TW201031755A - Gene markers and primers for sex identification of crested serpent eagles and crested goshawks - Google Patents
Gene markers and primers for sex identification of crested serpent eagles and crested goshawks Download PDFInfo
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201031755 六、發明說明: 【發明所屬之技術領域】 之性^冠8與鳳頭蒼鷹 【先前技術】 在稀有飛禽類之保育繁殖工作上,正確的性別鑑 -去殖效率。單態性鳥類性別判定不易由外觀鑑定; 内視鏡檢測體内雜腺予以判定,但容易受到年齡 • ==所影㈣有誤判。因此發展出以飛禽類之基因標記 • , 土因’其在染色體2與1的内插子大小不同,因此以 來合酶連鎖反應(PCR)擴增產物,雄性會產生一條片段,雌 陡曰產生2條片段。常用的引子組中只有引子組1237l/1272h 旎夠分辨大冠鷲性別,其他的引子組則不行(Wang,L. c.,c. τ. . Chen, Η. Υ. Lee, S. Η. Li, J. T. Lir, S. C. Chin, C. E. Pu, and C. H. • Wang; Sexing a wider range of avian species based on two CHD1 mtrons with a unified reaction condition. Zoo biology 26: 425-431, 2007)。雖然利用引子組1237L/1272可判定大冠鷲性別,其所’ 巧增出來的Q7Z)7-F與C//D7-Z大小非常相近,需使用非 常咼濃度的瓊脂膠體(例如4%)以及較長電泳時間才能夠將 • 片段稍為分開,或需要利用高解析的10-12%聚丙烯醯胺凝膠 電泳(polyacrylamide gel electrophoresis,PAGE)進行區分201031755 VI. Description of the invention: [Technical field to which the invention belongs] The sex crown 8 and the crested goshawk [Prior Art] In the conservation and reproduction of rare birds, the correct gender-removal efficiency. The determination of the sex of a singlet bird is not easy to be identified by the appearance; the endoscopic examination of the body's heterogeneous gland is judged, but it is easy to be affected by the age of === (4). Therefore, the genetic marker of the bird has been developed. The soil is different in the size of the interposer on chromosomes 2 and 1. Therefore, the synthase chain reaction (PCR) amplification product, the male will produce a fragment, and the female is steeply produced. 2 pieces. Among the commonly used primer groups, only the primer group 1237l/1272h is enough to distinguish the gender of the big crown, and the other primer groups are not. (Wang, L. c., c. τ. . Chen, Η. Υ. Lee, S. Η. Li, JT Lir, SC Chin, CE Pu, and CH • Wang; Sexing a wider range of avian species based on two CHD1 mtrons with a unified reaction condition. Zoo biology 26: 425-431, 2007). Although the primer group 1237L/1272 can be used to determine the gender of the big crown, the Q7Z) 7-F and C//D7-Z are very similar in size, and a very high concentration of agar colloid (for example, 4%) is required. And longer electrophoresis time to be able to separate the fragments slightly, or to distinguish them with high-resolution 10-12% polyacrylamide gel electrophoresis (PAGE)
_ ( Griffiths, R., M. C. Double, K. Orr, and R. J. Dawson; A DNA test to sex most birds. Mol. Ecol. 7: 1071-1075, 1998; Kahn, N. • W., J. S. John, and T. W. Quinn.; Chromosome-specific intron size differences in the avian CHD gene provide an efficient method for sex identification in birds. Auk. 115: 1074-1078., 1998),這些都 增加了試驗成本以及所花費的時間。_ ( Griffiths, R., MC Double, K. Orr, and RJ Dawson; A DNA test to sex most birds. Mol. Ecol. 7: 1071-1075, 1998; Kahn, N. • W., JS John, and TW Quinn.; Chromosome-specific intron size differences in the avian CHD gene provide an efficient method for sex identification in birds. Auk. 115: 1074-1078., 1998), all of which increase the cost of the trial and the time spent.
Chang et al. (Chang, H. W., C. A. Cheng, D. L. Gu, C. C. Chang, S. H. Su, C. H. Wen, Y. C. Chou, T. C. Chou, C. T. Yao, C. 3 201031755 L. Tsai, and C. C. Cheng, High-throughput avian molecular sexing by SYBR green-based real-time PGR combined with melting curve analysis. BMC Biotechnol. 8: 12, 2008)利用 PCR-解離曲線分析(PCR-melting curve analysis,PCR/MCA)技 術’根據C//D7-PF與C//D7-Z序列設計二組新的大冠鷲性 別鑑定引子組(CHD-W-F/CHD-W-R 和 CHD-Z-F/CHD-Z-R),能夠使 與 QiDY-Z 片段大小 差異大,易於辨識。然而此法需使用二組引子組,以及使用即 時聚合酶連鎖反應(real time PCR)機器才能夠完成性別鑑 定’需要更多的技術配合,執行方法困難。Chang et al. (Chang, HW, CA Cheng, DL Gu, CC Chang, SH Su, CH Wen, YC Chou, TC Chou, CT Yao, C. 3 201031755 L. Tsai, and CC Cheng, High-throughput avian molecular SMC Biotechnol. 8: 12, 2008) Using PCR-melting curve analysis (PCR/MCA) technique 'according to C//D7- The PF and C//D7-Z sequences were designed into two new sets of large crowns and gender identification primers (CHD-WF/CHD-WR and CHD-ZF/CHD-ZR), which can make the difference with the size of QiDY-Z fragments. Easy to identify. However, this method requires the use of two sets of primers, and the use of instant polymerase chain reaction (real time PCR) machines to complete gender identification.
.有鑑於此,尋找性別特異片段差異更大,且能快速分析與 更準確判讀性別的標記DNA序列,並進而開發可用以有效且 快速鑑定大冠鷲性別之引子組是有其必要的。 【發明内容】 ' 為解決先前技術的限制,使大冠鷲性別鑑定能夠更為迅 速’本發明目的在提供大冠鷲的性別特異性核苷酸片段,利用 此丨生別特異性#段開發&得以有效鑑定大冠I性別的引子 =進而,為能财效且更為迅麵定綠雜別之方法及 j ’以提南人工配對繁殖效率,進而達到對於此台灣稀有的 保月類野生動物的保育繁殖。 牲w ί發,之—方面’為提供—種用以鑑別大冠S性別之性別 特異性之核賊—。依本發明’ 逢機增殖錢性dna t=amphfied pdymQrphie DNA,技術從大冠鷲 ii指紋環帶中,找到2個性別特異性之標記核 ίϊΐ带t名為麵8與ati5,分別具有⑽及個In view of this, it is necessary to find a marker DNA sequence that has a greater difference in gender-specific fragments and can quickly analyze and more accurately interpret gender, and then develop a primer set that can be used to effectively and quickly identify the sex of the big crown. SUMMARY OF THE INVENTION 'In order to solve the limitations of the prior art, the sex identification of the big crown can be made more rapid' The purpose of the present invention is to provide a gender-specific nucleotide fragment of the Great Crown, using this twin specificity & can effectively identify the leader of the big crown I gender = further, in order to be able to achieve financial efficiency and more rapid green and miscellaneous methods and j 'to mention the artificial breeding efficiency of the South, and then to reach this Taiwan's rare lunar month Conservation and breeding of wild animals. The animal is provided with a nuclear thief that is used to identify the gender specificity of the S. According to the invention of the invention, the proliferation of the DNA dna t=amphfied pdymQrphie DNA, the technology from the big crown 鹫 ii fingerprint ring, found two gender-specific markers nuϊΐ belt t named face 8 and ati5, respectively (10) and One
; SEQID 冠驚基因·Λ^^: 2。與以&發現之大 ’4提供—糊⑽取冠紐別之引子 糸_本發魏別大冠胁狀性職異性之辟酸片段 4 201031755 SEQIDNO (序列識別號):1或SEQIDNO : 2設計。 本發明之再一方面,為提供一種大冠鷲性別鑑定之方法。 在本發明之具體實施例中,根據本發明選殖之性別特異性 核苷酸片段BB08與AT15,設計出多組可用於鑑定大冠鷲性 別的引子組’包括 CseBB08-5aF/R 、 CseBB08-5aF/CseBB08-5bR 、 CseBB08-7F/R 和 CseAT15F/R,如表 1 所列: 表1 鑑定大冠鷲性別的引子組 性別特 異片段 引子名稱 引子序列(5'—3') CseBB08-5aF/ R F: CTGCAGCTGTTAATCCTCTCTC ( SEQ ID NO: 3 ) R: TTACACTGACGGATTGCGTGGT ( SEQ ID NO: 4) BB08 CseBB08-5aF/ CseBB08-5bR F: CTGCAGCTGTTAATCCTCTCTC ( SEQ ID NO: 5) R: TTGGTGTTCCAAGTGGTGTTCC ( SEQ ID NO: 6 ) CseBB08-7F/R F: CTAGACTAATAGGTTGCGGTCC ( SEQ ID NO: 7 ) R: GGTGGCGATATGTATTCACTGC ( SEO ID NO: 8 ) ATI 5 CseAT15F/R F: GTAACGGATACTCTGACCAGGA ( SEQ ID NO: 9 ) R: GTGCACCAGTGTCTACTAGAGC ( SEQ ID NO: 10 ) 根據本發明’同時發現引子組CseBB08_5aF/CseBB08-5bR 亦可跨物種而應用於辨別鳳頭蒼鷹性別,因此,本發明之又一 方面’為提供一種用以鑑別鳳頭蒼鷹性別之引子組; SEQID crown gene · Λ ^ ^: 2. And the discovery of the big '4' - the paste (10) to take the lead of the 糸 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ design. In a further aspect of the invention, a method for sex identification of a large crown is provided. In a specific embodiment of the present invention, according to the sex-specific nucleotide fragments BB08 and AT15 of the present invention, a plurality of sets of primers which can be used to identify the sex of the big crown are designed to include 'CseBB08-5aF/R, CseBB08- 5aF/CseBB08-5bR, CseBB08-7F/R and CseAT15F/R, as listed in Table 1: Table 1 Identification of the gender-specific fragment of the big crown 鹫 gender-specific fragment introduction primer sequence (5'-3') CseBB08-5aF/ RF: CTGCAGCTGTTAATCCTCTCTC (SEQ ID NO: 3) R: TTACACTGACGGATTGCGTGGT (SEQ ID NO: 4) BB08 CseBB08-5aF/ CseBB08-5bR F: CTGCAGCTGTTAATCCTCTCTC (SEQ ID NO: 5) R: TTGGTGTTCCAAGTGGTGTTCC (SEQ ID NO: 6) CseBB08- 7F/RF: CTAGACTAATAGGTTGCGGTCC (SEQ ID NO: 7) R: GGTGGCGATATGTATTCACTGC (SEO ID NO: 8) ATI 5 CseAT15F/RF: GTAACGGATACTCTGACCAGGA (SEQ ID NO: 9) R: GTGCACCAGTGTCTACTAGAGC (SEQ ID NO: 10) According to the present invention At the same time, it is found that the introduction group CseBB08_5aF/CseBB08-5bR can also be used to distinguish the gender of the crested goshawk across species, therefore, another aspect of the present invention is to provide an introduction for identifying the sex of the crested goshawk.
CseBB08-5aF/CseBB08-5bR。 在本發明之具體實施例中,根據本發明選殖之性別特異性 核苦酸片段BB08與AT15設計開發得之引子組進行大冠鷲基 因組選殖,發現下列性別特異性核苷酸片段: (1) 以引子組CseBB08-5aF和CseBB08-5aR增幅大冠鷲 基因組DNA ’電泳膠圖如圖2,雌性大冠鷲發現有一 553bp 之性別特異核苷酸片段,具有核苷酸序列如SEQIDNO:ll ; (2) 以引子組CseBB08-5aF和CseBB08-5bR增幅大冠鷲 基因組DNA,電泳膠圖如圖3雌性大冠鷲發現有一 895bp之 性別特異核苷酸片段’具有核苷酸序列如SEQIDN0..12 ; 5 201031755 (3 )以引子組CseBB08_7F和CseBB08-7R增幅大冠驚基 因組DNA ’電泳膠圖如圖4,雌性及雄性大冠鹫均發現有一 543bp之内在控制核苷酸片段,具有核苷酸序列如XSEQ ID NO:13 ;及雌性大冠鷲發現有一 i93bp之性別特異核苷酸片 段,具有核苷酸序列如SEQIDNO:14 ;及 (4)以引子組CseATbF和CseATHR增幅大冠驚基因 組DNA’電泳膠圖如圖5,雌性及雄性大冠鷲均發現有一 734bp 之内在控制核苦酸片段’具有核皆酸序列如SEQ ID N0.15 ;CseBB08-5aF/CseBB08-5bR. In a specific embodiment of the present invention, the sex-specific nuclear acid fragment BB08 and the AT15 designed and developed according to the present invention are used to carry out the genome selection of the large crown, and the following sex-specific nucleotide fragments are found: 1) Using the primer set CseBB08-5aF and CseBB08-5aR to increase the genomic DNA of the large crown ' genomic DNAFig. 2, the female big crown 鹫 found a 553 bp sex-specific nucleotide fragment with a nucleotide sequence such as SEQ ID NO: ll (2) The genomic DNA of the large crown scorpion was amplified by the primer group CseBB08-5aF and CseBB08-5bR. The electrophoresis gel map is shown in Fig. 3. The female gentian cockroach found a 895 bp sex-specific nucleotide fragment with a nucleotide sequence such as SEQ IDN0. .12 ; 5 201031755 (3) The primers CseBB08_7F and CseBB08-7R increase the large-crown genomic DNA 'electrophoresis gel map as shown in Figure 4. Female and male big crown mites have found a 543 bp internal control nucleotide fragment with nucleus The nucleotide sequence, such as XSEQ ID NO: 13; and the female Great Crown, found a sex-specific nucleotide fragment of i93 bp, having a nucleotide sequence such as SEQ ID NO: 14; and (4) increasing the size of CseATbF and CseATHR by the primer group. Genomic DNA' Swimming gum FIG 5, the male and female eagles are found in internal control core of a 734bp fragment bitter acids' are having a core acid sequence as SEQ ID N0.15;
及雌性大冠鷲發現有一 147bp之性別特異核苷酸片段,具有核 苷酸序列如SEQIDNO:16。 八 A 根據本發明’上述任一性別特異核苷酸片段,均可用於辨 別大冠鷲性別。 ' 本發明之又一方面,為提供一種用以鑑別鳳頭蒼鷹之引子 組’係利用本發明引子組’針對待鑑定之大冠鷲樣本進行pCR 反應加以鑑別。根據本發明之實施例,可使用引子組And the female Great Crown was found to have a 147 bp sex-specific nucleotide fragment having a nucleotide sequence such as SEQ ID NO: 16. VIII A Any of the above-described sex-specific nucleotide fragments according to the present invention can be used to discriminate the sex of the Great Crown. In still another aspect of the present invention, a primer set for identifying a Crested Goshawk is identified by using the primer set of the present invention for a pCR reaction of a large crown sample to be identified. According to an embodiment of the present invention, an introduction group can be used
CseBB08-5aF/R > CseBB08-5aF/CseBB08-5bR ^ CseBB08-7F/R 或CseAT15F/R鑑別大冠鷲之性別,準確率達loo%。 根據本發明實施例,係利用引子組CseBB08-5aF/R,針對 待鑑疋之大冠鷲樣本進行PCR反應加以鑑別,以具有seqid W):ll之核苦酸序列片段為n准性性別標記片段。 根據本發明實施例,係利用引子組 CseBB08-5aF/CseBB08-5bR ’針對待鑑定之大冠鷲樣本進行 PCR反應加以鑑別,以具有SEQIDNO:12之核苷酸序列片段 為雌性性別標記片段。 又 根據本發明實施例,係利用引子組CseBB08-7F/R,針對 待鑑定之大冠鷲樣本進行PCR反應加以鑑別,以具有SEQm NO:13之核普g曼序歹ij片段為一内在控制片段,及具有seq id NO:14之核普酸序列片段為hi#性性別標記片段。 根據本發明實施例’係利用引子組CseAT15F/R,針對待鐘 定之大冠鷲樣本進行PCR反應加以鑑別,以具有犯Q IDNO:l5 6 201031755 之核苷酸序列片段為一内在控制片段,及具有SEQ ID NO:16 之核苷酸序列片段為雌性性別標記片段。 、本發明之又再一方面,為提供一種鳳頭蒼鷹性別鑑定之方 法’係利用本發明引子組CseBB08-5aF和CseBB08-5bR,針 對待鐘定之大冠鷲樣本進行PCR反應加以鑑別。 在本發明之具體實施例中,以引子組CseBB〇8_5aF和 CseBB08-5bR增幅鳳頭蒼鷹基因組DNA ’電泳膠圖如圖6, ^ 雌性鳳頭蒼鷹發現有一 895bp之性別特異性核苷酸片段,具有 , 核苷酸序列如SEQIDN〇:17,其可用於辨別鳳頭蒼鷹性別。 根據本發明實施例,一鳳頭蒼鷹性別鑑定之方法係利用引 ® 子組CseBB08-5aF和CseBB08-5bR ’針對待鑑定之鳳頭蒼鷹樣 本進行PCR反應加以鑑別,以具有seq ID NO·· 17之核苷酸序 列片段為雌性性別標記片段。 . 本發明同時提供一種鑑別大冠鷲或鳳頭蒼鷹性別鑑定之 PCR套組。對於本發明所屬技術領域中具有通常知識者,得依 . 一般知識組合本發明引子組,以及為進行PCR反應之必要試 劑及器具,製備開發供商業使用之PCR套組。 【實施方式】 實施例一 DNA萃取及定量 p —、基因組DNA之萃取 1.血液樣本之基因組DNA萃取 參考 Wu β a/. (Wu, C. P.,Υ· M. Homg,R. T. Wang,K. T. Yang, and M. C. Huang, A novel sex-specific DNA marker in columbidae birds. Theriogenology 61 328-333, 20〇7)所揭示之 方法修飾以萃取血液樣本中之基因組DNA。首先將新鮮的血 液樣本以3500rpm離心15分鐘以分離血漿,並以生理食鹽 水潤洗血球層2次。取20 μΐ的血球,加入3 ml的裂解緩 衝液(lysis buffer,内含 1〇 mM Tris-Cl,150 mM NaCl, 10 mM EDTA,pH=8.0)懸浮’再加入 60 μΐ 蛋白酶 K (proteinase K) (10mg/ml)(Amresco ’ 美國)以及 2〇〇μ1 的 l〇〇/〇 SDS 混合均 7 201031755 勻,於55°C作用12小時以上。之後依序以等體積的酚 (phenol)、酚(phenol)/氯仿(chloroform)和氯仿(chl〇roform)萃 取水層’再加入0.8倍體積的100%異丙醇(isopropanol)沉 澱’沉澱之DNA分別以1 ml 70%酒精潤洗2次。待DNA 乾燥後加入適量去離子水(ddH20),於55°C回溶,待DNA 回溶後’先檢測DNA品質及定量’如DNA品質及含量皆 不錯時,保存於-80°C。 r 2·組織樣本之基因組DNA萃取 首先取組織0.1 g放入1.5 ml微量離心管,加入500 μΐ 的裂解緩衝液(lysis buffer)後,以剪刀將組織剪碎,再加入 ❿ 100 μΐ 1〇% SDS 以及 60 μΐ 蛋白酶 K (proteinase K) (10mg/ml) (Amresco ’美國)混合均勻,於55°C作用12小時以上。之 後依序以等體積的驗(phenol)、酚(phenol)/氯仿(chloroform)和 氣仿(chloroform)萃取水層,再加入〇.8倍體積的1〇〇%異丙 ' 醇(isopropanol)沉澱,沉澱之DNA分別以1 ml 70%酒精 . 潤洗2次。待DNA乾燥後加入適量ddH20,於55°C回 溶’待DNA回溶後,先檢測DNA品質及定量,如DNA品 質及含量皆不錯時,保存於-8(TC。 3.DNA定量 以分光光度計(NanoDrop 1000, Thermo Scientific,美國) 偵測260與280 nm兩波長之吸光度(〇D值),以 OD260/280判斷核酸純度(一般〇D26〇/28〇比值應在 : [8-2.0之間),並以OD260吸光值推算DNA濃度。DNA定 . 量後’取部份DNA樣品以ddHsO調整DNA濃度分別成為 10和50ng&卜保存於_20°C供分子鑑定之用。 實施例二大冠鷲性別特異性核苷酸片段之選殖 -、RAPD指紋鑑定 本試驗以大冠鷲和領角鸮基因組DNA為模板,所使用的 逢機引子序列來自RAPD 1〇 mers kits (OperonCseBB08-5aF/R > CseBB08-5aF/CseBB08-5bR ^ CseBB08-7F/R or CseAT15F/R identifies the sex of the big crown, with an accuracy rate of loo%. According to an embodiment of the present invention, a primer reaction group CseBB08-5aF/R is used to identify a PCR reaction of the large crown scorpion sample to be identified, and the nucleotide sequence fragment having seqid W): ll is a n-specific sex marker. Fragment. According to an embodiment of the present invention, the primer set CseBB08-5aF/CseBB08-5bR ' is used for PCR reaction of the large crown sample to be identified, and the nucleotide sequence fragment having SEQ ID NO: 12 is a female sex marker fragment. According to an embodiment of the present invention, a PCR reaction is performed on the large crown scorpion sample to be identified by using the primer set CseBB08-7F/R, and the nucleoside 歹ij fragment having SEQm NO: 13 is used as an internal control. The fragment, and the nucleotide sequence fragment having seq id NO: 14 is a hi# sex sex marker fragment. According to an embodiment of the present invention, a primer reaction group CseAT15F/R is used to identify a PCR reaction of a large crown sample to be determined, and a nucleotide sequence fragment having a Q IDNO: l5 6 201031755 is an internal control segment, and The nucleotide sequence fragment having SEQ ID NO: 16 is a female sex marker fragment. In still another aspect of the present invention, in order to provide a method for gender identification of the Crested Goshawk, the primers CseBB08-5aF and CseBB08-5bR of the present invention are used to identify a PCR reaction of the Dendrobium sinensis sample. In a specific embodiment of the present invention, the genomic DNA of the Crested Goshawk genomic DNA is amplified by the primer set CseBB〇8_5aF and CseBB08-5bR as shown in Fig. 6. ^ The female Crested Goshawk found a 895 bp sex-specific nucleotide The fragment, having, has a nucleotide sequence such as SEQ ID NO: 17, which can be used to discriminate the sex of the Crested Goshawk. According to an embodiment of the present invention, a method for sex identification of a Crested Goshawk is identified by using a PCR subgroup CseBB08-5aF and CseBB08-5bR 'for a PCR reaction of a Crested Goshawk sample to be identified to have a seq ID NO· · The nucleotide sequence fragment of 17 is a female sex marker fragment. The invention also provides a PCR kit for identifying the sex identification of the Great Crown or the Crested Goshawk. For those of ordinary skill in the art to which the present invention pertains, it is common to combine the primer set of the present invention with the necessary reagents and apparatus for performing the PCR reaction to prepare a PCR kit for commercial use. [Examples] Example 1 DNA extraction and quantification of p-, genomic DNA extraction 1. Genomic DNA extraction of blood samples with reference to Wu β a/. (Wu, CP, Υ·M. Homg, RT Wang, KT Yang, and The method disclosed in MC Huang, A novel sex-specific DNA marker in columbidae birds. Theriogenology 61 328-333, 20〇7) is modified to extract genomic DNA in a blood sample. The fresh blood sample was first centrifuged at 3500 rpm for 15 minutes to separate the plasma, and the blood cell layer was washed twice with physiological saline. Take 20 μΐ of blood cells, add 3 ml of lysis buffer (containing 〇 mM Tris-Cl, 150 mM NaCl, 10 mM EDTA, pH=8.0) to suspend 'add 60 μM proteinase K (proteinase K) (10mg/ml) (Amresco 'United States) and 2〇〇μ1 l〇〇/〇SDS mixed 7 201031755 evenly, at 55 ° C for more than 12 hours. The aqueous layer was then sequentially extracted with an equal volume of phenol, phenol/chloroform and chloroform (chl〇roform) and then added with 0.8 volumes of 100% isopropanol to precipitate the precipitate. The DNA was washed twice with 1 ml of 70% alcohol. After the DNA is dried, add appropriate amount of deionized water (ddH20) and dissolve at 55 °C. After the DNA is re-dissolved, first check the DNA quality and quantitation. If the DNA quality and content are good, store at -80 °C. r 2 · Tissue sample genomic DNA extraction First, take 0.1 g of tissue into a 1.5 ml microcentrifuge tube, add 500 μΐ of lysis buffer, and then cut the tissue with scissors, then add ❿ 100 μΐ 1〇% SDS and 60 μM proteinase K (10 mg/ml) (Amresco 'USA) were uniformly mixed and allowed to act at 55 ° C for more than 12 hours. The aqueous layer was then extracted with equal volumes of phenol, phenol/chloroform and chloroform, followed by 8 times volume of 1% isopropyl alcohol (isopropanol) precipitation. The precipitated DNA was washed twice with 1 ml of 70% alcohol. After the DNA is dried, add appropriate amount of ddH20 and re-dissolve at 55 °C. After the DNA is dissolved, the DNA quality and quantitation are first detected. If the DNA quality and content are good, it is stored at -8 (TC. 3. DNA quantification by spectrometry Photometer (NanoDrop 1000, Thermo Scientific, USA) Detects the absorbance at 260 and 280 nm (〇D value), and judges the purity of the nucleic acid with OD260/280 (generally 〇D26〇/28〇 ratio should be: [8-2.0 The DNA concentration is estimated by the OD260 absorbance value. After the DNA is determined, the DNA sample is adjusted to ddHsO to adjust the DNA concentration to 10 and 50 ng & and stored at -20 ° C for molecular identification. Selection of sex-specific nucleotide fragments of two crowns - RAPD fingerprint identification This experiment uses the genomic DNA of the big crown and the scorpion scorpion as a template, and the used primer sequence from RAPD 1〇mers kits (Operon)
Biotechnologies,德國)所設計的6組引子組(〇pBA、 8 201031755 OPBB、OPBC、OPAN、OPAT 和 OPAZ) ’ 合計 120 條逢機 引子(random primer),所使用逢機引子序列如表2所示。Biotechnologies, Germany) designed 6 sets of primers (〇pBA, 8 201031755 OPBB, OPBC, OPAN, OPAT and OPAZ) 'Total 120 random primers, the sequence of the primers used is shown in Table 2. .
表2逢機引子序列Table 2
引子編號· 引子序列(5'—3’) 引子編號 引子序列(5’—3') 引子編號 引子序列Θ—30 OPBA-01 TTCCCCACCC OPBB-01 ACACTGGCTG OPBC-01 CCTTCGGCTC OPBA-02. TGCTCGGCTC OPBB-02 CCCCCGTTAG OPBC-02 ACAGTAGCGG OPBA-03. GTGCGAGAAC OPBB-03 TCACGTGGCT OPBC-03 GGCTTGACCT OPBA-04 TCCTAGGCTC OPBB-04 ACCAGGTCAC OPBC-04 CCACGTGCCA OPBA-05 TGCGTTCCAC OPBB-05 GGGCCGAACA OPBC-05 GAGGCGATTG OPBA-06 GGACGACCGT OPBB-06 CTGAAGCTGG OPBC-06 GAAGGCGAGA OPBA-〇7 GGGTCGCATC OPBB-07 GAAGGCTGGG OPBC-07 TGTGCCTGAC OPBA-08 CCACAGCCGA OPBB-08 TCGTCGAAGG OPBC-08 GGTCTTCCCT OPBA-09 GGAACTCCAC OPBB-09 AGGCCGGTCA OPBC-09 GTCATGCGAC OPBA-10 GGACGTTGAG OPBB-10 ACTTGCCTGG OPBC-10 AACGTCGAGG OPBA-11 CCACCTTCAG OPBB-11 TGCGGGTTCC OPBC-11 TTTTGCCCCC OPBA-12. TGTTGGGCAC OPBB-12 TTCGGCCGAC OPBC-12 CCTCCACCAG OPBA-13 AGGGCGAATG OPBB-13 CTTCGGTGTG OPBC-13 CCTGGCACAG OPBA-14, TCGGGAGTGG OPBB-14 GTGGGACCTG OPBC-14 GGTCCGACGA OPBA-15 GAAGACCTGG OPBB-15 AAGTGCCCTG OPBC-15 CCAGACTCCA OPBA-16 CCACGCATCA OPBB-16 TCGGCACCGT OPBC-16 CTGGTGCTCA OPBA-17 TGTACCCCTG OPBB-17 ACACCGTGCC OPBC-17 CCGTTAGTCC OPBA-18 CTCGGATGTC OPBB-18 CAACCGGTCT OPBC-18 GTGAAGGAGG OPBA-19 CCATCCGTTG OPBB-19 TTGCGGACAG OPBC-19 ACAAGCGCGA OPBA-20 GAGCGCTACC OPBB-20 CCAGGTGTAG OPBC-20 AGCACTGGGG OPAN-01 ACTCCACGTC OPAT-01 CAGTGGTTCC OPAZ-01 TCGGATCCGT OPAN-02 CACCGCAGTT OPAT-02 CAGGTCTAGG OPAZ-02 CCTGAACGGA OPAN-03 AGCCAGGCTG OPAT-03 GACTGGGAGG OPAZ-03 GGCTGTGTGG OPAN-04 GGCGTAAGTC OPAT-04 TTGCCTCGCC OPAZ-04 CCAGCCTCAG OPAN-05 GGGTGCAGTT OPAT-05 ACACCTGCCA OPAZ-05 TCCGCATACC OPAN-06 GGGAACCCGT OPAT-06 CCGTCCCTGA OPAZ-06 CCTTCGGAGG OPAN-07 TCGCTGCGGA OPAT-07 ACTGCGACCA OPAZ-07 CACGAGTCTC OPAN-08 AAGGCTGCTG OPAT-08 TCCTCGTGGG OPAZ-08 TCGCTCGTAG OPAN-09 GGGGGAGATG OPAT-09 CCGTTAGCGT OPAZ-09 CCTTGACCCC OPAN-l〇 CTGTGTGCTC OPAT-10 ACCTCCGGTC OPAZ-10 ACTCTGGGGA OPAN-11 GTCCATGCAG OPAT-11 CCAGATCTCC OPAZ-11 TCCAGCGCGT OPAN-12. AACGGCGGTC OPAT-12 CTGCCTAGCC OPAZ-12 GATGGGCCTG OPAN-13 CTTCCAGGAC OPAT-13 CTGGTGGAAG OPAZ-13 CCCGAAGCAA OPAN-14 AGCCGGGTAA OPAT-14 GTGCCGCACT OPAZ-14 CACGGCTTCC OPAN-15 TGATGCCGCT OPAT-15 TGACGCACGG OPAZ-15 TCCGCTAGTC OPAN-16 GTGTCGAGTC OPAT-16 CTCTCCGTAG OPAZ-16 AGGCGAACTG OPAN-17 TCAGCACAGG OPAT-17 AGCGACTGCT OPAZ-17 CACGCAGATG OPAN-18 TGTCCTGCGT OPAT-18 CCAGCTGTGA OPAZ-18 CCGACGTTGA OPAN-19 ACCACGCCTT OPAT-19 ACCAAGGCAC OPAZ-19 ACACTCTCGG OPAN-20 GAGTCCTCAC OPAT-20 ACATCAGCCC ΟΡΆΖ-20 CATCACCCCT 201031755 PCR反應總體積為20μ卜内含50ngDNA、0.4μM核酸引 子和 10 μΐ 2X Taq DNA Polymerase Master Mix RED (Ampliqon, 丹麥)。反應條件為95°C加熱10分鐘,再以95°C加熱1分 鐘,36°C黏合1分鐘,72°C延展2分鐘,進行45個循環, 最後以72°C延展10分鐘。反應後取10μ1之PCR產物以2% 瓊脂膠體進行電泳分析,再以含EtBr染色液染色10分鐘,退 染20分鐘後,置於UV燈箱上觀察並以影像處理系統拍照存 -- 檐。Primer number · Primer sequence (5'-3') Primer number primer sequence (5'-3') Primer number primer sequence Θ-30 OPBA-01 TTCCCCACCC OPBB-01 ACACTGGCTG OPBC-01 CCTTCGGCTC OPBA-02. TGCTCGGCTC OPBB-02 CGGCGAGAAC OPBB-03 TCACGTGGCT OPBC-03 GGCTTGACCT OPBA-04 TCCTAGGCTC OPBB-04 ACCAGGTCAC OPBC-04 CCACGTGCCA OPBA-05 TGCGTTCCAC OPBB-05 GGGCCGAACA OPBC-05 GAGGCGATTG OPBA-06 GGACGACCGT OPBB-06 CTGAAGCTGG OPBC-06 GAAGGCGAGA OPBA-〇7 GGGTCGCATC OPBB-07 GAAGGCTGGG OPBC-07 TGTGCCTGAC OPBA-08 CCACAGCCGA OPBB-08 TCGTCGAAGG OPBC-08 GGTCTTCCCT OPBA-09 GGAACTCCAC OPBB-09 AGGCCGGTCA OPBC-09 GTCATGCGAC OPBA-10 GGACGTTGAG OPBB-10 ACTTGCCTGG OPBC -10 AACGTCGAGG OPBA-11 CCACCTTCAG OPBB-11 TGCGGGTTCC OPBC-11 TTTTGCCCCC OPBA-12. TGTTGGGCAC OPBB-12 TTCGGCCGAC OPBC-12 CCTCCACCAG OPBA-13 AGGGCGAATG OPBB-13 CTTCGGTGTG OPBC-13 CCTGGCACAG OPBA-14, TCGGGAGTGG OPBB-14 GTGGGACCTG OPBC -14 GGTCCGACGA OPBA-15 GAAGACCTGG OPBB-15 AAGTGCCCTG OPBC-15 CCAGACTCCA OPBA-16 CC ACGCATCA OPBB-16 TCGGCACCGT OPBC-16 CTGGTGCTCA OPBA-17 TGTACCCCTG OPBB-17 ACACCGTGCC OPBC-17 CCGTTAGTCC OPBA-18 CTCGGATGTC OPBB-18 CAACCGGTCT OPBC-18 GTGAAGGAGG OPBA-19 CCATCCGTTG OPBB-19 TTGCGGACAG OPBC-19 ACAAGCGCGA OPBA-20 GAGCGCTACC OPBB -20 CCAGGTGTAG OPBC-20 AGCACTGGGG OPAN-01 ACTCCACGTC OPAT-01 CAGTGGTTCC OPAZ-01 TCGGATCCGT OPAN-02 CACCGCAGTT OPAT-02 CAGGTCTAGG OPAZ-02 CCTGAACGGA OPAN-03 AGCCAGGCTG OPAT-03 GACTGGGAGG OPAZ-03 GGCTGTGTGG OPAN-04 GGCGTAAGTC OPAT-04 TTGCCTCGCC OPAZ-04 CCAGCCTCAG OPAN-05 GGGTGCAGTT OPAT-05 ACACCTGCCA OPAZ-05 TCCGCATACC OPAN-06 GGGAACCCGT OPAT-06 CCGTCCCTGA OPAZ-06 CCTTCGGAGG OPAN-07 TCGCTGCGGA OPAT-07 ACTGCGACCA OPAZ-07 CACGAGTCTC OPAN-08 AAGGCTGCTG OPAT-08 TCCTCGTGGG OPAZ -08 TCGCTCGTAG OPAN-09 GGGGGAGATG OPAT-09 CCGTTAGCGT OPAZ-09 CCTTGACCCC OPAN-l〇CTGTGTGCTC OPAT-10 ACCTCCGGTC OPAZ-10 ACTCTGGGGA OPAN-11 GTCCATGCAG OPAT-11 CCAGATCTCC OPAZ-11 TCCAGCGCGT OPAN-12. AACGGCGGTC OPAT-12 CTGCCTAGCC OPAZ -12 GATGGGCCTG OPAN-13 CTTCCAGGAC OP AT-13 CTGGTGGAAG OPAZ-13 CCCGAAGCAA OPAN-14 AGCCGGGTAA OPAT-14 GTGCCGCACT OPAZ-14 CACGGCTTCC OPAN-15 TGATGCCGCT OPAT-15 TGACGCACGG OPAZ-15 TCCGCTAGTC OPAN-16 GTGTCGAGTC OPAT-16 CTCTCCGTAG OPAZ-16 AGGCGAACTG OPAN-17 TCAGCACAGG OPAT- 17 AGCGACTGCT OPAZ-17 CACGCAGATG OPAN-18 TGTCCTGCGT OPAT-18 CCAGCTGTGA OPAZ-18 CCGACGTTGA OPAN-19 ACCACGCCTT OPAT-19 ACCAAGGCAC OPAZ-19 ACACTCTCGG OPAN-20 GAGTCCTCAC OPAT-20 ACATCAGCCC ΟΡΆΖ-20 CATCACCCCT 201031755 The total PCR reaction volume is 20μ Contains 50 ng of DNA, 0.4 μM nucleic acid primer and 10 μΐ 2X Taq DNA Polymerase Master Mix RED (Ampliqon, Denmark). The reaction conditions were as follows: heating at 95 ° C for 10 minutes, heating at 95 ° C for 1 minute, bonding at 36 ° C for 1 minute, 72 ° C for 2 minutes, 45 cycles, and finally stretching at 72 ° C for 10 minutes. After the reaction, 10 μl of the PCR product was electrophoresed on a 2% agar colloid, and stained with EtBr staining solution for 10 minutes. After 20 minutes of decoloration, it was placed on a UV light box and photographed by an image processing system.
PCR反應總體積為20 μ卜内含50 ng DNA、0.4 μΜ核 酸引子和 10 μΐ 2Χ Taq DNA Polymerase Master Mix RED • (Ampliqon,丹麥)。反應條件為95°C加熱10分鐘,再以 95°C加熱1分鐘,36°C黏合1分鐘,72°C延展2分鐘, 進行45個循環,最後以72°C延展10分鐘。反應後取1〇 μι 之PCR產物以2%瓊脂膠體進行電泳分析,再以含EtBr染 • 色液染色1〇分鐘,退染20分鐘後,置於UV燈箱上觀察 . 並以影像處理系統拍照存檔。 二、性別特異性核苷酸片段之回收 將含有性別特異性片段PCR產物之瓊脂膠體切出, DNA經回收後,構築於pGEM-T easy載體(pGEM -T Easy φ Vector system,Promega,Madison,美國)上,送入 HIT DH5a 勝任細胞(competent cells) (HITTM Competent Cells,United Bioinformatica,Calgary,加拿大)轉形。於LB固體培養基 : (Bi〇n〇vas ’美國)上挑選單一白色菌株,以c〇iony_pCR確 ; 認所選殖的PCR產物長度是否正確。將確認帶有重組質體的 菌液完成核苷酸定序工作。定序所得的核酸序列以美國國家生 物技術資訊中心(National Center for Biotechnology Information, NCBI) BLAST (Basic Local Alignment Search Tool) 線上程式(http://www.ncbi.nlm.nih.gov/BLAST),選擇適當之 基因組資料庫(物種選擇雞Gallus gallus之genomic databases) 和核苷酸基因組資料庫(nucleotide databases)進行不同物種之 201031755 相似基因序列比對。 從大冠S具多態性之DNA指紋環帶中, OP臓進行麵試驗所得結果如圖1(A),找到 性之標記核賊片段,命名為_8,具麗bp,具有核^ 序列如SEQ ID ΝΟ:1。經逢機引子組〇pAT15進行試 驗所得結果如圖1(B),找到性別特異性之標記核賊片段 名為AT15 ’具1388bp,具有核苷酸序列如SEqIDN〇:2。利 用NCBI負料庫(動物別為㈤/⑽細/⑽之基因組資料庫及 和核苷酸為料庫)以BLAST進行比對,並未搜尋到與bb〇8 ❹ 或ATI 5性別特異片段完整相似度高的序列,顯示其為新發現 之序列。 實施例二大冠鷲性別鑑定之引子組之設計 選殖的DNA片段定序之後,以primer Designer軟體設 計適當的引子。根據性別特異性核苷酸片段BB〇8,得下列3 組引子組:The total volume of the PCR reaction was 20 μg containing 50 ng of DNA, 0.4 μΜ of nucleotide primer and 10 μΐ of 2Χ Taq DNA Polymerase Master Mix RED • (Ampliqon, Denmark). The reaction conditions were heating at 95 ° C for 10 minutes, heating at 95 ° C for 1 minute, bonding at 36 ° C for 1 minute, 72 ° C for 2 minutes, 45 cycles, and finally extending at 72 ° C for 10 minutes. After the reaction, 1 〇μι PCR product was electrophoresed on 2% agar colloid, and stained with EtBr dyeing solution for 1 , minutes, and after 20 minutes of decoloration, it was placed on a UV light box and observed with an image processing system. Archive. 2. Recovery of sex-specific nucleotide fragments The agar colloid containing the PCR product of the sex-specific fragment was excised, and the DNA was recovered and constructed on pGEM-T easy vector (pGEM-T Easy φ Vector system, Promega, Madison, In the United States, the HIT DH5a competent cells (HITTM Competent Cells, United Bioinformatica, Calgary, Canada) were transformed. A single white strain was selected on LB solid medium: (Bi〇n〇vas 'US) and confirmed by c〇iony_pCR; the length of the selected PCR product was correct. The bacterial solution with the recombinant plastid will be confirmed to complete the nucleotide sequencing work. The sequenced nucleic acid sequence is based on the National Center for Biotechnology Information (NCBI) BLAST (Basic Local Alignment Search Tool) online program (http://www.ncbi.nlm.nih.gov/BLAST). The appropriate genomic database (genomic databases of species selection chicken Gallus gallus) and nucleotide genomic databases were used to perform 201031755 similar gene sequence alignment of different species. From the polymorphic DNA fingerprinting band of Daguan S, the result of face test of OP臓 is shown in Fig. 1(A), and the labeled nuclear thief fragment is named _8, with rib bp, with nuclear sequence As SEQ ID ΝΟ: 1. The results obtained by the tempo-introduction group 〇pAT15 are shown in Fig. 1(B), and the sex-specific labeled nuclear thief fragment named AT15' has a 1388 bp nucleotide sequence such as SEqIDN〇:2. Using the NCBI negative library (animals (5) / (10) fine / (10) genomic database and nucleotides as a library) to compare with BLAST, did not find complete with bb〇8 或 or ATI 5 sex-specific fragments A sequence of high similarity, showing it as a newly discovered sequence. Example 2 Design of the primer set for sex identification of the big crown After the sequencing of the selected DNA fragment, the appropriate primer was designed with the primer Designer software. According to the sex-specific nucleotide fragment BB〇8, the following three groups of primers were obtained:
CseBB08-5aF/R CseBB08-5aF/ CseBB08-5bR CseBB08-7F/R F: CTGCAGCTGTTAATCCTCTCTC (SEQ ID NO: 3) R: TTACACTGACGGATTGCGTGGT ( SEQ ID NO: 4 ) F: CTGCAGCTGTTAATCCTCTCTC ( SEQ ID NO: 5 ) R: TTGGTGTTCCAAGTGGTGTTCC ( SEQ ID NO: 6 ) F: CTAGACTAATAGGTTGCGGTCC ( SEQ ID NO: 7 ) R: GGTGGCGATATGTATTCACTGC ( SEQ ID NO: 8 ) 根據性別特異性核苷酸月段AT15,得引子組:CseBB08-5aF/R CseBB08-5aF/ CseBB08-5bR CseBB08-7F/RF: CTGCAGCTGTTAATCCTCTCTC (SEQ ID NO: 3) R: TTACACTGACGGATTGCGTGGT (SEQ ID NO: 4) F: CTGCAGCTGTTAATCCTCTCTC (SEQ ID NO: 5) R: TTGGTGTTCCAAGTGGTGTTCC ( SEQ ID NO: 6) F: CTAGACTAATAGGTTGCGGTCC (SEQ ID NO: 7) R: GGTGGCGATATGTATTCACTGC (SEQ ID NO: 8) According to the sex-specific nucleotide segment AT15, the primer set:
CseAT15F/R F: GTAACGGATACTCTGACCAGGA ( SEQ ID NO: 9 ) R: GTGCACCAGTGTCTACTAGAGC ( SEQ ID NO: 10 ) 以上述引子組進行PCR反應。引子序列、黏合溫度以及 循環次數如錯誤!找不到參照來源》。 表3 性別鑑定所設計之引子序列及PCR條件 物 種 性別 特異 引子名稱 引子序列(5'— 黏合 循環 溫度 次數 201031755 片段 (°C) (次) 大 冠 繁 BB08 CseBB08-5aF/ R F: CTGCAGCTGTTAATCCTCTCTC R: TTACACTGACGGATTGCGTGGT 67 32 CseBB08-5aF/ CseBB08-5bR F: CTGCAGCTGTTAATCCTCTCTC R: TTGGTGTTCCAAGTGGTGTTCC 62 30 CseBB08-7F/R F: CTAGACTAATAGGTTGCGGTCC R: GGTGGCGATATGTATTCACTGC 66 35 ATI 5 CseAT15F/R F: GTAACGGATACTCTGACCAGGA R: GTGCACCAGTGTCTACTAGAGC 64 30 鳳頭蒼鷹 CseBB08-5aF/ Cs6BB08~5bR F: CTGCAGCTGTTAATCCTCTCTC R: TTGGTGTTCCAAGTGGTGTTCC 63 30 其PCR反應總體積為10μ1,内含l〇ng基因組DNA、 ❿ 引子各 0.3 μΜ 和 2X Taq DNA Polymerase Master Mix RED (Ampliqon)。PCR反應以熱循環反應器(T-Gradient tiiermocycler,Biometra’德國)進行,反應條件為95°C加熱5 分鐘,95°C加熱45秒,61-67°C黏合30秒,72°C延展1分 ' 鐘,進行30-35個循環,最後以72°C延展10分鐘。反應所 得產物進行1.5%瓊脂膠體電泳分析,再以含EtBr染色液染 色10分鐘’退染20分鐘後,置於UV燈箱上觀察並以影 像處理系統拍照存標,用以鑑定性別。 φ 實施例三禽類性別鑑定 一、 試驗動物 動物DNA樣本、血液樣本或組織樣本分別取自台北市立 . 動物園(TaiPei z〇〇)的大冠鷲12隻及鳳頭蒼鷹3隻,以及 - 特有生物研九保育中心(Endemic Species Research Institute) 的大冠鷲29隻及鳳頭蒼鷹5隻。其中大冠鷲2〇隻以内視 鏡檢測性別,而大冠鷲i隻及鳳頭蒼鷹2隻以其他方法(如 屍體解剖或曾有下蛋的情料絲)欺性別。而在有以内視 ,檢測性別的大冠鷲巾’有丨3 4已知其年齡(9隻成鳥和4 隻亞成鳥)。 二、 PCR性別鑑定 12 201031755 以試驗動物血液為樣本,進行基因組DNA萃取,以黃魚 鸮、鳳頭蒼鷹與草鸮基因組DNA為模板,以實施例二所得引 子組及方法進行溫度梯度(gradient)PCRt>pcR反應總體積為 10 μ卜内含10 ng基因組DNA、引子各〇.3 μΜ和2X Taq DNA Polymerase Master Mix RED (Ampliqon,丹麥)。PCR 反 應以熱循環反應器(T-Gradient thermocycler, Biome仕a,德國) 進行反應條件為95 C加熱5分鐘,95°C加熱45秒,61、 -- 63、65及67°C溫度梯度黏合30秒,72°C延展1分鐘, 進行30-35個循環,最後以72t:延展1〇分鐘。反應所得 產物進行1.5%瓊脂膠體電泳分析,再以含EtBr染色液染色 • 10分鐘,退染20分鐘後,置於UV燈箱上觀察並以影像處 理系統拍照存槽。 ⑴大冠鷲之性別鑑定·· CseBB08-5aF/R 以CseBB08_5aF和CseBB08-5aR引子組增幅大冠鷲基因組 DNA ’ PCR產物進行ι.5%瓊脂膠體電泳分析結果如圖2所 • 示,雄大甩鷲沒有擴增出任何片段,而雌大冠鷲可擴增出553 bp之片段,具有核苷酸序列如SEQIDN〇:u,為大冠鷲之雌 性性別標記片段,性別鑑定準確率達100% (41隻/41隻)。CseAT15F/R F: GTAACGGATACTCTGACCAGGA (SEQ ID NO: 9) R: GTGCACCAGTGTCTACTAGAGC (SEQ ID NO: 10) The PCR reaction was carried out using the above primer set. The primer sequence, bonding temperature, and number of cycles are as wrong! Reference source not found. Table 3 Primer sequence designed by sex identification and PCR conditions Species gender-specific primer name primer sequence (5'—adhesion cycle temperature number 201031755 fragment (°C) (times) Daguanfan BB08 CseBB08-5aF/ RF: CTGCAGCTGTTAATCCTCTCTC R: TTACACTGACGGATTGCGTGGT 67 32 CseBB08-5aF/ CseBB08-5bR F: CTGCAGCTGTTAATCCTCTCTC R: TTGGTGTTCCAAGTGGTGTTCC 62 30 CseBB08-7F/RF: CTAGACTAATAGGTTGCGGTCC R: GGTGGCGATATGTATTCACTGC 66 35 ATI 5 CseAT15F/RF: GTAACGGATACTCTGACCAGGA R: GTGCACCAGTGTCTACTAGAGC 64 30 Crested Goshawk CseBB08-5aF/ Cs6BB08 ~5bR F: CTGCAGCTGTTAATCCTCTCTC R: TTGGTGTTCCAAGTGGTGTTCC 63 30 The total volume of PCR reaction is 10μ1, containing l〇ng genomic DNA, 0.3 μΜ each of ❿ primer and 2X Taq DNA Polymerase Master Mix RED (Ampliqon). PCR reaction with thermal cycle reactor (T-Gradient tiiermocycler, Biometra's Germany), the reaction conditions were 95 ° C heating for 5 minutes, 95 ° C heating for 45 seconds, 61-67 ° C bonding for 30 seconds, 72 ° C extended 1 minute 'clock, for 30- 35 cycles, and finally extended at 72 ° C for 10 minutes. .5% agar colloidal electrophoresis analysis, and then stained with EtBr staining solution for 10 minutes' after 20 minutes of de-staining, placed on a UV light box and photographed with an image processing system to identify the sex. φ Example 3 Poultry sex Identification 1. Test animal DNA samples, blood samples or tissue samples were taken from Taipei City. The zoo (TaiPei z〇〇) has 12 large crowns and 3 crested goshawks, and - the special biological research and nine conservation center ( The Endemic Species Research Institute has 29 large crowns and 5 crested goshawks. Among them, the big crown 鹫 2 〇 only uses endoscopy to detect sex, while the big crown 鹫 i and the phoenix goshawk 2 are by other methods (such as The autopsy or the sensation of the egg has been deceived. In the case of internal vision, the sex of the big crown 鹫 ' 丨 4 4 4 4 4 4 已知 已知 已知 已知 。 。 。 。 。 。 。 。 。 。 。 。 。 。 。 。 。 9 9 9 。 9 Second, PCR sex identification 12 201031755 Taking the blood of the test animal as a sample, genomic DNA extraction, using the genomic DNA of the yellow carp, the crested goshawk and the grasshopper as a template, using the primer set and method obtained in the second example to carry out the temperature gradient (gradient) The PCRt>pcR reaction has a total volume of 10 μg containing 10 ng of genomic DNA, primers of each 〇.3 μΜ and 2X Taq DNA Polymerase Master Mix RED (Ampliqon, Denmark). The PCR reaction was carried out in a thermal cycle reactor (T-Gradient thermocycler, Biome A, Germany) under the reaction conditions of 95 C for 5 minutes, 95 ° C for 45 seconds, and 61, -63, 65 and 67 °C temperature gradient bonding. 30 seconds, 72 ° C extended for 1 minute, 30-35 cycles, and finally 72t: extended for 1 minute. The product obtained by the reaction was subjected to 1.5% agar colloidal electrophoresis analysis, and then stained with EtBr staining solution for 10 minutes, and after 20 minutes of defection, it was placed on a UV light box and photographed by an image processing system. (1) Sex identification of the big crown ··· CseBB08-5aF/R The genomic DNA analysis of the genomic DNA of the large scorpion genomic DNA of the CseBB08_5aF and CseBB08-5aR primers was performed as shown in Fig. 2;鹫 does not amplify any fragment, and the female cockroach can amplify a 553 bp fragment with a nucleotide sequence such as SEQ IDN〇:u, which is a female sex marker fragment of the big crown, and the sex identification accuracy is 100%. (41/41).
(2) 大冠鷲之性別鑑定:CseBB〇8_5aF和CseBB〇8_5bR ❹ 以CseBB08_5aF和CseBB08-5bR引子組增幅大冠鷲基因組 DNA,PCR產物電泳分析結果如圖3所示,雄大冠鷲沒有擴 . ,出任何片段,而雌大冠鷲可擴增出895bp之片段,具有核 • 苷酸序列如SEQ ID N0:12,為大冠鷲之雌性性別標記片段。 -- 性別鑑定準確率亦達100% (41隻/41隻)。(2) Gender identification of the big crown: CseBB〇8_5aF and CseBB〇8_5bR 鹫 The genomic DNA of the large crown was amplified by the CseBB08_5aF and CseBB08-5bR primers. The electrophoresis analysis results of the PCR products are shown in Fig. 3, and the male crown was not expanded. Any fragment is obtained, and the female large crown can be amplified into a 895 bp fragment having a nucleotide sequence such as SEQ ID NO: 12, which is a female sex marker fragment of the large crown. -- The accuracy of gender identification is also 100% (41/41).
(3) 大冠鷲之性別鑑定:CseBB08-7F和CseBB08-7R =cseBB08_7F和CseBB08_7R引子組增幅大冠鷲基因組 ,PCR產物電泳分析結果如圖4所示,雌大冠鷲可擴增 ,193及543 bp二個片段,而雄大冠鷲擴增出543 bp片 奴。其中同時出現於雌性及雄性大冠鷲中之543 bp片段,且 有核苷酸序列如SEQ ID N0:13,可作為内在控制片段;僅/出 13 201031755 現於雌性大冠鷲中之193 bp片段,具有核苷酸序列如SEQ ID N〇:14,可作為大冠鷲之之雌性性別標記片段。性別鑑定準確 率達100% (41隻Ml隻)。 (4)大冠鷲之性別鑑定:CseAT15F/R 以CseAT 15F和CseAT 15R引子組增幅大冠鷲基因組 PCR產物電泳分析結果如圖5所示,雌大冠鷲可擴增出147 及734 bp二個片段,而雄大冠鷲擴增出I” bp片段。其中 同時出現於雌性及雄性大冠鷲中之147 bp片段,具有核苷酸 序列如SEQ ID NO:15 ’可作為内在控制片段;僅出現於雌性 大冠鷲中之734 3卩片段,具有核苷酸序列如犯〇〇)从):16,(3) Gender identification of the big crown: CseBB08-7F and CseBB08-7R = cseBB08_7F and CseBB08_7R introduced the genome of the large crown, the electrophoresis analysis results of PCR products are shown in Figure 4, the female crown can be amplified, 193 and Two fragments of 543 bp, while the male cockroach cockroach amplified 543 bp tablets. The 543 bp fragment which appears in both female and male large crowns, and has a nucleotide sequence such as SEQ ID NO: 13, which can be used as an intrinsic control fragment; only / out 13 201031755 is now 193 bp in female large crown A fragment having a nucleotide sequence such as SEQ ID N: 14 can be used as a female sex marker fragment of the Great Crown. The accuracy of gender identification was 100% (41 Ml only). (4) Sex identification of the big crown :: CseAT15F/R The CseAT 15F and CseAT 15R primers were used to increase the amplitude of the genomic PCR product. The results of electrophoresis analysis are shown in Figure 5. The female crown can be amplified by 147 and 734 bp. Fragments, while the male cockroach cockroach amplifies the I" bp fragment, which is a 147 bp fragment that appears in both female and male large crowns, with a nucleotide sequence such as SEQ ID NO: 15 'as an intrinsic control fragment; The 734 3卩 fragment that appears in the female large crown has a nucleotide sequence such as 〇〇)): 16,
可作為大冠鷲之雌性性別標記片段。性別鑑定準確率達1〇〇〇/〇 (41 隻/41 隻)。 (5)鳳頭蒼鷹之性別鑑定 以鳳頭蒼鷹血液為樣本,進行基因組DNA萃取,之後以引子 組CseBB08-7F/R進行PCR反應,反應條件為95。(:加熱5分 鐘’ 95 C加熱45秒,63°C黏合30秒,72°C延展1分鐘, 進2 30個循環,最後以72t:延展10分鐘。反應所得產物 進行1.5%瓊脂膠體電泳分析,結果如圖6所示,雄鳳頭蒼鷹 沒有擴增出任何片段,而雌鳳頭蒼鷹可擴增出895 bp片段·, =核練序列如SEQ ID N〇:16,可作為鳳頭蒼鷹之雌性性 別記片段。性別鑑定準確率達1〇〇% (8隻/8隻)。 【圖式簡單說明】 又又 =為大冠s性職異性之核賊片段,其中圖1(A)為大冠驚 二、、且DNA經逢機引子組〇pbb〇8進行RAPD試驗所得,呈 性之核苦酸片段1241bp;圓1⑻為大冠鷲基因^ ,2,以CseB離5aF和⑽娜祕引子组增幅大冠 酸片且段^3泳顧,其㈣性具性職級之核ί 14 201031755 圖3為以CseBB08-5aF和CseBB08-5bR弓丨子組增幅大冠驚基 因組DNA之電泳膠圖,其中雌性大冠鷲具性別特異性之核苷 酸片段895bp。 、 圖4為以CseBB08-7F和CseBB08-7R引子組增幅大冠驚基因 組DNA之電泳膠圖’其中雌性大冠鷲具性別特異性之核苦酸 片段193bp ;並含内在控制片段543bp。 、It can be used as a female sex marker fragment of the Great Crown. The accuracy of gender identification was 1〇〇〇/〇 (41/41). (5) Sex identification of the Crested Goshawk The genomic DNA was extracted from the blood of the Crested Goshawk, and the PCR reaction was carried out with the introduction group CseBB08-7F/R. The reaction condition was 95. (: heating for 5 minutes' 95 C heating for 45 seconds, 63 °C for 30 seconds, 72 °C for 1 minute, for 2 30 cycles, and finally for 72t: for 10 minutes. The reaction product was subjected to 1.5% agar colloidal electrophoresis analysis. As shown in Fig. 6, the male eagle eagle does not amplify any fragments, while the female eagle eagle can amplify a 895 bp fragment, and the nucleus sequence is SEQ ID N〇: 16, which can be used as a phoenix. The female sex score of the goshawk is 1. The accuracy rate of gender identification is 1〇〇% (8/8). [Simple description of the figure] Again = the nuclear thief fragment of the big crown s sex and sex, Figure 1 (A) for the big crown stunned, and the DNA was obtained by RAPD test on the 〇pbb〇8 of the machine introduction group, the representative nucleotide fragment was 1241 bp; the round 1 (8) was the big crown 鹫 gene ^, 2, and the CseB was 5aF. And (10) Na Mi's introduction group increased the Daguan acid tablets and paragraph ^3 swimming, its (four) sexual rank nuclear ί 14 201031755 Figure 3 is the CseBB08-5aF and CseBB08-5bR bow scorpion group increase the large crown stimuli genomic DNA The electrophoresis gel map, in which the female large crown has a gender-specific nucleotide fragment of 895 bp. Figure 4 shows the increase in the CseBB08-7F and CseBB08-7R primers. The electrophoresis gel of the genomic DNA of the genomic DNA of the female genus is 193 bp with a gender-specific fragment and contains 543 bp of the intrinsic control fragment.
圖5以CseAT 15F和CseAT 15R引子組增幅大冠鷲基因組DNA - 之電泳膠圖,其中雌性大冠鷲具性別特異性之核苷酸片段 , 734bp ;並含内在控制片段147bp。 圖6為以CseBB08-5aF和CseBB08-5bR引子組增幅鳳頭蒼鹰 ❹ 基因組DNA之電泳膠圖,其中雌性鳳頭蒼鷹具性別特異性之 核苷酸片段895bp。 八 ’、 【主要元件符號說明】 無Figure 5 shows the electrophoresis map of the genomic DNA of the large crown carp genomic DNA with the CseAT 15F and CseAT 15R primers. The female large crown has a sex-specific nucleotide fragment of 734 bp and contains an intrinsic control fragment of 147 bp. Figure 6 is an electrophoresis gel of genomic DNA of Crested Goshawk eagle with CseBB08-5aF and CseBB08-5bR primers. The female Crested eagle has a sex-specific nucleotide fragment of 895 bp. Eight ‘, 【Main component symbol description】 None
15 201031755 序列表 <110>國立臺灣大學;台北市立動物園 <120>鑑別大冠鷲與鳳頭蒼鷹性別之DNA標記及引子組 <140> <141> <160〉1915 201031755 Sequence Listing <110> National Taiwan University; Taipei City Zoo <120> Identification of DNA markers and primers for the gender of the Great Crown and the Crested Goshawk <140><141><160>19
<210>1 <211>1241 <212>DNA <213〉大冠鷲 <400> 1<210>1 <211>1241 <212>DNA <213>Great Crown <400> 1
TCGTCGAAGGTCGTCGAAGG
GGCATACAGCGGCATACAGC
ATCAAAAGCAATCAAAAGCA
GCAGGCCAATGCAGGCCAAT
TCAATACAAATCAATACAAA
AGTATTTACAAGTATTTACA
GTACAAGACTGTACAAGACT
AGGAGTGTCGAGGAGTGTCG
CAGCTAATATCAGCTAATAT
ACAGATTGGAACAGATTGGA
ATGTTGGGTTATGTTGGGTT
ATAAGGCACAATAAGGCACA
TCTGATATCATCTGATATCA
TACGTCATTCTACGTCATTC
GTTGCGGTCCGTTGCGGTCC
GTAGTTAATAGTAGTTAATA
CATGTTTTGTCATGTTTTGT
GAATATTCCAGAATATTCCA
CAATGTTGTACAATGTTGTA
CATCCCATTCCATCCCATTC
TGTGGAATATTGTGGAATAT
AGTGGAACACAGTGGAACAC
GTGAGGAGGTGTGAGGAGGT
TATGTTGATTTATGTTGATT
GTATCCACAGGTATCCACAG
AGGAAATAGTAGGAAATAGT
CGTTACCTACCGTTACCTAC
CTTAGCATAGCTTAGCATAG
GAAACACATTGAAACACATT
AGGCAGATGAAGGCAGATGA
TTTTGATCTCTTTTGATCTC
ACAAAGCACGACAAAGCACG
TCTCCTTCCATCTCCTTCCA
CACTCTGGGTCACTCTGGGT
GAGCTATGGCGAGCTATGGC
CGCGATACCACGCGATACCA
GGTATTTGTCGGTATTTGTC
ACAGAGGATGACAGAGGATG
TCAGGGGTTATCAGGGGTTA
CACCACGCAACACCACGCAA
TTTTGGGAGATTTTGGGAGA
ACTGGAGGTGACTGGAGGTG
GCTGTTTAACGCTGTTTAAC
AAGTTTTAGTAAGTTTTAGT
ATTCTTTCAAATTCTTTCAA
CCAATCTATCCCAATCTATC
CACTTGGAACCACTTGGAAC
CCGTATTGATCCGTATTGAT
AGCATACTTGAGCATACTTG
CAGTGAATACCAGTGAATAC
CCACCGGCAACCACCGGCAA
TCAGAAAGAATCAGAAAGAA
TATAATTCTGTATAATTCTG
GTCAAAAGATGTCAAAAGAT
GTTAGTTAAAGTTAGTTAAA
ATGGAACTGTATGGAACTGT
ATGAGCCAACATGAGCCAAC
ATAATACATAATAATACATA
TTGATAACCTTTGATAACCT
TTGTGCTTTTTTGTGCTTTT
ATAACACCATATAACACCAT
AAAGATACCTAAAGATACCT
TAAAATAAGATAAAATAAGA
TTATATGAACTTATATGAAC
TCCGTCAGTGTCCGTCAGTG
AATACCATCTAATACCATCT
TTGTAATATGTTGTAATATG
AAAAAAACTGAAAAAAACTG
ACTGGTTAGCACTGGTTAGC
TC7VAGCCATTTC7VAGCCATT
CCTAGCCCTTCCTAGCCCTT
ACCAAGTGTTACCAAGTGTT
GAATGAGTTGGAATGAGTTG
GTGGGTTTAGGTGGGTTTAG
ATATCGCCACATATCGCCAC
TTGATTTTGTTTGATTTTGT
TAGCAATGAGTAGCAATGAG
TAATACAGCTTAATACAGCT
CTGCAGCTGTCTGCAGCTGT
GTACAGGCTAGTACAGGCTA
ATCCAGGGCAATCCAGGGCA
CTGTGATAGGCTGTGATAGG
TGCCATTGCTTGCCATTGCT
GATGTGGGGTGATGTGGGGT
TCAGACTGAATCAGACTGAA
TCCAATGCTATCCAATGCTA
GAAATACAAGGAAATACAAG
GAAGTTGGGGGAAGTTGGGG
CTTCATGCCTCTTCATGCCT
TAAACAATTCTAAACAATTC
GGAAAAATTTGGAAAAATTT
ATCATAGGGTATCATAGGGT
CTTTAGTAAGCTTTAGTAAG
TTTTTTAATTTTTTTTAATT
AGCTTGGGGAAGCTTGGGGA
GAGCCCAATCGAGCCCAATC
CCTTGGTCACCCTTGGTCAC
TTCTAGTGCTTTCTAGTGCT
CAAAAAACAGCAAAAAACAG
CCCTTCGACGCCCTTCGACG
AATGCTCCTTAATGCTCCTT
GAACATTAATGAACATTAAT
ACTGGGGTTGACTGGGGTTG
TAATCCTCTCTAATCCTCTC
ACCAAATCTAACCAAATCTA
TGTGCCTGTATGTGCCTGTA
AGAGGAAAACAGAGGAAAAC
CCAGCTCCTTCCAGCTCCTT
AATTGCCCACAATTGCCCAC
CTTCAATTTGCTTCAATTTG
TCTCCTCTAGTCTCCTCTAG
AACTCGAGAAAACTCGAGAA
TACAGAACCATACAGAACCA
AGACTAATAGAGACTAATAG
CATTTCCCCTCATTTCCCCT
CAATCCTCACCAATCCTCAC
GTTTGATTATGTTTGATTAT
ATGTGAACTCATGTGAACTC
GTTCCTTCAAGTTCCTTCAA
TGGTAGGCATTGGTAGGCAT
AAGGGCTCCAAAGGGCTCCA
TTTGTATTTGTTTGTATTTG
TCAATTGTGTTCAATTGTGT
TCCTGACACTTCCTGACACT
A 50 100 150 200 250 300 350 400 450 500 550 600 651 700 750 800 850 900 950 1000 1050 1100 1150 1200 1241 <210>2 <211>1388 <212>DNA <213>大冠鷲 <400〉2 1 201031755A 50 100 150 200 250 300 350 400 450 500 550 600 651 700 750 800 850 900 950 1000 1050 1100 1150 1200 1241 <210>2 <211>1388 <212>DNA <213> Great Crown < 400>2 1 201031755
TGACGCACGG GTACGGGAAT TGCGAGAAAA AGCAATCGGA AAAGACGATT 50 CTTCTTGGAA AAATGCCGCT CCAGTTTCCC GTGAGCAGTC CCCCAGACGC 100 AGTAGAAGGG CTGATCTCAT TTCTGATCCT CTTGAAGGGA CTTGTGATTC 150 ACGTTTGCGA AAAGTGAGTA ACGGATACTC TGACCAGGAT TAGAGGGGCC 200 CTGCCTCCAG CCAGGTGGAG GAAAGGGACA ACCGGGTCTA CTGGACAGTG 250 TGGATTCGAT GGCCTGGCAC ATCACACTGT CCTGGTTTCA GCTGGGATAG 300 AGTTAATTGT CTTCCTAGTA GCTGGTATAG TGCTATGTTT TGAGTTCAGT 350 ATGAGAAGAA TGTTGATAAC ACTGATGTTT TCAGTTGTTG CTAAGGAATG 400 TTTAGTCTAA AGTCAAGGAT TTTTCAGCTT CTCATGCCCA GCCAGCAAGA 450 AAGCTGGAGG GGCACAAGAA GTTGGCACAG GACAGAGCCA GGGCAGCAGA 500 CCCAAAGAGG CCAACGGGGT ATTCCATACC ATGTGATGTC ATGTCTTGTA 550 TATACACTGG GGGGAGTGGG GGTGGGGGGA TTGCCGCTCA GGGACTAACT 600 GGACATCGGT CGGCGGGTAG TGAGCAATTG CATTGTGCAT CACTTGCATA 650 TTCCAATCCT TTTATTATTA CTGTTGTCAT TTTATTAGTG TTACCATTAT 700 CATTATTAGT TTCTTCCTTT CTGTACTGTT AAACCGTTCC TATCTCAACC 750 CACGAGTTTT ACTTCTTTTC CCGATTCTCT CCCCCATCCC ACTGGGTGGC 800 GGGGAAGTGA GTGAGCAGCT GCGAGGTGCT TAGTTGCTGG CTGGGGTTAA 850 ACCATGACAC AGACCCACAG GAATATAAGG CTCTAGTAGA CACTGGTGCA 900 CAATGTACCC TAATGCCATC AAGTTATAAA GGGGCAGAAC CCATCTGTAT 950 CTCTGGTGTG ACAGGGGGAT CCCAAGAGCT AACTGTATTG GAAGCTGAAG 1000 TGAGTCTAAC TGGGAATGAG TGGCAGAAAC ACCCCATTGT GACTGGCCCA 1050 GAGGCCCCAT GCATCCTTGG CATAGACTAC CTCAGGAGAG GGTATTTTAA 1100 GGACCCAAAG GGGTACTGTT GGGCCTTTGG TATAGCTGCA TTGGAGACGG 1150 AGGAGATTGA ACAGCTGTCC GCCTTGCCTG GCCTCTCTGA GGACCCTTCA 1200 GTTGTGGGGT TGCTGAGGGT TGAAGAACAA CAGGTGCCAA TTGCTACCAC 1250 AATGGTGCAC TGGTGGCAAT ATCGCACCAA CTGAGACTCC CTGATTCCCA 1300 TCCACAAGTT GATTCGCCAA CTGGAGAGCC AAGGAGTGAT CAGCAAGACT 1350 CACTCACCCT TTAATAGTCT CATATGGCCC GTGCGTCA 1388 <210>3 <211>22 <212〉DNA <213>人工合成 <400> 3 22 5, CTGCAGCTGT TAATCCTCTC TC 3, <210>4 <211〉22 <212> DNA <213>人工合成 <400〉4 5, TTACACTGAC GGATTGCGTG GT 3’ 22TGACGCACGG GTACGGGAAT TGCGAGAAAA AGCAATCGGA AAAGACGATT 50 CTTCTTGGAA AAATGCCGCT CCAGTTTCCC GTGAGCAGTC CCCCAGACGC 100 AGTAGAAGGG CTGATCTCAT TTCTGATCCT CTTGAAGGGA CTTGTGATTC 150 ACGTTTGCGA AAAGTGAGTA ACGGATACTC TGACCAGGAT TAGAGGGGCC 200 CTGCCTCCAG CCAGGTGGAG GAAAGGGACA ACCGGGTCTA CTGGACAGTG 250 TGGATTCGAT GGCCTGGCAC ATCACACTGT CCTGGTTTCA GCTGGGATAG 300 AGTTAATTGT CTTCCTAGTA GCTGGTATAG TGCTATGTTT TGAGTTCAGT 350 ATGAGAAGAA TGTTGATAAC ACTGATGTTT TCAGTTGTTG CTAAGGAATG 400 TTTAGTCTAA AGTCAAGGAT TTTTCAGCTT CTCATGCCCA GCCAGCAAGA 450 AAGCTGGAGG GGCACAAGAA GTTGGCACAG GACAGAGCCA GGGCAGCAGA 500 CCCAAAGAGG CCAACGGGGT ATTCCATACC ATGTGATGTC ATGTCTTGTA 550 TATACACTGG GGGGAGTGGG GGTGGGGGGA TTGCCGCTCA GGGACTAACT 600 GGACATCGGT CGGCGGGTAG TGAGCAATTG CATTGTGCAT CACTTGCATA 650 TTCCAATCCT TTTATTATTA CTGTTGTCAT TTTATTAGTG TTACCATTAT 700 CATTATTAGT TTCTTCCTTT CTGTACTGTT AAACCGTTCC TATCTCAACC 750 CACGAGTTTT ACTTCTTTTC CCGATTCTCT CCCCCATCCC ACTGGGTGGC 800 GGGGAAGTGA GTGAGCAGCT GCGAGGTGCT TAGTTGCTGG CTGGGGTTAA 85 0 ACCATGACAC AGACCCACAG GAATATAAGG CTCTAGTAGA CACTGGTGCA 900 CAATGTACCC TAATGCCATC AAGTTATAAA GGGGCAGAAC CCATCTGTAT 950 CTCTGGTGTG ACAGGGGGAT CCCAAGAGCT AACTGTATTG GAAGCTGAAG 1000 TGAGTCTAAC TGGGAATGAG TGGCAGAAAC ACCCCATTGT GACTGGCCCA 1050 GAGGCCCCAT GCATCCTTGG CATAGACTAC CTCAGGAGAG GGTATTTTAA 1100 GGACCCAAAG GGGTACTGTT GGGCCTTTGG TATAGCTGCA TTGGAGACGG 1150 AGGAGATTGA ACAGCTGTCC GCCTTGCCTG GCCTCTCTGA GGACCCTTCA 1200 GTTGTGGGGT TGCTGAGGGT TGAAGAACAA CAGGTGCCAA TTGCTACCAC 1250 AATGGTGCAC TGGTGGCAAT ATCGCACCAA CTGAGACTCC CTGATTCCCA 1300 TCCACAAGTT GATTCGCCAA CTGGAGAGCC AAGGAGTGAT CAGCAAGACT 1350 CACTCACCCT TTAATAGTCT CATATGGCCC GTGCGTCA 1388 <210>3 <211>22 <212>DNA <213> Synthetic <400> 3 22 5, CTGCAGCTGT TAATCCTCTC TC 3, <210>4 <211>22 <212> DNA <213> Synthetic <400>4 5, TTACACTGAC GGATTGCGTG GT 3' 22
<210 5 <211〉22 <212>DNA 2 201031755 <213>人工合成 <400> 5 55 CTGCAGCTGT TAATCCTCTC TC 35 22 <210 6 <211〉22 <212〉DNA <213>人工合成 <400> 6 5, TTGGTGTTCC AAGTGGTGTT CC 3’ 22<210 5 <211>22 <212>DNA 2 201031755 <213> Synthetic <400> 5 55 CTGCAGCTGT TAATCCTCTC TC 35 22 <210 6 <211>22 <212>DNA <213>; Synthetic <400> 6 5, TTGGTGTTCC AAGTGGTGTT CC 3' 22
<210>7 <211〉22 <212〉DNA <213>人工合成 <400> 7 5’ CTAGACTAAT AGGTTGCGGT CC 3’ 22 <210〉8 <211>22 <212〉DNA <213>人工合成 <400〉8 5,: GGTGGCGATA TGTATTCACT GC 3, 22<210>7 <211>22 <212>DNA<213> Synthetic <400> 7 5' CTAGACTAAT AGGTTGCGGT CC 3' 22 <210>8 <211>22 <212>DNA <;213> Synthetic <400>8 5,: GGTGGCGATA TGTATTCACT GC 3, 22
<210>9 <211〉22 <212〉DNA <213>人工合成 <400> 9 5, GTAACGGATA CTCTGACCAG GA 3, 22 <210> 10 <211>22 <212>DNA <213>人工合成 <400> 10 5, GTGCACCAGT GTCTACTAGA GC 3’ 22 3 201031755 <21011 <211>553 <212>DNA <213>大冠鷲<210>9 <211>22 <212>DNA<213> Synthetic <400> 9 5, GTAACGGATA CTCTGACCAG GA 3, 22 <210> 10 <211>22 <212>DNA <;213>Synthesis<400> 10 5, GTGCACCAGT GTCTACTAGA GC 3' 22 3 201031755 <21011 <211>553 <212>DNA <213>
<400〉5<400>5
CTGCAGCTGTCTGCAGCTGT
GTACAGGCTAGTACAGGCTA
ATCCAGGGCAATCCAGGGCA
CTGTGATAGGCTGTGATAGG
TGCCATTGCTTGCCATTGCT
GATGTGGGGTGATGTGGGGT
TCAGACTGAATCAGACTGAA
TCCAATGCTATCCAATGCTA
GAAATACAAGGAAATACAAG
GAAGTTGGGGGAAGTTGGGG
CTTCATGCCTCTTCATGCCT
TAATAA
TAATCCTCTCTAATCCTCTC
ACCAAATCTAACCAAATCTA
TGTGCCTGTATGTGCCTGTA
AGAGGAAAACAGAGGAAAAC
CCAGCTCCTTCCAGCTCCTT
AATTGCCCACAATTGCCCAC
CTTCAATTTGCTTCAATTTG
TCTCCTCTAGTCTCCTCTAG
AACTCGAGAAAACTCGAGAA
TACAGAACCATACAGAACCA
AGACTAATAGAGACTAATAG
TCAATACAAATCAATACAAA
AGTATTTACAAGTATTTACA
GTACAAGACTGTACAAGACT
AGGAGTGTCGAGGAGTGTCG
CAGCTAATATCAGCTAATAT
ACAGATTGGAACAGATTGGA
ATGTTGGGTTATGTTGGGTT
ATAAGGCACAATAAGGCACA
TCTGATATCATCTGATATCA
TACGTCATTCTACGTCATTC
GTTGCGGTCCGTTGCGGTCC
AGGCAGATGAAGGCAGATGA
TTTTGATCTCTTTTGATCTC
ACAAAGCACGACAAAGCACG
TCTCCTTCCATCTCCTTCCA
CACTCTGGGTCACTCTGGGT
GAGCTATGGCGAGCTATGGC
CGCGATACCACGCGATACCA
GGTATTTGTCGGTATTTGTC
ACAGAGGATGACAGAGGATG
TCAGGGGTTATCAGGGGTTA
CACCACGCAACACCACGCAA
GTTAGTTAAAGTTAGTTAAA
ATGGAACTGTATGGAACTGT
ATGAGCCAACATGAGCCAAC
ATAATACATAATAATACATA
TTGATAACCTTTGATAACCT
TTGTGCTTTTTTGTGCTTTT
ATAACACCATATAACACCAT
AAAGATACCTAAAGATACCT
TAAAATAAGATAAAATAAGA
TTATATGAACTTATATGAAC
TCCGTCAGTG 50 100 150 200 250 300 350 400 450 500 550 553 <210> 12 <211>895 <212〉DNA <213>大冠鷲TCCGTCAGTG 50 100 150 200 250 300 350 400 450 500 550 553 <210> 12 <211>895 <212>DNA <213> Great Crown
<400〉12<400>12
CTGCAGCTGTCTGCAGCTGT
GTACAGGCTAGTACAGGCTA
ATCCAGGGCAATCCAGGGCA
CTGTGATAGGCTGTGATAGG
TGCCATTGCTTGCCATTGCT
GATGTGGGGTGATGTGGGGT
TCAGACTGAATCAGACTGAA
TCCAATGCTATCCAATGCTA
GAAATACAAGGAAATACAAG
GAAGTTGGGGGAAGTTGGGG
CTTCATGCCTCTTCATGCCT
TAAACAATTCTAAACAATTC
GGAAAAATTTGGAAAAATTT
ATCATAGGGTATCATAGGGT
CTTTAGTAAG ΤΤΤΤΤΤΆΑΤΤCTTTAGTAAG ΤΤΤΤΤΤΆΑΤΤ
AGCTTGGGGAAGCTTGGGGA
GAGCCCAATCGAGCCCAATC
TAATCCTCTCTAATCCTCTC
ACCAAATCTAACCAAATCTA
TGTGCCTGTATGTGCCTGTA
AGAGGAAAACAGAGGAAAAC
CCAGCTCCTTCCAGCTCCTT
AATTGCCCACAATTGCCCAC
CTTCAATTTGCTTCAATTTG
TCTCCTCTAGTCTCCTCTAG
AACTCGAGAAAACTCGAGAA
TACAGAACCATACAGAACCA
AGACTAATAGAGACTAATAG
CATTTCCCCTCATTTCCCCT
CAATCCTCACCAATCCTCAC
GTTTGATTATGTTTGATTAT
ATGTGAACTCATGTGAACTC
GTTCCTTCAAGTTCCTTCAA
TGGTAGGCATTGGTAGGCAT
AAGGGCTCCAAAGGGCTCCA
TCAATACAAATCAATACAAA
AGTATTTACAAGTATTTACA
GTACAAGACTGTACAAGACT
AGGAGTGTCGAGGAGTGTCG
CAGCTAATATCAGCTAATAT
ACAGATTGGAACAGATTGGA
ATGTTGGGTTATGTTGGGTT
ATAAGGCACAATAAGGCACA
TCTGATATCATCTGATATCA
TACGTCATTCTACGTCATTC
GTTGCGGTCCGTTGCGGTCC
GTAGTTAATAGTAGTTAATA
CATGTTTTGTCATGTTTTGT
GAATATTCCAGAATATTCCA
CAATGTTGTACAATGTTGTA
CATCCCATTCCATCCCATTC
TGTGGAATATTGTGGAATAT
AGTGGAACACAGTGGAACAC
AGGCAGATGAAGGCAGATGA
TTTTGATCTCTTTTGATCTC
ACAAAGCACGACAAAGCACG
TCTCCTTCCATCTCCTTCCA
CACTCTGGGTCACTCTGGGT
GAGCTATGGCGAGCTATGGC
CGCGATACCACGCGATACCA
GGTATTTGTCGGTATTTGTC
ACAGAGGATGACAGAGGATG
TCAGGGGTTATCAGGGGTTA
CACCACGCAACACCACGCAA
TTTTGGGAGATTTTGGGAGA
ACTGGAGGTGACTGGAGGTG
GCTGTTTAACGCTGTTTAAC
AAGTTTTAGTAAGTTTTAGT
ATTCTTTCAAATTCTTTCAA
CCAATCTATCCCAATCTATC
CACTTGGAACCACTTGGAAC
GTTAGTTAAAGTTAGTTAAA
ATGGAACTGTATGGAACTGT
ATGAGCCAACATGAGCCAAC
ATAATACATAATAATACATA
TTGATAACCTTTGATAACCT
TTGTGCTTTTTTGTGCTTTT
ATAACACCATATAACACCAT
AAAGATACCTAAAGATACCT
TAAAATAAGATAAAATAAGA
TTATATGAACTTATATGAAC
TCCGTCAGTGTCCGTCAGTG
AATACCATCTAATACCATCT
TTGTAATATGTTGTAATATG
AAAAAAACTGAAAAAAACTG
ACTGGTTAGCACTGGTTAGC
TCAAGCCATTTCAAGCCATT
CCTAGCCCTTCCTAGCCCTT
ACCAA 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 895 <21013 <211> 543 <212>DNA <213>大冠鷲 4 201031755 <400> 13 CTAGACTAAT AGGTTGCGGT CCCACCACGC AATCCGTCAG TGTAAACAAT 50 TCCATTTCCC CTGTAGTTAA TATTTTGGGA GAAATACCAT CTGGAAAAAT 100 TTCAATCCTC ACCATGTTTT GTACTGGAGG TGTTGTAATA TGATCATAGG 150 GTGTTTGATT ATGAATATTC CAGCTGTTTA ACAAAAAAAC TGCTTTAGTA 200 AGATGTGAAC TCCAATGTTG TAAAGTTTTA GTACTGGTTA GCTTTTTTAA 250 TTGTTCCTTC AACATCCCAT TCATTCTTTC AATCAAGCCA TTAGCTTGGG 300 GATGGTAGGC ATTGTGGAAT ATCCAATCTA TCCCTAGCCC TTGAGCCCAA 350 TCAAGGGCTC CAAGTGGAAC ACCACTTGGA ACACCAAGTG TTCCTTGGTC 400 ACTTTGTATT TGGTGAGGAG GTCCGTATTG ATGAATGAGT TGTTCTAGTG 450 CTTCAATTGT GTTATGTTGA TTAGCATACT TGGTGGGTTT AGCAAAAAAC 500 AGTCCTGACA CTGTATCCAC AGCAGTGAAT ACATATCGCC ACC 543ACCAA 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 895 <21013 <211> 543 <212>DNA <213> Great Crown 4 201031755 <400> 13 CTAGACTAAT AGGTTGCGGT CCCACCACGC AATCCGTCAG TGTAAACAAT 50 TCCATTTCCC CTGTAGTTAA TATTTTGGGA GAAATACCAT CTGGAAAAAT 100 TTCAATCCTC ACCATGTTTT GTACTGGAGG TGTTGTAATA TGATCATAGG 150 GTGTTTGATT ATGAATATTC CAGCTGTTTA ACAAAAAAAC TGCTTTAGTA 200 AGATGTGAAC TCCAATGTTG TAAAGTTTTA GTACTGGTTA GCTTTTTTAA 250 TTGTTCCTTC AACATCCCAT TCATTCTTTC AATCAAGCCA TTAGCTTGGG 300 GATGGTAGGC ATTGTGGAAT ATCCAATCTA TCCCTAGCCC TTGAGCCCAA 350 TCAAGGGCTC CAAGTGGAAC ACCACTTGGA ACACCAAGTG TTCCTTGGTC 400 ACTTTGTATT TGGTGAGGAG GTCCGTATTG ATGAATGAGT TGTTCTAGTG 450 CTTCAATTGT GTTATGTTGA TTAGCATACT TGGTGGGTTT AGCAAAAAAC 500 AGTCCTGACA CTGTATCCAC AGCAGTGAAT ACATATCGCC ACC 543
<210> 14 <211> 193 <212> DNA <213>大冠鷲 <400> 14 GGTGGCGATA TGTATTCACT GCTGTGGATA CAGTATCAAG ACTGTTTTTT 50 GCTAAACCCA CCAAATATAC TAATCAGCAT AGCACAATTG AAGCATTAGA 100 ACAACTCATT CTCTCCCAAA ATATTAACTA CAGGGGAAAT GGAATTGTTT 150 ACACCAACGG ATTGTGTGGT GGGACCGCAA CCTATTAGTC TAG 193 <210> 15 <211>734 <212〉DNA <213>大冠鷲 <400> 15 GTAACGGATA CTCTGACCAG GATTAGAGGG GCCCTGCCTC CAGCCAGGTG 50 GAGGAAAGGG ACAACCGGGT CTACTGGACA GTGTGGATTC GATGGCCTGG 100 CACATCACAC TGTCCTGGTT TCAGCTGGGA TAGAGTTAAT TGTCTTCCTA 150 GTAGCTGGTA TAGTGCTATG TTTTGAGTTC AGTATGAGAA GAATGTTGAT 200 AACACTGATG TTTTCAGTTG TTGCTAAGGA ATGTTTAGTC TAAAGTCAAG 250 GATTTTTCAG CTTCTCATGC CCAGCCAGCA AGAAAGCTGG AGGGGCACAA 300 GAAGTTGGCA CAGGACAGAG CCAGGGCAGC AGACCCAAAG AGGCCAACGG 350 GGTATTCCAT ACCATGTGAT GTCATGTCTT GTATATACAC TGGGGGGAGT 400 GGGGGTGGGG GGATTGCCGC TCAGGGACTA ACTGGACATC GGTCGGCGGG 450 TAGTGAGCAA TTGCATTGTG CATCACTTGC ATATTCCAAT CCTTTTATTA 500 TTACTGTTGT CATTTTATTA GTGTTACCAT TATCATTATT AGTTTCTTCC 550 TTTCTGTACT GTTAAACCGT TCCTATCTCA ACCCACGAGT TTTACTTCTT 600 TTCCCGATTC TCTCCCCCAT CCCACTGGGT GGCGGGGAAG TGAGTGAGCA 650 GCTGCGAGGT GCTTAGTTGC TGGCTGGGGT TAAACCATGA CACAGACCCA 700 CAGGAATATA AGGCTCTAGT AGACACTGGT GCAC 734 5 201031755 <210> 16 <211>147 <212>DNA <213>大冠鷲 <400> 16 GTGCACCAGT GTCTACTAGA GCCTTATATT CCTGTGGGTC TGATGTGCCA 50 GGTCATCGAA TCCACACTGT CCAGTAGACT CGGTTGTCCC TTTCCTCCAC 100 CTGGCTGGAG GCAGGGCCCC TCTAATCCTG GTCAGAGTAC CCGTTAC 147 <210> 17 <211>895 <212>DNA <213>鳳頭蒼鷹 ❹ <400> 17 CTGCAGCTGT TAATCCTCTC TCAATACAAA AGGCAGATGA GTTAGTTAAA 50 GTACAGGCTA ACCAAATCTA AGTATTTACA TTTTGATCTC ATGGAATTGT 100 ATCCAGGGCA TGTGCCTGTA GTACAAGACT ACAAAGCATG ATGAACCAAC 150 CTATGATAGG AGAGGAGAAC AGGAGTGTCG TCTCCTTCCA ATAATACATA 200 TGCCATTGCT CCAGCTCCTT CAGCTAATAT CACTCTGGGT TTGATAACCT 250 GATGTGGGGT AATTGCCCAC ACAGATTGGA GAGCTATGGC TTGTGCTTTT 300 . TCAGACTGAA CTTCAATCTG ATGTTGGGTT TGCGACACCA ATAACACCAT 350 TCCAATGCTA TCTCCTCTAG ATAAGGCACA GGTATTTGTC AAAGATACCT 400 GAAATACAAG AACTCGAGAA TCTGATATCA ACAGAGGATG TAAAATAAGA 450 « GGAGAAGTTG GGGTACAGAA CCATGTGTCA TTCTCAGGGG GTATTATATG 500 CACCTTCACG CCTAGACTAA TAGGTTGCGG TCCCACCACG CAATCCGTCA 550 GTGTAAACAA TTCCATTTCC CCTGTAGTTA ATATTTTGGG AGAAATACCA 600 TCTGGAAGAA TTTCAATCCT CACCATGTTT TGTACTGGAG GTGTAATACG 650 ATCATAGGGT GTTTGATTAT GAACATTCTG CCTGTTTAAC AAAAAAACTG 700 CTTTAGTAAG ATGTGAACTC CAATGTTGTA AAGTTTTAGT ACTGGTTGGC 750 TTTTTTAATT GTTCCTTCAA CATCCCATTC ATTCTTTCAA TCAAGCCATT 800 ATCTTGGGGA TGGTAGGCAT TGTGGAATAT CCAATCTATC CCTAGCCCTT 850 A GAGCCCAATC AAGGGCTCCA AGTGGAACAC CACTTGGAAC ACCAA 895 6<210> 14 <211> 193 <212> DNA <213> Great Crown<400> 14 GGTGGCGATA TGTATTCACT GCTGTGGATA CAGTATCAAG ACTGTTTTTT 50 GCTAAACCCA CCAAATATAC TAATCAGCAT AGCACAATTG AAGCATTAGA 100 ACAACTCATT CTCTCCCAAA ATATTAACTA CAGGGGAAAT GGAATTGTTT 150 ACACCAACGG ATTGTGTGGT GGGACCGCAA CCTATTAGTC TAG 193 <210> 15 <211>734 <212>DNA<213> Great Crown<400> 15 GTAACGGATA CTCTGACCAG GATTAGAGGG GCCCTGCCTC CAGCCAGGTG 50 GAGGAAAGGG ACAACCGGGT CTACTGGACA GTGTGGATTC GATGGCCTGG 100 CACATCACAC TGTCCTGGTT TCAGCTGGGA TAGAGTTAAT TGTCTTCCTA 150 GTAGCTGGTA TAGTGCTATG TTTTGAGTTC AGTATGAGAA GAATGTTGAT 200 AACACTGATG TTTTCAGTTG TTGCTAAGGA ATGTTTAGTC TAAAGTCAAG 250 GATTTTTCAG CTTCTCATGC CCAGCCAGCA AGAAAGCTGG AGGGGCACAA 300 GAAGTTGGCA CAGGACAGAG CCAGGGCAGC AGACCCAAAG AGGCCAACGG 350 GGTATTCCAT ACCATGTGAT GTCATGTCTT GTATATACAC TGGGGGGAGT 400 GGGGGTGGGG GGATTGCCGC TCAGGGACTA ACTGGACATC GGTCGGCGGG 450 TAGTGAGCAA TTGCATTGTG CATCACTTGC ATATTCCAAT CCTTTTATTA 500 TTACTGTTGT CATTTTATT A GTGTTACCAT TATCATTATT AGTTTCTTCC 550 TTTCTGTACT GTTAAACCGT TCCTATCTCA ACCCACGAGT TTTACTTCTT 600 TTCCCGATTC TCTCCCCCAT CCCACTGGGT GGCGGGGAAG TGAGTGAGCA 650 GCTGCGAGGT GCTTAGTTGC TGGCTGGGGT TAAACCATGA CACAGACCCA 700 CAGGAATATA AGGCTCTAGT AGACACTGGT GCAC 734 5 201031755 < 210 > 16 < 211 > 147 < 212 > DNA < 213 > Large Crown <400> 16 GTGCACCAGT GTCTACTAGA GCCTTATATT CCTGTGGGTC TGATGTGCCA 50 GGTCATCGAA TCCACACTGT CCAGTAGACT CGGTTGTCCC TTTCCTCCAC 100 CTGGCTGGAG GCAGGGCCCC TCTAATCCTG GTCAGAGTAC CCGTTAC 147 <210> 17 <211>895 <212>DNA <213> Crested Goshawk ❹ <; 400 >. 17 CTGCAGCTGT TAATCCTCTC TCAATACAAA AGGCAGATGA GTTAGTTAAA 50 GTACAGGCTA ACCAAATCTA AGTATTTACA TTTTGATCTC ATGGAATTGT 100 ATCCAGGGCA TGTGCCTGTA GTACAAGACT ACAAAGCATG ATGAACCAAC 150 CTATGATAGG AGAGGAGAAC AGGAGTGTCG TCTCCTTCCA ATAATACATA 200 TGCCATTGCT CCAGCTCCTT CAGCTAATAT CACTCTGGGT TTGATAACCT 250 GATGTGGGGT AATTGCCCAC ACAGATTGGA GAGCTATGGC TTGTGCTTTT 300 TCAGACTGAA CTTCAATCTG ATGTTGGGTT TGCGACACCA ATAACACCAT 350 TCCAATGCTA TCTCCTCTAG ATAAGGCACA GGTATTTGTC AAAGATACCT 400 GAAATACAAG AACTCGAGAA TCTGATATCA ACAGAGGATG TAAAATAAGA 450 «GGAGAAGTTG GGGTACAGAA CCATGTGTCA TTCTCAGGGG GTATTATATG 500 CACCTTCACG CCTAGACTAA TAGGTTGCGG TCCCACCACG CAATCCGTCA 550 GTGTAAACAA TTCCATTTCC CCTGTAGTTA ATATTTTGGG AGAAATACCA 600 TCTGGAAGAA TTTCAATCCT CACCATGTTT TGTACTGGAG GTGTAATACG 650 ATCATAGGGT GTTTGATTAT GAACATTCTG CCTGTTTAAC AAAAAAACTG 700 CTTTAGTAAG ATGTGAACTC CAATGTTGTA AAGTTTTAGT ACTGGTTGGC 750 TTTTTTAATT GTTCCTTCAA CATCCCATTC ATTCTTTCAA TCAAGCCATT 800 ATCTTGGGGA TGGTAGGCAT TGTGGAATAT CCAATCTATC CCTAGCCCTT 850 A GAGCCCAATC AAGGGCTCCA AGTGGAACAC CACTTGGAAC ACCAA 895 6
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