the labeled cDNA or the complex of the cRNA and the capture probe can be displayed by a high affinity ligand bound to the fluorescent tag. And through the analysis of information technology to produce fluorescence, the results. For molecular diagnostics, Affymetrix DNA wafers ("Accessing Genetic Information with High-Density DNA arrays", M. Chee et al., Science, 1996, 274, 610-614." Light-generated ligonucleotide arrays for Rapid DNA sequence analysis", A. Cavani Pease et al., Proc. Natl. Acad. Sci. USA, 1994, 91, 5022-5026), in which the capture probe is often small, containing about 25 Nucleotides. Other biochips are disclosed in G. Ramsay, Nature Biotechnology, 1998, No. 16, p. 40-44; F. Ginot, Human Mutation, 1997, No. 10, p. -10;J.Cheng et al, Molecular diagnosis, 1996, No. 1 (3), p. 183-200; T. Livache et al, Nucleic Acids Research, 1994, No. 22 (15), p. 2915-2921 J. Cheng et al, Nature Biotechnology , 1998, No. 16, p. 541-546, or in U.S. Patent No. 4,981,783, U.S. Patent No. 5,700,637, U.S. Patent No. 5,445,934, U.S. Patent No. 5,744,305, and U.S. Patent No. 5,807,522. The main feature of a solid substrate is the hybridization of a conserved capture probe to a target nucleic acid fragment, but with minimal background noise.
捕獲探針固定在基質上的方式主要有三種: There are three main ways in which the capture probe is attached to the substrate:
1、將預先合成的探針布放於玻片載體上。通過微量、縮微或噴墨裝置,這種探針可以被直接附著到晶片上。這個技術允許附著的探針具有一系列大小不等的鹼基,從幾個鹼基(5~10個),到較大尺寸的60個鹼基(印刷),再到幾百個鹼基(微印刷)。 1. Place the pre-synthesized probe on the slide carrier. Such probes can be attached directly to the wafer by means of a micro, micro or ink jet device. This technique allows attached probes to have a range of bases ranging in size from a few bases (5 to 10) to a larger size of 60 bases (printing) to hundreds of bases ( Micro-printing).
所述印刷與印表機的方式相似,是基於小球體流體以4000轉/s的速度推進。所述微印刷包括將含有幾十到幾百個鹼基的長探針附著到玻璃載片表面上。這些探針通常來自於資料庫,是擴增和純化的產物。DNA可以處在小於4cm2大小的面積範圍內,製備得到微陣列晶片,微陣列可以攜帶大約1萬個識別區域的斑點。使用直徑為0.5~1mm的尼龍膜,攜帶擴增的產物(通常是PCR擴增的),稱為巨陣列,其最大密度為25斑點/cm2。許多實驗室採用該技術。本發明中,微印刷技術是包含生物晶片的,如申請號:WO-A-00/71750或者FR 00/14896的專利申請檔所示,一定體積的樣品可以沉積在微量滴定板的底部,或者依照如申請號:FR 00/14691的專利申請檔,一定數目的其他 液滴能夠沉積在微量滴定板或者裴氏培養皿底部。 The printing is similar to that of a printer, based on the small sphere fluid propelling at 4000 rpm. The microprinting involves attaching a long probe containing tens to hundreds of bases to the surface of a glass slide. These probes are usually from a database and are the product of amplification and purification. The DNA can be in an area of less than 4 cm 2 in size to produce a microarray wafer that can carry about 10,000 spots of the identified area. A nylon membrane with a diameter of 0.5 to 1 mm is used to carry the amplified product (usually PCR amplified), referred to as a giant array, with a maximum density of 25 spots/cm 2 . Many laboratories use this technology. In the present invention, the micro-printing technique is a bio-wafer, as shown in the patent application filed in WO-A-00/71750 or FR 00/14896, a certain volume of sample can be deposited on the bottom of the microtiter plate, or According to the patent application file of the application number: FR 00/14691, a certain number of other droplets can be deposited on the bottom of the microtiter plate or the Petri dish.
2、第二種在基質和晶片上附著晶片方法是原位雜交。這種技術在晶片表面直接產生短探針。該技術基於原位寡核苷酸合成(詳見申請號:WO 89/10977和申請號:WO 90/03382的專利申請文件)和寡核苷酸合成程式。它包括一個移動的反應室,在該反應室中,寡核苷酸衍生反應可以沿著玻璃表面進行。 2. The second method of attaching wafers to substrates and wafers is in situ hybridization. This technique produces short probes directly on the surface of the wafer. This technique is based on in situ oligonucleotide synthesis (see application number: WO 89/10977 and application number WO 90/03382) and oligonucleotide synthesis procedures. It includes a moving reaction chamber in which the oligonucleotide derivatization reaction can be carried out along the surface of the glass.
3、第三種技術叫做光刻,即Affymetrix公司開發的專門用於基因晶片的程式。它也是一種原位雜交技術,來自於微處理器技術。具體地,晶片表面被附著物活化,附著物是能夠被光活化的不穩定化學基團。這些基團一旦被活化就可以與寡核苷酸序列的3’末端反應。通過在晶片表面用預定形狀掩膜掩蓋的方式可以選擇性的活化和啟動晶片區域,在該掩蓋區域,可以結合四種核苷酸一個或者其他。不同掩膜的成功使用使得保護/反應可以交替迴圈,因而可以在大小約幾十平方微米的斑點產生寡核苷酸探針。該方式可以在幾平方釐米的表面區域產生成百上千的斑點。光刻的優點:可以通過4倍N迴圈產生N-mers的晶片。 3. The third technique is called lithography, a program developed by Affymetrix for gene chips. It is also an in situ hybridization technique derived from microprocessor technology. Specifically, the surface of the wafer is activated by an adherent which is an unstable chemical group capable of being photoactivated. These groups, once activated, can react with the 3' end of the oligonucleotide sequence. The wafer region can be selectively activated and activated by masking the surface of the wafer with a predetermined shape mask in which one or the other of the four nucleotides can be combined. The successful use of different masks allows the protection/reaction to alternately loop, thus producing oligonucleotide probes at spots of a size of on the order of tens of square microns. This method can produce hundreds of spots on a surface area of a few square centimeters. Advantages of lithography: N-mers wafers can be produced by 4 times N loops.
擴增檢測目標基因的表達水平包括如下步驟:(1)提取全血的總RNA(包括tRNAs、rRNAs和mRNAs),逆轉錄得到所述mRNAs的cDNA。逆轉錄反應是通過逆轉錄酶實現的,比如,來自於禽骨髓母細胞瘤病毒AMV或者來自于莫洛尼鼠白血病病毒MMLV逆轉錄酶。若希望僅僅得到mRNAs的cDNA,應當在僅有胸腺嘧啶時逆轉錄,胸腺嘧啶與含有polyA 的mRNA序列雜交形成polyA-polyT複合物,該複合物作為逆轉錄的起始點,即可得到目標基因特定的cDNAs和非目標基因特定的cDNAs。(2)將目標基因的引物與步驟(1)得到的cDNAs混合。引物會與目標基因cDNAs雜交,特異性的擴來自于目標基因的cDNAs,非目標基因cDNAs則不會擴增,從而得到得到大量目標基因特異的cDNAs。依照本發明的目的,目標基因特異的cDNAs與源自目標基因來源的mRNAs的cDNA。本步驟可以通過通過PCR擴增更或者其他上述定義的擴增方式來實現。若用PCR進行擴增,可以使用多對引物多重PCR同時擴增多個目標基因。(3)檢測或者定量步驟(2)得到的目標基因cDNAs來測定目標基因的表達水平。可以根據獲得的特定目標基因cDNAs電泳距離,按照它們的分子量大小來檢測。電泳檢測時,遷移的凝膠和介質包括溴化乙錠,經過一段時間的遷移後,在紫外光下檢測電泳條帶,即可直接確定目標基因特異性的cDNAs的表達,目標基因特異性的cDNAs的表達量越高,電泳條帶就越亮。電泳技術是本領域的公知常識。還可以用表達量的範圍來確定,考慮到各個步驟中酶效率的多樣性,目標基因的表達可以通“管家”基因來校正,“管家”基因在正常人中也有表達。通過確定目標基因和管家基因的比值來檢測,即目標基因特異性的cDNAs的表達量與管家基因特異性的cDNAs的表達量的比值,實驗間的多樣性就可以得到校正。本領域技術人員所知曉的該技術記載在如下出版物:Bustin SA,J Mol Endocrinol,2002,29:23-39;Giulietti A Methods,2001,25:386-401。 Amplification of the expression level of the target gene includes the following steps: (1) extraction of total RNA (including tRNAs, rRNAs, and mRNAs) of whole blood, and reverse transcription to obtain cDNA of the mRNAs. The reverse transcription reaction is achieved by reverse transcriptase, for example, from avian myeloblastoma virus AMV or from Moloney murine leukemia virus MMLV reverse transcriptase. If you want to get only the cDNA of mRNAs, you should reverse-transcribe thymine, thymine and polyA. The mRNA sequence hybridizes to form a polyA-polyT complex, which serves as a starting point for reverse transcription to obtain target gene-specific cDNAs and non-target gene-specific cDNAs. (2) Mixing the primer of the target gene with the cDNAs obtained in the step (1). The primers will hybridize with the target gene cDNAs, and the cDNAs from the target gene will be specifically amplified, and the non-target cDNAs will not be amplified, thereby obtaining a large number of target gene-specific cDNAs. For the purpose of the present invention, cDNAs of target gene-specific cDNAs are derived from mRNAs derived from the gene of interest. This step can be achieved by PCR amplification or other amplification methods as defined above. If PCR is used for amplification, multiple pairs of primer multiplex PCR can be used to simultaneously amplify multiple target genes. (3) Detecting or quantifying the target gene cDNAs obtained in the step (2) to determine the expression level of the target gene. The electrophoresis distances of the specific target gene cDNAs obtained can be detected according to their molecular weights. During electrophoresis detection, the migrated gel and medium include ethidium bromide. After a period of migration, the electrophoresis bands can be detected under ultraviolet light to directly determine the expression of target gene-specific cDNAs. The higher the expression level of cDNAs, the brighter the electrophoresis band. Electrophoresis techniques are well known in the art. It can also be determined by the range of expression levels. Considering the diversity of enzyme efficiencies in each step, the expression of the target gene can be corrected by the "housekeeping" gene, and the "housekeeping" gene is also expressed in normal people. By determining the ratio of the target gene to the housekeeping gene, that is, the ratio of the expression level of the target gene-specific cDNAs to the expression level of the housekeeping gene-specific cDNAs, the diversity between experiments can be corrected. Such techniques known to those skilled in the art are described in the publications by Bustin SA, J Mol Endocrinol, 2002, 29: 23-39; Giulietti A Methods, 2001, 25: 386-401.
雜交檢測目標基因表達的步驟如下:(1)同上述方法步驟(1),提取全血的總RNA,逆轉錄得到所述mRNAs的cDNAs,該mRNAs包括目標基因的mRNAs,也包括非目標基因的mRNAs。(2)將cDNAs與固定了目標基因特異性的捕獲探針的基質混合,目標基因特異性的捕獲探針將與目標基因特異性的cDNAs發生雜交反應,而與非目標基因特異性的cDNAs不發生雜交反應。雜交反應可以在包括前述提到的所有材料的固體基質上進行。在本發明優選實施例中,基質是前述定義的低、中或者高密度基質。在雜交反應之前,可以先用前述方法對目標基因特異性的cDNAs進行擴增,以提高雜交的可能性。在雜交反應之前還可以先對目標基因特異性的cDNAs按照前述方法進行標記和/或剪切,如,在擴增反應中使用被標記的去氧核苷三磷酸。剪切可以使用咪唑和氯化錳。目標基因特異性的cDNAs也可以在擴增步驟完成後再標記,比如,通過WO-A-91/19812描述的三明治雜交技術雜交一個標記的探針。另一個優選的標記和/或剪切核酸的方法如申請號:WO 99/65926,WO 01/44507,WO 01/44506,WO 02/090584或者WO 02/090319的專利申請文件所示。(3)檢測雜交反應的結果。檢測是通過將基質與帶有標籤的檢測探針混合後,檢測標籤發出的信號實現的,所述基質上帶有目標基因特異性的捕獲探針,該探針可以與目標基因特異性的cDNAs雜交。若之前已經對目標基因特異性的cDNAs進行標記,則直接檢測即可。 The method for detecting the expression of the target gene by hybridization is as follows: (1) extracting total RNA of whole blood by step (1) of the above method, and performing reverse transcription to obtain cDNAs of the mRNAs, the mRNAs including mRNAs of the target gene, and non-target genes. mRNAs. (2) Mixing cDNAs with a substrate immobilized with a target gene-specific capture probe, the target gene-specific capture probe will hybridize with the target gene-specific cDNAs, while the non-target gene-specific cDNAs are not A hybridization reaction occurs. The hybridization reaction can be carried out on a solid substrate comprising all of the materials mentioned above. In a preferred embodiment of the invention, the substrate is a low, medium or high density substrate as defined above. Prior to the hybridization reaction, the cDNA of the target gene-specific cDNAs can be amplified by the aforementioned method to increase the possibility of hybridization. It is also possible to label and/or cleave the cDNA-specific cDNAs prior to the hybridization reaction as described above, for example, using labeled deoxynucleoside triphosphates in the amplification reaction. Imidazole and manganese chloride can be used for shearing. Target gene-specific cDNAs can also be labeled after completion of the amplification step, for example, by hybridizing a labeled probe by the sandwich hybridization technique described in WO-A-91/19812. A further preferred method of labeling and/or cleavage of nucleic acids is shown in the patent application Ser. No. WO 99/65926, WO 01/44507, WO 01/44506, WO 02/090584 or WO 02/090319. (3) The result of detecting the hybridization reaction. The detection is carried out by mixing a substrate with a labeled detection probe, and detecting a signal emitted by the label, the substrate carrying a target gene-specific capture probe, and the probe can be related to the target gene-specific cDNAs. Hybrid. If the target gene-specific cDNAs have been previously labeled, they can be directly detected.
雜交檢測目標基因表達還可以使用如下方法:(1)同上述方法步驟(1),提取全血的總RNA,逆轉錄得到該生 物材料mRNAs的cDNAs。使用T7聚合酶,在啟動子的作用下,使cDNA的互補RNA發生聚合,得到以DNA為模版的互補RNA(cRNA)。得到包含目標基因特異性cRNAs與非目標基因特異性的cRNAs的混合物。(2)將cRNAs與固定了目標基因特異性的捕獲探針的基質混合,目標基因特異性的捕獲探針將與目標基因特異性的cRNAs發生雜交反應,而與非目標基因特異性的cRNAs不發生雜交反應。通過在基質上同時固定不同的捕獲探針(一個探針與一個目標基因對應),可以同時檢測不同目標基因的表達水平。在雜交反應之前也可以先對目標基因特異性的cRNAs按照前述方法進行標記和/或剪切。(3)檢測雜交反應的結果。檢測是通過將基質與帶有標籤的檢測探針混合後,檢測標籤發出的信號實現的,所述基質上帶有目標基因特異性的捕獲探針,該探針可以與目標基因特異性的cRNAs雜交。若之前已經對目標基因特異性的cRNAs進行標記,則直接檢測即可。當基質上有大量探針時,cRNA的優勢尤其明顯。 Hybridization detection of target gene expression can also use the following methods: (1) with the above method step (1), extract total RNA from whole blood, reverse transcription to obtain the cDNAs of the material mRNAs. Using T7 polymerase, the complementary RNA of the cDNA is polymerized by the promoter to obtain a complementary RNA (cRNA) using a DNA template. A mixture comprising cRNAs specific for the target gene-specific cRNAs and non-target genes is obtained. (2) mixing cRNAs with a substrate immobilized with a target gene-specific capture probe, the target gene-specific capture probe will hybridize with the target gene-specific cRNAs, and the non-target gene-specific cRNAs are not A hybridization reaction occurs. By simultaneously immobilizing different capture probes on the substrate (one probe corresponding to one target gene), the expression levels of different target genes can be simultaneously detected. The cRNAs specific for the target gene may also be labeled and/or cleaved as described above prior to the hybridization reaction. (3) The result of detecting the hybridization reaction. Detection is achieved by mixing the matrix with a labeled detection probe that detects the signal emitted by the tag with a target gene-specific capture probe that can be associated with the target gene-specific cRNAs. Hybrid. If the target gene-specific cRNAs have been previously labeled, they can be directly detected. The advantages of cRNA are especially pronounced when there are a large number of probes on the substrate.
本發明基因表達水平的檢測可以通過檢測多肽來實現。具體是將多肽與至少一種特定配體相結合。前述試劑為檢測所述基因編碼的多肽的量的試劑。 Detection of the level of gene expression of the invention can be achieved by detecting the polypeptide. Specifically, the polypeptide is combined with at least one specific ligand. The aforementioned reagent is an agent that detects the amount of the polypeptide encoded by the gene.
優選地,所述試劑為抗體或者親和性蛋白。 Preferably, the agent is an antibody or an affinity protein.
在本發明優選實施例中,是將表達的多肽與至少兩個特定配體結合。本發明特定配體可以是抗體或者名叫“NanofitinTM”的親和蛋白。 In a preferred embodiment of the invention, the expressed polypeptide is combined with at least two specific ligands. A particular ligand of the invention may be an antibody or an affinity protein designated "NanofitinTM."
所述“抗體”包括多克隆抗體、單克隆抗體、人源化抗體和重組抗體,它們的製備方法是本領域公知常識。 The "antibody" includes polyclonal antibodies, monoclonal antibodies, humanized antibodies, and recombinant antibodies, and methods for their preparation are well known in the art.
本發明提供的試劑盒可以準確檢測待檢樣本患大腸癌的可能性,並且操作簡單,僅需血液檢查,患者依從性高,為臨床大腸癌的篩查提供了一種新的選擇,具有良好的工業應用前景。 The kit provided by the invention can accurately detect the possibility of colorectal cancer of the sample to be tested, and is simple to operate, only requires blood examination, and the patient has high compliance, which provides a new choice for screening of colorectal cancer, and has good selection. Industrial application prospects.
顯然,根據本發明的上述內容,按照本領域的普通技術知識和慣用手段,在不脫離本發明上述基本技術思想前提下,還可以做出其他多種形式的修改、替換或變更。 It is apparent that various other modifications, substitutions and changes can be made in the form of the above-described embodiments of the present invention without departing from the spirit and scope of the invention.
以下通過實施例形式的具體實施方式,對本發明的上述內容再作進一步的詳細說明。但不應將此理解為本發明上述主題的範圍僅限於以下的實例。凡基於本發明上述內容所實現的技術均屬於本發明的範圍。 The above content of the present invention will be further described in detail below by way of specific embodiments in the form of embodiments. However, the scope of the above-mentioned subject matter of the present invention should not be construed as being limited to the following examples. Any technique implemented based on the above description of the present invention is within the scope of the present invention.
圖1 6個基因同時檢測的ROC曲線。 Figure 1. ROC curves for simultaneous detection of six genes.
圖2 測試集樣本的18個基因標誌物的檢測結果。 Figure 2 Test results of 18 gene markers in the test set samples.
圖3 18個基因同時檢測的ROC曲線。 Figure 3 ROC curves of 18 genes simultaneously detected.
經過知情同意,外周血樣本來自於187例經過臨床病理診斷確診的大腸癌患者(CRC)和173例結腸鏡檢查陰性對照組患者(CNC),採集於2006~2010年間。 After informed consent, peripheral blood samples were obtained from 187 patients with colorectal cancer (CRC) diagnosed by clinical pathology and 173 patients with negative colonoscopy (CNC), collected between 2006 and 2010.
CRC招募於中國復旦大學上海癌症中心結直腸外科,均按照國際抗癌聯盟(UICC)建議的TNM分期系統進行分期。患者均未接受術前化療或者放療。患有遺傳性結直腸癌
或炎症性腸道疾病(Corhn病或潰瘍性結腸炎)的患者被排除在本發明之外。CNCs招募于上海社區醫院,通過結腸鏡檢查,沒有任何大腸癌或者息肉的症狀。檢測樣本的人口特徵和臨床特徵如表1所示:
血液樣本的收集:取每個參與者2.5ml外周血於PAXgeneTM血液RNA管(PreAnalytix GmbH,Hombrechtikon,CH),並按照製造商的指導方法進行處理。中國復旦大學上海癌症中心,鏡檢一周後,手術前,收集CRCs的血液樣本。上海社區醫院,鏡檢前一周,收集CNCs的血液樣本。 Blood samples were collected: take 2.5ml of each participant in the PAXgene TM Peripheral Blood RNA Tubes (PreAnalytix GmbH, Hombrechtikon, CH) , and processed according to the manufacturer's instruction method. At the Shanghai Cancer Center of Fudan University in China, blood samples of CRCs were collected one week after microscopy and before surgery. Shanghai Community Hospital, a week before the microscopic examination, collected blood samples from CNCs.
分組:組1:包括100名CRCs和100名CNCs;組2:包括87名CRCs和73名CNCs。 Grouping: Group 1: Includes 100 CRCs and 100 CNCs; Group 2: Includes 87 CRCs and 73 CNCs.
1、實驗方法 1. Experimental method
(1)管家基因的選擇 (1) Selection of housekeeping genes
以CSNK1G2,DECR1,FARP1表達水平的幾何平均數為“元管家基因”,作為即時定量PCR資料的校正因數。 The geometric mean of the expression levels of CSNK1G2, DECR1, and FARP1 was referred to as the "meta housekeeping gene" as a correction factor for real-time quantitative PCR data.
(2)RNA提取和即時定量PCR檢測 (2) RNA extraction and real-time quantitative PCR detection
全血抽取:取每個參與者2.5ml外周血於PAXgeneTM血液RNA管(PreAnalytix GmbH,Hombrechtikon,CH),並按說明書進行處理;總RNA提取:按照說明書,用PAXgeneTM血液RNA系統(PreAnalytix)提取總RNA;用分光光度計在OD值為260nm下檢測總RNA的量,用安捷倫生物分析儀上的RNA6000 Nano LabChip®試劑盒(Agilent Technologies,Palo Alto,CA,U.S.A.)檢測總RNA的質量,完整值在7.0以上的RNA用於分析;逆轉錄:以下面列出的目標基因的引物對為引物,使用QuantiTect®逆轉錄試劑盒(Qiagen GmbH,Hilden,Germany),按照說明書的標準流程,用320毫微克的總RNA進行逆轉錄得到cDNA;cDNA擴增:以下面列出的目標基因的引物對為引物,使用SYBR Premix DimerEraser試劑盒(Takara biotechnology,Dalian,China),按照製造者提供的標準流程,擴增cDNA;cDNA檢測:擴增過程用Biosystems 7900HT Fast Real-Time PCR系統進行即時監測(Life Technologies,Carlsbad,CA,U.S.A.),根據目標基因的表達量與管家基因表達量,計算目標 基因的相對表達量:△Ct(基因相對表達量)=Ct(目標基因)-Ct(管家基因),計算目標基因的相對表達量。表達量為負表明目標基因的Ct值低於管家基因的Ct值;相對表達量為正表明目標基因的Ct值高於管家基因的Ct值。 Whole blood were drawn: take 2.5ml of each participant in the PAXgene TM Peripheral Blood RNA Tubes (PreAnalytix GmbH, Hombrechtikon, CH) , press processing instructions; Extraction of total RNA: accordance with the instructions, with the PAXgene TM Blood RNA System (PreAnalytix) Total RNA was extracted; total RNA was measured with a spectrophotometer at an OD of 260 nm, and total RNA was detected using an RNA6000 Nano LabChip® kit (Agilent Technologies, Palo Alto, CA, USA) on an Agilent Bioanalyzer. RNA with a complete value above 7.0 was used for analysis; reverse transcription: primer pairs of the target genes listed below were used as primers, using the QuantiTect® reverse transcription kit (Qiagen GmbH, Hilden, Germany), according to the standard procedure of the instructions 320 ng of total RNA was reverse transcribed to obtain cDNA; cDNA amplification: Primer pairs of the target genes listed below were used as primers, using SYBR Premix Dimer Eraser kit (Takara biotechnology, Dalian, China) according to the manufacturer's standard Flow, Amplification of cDNA; cDNA Detection: Amplification was performed in real time using the Biosystems 7900HT Fast Real-Time PCR System (Life Technologies, Carlsbad, CA, USA), root The expression level of housekeeping gene expression of a target gene, the relative expression of a target gene is calculated: △ Ct (relative gene expression level) = Ct (target gene) - Ct (housekeeping gene), the relative expression of the gene of interest is calculated. A negative expression indicates that the Ct value of the target gene is lower than the Ct value of the housekeeping gene; positive expression indicates that the Ct value of the target gene is higher than the Ct value of the housekeeping gene.
管家基因的引物對: Primer pair of housekeeping genes:
1、CSNK1G2 1, CSNK1G2
F:5’-GCCGCAGTGATGTTCTAGC-3’ F: 5'-GCCGCAGTGATGTTCTAGC-3’
R:3’-TCTGCTGCCGTGCAAATC-5’ R: 3'-TCTGCTGCCGTGCAAATC-5’
2、DECR1: 2, DECR1:
F:5’-CGATGCTACCACCTAATAGT-3’ F: 5'-CGATGCTACCACCTAATAGT-3’
R:3’-TAGGCTGGACAGAAGAGT-5’ R: 3'-TAGGCTGGACAGAAGAGT-5’
3、FARP1: 3. FARP1:
F:5’-ACCTGTCGTTATTCCTATATCC-3’ F: 5'-ACCTGTCGTTATTCCTATATCC-3’
R:3’-GAAACCGTGTTCCCTGTG-5’ R: 3'-GAAACCGTGTTCCCTGTG-5’
目標基因的引物對: Primer pair of target gene:
1、DUSP2: 1, DUSP2:
F:5’-AACAAGCTGTGACAACCA-3’ F: 5'-AACAAGCTGTGACAACCA-3’
R:3’-CTGAGCACAAATAATTTTCCA-5’ R: 3'-CTGAGCACAAATAATTTTCCA-5’
2、NEAT1: 2, NEAT1:
F:5’-CAGAGACACAGGCATTCA-3’ F: 5'-CAGAGACACAGGCATTCA-3’
R:3’-GACTACACTCCTTGGTAACT-5'; R: 3'-GACTACACTCCTTGGTAACT-5';
3、MYBL1: 3. MYBL1:
F:5’TAATTGACACACTCTCTCCCTCTC-3’ F: 5’TAATTGACACACTCTCTCCCTCTC-3’
R:3’-TGGTGGTCGCTCTTTCCTTC-5’ R: 3'-TGGTGGTCGCTCTTTCCTTC-5’
4、ITGAM: 4. ITGAM:
F:5’ATCCAACCTACGGCAGCAG-3’ F: 5'ATCCAACCTACGGCAGCAG-3’
R:3’-TCAAGAAGGCAATGTCACTATCC-5’ R: 3'-TCAAGAAGGCAATGTCACTATCC-5’
5、P2RY10: 5, P2RY10:
F:5’-TGTCCGAATCGCACTGTAT-3’ F: 5’-TGTCCGAATCGCACTGTAT-3’
R:3’-CATTGATGAACCACTCTCCTT-5’ R: 3'-CATTGATGAACCACTCTCCTT-5’
6、GZMB 8 6, GZMB 8
F:5’-GAATCTGACTTACGCCATTATTA-3’ F: 5’-GAATCTGACTTACGCCATTATTA-3’
R:3’-GCCATTGTTTCGTCCATAG-5’ R: 3'-GCCATTGTTTCGTCCATAG-5’
7、SH2D2A 9 7, SH2D2A 9
F:5’CTAAGACAGCAAAGAAGTG-3’ F: 5'CTAAGACAGCAAAGAAGTG-3’
R:3’-AACCATTCCTCAGACAAC5’ R: 3'-AACCATTCCTCAGACAAC5’
8、PDE4D 10 8, PDE4D 10
F:5’-TAAACGCAAAGGTGGGTTGATGTC-3’ F: 5'-TAAACGCAAAGGTGGGTTGATGTC-3’
R:3’-TGATTCAAGGGCTGGGCAAG-5’ R: 3'-TGATTCAAGGGCTGGGCAAG-5’
9、FAM198B 9, FAM198B
F:5’-CGAGTGTCTCCCTCTGCTTCT-3’ F: 5'-CGAGTGTCTCCCTCTGCTTCT-3’
R:3’-CAAGTCAGTGGCTCAAAGTAGGAT-5’ R: 3'-CAAGTCAGTGGCTCAAAGTAGGAT-5’
10、GLT25D2 10, GLT25D2
F:5’-GACAGACAACCGTGACATC-3’ F: 5’-GACAGACAACCGTGACATC-3’
R:3’-CCTGAATGAACCGCAAGC-5’ R: 3'-CCTGAATGAACCGCAAGC-5’
11、CD36 11, CD36
F:5’ACTGGATTCACTTTACAATTTGC3 F: 5’ACTGGATTCACTTTACAATTTGC3
R:3’-TGCCTTCTCATCACCAATG-5’ R: 3'-TGCCTTCTCATCACCAATG-5’
12、VSIG10 12, VSIG10
F:5’TCTGACTTGAATTTGTACTCTTT3’ F: 5’TCTGACTTGAATTTGTACTCTTT3’
R:3’-GCTCTGATATGCTTAGTTTAGTT-5’ R: 3'-GCTCTGATATGCTTAGTTTAGTT-5’
13、NUDT16 13, NUDT16
F:5’ACATAGACTGGAGGAGGTAATC-3’ F: 5'ACATAGACTGGAGGAGGTAATC-3’
R:3’-GCATAGTCCGCTTTCTGTC-5’ R: 3'-GCATAGTCCGCTTTCTGTC-5’
14、PDZK1IP1 14, PDZK1IP1
F:5’-CTTCTCTGTGGCTCCAAC-3’ F: 5'-CTTCTCTGTGGCTCCAAC-3’
R:3’-CTGGCTATACTTCAAGGG-5’ R: 3'-CTGGCTATACTTCAAGGG-5’
15、FKBP5 15, FKBP5
F:5’-AGTTGTGAAAGAGTTGAAGACA-3’ F: 5'-AGTTGTGAAAGAGTTGAAGACA-3’
R:3’-TTAGGCTGAGGGAATAGAGAG-5’ R: 3'-TTAGGCTGAGGGAATAGAGAG-5’
16、ITPRIPL2 16, ITPRIPL2
F:5’-TCACCTTCTCGCTTCACA-3’ F: 5'-TCACCTTCTCGCTTCACA-3’
R:3’-GTCTCCTGTTGGATGTCTTC-5’ R: 3'-GTCTCCTGTTGGATGTCTTC-5’
17、IL1B 17, IL1B
F:5’-CCTGTCCTGCGTGTTGAAAG-3’ F: 5'-CCTGTCCTGCGTGTTGAAAG-3’
R:3’-CTGCTTGAGAGGTGCTGATG-5’ R: 3'-CTGCTTGAGAGGTGCTGATG-5’
18、DHRS13 18, DHRS13
F:5’-GCTCACCAGATTTGTCTAAGAT-3’ F: 5'-GCTCACCAGATTTGTCTAAGAT-3’
R:3’-AAACCCGTCAGTGTCCAG-5’ R: 3'-AAACCCGTCAGTGTCCAG-5’
1、單個基因表達量與大腸癌的相關性 1. Correlation between single gene expression and colorectal cancer
按照實施例2的方法分別檢測實施例1中組1的200名參與者(其中100名CRCs,100名CNCs)的血液樣本中18個基因的表達水平一相對表達量,T檢驗並計算對照組和腫瘤組的平均相對表達量,建立ROC曲線,計算ROC曲線的曲線下面積AUC,AUC可以反應基因與大腸癌的相關性。 According to the method of Example 2, the expression levels of 18 genes in the blood samples of 200 participants (100 CRCs, 100 CNCs) of Group 1 in Example 1 were respectively detected, and the T-test was used to calculate the control group. And the average relative expression of the tumor group, establish the ROC curve, calculate the area under the curve of the ROC curve AUC, AUC can reflect the correlation between the gene and colorectal cancer.
(1)DUSP2(dual specificity phosphatase 2):
DUSP2基因的表達量與大腸癌的相關性為0.75,對照組和腫瘤組的平均表達量的差異顯著,P<0.01,該基因低表達可顯著增加患大腸癌的危險性。 The correlation between the expression level of DUSP2 gene and colorectal cancer was 0.75, and the average expression level of the control group and the tumor group was significantly different, P<0.01. The low expression of this gene can significantly increase the risk of colorectal cancer.
(2)NEAT1(nuclear paraspeckle assembly transcript 1):
NEAT1基因的表達量與大腸癌的相關性為0.74,對照組和腫瘤組的平均表達量的差異顯著,P<0.01,該基因高表達可顯著增加患大腸癌的危險性。 The correlation between the expression of NEAT1 gene and colorectal cancer was 0.74, and the average expression of the control group and the tumor group was significantly different, P<0.01. The high expression of this gene can significantly increase the risk of colorectal cancer.
(3)MYBL1(v-myb myeloblastosis viral oncogene homolog(avian)-like 1):
MYBL1基因的表達量與大腸癌的相關性為0.73,對照組和腫瘤組的平均表達量的差異顯著,P<0.01,該基因低表達可顯著增加患大腸癌的危險性。 The correlation between the expression of MYBL1 gene and colorectal cancer was 0.73, and the average expression of the control group and the tumor group was significantly different, P<0.01. The low expression of this gene can significantly increase the risk of colorectal cancer.
(4)ITGAM(integrin, alpha M):
ITGAM基因的表達量與大腸癌的相關性為0.74,對照組和腫瘤組的平均表達量的差異顯著,P<0.01,該基因高表達可顯著增加患大腸癌的危險性。 The correlation between the expression of ITGAM gene and colorectal cancer was 0.74, and the average expression of the control group and the tumor group was significantly different, P<0.01. The high expression of this gene can significantly increase the risk of colorectal cancer.
(5)P2RY10(purinergic receptor P2Y,G-protein coupled,10):
P2RY10基因的表達量與大腸癌的相關性為0.73,對照組和腫瘤組的平均表達量的差異顯著,P<0.01,該基因低表達可顯著增加患大腸癌的危險性。 The correlation between the expression of P2RY10 gene and colorectal cancer was 0.73, and the average expression of the control group and the tumor group was significantly different, P<0.01. The low expression of this gene could significantly increase the risk of colorectal cancer.
(6)GZMB(granzyme B):
GZMB基因的表達量與大腸癌的相關性為0.73,對照組和腫瘤組的平均表達量的差異顯著,P<0.01,該基因低表達可顯著增加患大腸癌的危險性。 The correlation between the expression of GZMB gene and colorectal cancer was 0.73, and the average expression of the control group and the tumor group was significantly different, P<0.01. The low expression of this gene can significantly increase the risk of colorectal cancer.
(7)SH2D2A(SH2 domain containing 2A):
SH2D2A基因的表達量與大腸癌的相關性為0.72,對照組和腫瘤組的平均表達量的差異顯著,P<0.01,該基因低表達可顯著增加患大腸癌的危險性。 The correlation between the expression of SH2D2A gene and colorectal cancer was 0.72, and the average expression of the control group and the tumor group was significantly different, P<0.01. The low expression of this gene can significantly increase the risk of colorectal cancer.
(8)PDE4D(phosphodiesterase 4D,cAMP-specific):
PDE4D基因的表達量與大腸癌的相關性為0.72,對照組和腫瘤組的平均表達量的差異顯著,P<0.01,該基因低表達可顯著增加患大腸癌的危險性。 The correlation between the expression level of PDE4D gene and colorectal cancer was 0.72, and the average expression level of the control group and the tumor group was significantly different, P<0.01. The low expression of this gene can significantly increase the risk of colorectal cancer.
(9)FAM198B(family with sequence similarity 198,member B):
FAM198B基因的表達量與大腸癌的相關性為0.72,對照組和腫瘤組的平均表達量的差異顯著,P<0.01,該基因高表達可顯著增加患大腸癌的危險性。 The correlation between the expression of FAM198B gene and colorectal cancer was 0.72, and the average expression of the control group and the tumor group was significantly different, P<0.01. The high expression of this gene can significantly increase the risk of colorectal cancer.
(10)GLT25D2(glycosyltransferase 25 domain containing 2):
GLT25D2基因的表達量與大腸癌的相關性為0.70,對照組和腫瘤組的平均表達量的差異顯著,P<0.01,該基因低表達可顯著增加患大腸癌的危險性。 The correlation between the expression of GLT25D2 gene and colorectal cancer was 0.70, and the average expression of the control group and the tumor group was significantly different, P<0.01. The low expression of this gene can significantly increase the risk of colorectal cancer.
(11)CD36(CD36 molecule(thrombospondin receptor)):
CD36基因的表達量與大腸癌的相關性為0.69,對照組和腫瘤組的平均表達量的差異顯著,P<0.01,該基因高表達可顯著增加患大腸癌的危險性。 The correlation between the expression of CD36 gene and colorectal cancer was 0.69, and the average expression of the control group and the tumor group was significantly different, P<0.01. The high expression of this gene can significantly increase the risk of colorectal cancer.
(12)VSIG10(V-set and immunoglobulin domain containing 10):
VSIG10基因的表達量與大腸癌的相關性為0.70,對照組和腫瘤組的平均表達量的差異顯著,P<0.01,該基因低表達可顯著增加患大腸癌的危險性。 The correlation between the expression level of VSIG10 gene and colorectal cancer was 0.70, and the average expression level of the control group and the tumor group was significantly different, P<0.01. The low expression of this gene could significantly increase the risk of colorectal cancer.
(13)NUDT16(Nucleoside diphosphate-linked moiety X motif 16):
NUDT16基因的表達量與大腸癌的相關性為0.68,對照組和腫瘤組的平均表達量的差異顯著,P<0.01,該基因高表達可顯著增加患大腸癌的危險性。 The correlation between the expression of NUDT16 gene and colorectal cancer was 0.68, and the average expression of the control group and the tumor group was significantly different, P<0.01. The high expression of this gene can significantly increase the risk of colorectal cancer.
(14)PDZK1IP1(PDZK1 interacting protein 1):
PDZK1IP1基因的表達量與大腸癌的相關性為0.68,對照組和腫瘤組的平均表達量的差異顯著,P<0.01,該基因低表達可顯著增加患大腸癌的危險性。 The correlation between the expression of PDZK1IP1 gene and colorectal cancer was 0.68, and the average expression of the control group and the tumor group was significantly different, P<0.01. The low expression of this gene can significantly increase the risk of colorectal cancer.
(15)FKBP5(FK506 binding protein 5):
FKBP5基因的表達量與大腸癌的相關性為0.65,對照組和腫瘤組的平均表達量的差異顯著,P<0.01,該基因高表達可顯著增加患大腸癌的危險性。 The correlation between the expression of FKBP5 gene and colorectal cancer was 0.65, and the average expression of the control group and the tumor group was significantly different, P<0.01. The high expression of this gene can significantly increase the risk of colorectal cancer.
(16)ITPRIPL2(inositol 1,4,5-trisphosphate receptor interacting protein-like 2):
ITPRIPL2基因的表達量與大腸癌的相關性為0.67,對照組和腫瘤組的平均表達量的差異顯著,P<0.01,該基因高表達可 顯著增加患大腸癌的危險性。 The correlation between the expression of ITPRIPL2 gene and colorectal cancer was 0.67, and the average expression of the control group and the tumor group was significantly different, P<0.01. Significantly increase the risk of colorectal cancer.
(17)IL1B(interleukin 1,beta):
IL1B基因的表達量與大腸癌的相關性為0.67,對照組和腫瘤組的平均表達量的差異顯著,P<0.01,該基因低表達可顯著增加患大腸癌的危險性。 The correlation between the expression of IL1B gene and colorectal cancer was 0.67, and the average expression of the control group and the tumor group was significantly different, P<0.01. The low expression of this gene can significantly increase the risk of colorectal cancer.
(18)DHRS13(dehydrogenase/reductase(SDR family)member 13):
DHRS13基因的表達量與大腸癌的相關性為0.69,對照組和腫瘤組的平均表達量的差異顯著,P<0.01,該基因低表達可顯著增加患大腸癌的危險性。 The correlation between the expression of DHRS13 gene and colorectal cancer was 0.69. The average expression of DHRS13 gene was significantly different between the control group and the tumor group, P<0.01. The low expression of this gene can significantly increase the risk of colorectal cancer.
2、 6個基因表達量與大腸癌的相關性 2. Correlation between 6 gene expression levels and colorectal cancer
統計分析200例樣本中如下6個基因的表達水平:NEAT1、FAM198B、ITGAM、MYBL1、PDZK1TP1、VSIG10。將相對表達量輸入統計分析軟體中,程式運行支援向量機,建立分類模型,計算危險係數。危險係數最低為0,最高為100%。虛線表示對照組與大腸癌患者的閥值,若樣本的危險係數大於50%,其被歸類為大腸癌患者;若樣本的危險係數小於50%,其被歸類為非大腸癌患者。根據該分類模型可以計算得到每個待檢樣本患大腸癌危險係數。 The expression levels of the following 6 genes in 200 samples were statistically analyzed: NEAT1, FAM198B, ITGAM, MYBL1, PDZK1TP1, VSIG10. The relative expression is input into the statistical analysis software, and the program runs the support vector machine to establish a classification model and calculate the risk coefficient. The risk factor is a minimum of 0 and a maximum of 100%. The dotted line indicates the threshold of the control group and colorectal cancer patients. If the risk factor of the sample is greater than 50%, it is classified as a colorectal cancer patient; if the risk factor of the sample is less than 50%, it is classified as a non-colorectal cancer patient. According to the classification model, the risk factor of colorectal cancer in each sample to be tested can be calculated.
按照實施例2的方法檢測實施例1組2中160名參與 者(其中,87名CRCs,73名CNCs)的血液樣本中上述6個基因的表達水平,根據6個基因的表達水平,用前述分類模型分類,建立ROC曲線,計算曲線下面積。 Detecting 160 participants in Group 2 of Example 1 according to the method of Example 2 The expression levels of the above six genes in blood samples (87 CRCs, 73 CNCs) were classified according to the expression levels of the six genes, and the ROC curve was established to calculate the area under the curve.
6個基因檢測ROC曲線如圖1所示,曲線下面積AUC為0.86。當閾值為0.5時,該分類模型的準確度為77.5%(95%可信度為0.70-0.84),敏感度為72.4%(95%可信度為0.62-0.81),特異性為83.6%(95%可信度為0.73-0.91)。 The 6 gene detection ROC curves are shown in Figure 1, and the area under the curve AUC is 0.86. When the threshold is 0.5, the accuracy of the classification model is 77.5% (95% confidence is 0.70-0.84), sensitivity is 72.4% (95% confidence is 0.62-0.81), and specificity is 83.6% ( 95% confidence is 0.73-0.91).
表明同時檢測6個基因時,其表達量與大腸癌的相關性達0.86,且檢測的準確度、敏感度和特異性均較高。 It indicated that the expression of 6 genes was correlated with colorectal cancer by 0.86, and the accuracy, sensitivity and specificity of detection were higher.
3、 18基因表達量與大腸癌的相關性 Correlation between 3, 18 gene expression levels and colorectal cancer
統計分析上述200例樣本中18個基因的表達水平:將相對表達量輸入統計分析軟體中,程式運行支援向量機,建立分類模型,計算危險係數(如圖2所示)。危險係數最低為0,最高為100%。虛線表示對照組與大腸癌患者的閥值,若樣本的危險係數大於50%,其被歸類為大腸癌患者;若樣本的危險係數小於50%,其被歸類為非大腸癌患者。根據該分類模型可以計算得到每個待檢樣本患大腸癌危險係數。 Statistical analysis was performed on the expression levels of 18 genes in the above 200 samples: the relative expression was input into the statistical analysis software, and the program was run by the support vector machine to establish a classification model and calculate the risk factor (as shown in Figure 2). The risk factor is a minimum of 0 and a maximum of 100%. The dotted line indicates the threshold of the control group and colorectal cancer patients. If the risk factor of the sample is greater than 50%, it is classified as a colorectal cancer patient; if the risk factor of the sample is less than 50%, it is classified as a non-colorectal cancer patient. According to the classification model, the risk factor of colorectal cancer in each sample to be tested can be calculated.
按照實施例3的方法檢測實施例1組2中160名參與者(其中,87名CRCs,73名CNCs)的血液樣本中18個基因的表達水平,根據18個基因的表達水平,用前述分類模型分類,建立ROC曲線,計算曲線下面積。 The expression levels of 18 genes in blood samples of 160 participants (87 CRCs, 73 CNCs) in Group 1 of Example 1 were tested according to the method of Example 3. According to the expression levels of 18 genes, the above classification was used. Model classification, establish ROC curve, calculate the area under the curve.
ROC曲線如圖2所示,曲線下面積AUC達0.94。當閾值為0.5時,該分類模型的準確度為85.6%(95%可信度為0.79-0.90),敏感度為83.9%(95%可信度為0.74-0.90),特 異性為87.7%(95%可信度為0.77-0.94)。 The ROC curve is shown in Figure 2. The area under the curve is AUC of 0.94. When the threshold is 0.5, the accuracy of the classification model is 85.6% (95% confidence is 0.79-0.90), and the sensitivity is 83.9% (95% confidence is 0.74-0.90). The opposite sex was 87.7% (95% confidence is 0.77-0.94).
表明同時檢測18個基因時,其表達量與大腸癌的相關性達0.94,且檢測的準確度、敏感度和特異性均很高。 It indicated that when 18 genes were detected simultaneously, the correlation between the expression level and colorectal cancer was 0.94, and the accuracy, sensitivity and specificity of detection were high.
綜上,本發明18個基因均與大腸癌有較高的相關性,它們高/低表達可顯著增加患大腸癌的可能性,可以通過單獨檢測這18個基因的表達水平來篩查待檢樣本患大腸癌可能性。與檢測單個基因相比,同時檢測多個基因的表達水平可顯著提高大腸癌篩查的準確度。 In summary, the 18 genes of the present invention are highly correlated with colorectal cancer, and their high/low expression can significantly increase the possibility of colorectal cancer, and can be screened by separately detecting the expression levels of these 18 genes. The sample is likely to have colorectal cancer. Simultaneous detection of the expression levels of multiple genes can significantly improve the accuracy of colorectal cancer screening compared to the detection of a single gene.
1、試劑盒的組成 1, the composition of the kit
即時定量PCR檢測試劑盒(50人份): Real-time quantitative PCR detection kit (50 people):
(1)總RNA提取試劑 (1) Total RNA extraction reagent
PAXgeneTM血液RNA系統。 PAXgeneTM Blood RNA System.
大腸癌陰性樣品和大腸癌陽性樣品。 Colorectal cancer negative samples and colorectal cancer positive samples.
(2)逆轉錄試劑 (2) Reverse transcription reagent
逆轉錄酶(50ul);逆轉錄緩衝液(200 ul);基因組DNA去除緩衝液(100 ul);引物(50 ul);無酶水(1.9 ml);PCR反應板:含正向引物溶液和反向引物溶液的384孔板。 Reverse transcriptase (50 ul); reverse transcription buffer (200 ul); genomic DNA removal buffer (100 ul); primer (50 ul); enzyme-free water (1.9 ml); PCR reaction plate: containing forward primer solution and 384-well plate of reverse primer solution.
管家基因的引物對: Primer pair of housekeeping genes:
1、CSNK1G2 1, CSNK1G2
F:5’-GCCGCAGTGATGTTCTAGC-3’ F: 5'-GCCGCAGTGATGTTCTAGC-3’
R:3’-TCTGCTGCCGTGCAAATC-5’ R: 3'-TCTGCTGCCGTGCAAATC-5’
2、DECR1: 2, DECR1:
F:5’-CGATGCTACCACCTAATAGT-3’ F: 5'-CGATGCTACCACCTAATAGT-3’
R:3’-TAGGCTGGACAGAAGAGT-5’ R: 3'-TAGGCTGGACAGAAGAGT-5’
3、FARP1: 3. FARP1:
F:5’-ACCTGTCGTTATTCCTATATCC-3’ F: 5'-ACCTGTCGTTATTCCTATATCC-3’
R:3’-GAAACCGTGTTCCCTGTG-5’ R: 3'-GAAACCGTGTTCCCTGTG-5’
目標基因的引物對: Primer pair of target gene:
1、DUSP2: 1, DUSP2:
F:5’-AACAAGCTGTGACAACCA-3’ F: 5'-AACAAGCTGTGACAACCA-3’
R:3’CTGAGCACAAATAATTTTCCA-5’ R: 3'CTGAGCACAAATAATTTTCCA-5’
和/或 and / or
2、NEAT1: 2, NEAT1:
F:5’-CAGAGACACAGGCATTCA-3’ F: 5'-CAGAGACACAGGCATTCA-3’
R:3’-GACTACACTCCTTGGTAACT-5'; R: 3'-GACTACACTCCTTGGTAACT-5';
和/或 and / or
3、MYBL1: 3. MYBL1:
F:5’TAATTGACACACTCTCTCCCTCTC-3’ F: 5’TAATTGACACACTCTCTCCCTCTC-3’
R:3’-TGGTGGTCGCTCTTTCCTTC-5’ R: 3'-TGGTGGTCGCTCTTTCCTTC-5’
和/或 and / or
4、ITGAM: 4. ITGAM:
F:5’ATCCAACCTACGGCAGCAG-3’ F: 5'ATCCAACCTACGGCAGCAG-3’
R:3’-TCAAGAAGGCAATGTCACTATCC-5’ R: 3'-TCAAGAAGGCAATGTCACTATCC-5’
和/或 and / or
5、P2RY10: 5, P2RY10:
F:5’-TGTCCGAATCGCACTGTAT-3’ F: 5’-TGTCCGAATCGCACTGTAT-3’
R:3’-CATTGATGAACCACTCTCCTT-5’ R: 3'-CATTGATGAACCACTCTCCTT-5’
和/或 and / or
6、GZMB 8 6, GZMB 8
F:5’-GAATCTGACTTACGCCATTATTA-3’ F: 5’-GAATCTGACTTACGCCATTATTA-3’
R:3’-GCCATTGTTTCGTCCATAG-5’ R: 3'-GCCATTGTTTCGTCCATAG-5’
和/或 and / or
7、SH2D2A 9 7, SH2D2A 9
F:5’CTAAGACAGCAAAGAAGTG-3’ F: 5'CTAAGACAGCAAAGAAGTG-3’
R:3’-AACCATTCCTCAGACAAC-5’ R: 3'-AACCATTCCTCAGACAAC-5’
和/或 and / or
8、PDE4D 10 8, PDE4D 10
F:5’-TAAACGCAAAGGTGGGTTGATGTC-3’ F: 5'-TAAACGCAAAGGTGGGTTGATGTC-3’
R:3’-TGATTCAAGGGCTGGGCAAG-5’ R: 3'-TGATTCAAGGGCTGGGCAAG-5’
和/或 and / or
9、FAM198B 9, FAM198B
F:5’-CGAGTGTCTCCCTCTGCTTCT-3’ F: 5'-CGAGTGTCTCCCTCTGCTTCT-3’
R:3’-CAAGTCAGTGGCTCAAAGTAGGAT-5’ R: 3'-CAAGTCAGTGGCTCAAAGTAGGAT-5’
和/或 and / or
10、GLT25D2 10, GLT25D2
F:5’-GACAGACAACCGTGACATC-3’ F: 5’-GACAGACAACCGTGACATC-3’
R:3’-CCTGAATGAACCGCAAGC-5’ R: 3'-CCTGAATGAACCGCAAGC-5’
和/或 and / or
11、CD36 11, CD36
F:5’ACTGGATTCACTTTACAATTTGC3 F: 5’ACTGGATTCACTTTACAATTTGC3
R:3’-TGCCTTCTCATCACCAATG-5’ R: 3'-TGCCTTCTCATCACCAATG-5’
和/或 and / or
12、VSIG10 12, VSIG10
F:5’TCTGACTTGAATTTGTACTCTTT3’ F: 5’TCTGACTTGAATTTGTACTCTTT3’
R:3’-GCTCTGATATGCTTAGTTTAGTT-5’ R: 3'-GCTCTGATATGCTTAGTTTAGTT-5’
和/或 and / or
13、NUDT16 13, NUDT16
F:5’ACATAGACTGGAGGAGGTAATC-3’ F: 5'ACATAGACTGGAGGAGGTAATC-3’
R:3’-GCATAGTCCGCTTTCTGTC-5’ R: 3'-GCATAGTCCGCTTTCTGTC-5’
和/或 and / or
14、PDZK1IP1 14, PDZK1IP1
F:5’-CTTCTCTGTGGCTCCAAC-3’ F: 5'-CTTCTCTGTGGCTCCAAC-3’
R:3’-CTGGCTATACTTCAAGGG-5’ R: 3'-CTGGCTATACTTCAAGGG-5’
和/或 and / or
15、FKBP5 15, FKBP5
F:5’-AGTTGTGAAAGAGTTGAAGACA-3’ F: 5'-AGTTGTGAAAGAGTTGAAGACA-3’
R:3’-TTAGGCTGAGGGAATAGAGAG-5’ R: 3'-TTAGGCTGAGGGAATAGAGAG-5’
和/或 and / or
16、ITPRIPL2 16, ITPRIPL2
F:5’-TCACCTTCTCGCTTCACA-3’ F: 5'-TCACCTTCTCGCTTCACA-3’
R:3’-GTCTCCTGTTGGATGTCTTC-5’ R: 3'-GTCTCCTGTTGGATGTCTTC-5’
和/或 and / or
17、IL1B 17, IL1B
F:5’-CCTGTCCTGCGTGTTGAAAG-3’ F: 5'-CCTGTCCTGCGTGTTGAAAG-3’
R:3’-CTGCTTGAGAGGTGCTGATG-5’ R: 3'-CTGCTTGAGAGGTGCTGATG-5’
和/或 and / or
18、DHRS13 18, DHRS13
F:5’-GCTCACCAGATTTGTCTAAGAT-3’ F: 5'-GCTCACCAGATTTGTCTAAGAT-3’
R:3’-AAACCCGTCAGTGTCCAG-5’ R: 3'-AAACCCGTCAGTGTCCAG-5’
(3)cDNA擴增試劑 (3) cDNA amplification reagent
含有反應酶和螢光染料的混合緩衝液(20ml);ROX參考染料(800ul)PCR反應板:PCR反應板:同逆轉錄試劑中PCR反應板。 Mixing buffer containing reaction enzyme and fluorescent dye (20 ml); ROX reference dye (800 ul) PCR reaction plate: PCR reaction plate: PCR reaction plate in the same reverse transcription reagent.
2、試劑盒的使用方法 2. How to use the kit
(1)待檢參與者2.5ml外周血採集於PAXgeneTM血液RNA管(PreAnalytix GmbH,Hombrechtikon,CH),並按照製造商的指導方法進行處理;按照製造者提供的說明書,用PAXgeneTM血液RNA系統(PreAnalytix)提取待檢樣本、大腸癌陰性樣品和大腸癌陽性樣品的總RNA。 (1) 2.5 ml peripheral blood of the participants to be tested was collected from a PAXgeneTM blood RNA tube (PreAnalytix GmbH, Hombrechtikon, CH) and processed according to the manufacturer's instructions; according to the manufacturer's instructions, the PAXgeneTM blood RNA system (PreAnalytix) The total RNA of the sample to be tested, the colorectal cancer negative sample, and the colorectal cancer positive sample is extracted.
(2)逆轉錄 (2) Reverse transcription
以步驟(1)的總RNA為範本,用上述逆轉錄試劑,得到18個目標基因和管家基因的cDNA。 Using the total RNA of the step (1) as a template, the above target reverse transcription reagent was used to obtain cDNAs of 18 target genes and housekeeping genes.
(3)cDNA擴增 (3) cDNA amplification
取步驟(2)得到的cDNA為範本,用上述cDNA擴增試劑擴增,使用Biosystems 7900HT Fast Real-Time PCR系統檢測cDNA的量。 The cDNA obtained in the step (2) was taken as a template, amplified with the above cDNA amplification reagent, and the amount of cDNA was detected using a Biosystems 7900HT Fast Real-Time PCR system.
(4)比較待檢樣本與大腸癌陰性樣品、大腸癌陽性樣品18個基因的表達水平,判斷待檢樣本患大腸癌的風險。 (4) Compare the expression levels of 18 genes of the samples to be tested, colorectal cancer negative samples and colorectal cancer positive samples, and judge the risk of colorectal cancer in the samples to be tested.
備註:本發明試劑盒中,目標基因引物對的數目可以根據需要任意選擇一對或者多對。 Remark: In the kit of the present invention, the number of target gene primer pairs can be arbitrarily selected one or more pairs as needed.
綜上,本發明DUSP2等18個基因與大腸癌密切相關,這些基因的高/低表達會顯著提高大腸癌的危險性,可通過單獨或者同時檢測這18個基因的表達水平測定待檢樣本患大腸癌的可能性。本發明試劑盒準確度、敏感度和特異性均較高,具有良好的應用前景。 In summary, the 18 genes such as DUSP2 of the present invention are closely related to colorectal cancer, and the high/low expression of these genes can significantly increase the risk of colorectal cancer, and the samples to be tested can be determined by detecting the expression levels of these 18 genes individually or simultaneously. The possibility of colorectal cancer. The kit of the invention has high accuracy, sensitivity and specificity, and has good application prospects.
1. Stamova BS, Apperson M, Walker WL, Tian Y, Xu H, et al. (2009),Identification and validation of suitable endogenous reference genes for gene expression studies in human peripheral blood. BMC Med Genomics 2:49. 1. Stamova BS, Apperson M, Walker WL, Tian Y, Xu H, et al. (2009), Identification and validation of suitable endogenous reference genes for gene expression studies in human peripheral blood. BMC Med Genomics 2:49.
2. Vandesompele J, De Preter K, Pattyn F, Poppe B, Van Roy N, et al. (2002) Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol 3: H34. 2. Vandesompele J, De Preter K, Pattyn F, Poppe B, Van Roy N, et al. (2002) Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol 3: H34 .
3. Livak KJ, Schmittgen TD (2001) Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) ethod. Methods 25: 402-408. 3. Livak KJ, Schmittgen TD (2001) Analysis of relative gene expression Data using real-time quantitative PCR and the 2(-Delta Delta C(T)) ethod. Methods 25: 402-408.
4. Peng H, Long F, Ding C (2005) Feature selection based on mutual information: criteria of max-dependency, max-relevance, and min-redundancy. IEEE Trans Pattern Anal Mach Intell 27: 1226-1238. 4. Peng H, Long F, Ding C (2005) Feature selection based on mutual Information: criteria of max-dependency, max-relevance, and min-redundancy. IEEE Trans Pattern Anal Mach Intell 27: 1226-1238.
5. Guyon I, Weston J, Barnhill S, Vapnik V (2002) Gene selection for cancer classification using support vector machines. Machine learning 46: 389-422. 5. Guyon I, Weston J, Barnhill S, Vapnik V (2002) Gene selection for cancer classification using support vector machines. Machine learning 46: 389-422.
<110> 生物梅里埃股份有限公司 <110> BioMerieux AG
<120> 一種大腸癌篩查試劑盒 <120> A colorectal cancer screening kit
<130> GY224-12P1207 <130> GY224-12P1207
<160> 83 <160> 83
<170> PatentIn version 3.5 <170> PatentIn version 3.5
<210> 1 <210> 1
<211> 1708 <211> 1708
<212> DNA <212> DNA
<213> DUSP2基因的核苷酸序列 <213> Nucleotide sequence of DUSP2 gene
<400> 1 <400> 1
<210> 2 <210> 2
<211> 22743 <211> 22743
<212> DNA <212> DNA
<213> NEAT1基因的核苷酸序列 <213> Nucleotide sequence of the NEAT1 gene
<400> 2 <400> 2
<210> 3 <210> 3
<211> 5188 <211> 5188
<212> DNA <212> DNA
<213> MYBL1基因的核苷酸序列一 <213> Nucleotide sequence of MYBL1 gene
<400> 3 <400> 3
<210> 4 <210> 4
<211> 5008 <211> 5008
<212> DNA <212> DNA
<213> MYBL1基因的核苷酸序列二 <213> Nucleotide sequence II of MYBL1 gene
<400> 4 <400> 4
<210> 5 <210> 5
<211> 4745 <211> 4745
<212> DNA <212> DNA
<213> ITGAM基因的核苷酸序列一 <213> The nucleotide sequence of the ITGAM gene
<400> 5 <400> 5
<210> 6 <210> 6
<211> 4742 <211> 4742
<212> DNA <212> DNA
<213> ITGAM基因的核苷酸序列二 <213> The nucleotide sequence of the ITGAM gene
<400> 6 <400> 6
<210> 7 <210> 7
<211> 1871 <211> 1871
<212> DNA <212> DNA
<213> P2RY10基因的核苷酸序列一 <213> Nucleotide sequence of P2RY10 gene
<400> 7 <400> 7
<210> 8 <210> 8
<211> 1679 <211> 1679
<212> DNA <212> DNA
<213> P2RY10基因的核苷酸序列二 <213> Nucleotide sequence 2 of P2RY10 gene
<400> 8 <400> 8
<210> 9 <210> 9
<211> 941 <211> 941
<212> DNA <212> DNA
<213> GZMB基因的核苷酸序列 <213> Nucleotide sequence of GZMB gene
<400> 9 <400> 9
<210> 10 <210> 10
<211> 1691 <211> 1691
<212> DNA <212> DNA
<213> SH2D2A基因的核苷酸序列一 <213> Nucleotide sequence of SH2D2A gene
<400> 10 <400> 10
<210> 11 <210> 11
<211> 1661 <211> 1661
<212> DNA <212> DNA
<213> SH2D2A基因的核苷酸序列二 <213> Nucleotide sequence II of SH2D2A gene
<400> 11 <400> 11
<210> 12 <210> 12
<211> 1630 <211> 1630
<212> DNA <212> DNA
<213> SH2D2A基因的核苷酸序列三 <213> Nucleotide sequence of SH2D2A gene
<400> 12 <400> 12
<210> 13 <210> 13
<211> 1540 <211> 1540
<212> DNA <212> DNA
<213> SH2D2A基因的核苷酸序列四 <213> Nucleotide sequence of SH2D2A gene
<400> 13 <400> 13
<210> 14 <210> 14
<211> 8240 <211> 8240
<212> DNA <212> DNA
<213> PDE4D基因的核苷酸序列一 <213> Nucleotide sequence of PDE4D gene
<400> 14 <400> 14
<210> 15 <210> 15
<211> 7783 <211> 7783
<212> DNA <212> DNA
<213> PDE4D基因的核苷酸序列二 <213> Nucleotide sequence 2 of PDE4D gene
<400> 15 <400> 15
<210> 16 <210> 16
<211> 8130 <211> 8130
<212> DNA <212> DNA
<213> PDE4D基因的核苷酸序列三 <213> Nucleotide sequence 3 of PDE4D gene
<400> 16 <400> 16
<210> 17 <210> 17
<211> 7979 <211> 7979
<212> DNA <212> DNA
<213> PDE4D基因的核苷酸序列四 <213> The nucleotide sequence of the PDE4D gene
<400> 17 <400> 17
<210> 18 <210> 18
<211> 7757 <211> 7757
<212> DNA <212> DNA
<213> PDE4D基因的核苷酸序列五 <213> Nucleotide sequence of PDE4D gene
<400> 18 <400> 18
<210> 19 <210> 19
<211> 8395 <211> 8395
<212> DNA <212> DNA
<213> PDE4D基因的核苷酸序列六 <213> The nucleotide sequence of the PDE4D gene
<400> 19 <400> 19
<210> 20 <210> 20
<211> 7715 <211> 7715
<212> DNA <212> DNA
<213> PDE4D基因的核苷酸序列七 <213> Nucleotide sequence of the PDE4D gene
<400> 20 <400> 20
<210> 21 <210> 21
<211> 7801 <211> 7801
<212> DNA <212> DNA
<213> PDE4D基因的核苷酸序列八 <213> Nucleotide sequence of PDE4D gene
<400> 21 <400> 21
<210> 22 <210> 22
<211> 7591 <211> 7591
<212> DNA <212> DNA
<213> PDE4D基因的核苷酸序列九 <213> Nine nucleotide sequence of PDE4D gene
<400> 22 <400> 22
<210> 23 <210> 23
<211> 4833 <211> 4833
<212> DNA <212> DNA
<213> FAM198B基因的核苷酸序列一 <213> Nucleotide sequence of FAM198B gene
<400> 23 <400> 23
<210> 24 <210> 24
<211> 4854 <211> 4854
<212> DNA <212> DNA
<213> FAM198B基因的核苷酸序列二 <213> Nucleotide sequence II of FAM198B gene
<400> 24 <400> 24
<210> 25 <210> 25
<211> 4809 <211> 4809
<212> DNA <212> DNA
<213> FAM198B基因的核苷酸序列三 <213> Nucleotide sequence of FAM198B gene
<400> 25 <400> 25
<210> 26 <210> 26
<211> 5182 <211> 5182
<212> DNA <212> DNA
<213> GLT25D2基因的核苷酸序列 <213> Nucleotide sequence of GLT25D2 gene
<400> 26 <400> 26
<210> 27 <210> 27
<211> 4727 <211> 4727
<212> DNA <212> DNA
<213> CD36基因的核苷酸序列一 <213> Nucleotide sequence of CD36 gene
<400> 27 <400> 27
<210> 28 <210> 28
<211> 2069 <211> 2069
<212> DNA <212> DNA
<213> CD36基因的核苷酸序列二 <213> Nucleotide sequence II of CD36 gene
<400> 28 <400> 28
<210> 29 <210> 29
<211> 2108 <211> 2108
<212> DNA <212> DNA
<213> CD36基因的核苷酸序列三 <213> Nucleotide sequence III of CD36 gene
<400> 29 <400> 29
<210> 30 <210> 30
<211> 1814 <211> 1814
<212> DNA <212> DNA
<213> CD36基因的核苷酸序列四 <213> Nucleotide sequence of CD36 gene
<400> 30 <400> 30
<210> 31 <210> 31
<211> 1989 <211> 1989
<212> DNA <212> DNA
<213> CD36基因的核苷酸序列五 <213> Nucleotide sequence of CD36 gene
<400> 31 <400> 31
<210> 32 <210> 32
<211> 6117 <211> 6117
<212> DNA <212> DNA
<213> NUDT16基因的核苷酸序列一 <213> Nucleotide sequence of NUDT16 gene
<400> 32 <400> 32
<210> 33 <210> 33
<211> 5943 <211> 5943
<212> DNA <212> DNA
<213> NUDT16基因的核苷酸序列三 <213> Nucleotide sequence III of NUDT16 gene
<400> 33 <400> 33
<210> 34 <210> 34
<211> 3793 <211> 3793
<212> DNA <212> DNA
<213> FKBP5基因的核苷酸序列一 <213> Nucleotide sequence of FKBP5 gene
<400> 34 <400> 34
<210> 35 <210> 35
<211> 3951 <211> 3951
<212> DNA <212> DNA
<213> FKBP5基因的核苷酸序列二 <213> Nucleotide sequence of FKBP5 gene
<400> 35 <400> 35
<210> 36 <210> 36
<211> 3838 <211> 3838
<212> DNA <212> DNA
<213> FKBP5基因的核苷酸序列三 <213> Nucleotide sequence of FKBP5 gene
<400> 36 <400> 36
<210> 37 <210> 37
<211> 7722 <211> 7722
<212> DNA <212> DNA
<213> ITPRIPL2基因的核苷酸序列 <213> Nucleotide sequence of ITPRIPL2 gene
<400> 37 <400> 37
<210> 38 <210> 38
<211> 1498 <211> 1498
<212> DNA <212> DNA
<213> IL1B基因的核苷酸序列 <213> Nucleotide sequence of IL1B gene
<400> 38 <400> 38
<210> 39 <210> 39
<211> 1939 <211> 1939
<212> DNA <212> DNA
<213> DHRS13基因的核苷酸序列 <213> Nucleotide sequence of DHRS13 gene
<400> 39 <400> 39
<210> 40 <210> 40
<211> 894 <211> 894
<212> DNA <212> DNA
<213> PDZK1IP1基因的核苷酸序列 <213> Nucleotide sequence of PDZK1IP1 gene
<400> 40 <400> 40
<210> 41 <210> 41
<211> 5003 <211> 5003
<212> DNA <212> DNA
<213> VSIG10基因的核苷酸序列 <213> Nucleotide sequence of VSIG10 gene
<400> 41 <400> 41
<210> 42 <210> 42
<211> 18 <211> 18
<212> DNA <212> DNA
<213> DUSP2基因轉錄的mRNA的逆轉錄正向擴增引物 <213> Reverse transcription of the DUSP2 gene transcribed mRNA forward amplification primer
<400> 42 <400> 42
<210> 43 <210> 43
<211> 21 <211> 21
<212> DNA <212> DNA
<213> DUSP2基因轉錄的mRNA的逆轉錄反向擴增引物 <213> Reverse Transcription Reverse Amplification Primer of DUSP2 Gene Transcribed mRNA
<400> 43 <400> 43
<210> 44 <210> 44
<211> 18 <211> 18
<212> DNA <212> DNA
<213> NEAT1基因轉錄的mRNA的逆轉錄正向擴增引物 <213> Reverse transcription forward amplification primers for mRNA transcribed from the NEAT1 gene
<400> 44 <400> 44
<210> 45 <210> 45
<211> 20 <211> 20
<212> DNA <212> DNA
<213> NEAT1基因轉錄的mRNA的逆轉錄反向擴增引物 <213> Reverse transcription reverse amplification primers for mRNA transcribed from the NEAT1 gene
<400> 45 <400> 45
<210> 46 <210> 46
<211> 24 <211> 24
<212> DNA <212> DNA
<213> MYBL1基因轉錄的mRNA的逆轉錄正向擴增引物 <213> Reverse transcription forward amplification primers for MYBL1 gene transcribed mRNA
<400> 46 <400> 46
<210> 47 <210> 47
<211> 20 <211> 20
<212> DNA <212> DNA
<213> MYBL1基因轉錄的mRNA的逆轉錄反向擴增引物 <213> Reverse Transcription Reverse Amplification Primers for mRNA Transcribed by MYBL1 Gene
<400> 47 <400> 47
<210> 48 <210> 48
<211> 19 <211> 19
<212> DNA <212> DNA
<213> ITGAM基因轉錄的mRNA的逆轉錄正向擴增引物 <213> Reverse transcription forward amplification primers for mRNA transcribed from ITGAM gene
<400> 48 <400> 48
<210> 49 <210> 49
<211> 23 <211> 23
<212> DNA <212> DNA
<213> ITGAM基因轉錄的mRNA的逆轉錄反向擴增引物 <213> Reverse transcription reverse amplification primers for mRNA transcribed from ITGAM gene
<400> 49 <400> 49
<210> 50 <210> 50
<211> 19 <211> 19
<212> DNA <212> DNA
<213> P2RY10基因轉錄的mRNA的逆轉錄正向擴增引物 <213> Reverse transcription forward amplification primers for mRNA transcribed from the P2RY10 gene
<400> 50 <400> 50
<210> 51 <210> 51
<211> 21 <211> 21
<212> DNA <212> DNA
<213> P2RY10基因轉錄的mRNA的逆轉錄反向擴增引物 <213> Reverse Transcription Reverse Amplification Primers for P2RY10 Gene Transcribed mRNA
<400> 51 <400> 51
<210> 52 <210> 52
<211> 23 <211> 23
<212> DNA <212> DNA
<213> GZMB基因轉錄的mRNA的逆轉錄正向擴增引物 <213> Reverse transcription forward amplification primers for mRNA transcribed from GZMB gene
<400> 52 <400> 52
<210> 53 <210> 53
<211> 19 <211> 19
<212> DNA <212> DNA
<213> GZMB基因轉錄的mRNA的逆轉錄反向擴增引物 <213> Reverse transcription reverse amplification primers for mRNA transcribed from GZMB gene
<400> 53 <400> 53
<210> 54 <210> 54
<211> 19 <211> 19
<212> DNA <212> DNA
<213> SH2D2A基因轉錄的mRNA的逆轉錄正向擴增引物 <213> Reverse Transcription Forward Amplification Primer of SH2D2A Gene Transcribed mRNA
<400> 54 <400> 54
<210> 55 <210> 55
<211> 18 <211> 18
<212> DNA <212> DNA
<213> SH2D2A基因轉錄的mRNA的逆轉錄反向擴增引物 <213> Reverse Transcription Reverse Amplification Primer of SH2D2A Gene Transcribed mRNA
<400> 55 <400> 55
<210> 56 <210> 56
<211> 24 <211> 24
<212> DNA <212> DNA
<213> PDE4D基因轉錄的mRNA的逆轉錄正向擴增引物 <213> Reverse Transcription Forward Amplification Primers for PDE4D Gene Transcribed mRNA
<400> 56 <400> 56
<210> 57 <210> 57
<211> 20 <211> 20
<212> DNA <212> DNA
<213> PDE4D基因轉錄的mRNA的逆轉錄反向擴增引物 <213> Reverse Transcription Reverse Amplification Primers for PDE4D Gene Transcribed mRNA
<400> 57 <400> 57
<210> 58 <210> 58
<211> 21 <211> 21
<212> DNA <212> DNA
<213> FAM198B基因轉錄的mRNA的逆轉錄正向擴增引物 <213> Reverse transcription forward amplification primers for mRNA transcribed from FAM198B gene
<400> 58 <400> 58
<210> 59 <210> 59
<211> 24 <211> 24
<212> DNA <212> DNA
<213> FAM198B基因轉錄的mRNA的逆轉錄反向擴增引物 <213> Reverse transcription reverse amplification primers for mRNA transcribed from the FAM198B gene
<400> 59 <400> 59
<210> 60 <210> 60
<211> 19 <211> 19
<212> DNA <212> DNA
<213> GLT25D2基因轉錄的mRNA的逆轉錄正向擴增引物 <213> Reverse transcription forward amplification primers for mRNA transcribed from the GLT25D2 gene
<400> 60 <400> 60
<210> 61 <210> 61
<211> 18 <211> 18
<212> DNA <212> DNA
<213> GLT25D2基因轉錄的mRNA的逆轉錄反向擴增引物 <213> Reverse transcription amplification primers for mRNA transcribed from the GLT25D2 gene
<400> 61 <400> 61
<210> 62 <210> 62
<211> 23 <211> 23
<212> DNA <212> DNA
<213> CD36價基因轉錄的mRNA的逆轉錄正向擴增引物 <213> Reverse transcription forward amplification primers for mRNA transcribed from CD36 valency gene
<400> 62 <400> 62
<210> 63 <210> 63
<211> 19 <211> 19
<212> DNA <212> DNA
<213> CD36基因轉錄的mRNA的逆轉錄反向擴增引物 <213> Reverse Transcription Reverse Amplification Primers for mRNA Transcribed by CD36 Gene
<400> 63 <400> 63
<210> 64 <210> 64
<211> 22 <211> 22
<212> DNA <212> DNA
<213> NUDT16基因轉錄的mRNA的逆轉錄正向擴增引物 <213> Reverse transcription forward amplification primers for NUDT16 gene transcribed mRNA
<400> 64 <400> 64
<210> 65 <210> 65
<211> 19 <211> 19
<212> DNA <212> DNA
<213> NUDT16基因轉錄的mRNA的逆轉錄反向擴增引物 <213> Reverse transcription reverse amplification primers for NUDT16 gene transcribed mRNA
<400> 65 <400> 65
<210> 66 <210> 66
<211> 22 <211> 22
<212> DNA <212> DNA
<213> FKBP5基因轉錄的mRNA的逆轉錄正向擴增引物 <213> Reverse transcription of the FKBP5 gene transcribed mRNA forward amplification primer
<400> 66 <400> 66
<210> 67 <210> 67
<211> 21 <211> 21
<212> DNA <212> DNA
<213> FKBP5基因轉錄的mRNA的逆轉錄反向擴增引物 <213> Reverse transcription reverse amplification primers for mRNA transcribed from the FKBP5 gene
<400> 67 <400> 67
<210> 68 <210> 68
<211> 18 <211> 18
<212> DNA <212> DNA
<213> ITPRIPL2基因轉錄的mRNA的逆轉錄正向擴增引物 <213> Reverse transcription forward amplification primers for mRNA transcribed from ITPRIPL2 gene
<400> 68 <400> 68
<210> 69 <210> 69
<211> 20 <211> 20
<212> DNA <212> DNA
<213> ITPRIPL2基因轉錄的mRNA的逆轉錄反向擴增引物 <213> Reverse transcription reverse amplification primers for mRNA transcribed from ITPRIPL2 gene
<400> 69 <400> 69
<210> 70 <210> 70
<211> 20 <211> 20
<212> DNA <212> DNA
<213> IIL1B基因轉錄的mRNA的逆轉錄正向擴增引物 <213> Reverse transcription forward amplification primers for mRNA transcribed from the IIL1B gene
<400> 70 <400> 70
<210> 71 <210> 71
<211> 20 <211> 20
<212> DNA <212> DNA
<213> IL1B基因轉錄的mRNA的逆轉錄反向擴增引物 <213> Reverse Transcription Reverse Amplification Primers for mRNA Transcribed by IL1B Gene
<400> 71 <400> 71
<210> 72 <210> 72
<211> 22 <211> 22
<212> DNA <212> DNA
<213> DHRS13基因轉錄的mRNA的逆轉錄正向擴增引物 <213> Reverse Transcription Forward Amplification Primers for DHRS13 Gene Transcribed mRNA
<400> 72 <400> 72
<210> 73 <210> 73
<211> 18 <211> 18
<212> DNA <212> DNA
<213> DHRS13基因轉錄的mRNA的逆轉錄反向擴增引物 <213> Reverse Transcription Reverse Amplification Primers for DHRS13 Gene Transcribed mRNA
<400> 73 <400> 73
<210> 74 <210> 74
<211> 18 <211> 18
<212> DNA <212> DNA
<213> PDZK1IP1基因轉錄的mRNA的逆轉錄正向擴增引物 <213> Reverse Transcription Forward Amplification Primer of PDZK1IP1 Gene Transcribed mRNA
<400> 74 <400> 74
<210> 75 <210> 75
<211> 18 <211> 18
<212> DNA <212> DNA
<213> PDZK1IP1基因轉錄的mRNA的逆轉錄反向擴增引物 <213> Reverse transcription reverse amplification primers for mRNA transcribed from PDZK1IP1 gene
<400> 75 <400> 75
<210> 76 <210> 76
<211> 23 <211> 23
<212> DNA <212> DNA
<213> VSIG10基因轉錄的mRNA的逆轉錄正向擴增引物 <213> Reverse Transcription Forward Amplification Primers for VSIG10 Gene Transcribed mRNA
<400> 76 <400> 76
<210> 77 <210> 77
<211> 23 <211> 23
<212> DNA <212> DNA
<213> VSIG10基因轉錄的mRNA的逆轉錄反向擴增引物 <213> Reverse Transcription Reverse Amplification Primers for VSIG10 Gene Transcribed mRNA
<400> 77 <400> 77
<210> 78 <210> 78
<211> 19 <211> 19
<212> DNA <212> DNA
<213> CSNK1G2基因轉錄的mRNA的逆轉錄正向擴增引物 <213> Reverse transcription of the CSNK1G2 gene transcribed mRNA forward amplification primer
<400> 78 <400> 78
<210> 79 <210> 79
<211> 18 <211> 18
<212> DNA <212> DNA
<213> CSNK1G2基因轉錄的mRNA的逆轉錄反向擴增引物 <213> Reverse transcription reverse amplification primers for mRNA transcribed from the CSNK1G2 gene
<400> 79 <400> 79
<210> 80 <210> 80
<211> 20 <211> 20
<212> DNA <212> DNA
<213> DECR1基因轉錄的mRNA的逆轉錄正向擴增引物 <213> Reverse transcription forward amplification primers for mRNA transcribed from the DECR1 gene
<400> 80 <400> 80
<210> 81 <210> 81
<211> 18 <211> 18
<212> DNA <212> DNA
<213> DECR1基因轉錄的mRNA的逆轉錄反向擴增引物 <213> Reverse transcription reverse amplification primers for mRNA transcribed from the DECR1 gene
<400> 81 <400> 81
<210> 82 <210> 82
<211> 22 <211> 22
<212> DNA <212> DNA
<213> FARP1基因轉錄的mRNA的逆轉錄正向擴增引物 <213> Reverse Transcription Positive Amplification Primers for FARP1 Gene Transcribed mRNA
<400> 82 <400> 82
<210> 83 <210> 83
<211> 18 <211> 18
<212> DNA <212> DNA
<213> FARP1基因轉錄的mRNA的逆轉錄反向擴增引物 <213> Reverse transcription reverse amplification primers for mRNA transcribed from FARP1 gene
<400> 83 <400> 83
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EP3129509B1 (en) * | 2014-04-10 | 2020-06-17 | Bio-Marcare Technologies Ltd. | Methods and kits for identifying pre-cancerous colorectal polyps and colorectal cancer |
CN107121417B (en) * | 2017-04-19 | 2019-10-22 | 中国科学院理化技术研究所 | Fluorescent chemical sensor for detecting sodium hydrosulfite and preparation method and application thereof |
CN109280707A (en) * | 2018-12-11 | 2019-01-29 | 宁夏医科大学总医院 | A kind of circular rna hsa_circPDE4D_040 and its specificity amplification primer and application |
CN109371029A (en) * | 2018-12-11 | 2019-02-22 | 宁夏医科大学总医院 | A kind of circular rna hsa_circPDE4D_033 and its specificity amplification primer and application |
CN109371028A (en) * | 2018-12-11 | 2019-02-22 | 宁夏医科大学总医院 | A kind of circular rna hsa_circPDE4D_044 and its specificity amplification primer and application |
CN111172288A (en) * | 2020-03-13 | 2020-05-19 | 复旦大学附属肿瘤医院 | Colorectal cancer polygene screening probe and application thereof |
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CN1167827A (en) * | 1996-06-07 | 1997-12-17 | 浙江医科大学 | Negative related gene of large intestine cancer |
CN101415837A (en) * | 2003-07-18 | 2009-04-22 | 优基谱 | Biomarker panel for colorectal cancer |
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EP2297338A2 (en) * | 2008-05-30 | 2011-03-23 | Ordway Research Institute, Inc. | Methods for disease therapy |
EP2576815B1 (en) * | 2010-06-04 | 2018-02-14 | Biomérieux | Method for the prognosis of colorectal cancer |
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CN1167827A (en) * | 1996-06-07 | 1997-12-17 | 浙江医科大学 | Negative related gene of large intestine cancer |
CN101415837A (en) * | 2003-07-18 | 2009-04-22 | 优基谱 | Biomarker panel for colorectal cancer |
WO2011153684A1 (en) * | 2010-06-08 | 2011-12-15 | Biomerieux | Method and kit for the prognosis of colorectal cancer |
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TW201425587A (en) | 2014-07-01 |
CN105907859A (en) | 2016-08-31 |
CN105907859B (en) | 2020-01-17 |
CN103667437A (en) | 2014-03-26 |
TW201716585A (en) | 2017-05-16 |
TWI691601B (en) | 2020-04-21 |
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