TW201009074A - Generation of tumor-free embryonic stem-like pluripotent cells using inducible recombinant RNA agents - Google Patents

Generation of tumor-free embryonic stem-like pluripotent cells using inducible recombinant RNA agents Download PDF

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TW201009074A
TW201009074A TW098114454A TW98114454A TW201009074A TW 201009074 A TW201009074 A TW 201009074A TW 098114454 A TW098114454 A TW 098114454A TW 98114454 A TW98114454 A TW 98114454A TW 201009074 A TW201009074 A TW 201009074A
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TWI461531B (en
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Shi-Lung Lin
David Tang-Xi Wu
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Shi-Lung Lin
David Tang-Xi Wu
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Priority claimed from US12/149,725 external-priority patent/US9567591B2/en
Priority claimed from US12/318,806 external-priority patent/US20090203141A1/en
Priority claimed from PCT/US2009/030432 external-priority patent/WO2009091659A2/en
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Abstract

The present invention generally relates to a method for developing, generating and selecting tumor-free embryonic stem (ES)-like pluripotent cells using electroporation delivery of an inducible tumor suppressor mir-302 agent into mammalian cells. More particularly, the present invention relates to a method and composition for generating a Tet-On/Off recombinant transgene capable of expressing a manually re-designed mir-302 microRNA (miRNA)/shRNA agent under the control of doxycyclin (Dox) in human somatic/cancer cells and thus inducing certain specific gene silencing effects on the differentiation-associated genes and oncogenes of the cells, resulting in reprogramming the cells into an ES-like pluripotent state.

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201009074 六、發明說明: 【發明所屬之技術領域】 本發明一般而言係關於用來發育、生成及篩選不含腫瘤之 類胚胎幹(ES)多能性細胞的一種手段及方法,其使用在感興趣 之該等細胞中之一重組腫瘤抑制因子微型核醣核酸(miRNA) 或小髮夾型RNA(shRNA)試劑的基因轉殖表現。更明確言之, 本發明係關於用來生成一非自然發生之重組内含子及其組成 物的一種基因轉殖方法及由可誘導性核酸組成,其可經剪接及 處理而在哺乳動物細胞中形成小型核醣核酸_八)基因靜默 效應子(如miRNA先驅物(pre-miRNA)及/或shRNA)内,然後 誘發在發育及細胞分化相關之基因及致癌基因中的某些特定 基因靜默效應’導致將該等細胞轉化成類ES多能性狀態中。 較佳地’該等小型RNA基因靜默效應子包括類踵瘤抑制子之 miRNA ’ 像是:mir-302a、mir-302b、mir-302c、mir-302d,及 其人造重設之shRNA同源衍生物與其組合。換句話說,如此 生成之該等多能性類幹細胞可在無哺乳細胞(feeder_ftee)之細 胞培養條件下培養。感興趣之該等細胞包括體外(ζ·„ 、離 體(ex Wvo)及/或體内〇 v/vo)分離之體細胞或癌症細胞。 【先前技術】 近來在人類幹細胞之研究已顯示在移植治療中之一高度期 望的潛力。然而,用來選殖人類幹細胞之該等來源受限,且極 難控制其純度及品質。在1998年,James Thomson等人(如: 201009074 美國專利第5,843,780號、第6,200,806號、第7,029,913號, 及第7,220,584號)自人類胚胎之晚囊胚(lateblastocysts)分離第 一株人類胚胎幹(ES)細胞株(Thomson等人,(1998) 282 : 1145-1147)。HI及H9細胞係得自該等分離之人類ES細 胞的兩株典型細胞株。兩年後,Gearhart等人(如:美國專利 第6,090,622號、第6,245,566號’及第6,331,406號)也發展出 一種自後囊胚(post-blastocyst)人類胚胎分離類ES原生生殖細 Q 胞之方法。因為該等ES細胞分離方法的方式必須破壞原先胚 胎,引發了許多倫理及人道關注,其質疑將該等批細胞用於 臨床治療上的正當性。 在最近幾年’治療安全及使用知情同意上的問題也受到注 意。例如,因為ES細胞生長需要由周圍「哺乳細胞」纖維母 細胞所釋放的一些不確定因子,所有人類ES細胞較佳地係在 一層小鼠或人類纖維母細胞上生長(Reubin〇ff等人之美國專利 ® 第6,875,607號)。然而,該等纖維母細胞哺乳細胞呈現不同之 表面抗原,其通常污染ES細胞抗原之純度並可引起病人的免 疫排斥。儘管已發展了 一些無哺乳細胞之培養條件,該等無哺 乳細胞方法中沒有一個能將該未分化之Es細胞狀態維持一段 長時間。不幸地,在目前任何可得之培養條件下,人類ES細 胞株不能達到100%的群體純度。甚至是在最佳之含哺乳細胞 培養條件下,一些(約5%-1〇。/。或更多)ES細胞總是傾向分化成 其它組織細胞類型並失去其幹細胞特性。得自該等ES細胞之 201009074 最常觀察到的細胞類型之一係®^胎瘤(teratoma)。畸胎瘤係通 常得自人類生殖系細胞的一種腫瘤,其包含類似胚胎内胚層 (endoderm)、中胚層(mesoderm)及外胚層(ectoderm)組織之多重 類腫瘤細胞類型。因此,如何避免哺乳細胞之細胞污染、增加 幹細胞純度並減少腫瘤形成之風險係本幹細胞研究的三個主 要課題。 2006年時,Takahashi與Yamanaka引介誘導性多能性幹細 胞(induced pluripotent stem cells,iPS cells) (Ce// 126 : 663-676)。藉由使用四個轉錄因子基因(〇咖),, c-Myc及尤/月]之反轉錄病毒傳送進入小鼠纖維母細胞内, Takahashi與Yamanaka成功在體外將該等體纖維母細胞轉化 並轉形成類ES之iPS細胞株。此方法之成功率在該全部所測 試之細胞群中估計少於0.002%_2%。在2〇〇7年,該等ips細 胞之基因及行為特性經觀察係類似該等小鼠ES細胞的特性 (Okita 等人,(2007) Ato/彤 448 : 313-317 ; Wemig 等人,(2007) 伽騰448 : 318-324)。同時,Yu等人使用類似的方法,但以 另一組部分不哪義子,魏麟自人類_母細胞之新穎 iPS細胞株’該等轉錄因子包括:⑽、s〇x2、跑呢及 等人,(2007)¾⑽318 : 1917_192〇)。然而,Yu的方法雜201009074 VI. Description of the Invention: [Technical Field of the Invention] The present invention generally relates to a method and method for developing, generating and screening embryonic stem (ES) pluripotent cells free of tumors, which are used in Gene transfer performance of recombinant tumor suppressor microRNA (miRNA) or small hairpin RNA (shRNA) reagents in one of these cells of interest. More specifically, the present invention relates to a gene transfer method for generating a non-naturally occurring recombinant intron and a composition thereof, and consisting of an inducible nucleic acid which can be spliced and processed in a mammalian cell. Formation of small ribonucleic acid _ VIII) gene silencing effectors (such as miRNA precursors (pre-miRNA) and / or shRNA), and then induce specific gene silencing effects in genes involved in development and cell differentiation and oncogenes 'leaving to convert these cells into an ES-like pluripotent state. Preferably, the mini-RNA gene silencing effectors include miRNA-like tumor suppressor miRNAs such as: mir-302a, mir-302b, mir-302c, mir-302d, and their artificially reprogrammed shRNA homologous derivatives The object is combined with it. In other words, the pluripotent stem cells thus produced can be cultured under cell culture conditions without feeder cells (feeder_ftee). Such cells of interest include somatic or cancer cells isolated in vitro (ex vivo, ex Wvo, and/or in vivo v/vo). [Prior Art] Recent studies in human stem cells have been shown in One of the highly desirable potentials of transplantation therapy. However, such sources for the selection of human stem cells are limited and extremely difficult to control their purity and quality. In 1998, James Thomson et al. (eg: 201009074 US Patent No. 5,843,780) No. 6,200,806, 7,029,913, and 7,220,584) isolate the first human embryonic stem (ES) cell line from late blastocysts of human embryos (Thomson et al., (1998) 282: 1145-1147 The HI and H9 cell lines were obtained from two typical cell lines of such isolated human ES cells. Two years later, Gearhart et al. (e.g., U.S. Patent Nos. 6,090,622, 6,245,566, and 6,331,406) A method for isolating ES-derived progenitor cells from post-blastocyst human embryos has also been developed. Because of the manner in which these ES cell isolation methods must destroy the original embryo, many ethical and human concerns have arisen. It is suspected that these batches of cells are used for clinical treatment. In recent years, 'treatment safety and the use of informed consent have also received attention. For example, because ES cell growth needs to be surrounded by surrounding "lacking cells" fibroblasts Some of the undetermined factors of release, all human ES cells are preferably grown on a layer of mouse or human fibroblasts (Reubin ff et al., U.S. Patent No. 6,875,607). However, these fibroblasts have different surface antigens that generally contaminate the purity of the ES cell antigen and can cause immune rejection in patients. Although some culture conditions for non-mammalian cells have been developed, none of these non-dairy cell methods maintain this undifferentiated Es cell state for a prolonged period of time. Unfortunately, human ES cell lines do not achieve 100% population purity under any of the currently available culture conditions. Even under optimal conditions of mammalian cell culture, some (about 5% - 1 〇 / / or more) ES cells tend to differentiate into other tissue cell types and lose their stem cell properties. One of the most commonly observed cell types from 201009074 of these ES cells is the ® teratoma. Teratoma is a tumor commonly obtained from human germline cells that contains multiple tumor cell types like embryonic endoderm, mesoderm and ectoderm. Therefore, how to avoid cell contamination of mammalian cells, increase stem cell purity and reduce the risk of tumor formation are the three main subjects of stem cell research. In 2006, Takahashi and Yamanaka introduced induced pluripotent stem cells (iPS cells) (Ce//126: 663-676). By using four transcription factor genes (〇咖), c-Myc and 尤/月] retroviruses into mouse fibroblasts, Takahashi and Yamanaka successfully transformed these fibroblasts in vitro and Transformation into an ES-like iPS cell line. The success rate of this method is estimated to be less than 0.002% _2% in all of the tested cell populations. At 2 and 7 years, the genetic and behavioral characteristics of these ips cells were observed to be similar to those of these mouse ES cells (Okita et al., (2007) Ato/彤 448: 313-317; Wemig et al. 2007) Garten 448: 318-324). At the same time, Yu et al. used a similar method, but in another group of parts, the novel iPS cell line of human-maternal cells from Weilin, including: (10), s〇x2, running, etc. , (2007) 3⁄4 (10) 318: 1917_192 〇). However, the method of Yu is mixed.

Takahas㈣方法效率低。該等Μ細胞應用之優點顯示出 配合體細胞核轉移(軸a—udear transfer ,SCNT)技術 不僅解決了原先ES細胞方法的倫理問題,也提供了對病人」 201009074 善的潛在療法(Meissner 等人 ’(2006) iVaiWre 439 : 212-215)。 此iPS型SCNT治療已測試用來處理基因轉殖小鼠模型中的鐮 刀細胞貧血症(Hanna 等人,(2007)*SW⑼ce318 : 1920-1923)。 , 然而,仍有兩個未解決的問題;其一係反轉錄病毒之基因轉殖 使用’其二係致癌基因之使用(如:c-场^及尤於)。反轉錄病 毒感染係可將四個大型轉錄因子基因轉殖地傳送進標的細胞 内的唯一有效手段;然而,多個反轉錄病毒載體隨機插入該標 G 的細胞基因體也可能影響其它非標的基因。這造成疑問,因為 由於不確定之反轉錄病毒插入通常會引起細胞變異,特別是當 一或多個轉殖基因係致癌基因時。如何避免由該等轉錄因子誘 發iPS細胞形成腫瘤目前為止係難解的。 lPS細胞之另一缺點係其非均質性。為生成一 iPS細胞,至 少三或更多個不同之轉錄目子基目必驗由反觸病毒感染 來插入單-細胞基因體中。然而,由於不同之反轉錄病毒轉殖 ® 基因呈現不同比率之傳送效率及插入變異,多個反轉錄病毒插 人通常造成宿主細胞基因體中各式各樣之轉殖基因組合。僅有 具適虽比率及數目之該等喃轉錄因子基因的細胞可變成具 有良好多能性的iPS細胞。此係為何在反轉錄病毒插入後該等 iPS細胞僅表現整個細胞群的〇 〇〇2%_2%,而佔該等細胞超過 98%之其它細胞係以複雜之不確定的轉殖細胞組合而轉形。為 了收集具正確轉殖基因組合之純邮細胞,需要―系列繁靖的 細胞筛選程序(ShinyaYam域a之翻專 7,风255號)。 201009074 雖然們細胞戦機制尚未清楚,但是此技術不需要多個轉錄 調節子來協鶴基因之雜化及發f减之去活化間的 〇ct4~Sox2~c-Myc~Klf4 4 〇ct4~Sox2~Nanog-~LIN28 m 的組合效應辦直接触祕祕基因;細,解效應如何, 造成取消體細胞分化所必要之整體發育訊息尚未確定。除轉殖. 基因⑽外,iPS方法所使用之所有其它轉殖基因實際上均 包含在某些_細崎育的起始酸巾。藉由將料發育訊息 放在起’該等發育訊息之協調或擾亂以某種方式終止了細胞❿ 分化’然後將該細胞轉形回類ES狀態。這非自然機制,且可 包含不確定之風險,像細胞變異及腫瘤形成。 體細胞核齡(SCNT)之實驗已顯㈣細驗幻卩母細胞之 細胞質的雜合可形成多能性類幹細胞,其指出在該㈣細胞之 細胞質中的某些母系元素而非該細胞核中之轉錄因子在核轉 化中佔有重要角色(Simc)nssc)n ㈣ Gurdon,(2004) 〇// 舰6 : 984-990)。在桑ί胚時期前之自然受精印及早期接合❹ 子中’母系元素負責正常幹細胞再生及多能性的調節及維持, 其全然無腫瘤形成之風險。這是為何在32_64細胞(桑葚胚)時 期刖之胚胎細胞係全部相同且全能的。母系元素在卵子生成期 間產生並存在於最初胚胎形成時期所需之成熟卵母細胞中。缺 乏Dicer(岱塞爾,微型核醣核酸生體合成作用時所需之一致性 核醣核酸酶)之小鼠卵母細胞制止減數分裂丨之分裂期,其指 出微型核醣核酸係卵母細胞中的主要母系元素之一 201009074 (Murchison 等人,(2007) GewejDev·21 : 682-693)。在鼠科動物 卵母細胞中,核糖核酸佔據母系元素之一大部分,其相當於全 部基因體轉錄分子之約45%(Stitzel等人,(2007)¾ce316 : 407-408)。在母系_胚系轉變期間,該等母系RNA很快地降解, 且該胚系基因之轉錄很早就在該2-4細胞時期時啟動,並產生 用於胚胎發育的訊息(O’Farrell等人,(2004) Cwr·所〇/. 14 : R35-45)。可以想見,許多該等母系rna係該等胚系基因之抑 ❺ 制子,以在胚胎發育的最初時期同步化發育訊息並維持全能性 /多能性之ES細胞再生。因此’母系版八可能係ES細胞維 持及再生所必要的該等主要母系元素之一。 總而言之,ES細胞維持及再生之自然方式係仰賴某些母系 RNA(作為抑制子)而非用於ips技術之該等四個轉錄因子(作 為活化子)。為了生成模擬Es細胞維持及再生之自然機制的類 ES多能性細胞,吾人極度需要一種新策略來識別及評估該等 〇 母系抓八的功能。可將該等已識別之母系RNA傳送進人類 成人幹細胞或體細胞,以維持該等幹細胞特性或將該等體細胞 轉化成一類ES狀態中,或兩者皆可。因此,吾人需要用來生 成類ES多能性細胞之有效、簡單且安全之方法及試劑組成 物’較佳地係使用母系。 【發明内容】 本發明提供-種方法,供至少—㈣乳動物細胞轉化為至少 一個多能鋪幹細胞。财法包含町_ :提供至少一細胞 201009074 基質,其表現複數個mir-302的標的細胞基因;提供至少一個 重組核酸組成物,其可經傳送、轉錄及處理成在該細胞基質中 與mir-302同源的至少一基因靜默效應子;及在mir_3〇2所標的 該等細胞基因受抑制的情況下,以該重組核酸組成物處理該細 胞基質。換句話說’本發明提供一種用來發育、生成及篩選類 胚胎幹(ES)魏性峨之方法,其使賴小做狀重組微型 核酶核酸(miRNA)試劑的異位表現’這些如mir-302a、 mir-302b、mir-302c、mir-302d,及其人造重設之 miRNA 先驅 物(pre-miRNA) ’及/或小髮夹型同源衍生物與其 組成物。非自然發生/人造/人工mir_3〇2試劑之設計包括小髮夾 型RNA(shRNA)及/或小干擾RNA(siRNA)同源衍生物或基因群 的失配(mismatched)及完美配對(perfectly matched)結構 (constructs) ’這全部都可改善標的專一性並減少基因轉殖傳送 及基因靜默所需之mir-302數量(拷貝數(copy_beri〇 天然微型核醣核酸(miRNA)通常係約長度18-27之核苷酸 (nucleotides,nt),並可依其相互之互補程度而直接降解其標的 訊息RNA(messenger RNA,_Α)或抑制該標的_八之轉 譯。mir-302家族(mir-302s)係一群高同源性之基因間miRNA, 其分享超過89%之同雜且在辭所有的哺乳動物間係一致 的。Mir-302家族包含四個成員,其經共同_作為—#_ (non-coding)之 RNA 基因群,包括:mir_3〇2b、她·迎c、 mir-302a、mir-302d及mir-367,其以五端至三端之方向連接(Suh 201009074 等人 ’ (2004)Dev·及·〇/· 270 : 488-498)。雖然 mir-367 及 mir-302 家族係共同表現,由於其對抗不同組之標的基因係截然不同的 . 種子基序(seed motif),其功能實際上係彼此不同的。頃發現在 ^ 許多哺乳動物之早期接合子及胚胎幹(ES)細胞中mir-302家族 之表現量極高(Tang 等人,(2007) Dev. 21 : 644_648 ; Suh 等人,(2004) Z)ev·及·〇/· 270 : 488-498)。在生長緩慢之ES細胞 中表現量最豐富,並在細胞分化及/或增殖後快速地減少。小鼠 ❹ 的卵母細胞缺乏岱塞爾(Dicer) ’其係miRNA生體合成作用所需 的一種一致性核醣核酸酶,因此該等卵母細胞停留於減數分裂 第一階段的分裂期(meiosis I),這表示該等miRNA在卵子生成 中扮演決定性的角色(Murchison等人,(2007) Gewes Dev. 21 : 682-693)。此外miRNA具有小型抑制RNA的特性,其可抑制 具高互補程度(complementarity)之標的基因的轉譯(Bartd,DJP. (20()4) Ce//116 _· 281-297),mir-302 家族可能係負責避免 ES 細 © 胞在早期胚胎形成期間任何可能之早熟分化的主要母系抑制 子。該等發現暗示mir-302家族在正常ES細胞維持及再生中扮 演重要的角色。 所有mir-302成員在其五端前十七個(17)核苷酸中分享一完 全相同(100%)的序列(包括完全種子基序),以及在其第23個核 苦酸成熟miRNA序列中具有整體:83%_96%的同源性。該種子 基序位在成熟miRNA序列之五端前八個核苷酸中,其決定在 該miRNA及其標的基因間的鍵合專一性及效率。根據連結至 201009074The Takahas (4) method is inefficient. The advantages of these sputum cell applications show that the technique of co-nuclear nuclear transfer (axis a-udear transfer, SCNT) not only solves the ethical problem of the original ES cell method, but also provides a potential therapy for the patient" 201009074 (Meissner et al. (2006) iVaiWre 439: 212-215). This iPS type SCNT treatment has been tested to treat squamous cell anemia in a gene transfer mouse model (Hanna et al., (2007) * SW (9) ce 318: 1920-1923). However, there are still two unresolved problems; the transcription of a line of retroviruses uses the use of its second lineage oncogenes (eg c-field ^ and especially). Retroviral infection is the only effective means to transfer four large transcription factor genes into the target cell; however, random insertion of multiple retroviral vectors into the cell genome of the G may also affect other non-target genes. . This is questionable because retroviral insertions due to uncertainty often cause cell variability, especially when one or more transgenic lines are oncogenes. How to avoid the formation of tumors by iPS cells induced by these transcription factors is currently incomprehensible. Another disadvantage of lPS cells is their heterogeneity. To generate an iPS cell, at least three or more different transcripts must be inserted into the mono-cell genome by anti-viral infection. However, because of the different ratios of delivery efficiency and insertional variation of different retroviral transfection genes, multiple retroviral insertions typically result in a diverse combination of transgenic genes in the host cell genome. Only cells with appropriate ratios and numbers of these transcript gene genes can become iPS cells with good pluripotency. Why does this iPS cell represent only 2%-2% of the entire cell population after retroviral insertion, while other cell lines that account for more than 98% of these cells are complex with uncertain combinations of transgenic cells. Transformed. In order to collect pure-post cells with the correct combination of transgenic genes, a series of cell screening programs (ShinyaYam domain a, No. 7, No. 255) are required. 201009074 Although the mechanism of cell rafting is not clear, this technique does not require multiple transcriptional regulators to hybridize the gene and to deactivate the 〇ct4~Sox2~c-Myc~Klf4 4 〇ct4~Sox2 The combined effect of ~Nanog-~LIN28 m is in direct contact with the secret gene; the fine, solution effect, the overall developmental message necessary to eliminate somatic differentiation has not been determined. In addition to the gene. (10), all other transgenic genes used in the iPS method are actually included in some of the initial acid wipes. The cell is transformed into an ES-like state by placing the material development message at the 'coordination or disruption of such developmental messages to somehow terminate cell ❿ differentiation'. This is an unnatural mechanism and can involve uncertainties like cell variability and tumor formation. Experiments on somatic cell age (SCNT) have been shown (4) The cytoplasmic heterozygosity of the scorpion blast cells can form pluripotent stem cells, which indicate some maternal elements in the cytoplasm of the cells, but not in the nucleus. Transcription factors play an important role in nuclear transformation (Simc) nssc)n (IV) Gurdon, (2004) 〇// Ship 6 : 984-990). The natural fertilization before the mulberry embryo and the early mating scorpion' maternal elements are responsible for the regulation and maintenance of normal stem cell regeneration and pluripotency, which is completely free of tumor formation risk. This is why the embryonic cell lines of the 32_64 cells (mulberry embryos) are all identical and versatile. Maternal elements are produced during oogenesis and are present in the mature oocytes required during the initial embryogenesis. A mouse oocyte lacking Dicer (a ribonuclease required for microribonuclear biosynthesis) stops the meiotic division of meiosis, which is indicated in the microribonucleotide oocyte One of the main maternal elements 201009074 (Murchison et al. (2007) Gewej Dev. 21: 682-693). In murine oocytes, ribonucleic acid occupies a large part of the maternal element, which is equivalent to about 45% of all transcripts of the gene (Stitzel et al., (2007) 3⁄4ce 316: 407-408). During maternal-germline transformation, these maternal RNAs degrade rapidly, and transcription of the germline gene is initiated very early in the 2-4 cell phase and produces messages for embryonic development (O'Farrell et al. Person, (2004) Cwr·〇〇/. 14 : R35-45). It is conceivable that many of these maternal rna are inhibitors of these germline genes to synchronize developmental messages during the earliest stages of embryonic development and to maintain pluripotent/pluripotent ES cell regeneration. Therefore, the 'parental version' may be one of the main maternal elements necessary for ES cell maintenance and regeneration. In summary, the natural mode of ES cell maintenance and regeneration relies on certain maternal RNAs (as inhibitors) rather than the four transcription factors (as activators) used in ips technology. In order to generate ES-like pluripotent cells that mimic the natural mechanisms of Es cell maintenance and regeneration, we are in desperate need of a new strategy to identify and evaluate the function of these 母 maternal catchers. The identified maternal RNA can be delivered into human adult stem cells or somatic cells to maintain the characteristics of the stem cells or to convert the somatic cells into a class of ES states, or both. Therefore, it is desirable for us to use an effective, simple and safe method and reagent composition for the production of ES-like pluripotent cells. SUMMARY OF THE INVENTION The present invention provides a method for converting at least - (iv) milk animal cells into at least one pluripotent stem cell. The Finance Act contains _: provides at least one cell 201009074 matrix, which represents a plurality of mir-302 target cell genes; provides at least one recombinant nucleic acid composition that can be transmitted, transcribed, and processed into mir- in the cell matrix 302 homologous at least one gene silencing effector; and in the case where the cellular genes indicated by mir_3〇2 are inhibited, the cellular matrix is treated with the recombinant nucleic acid composition. In other words, the present invention provides a method for developing, producing, and screening embryonic stem (ES)-like sputum, which allows ectopic expression of recombinant micronuclease nucleic acid (miRNA) reagents, such as mir-302a. , mir-302b, mir-302c, mir-302d, and their artificially relocated miRNA precursors (pre-miRNA) and/or small hairpin homologous derivatives and compositions thereof. The design of the non-naturally occurring/artificial/artificial mir_3〇2 reagent includes mismatched and perfectly matched (small-hairpin-type RNA (shRNA) and/or small interfering RNA (siRNA) homologous derivatives or gene groups (permatched) ) constructs 'all of which can improve target specificity and reduce the number of mir-302 required for gene transfer and gene silencing (copy number (copy_beri〇 natural microribonucleic acid (miRNA) usually is about 18-27 Nucleotides (nt), and can directly degrade their target message RNA (messenger RNA, _Α) according to their mutual complementarity or inhibit the translation of the target _ 八八. mir-302 family (mir-302s) A group of highly homologous intergenic miRNAs that share more than 89% of the same heterogeneity and are consistent among all mammals. The Mir-302 family consists of four members, which are shared as ## (non-coding) The RNA gene group, including: mir_3〇2b, her cum c, mir-302a, mir-302d, and mir-367, which are connected in a five-terminal to three-terminal direction (Suh 201009074 et al. (2004) Dev· and ·〇/· 270 : 488-498). Although the mir-367 and mir-302 families are common Now, because of its distinctly different genetic systems against different groups of seed motifs, the seed motifs are actually different from each other. They are found in many mammalian early zygote and embryonic stem (ES) cells. The performance of the mir-302 family is extremely high (Tang et al., (2007) Dev. 21: 644_648; Suh et al., (2004) Z) ev···〇/· 270: 488-498). The ES cells are the most abundant in expression and rapidly decrease after cell differentiation and/or proliferation. Mouse ❹ oocytes lack the consistency required for Dicer's miRNA biosynthesis. Ribonuclease, therefore, these oocytes stay in the first stage of meiosis (meiosis I), indicating that these miRNAs play a decisive role in egg production (Murchison et al., (2007) Gewes Dev. 21: 682-693). In addition, miRNAs have a small RNA-inhibiting property that inhibits translation of a gene with a high complementarity (Bartd, DJP. (20()4) Ce//116 _· 281- 297), the mir-302 family may be responsible for avoiding ES fine cells in early embryonic form Main matrilineal of any possible premature differentiation during suppressor. These findings suggest that the mir-302 family plays an important role in the maintenance and regeneration of normal ES cells. All mir-302 members share an identical (100%) sequence (including the complete seed motif) in the first seventeen (17) nucleotides of its five ends, as well as its 23th nucleotide acid mature miRNA sequence. It has an overall: 83% _96% homology. The seed motif is located in the first eight nucleotides of the five ends of the mature miRNA sequence, which determines the binding specificity and efficiency between the miRNA and its target gene. According to the link to 201009074

Sanger miRBase::Sequences 網站(http://microma. sanger.ac.uk/)資 料庫之「TARGETSCAN」(http://www.targetscan.org/vert 42/) 及 「 HCTAR-VERT 」 (http://pictar.bio.nyu.edu/cgi-bm/PicTar—vertebrate.cgi?)程式的預 測,其經導向幾乎對抗相同的細胞基因,包括在人類及小鼠中 超過445株的一致性基因。此外,mir-302也與mir-93、mir-367、 mir-37卜mir-372、mir-373,及mir-520家族成員分享某些重疊 之標的基因。大多數之該等標的基因係發育訊息及轉錄因子, ❹ 其與早期胚胎形成期間之譜系專一性細胞分化的初始及/或促 進作用有關(Lin等人’(2008b)蕭乂 14 : 2115-2124)。許多該等 標的基因也係熟知之致癌基因。因此’ mir-3〇2家族之功能更可 能抑制發育訊息及分化相關轉錄因子的整體生成,而非如先前 之iPS方法係在某些胚胎訊息傳遞路徑上建立轉錄刺激。此 外,由於許多該等標的發育訊息及分化相關之轉錄因子係致癌 基因,mir-302家族也可如一腫瘤抑制子般作用,以防止正常 0 ES細胞再生偏差而形成腫瘤。換句話說,本發明提供一種方 法’其用以生成不含腫瘤之類ES多能性細胞。例如,類胰島 素生長因子(insulin-like growth factors,IGF)係用於專對神經元 細胞譜系之分化的潛在發育訊息’該等訊息係經由Ras/Ra分有 / 、'糸刀裂劑活化蛋白質激雜(mitogen-activated protein kinase, MAPK)路徑或經由磷脂醯肌醇3·激酶(phosphatidylinosital 3-kinase ; PI3K)/Akt之訊息傳導路徑。相同之訊息傳遞路徑也 12 201009074 與許多腫瘤/癌症轉形相關,像是··腦瘤、乳癌、肺癌、前列腺 癌,及皮膚黑色素癌。本發明者發現IGF受體(IGFR>Ras/PI3K 訊息傳遞路徑中超過十八個成員係mir_3〇2家族的強力標的, 這表示在哺乳動物卵母細胞及ES細胞中有一極嚴密的封鎖以 防止神經元細胞分化。在許多其它各種細胞譜系上也觀察到類 似的mir-302家族抑制效應。根據上述證據,本發明者咸信 mir-302家族係正常ES細胞之維持與再生的主要調節者,其可 ϋ 能將已分化之體細胞轉化為均質的類ES狀態。 為測試mir-302家族之功能,本發明者已根據天然内含子 miRNA生體合成機制(圖1A)發展出第二型_聚合酶驅動 (Pol-11-driven)之miRNA表現系統’並順利地使用此系統體外地 及體内地產生天然、miRNA家族以及人造shRNA(圖ιΒ)。廣義 而言,該内含子係一基因之非編碼序列,其包括同一讀框内含 子(in-firame intron)、五端非轉譯區(5,_UTR;^三端非轉譯區 © (3 -UTR)。吾人先前之研究已證實有效成熟之miRNA可得自哺 乳動物基因之該等内含子區域,稱之為内含子微型核醣核酸 (intronic miRNA) (Lin 等人,(2003)所0咖所所叩加 Commun. 310.754-760 ; Lin # A »(2005) Gene 356 : 32-38) (Lin 等人 ’(2003)伽c/ze/«所〇/%^及從(^〇和7«肌310 : 754-760 ; Lin 等人,(2005) Ge呢356 : 32-38)。因為約有50〇/〇之哺乳動物 miRNA係存在蛋白質編碼基因之該等内含子内,故内含子 miRNA表現係哺乳動物中常見之現象你制职泛等人,(2〇〇4) 13 201009074 版14 : 1902-1910)。如圖1A所示,内含子爪腺A 生體合成係仰賴新生之第二型RNA聚合酶介導(nascent Pd-II-mediated)之pre-mRNA轉錄及内含子剪接/切除之間的結 合交互作用’其係發生在叙基目馳染質觸麟的某些細 胞核區域内(Ghosh 等人,(2000)^4 6 : 1325_1334 ; Lin 等人, (2008a)价融-挪加所⑽細ce 13 : 2216-2230)。該等miRNA係 在其宿主基因(pre-mRNAs)之先驅轉錄分子内以第二型抓八聚 合酶(Ροΐ-Π)轉錄’並以剪接體及其它核醣核酸酶In(RNasein) 等核酸内切酶剪接以形成成熟之mjRNA(Lin等人,2003 ;Sanger miRBase::Sequences website (http://microma. sanger.ac.uk/) database "TARGETSCAN" (http://www.targetscan.org/vert 42/) and "HCTAR-VERT" (http: //pictar.bio.nyu.edu/cgi-bm/PicTar-vertebrate.cgi?) The program's predictions are directed against almost the same cellular genes, including more than 445 identical genes in humans and mice. In addition, mir-302 shares certain overlapping genes with mir-93, mir-367, mir-37, mir-372, mir-373, and mir-520 family members. Most of these target gene developmental messages and transcription factors are involved in the initiation and/or promotion of lineage-specific cell differentiation during early embryogenesis (Lin et al. (2008b) Xiao Yu 14: 2115-2124 ). Many of these genes are also well known to be oncogenes. Thus, the function of the 'mir-3〇2 family is more likely to inhibit the development of developmental messages and differentiation-associated transcription factors, rather than establishing transcriptional stimuli on certain embryonic message transmission pathways as in the previous iPS method. In addition, due to the developmental messages of these targets and the transcription factor-related oncogenes of differentiation, the mir-302 family can also act like a tumor suppressor to prevent normal 0 ES cell regeneration bias and form tumors. In other words, the present invention provides a method for generating ES pluripotent cells free of tumors. For example, insulin-like growth factors (IGF) are used for potential developmental messages specific to the differentiation of neuronal cell lineages. These messages are based on Ras/Ra/, '''''' The mitogen-activated protein kinase (MAPK) pathway or the signal transduction pathway via phospholipidlinosital 3-kinase (PI3K)/Akt. The same message transmission path is also associated with many tumor/cancer transformations, such as brain tumors, breast cancer, lung cancer, prostate cancer, and cutaneous melanoma. The present inventors have found that the IGF receptor (IGFR>Ras/PI3K message transmission pathway has a strong target of more than eighteen member lines of the mir_3〇2 family, indicating that there is a very tight blockade in mammalian oocytes and ES cells to prevent Neuronal cell differentiation. Similar mir-302 family inhibitory effects were observed in many other various cell lineages. Based on the above evidence, the inventors of the present invention, the mir-302 family, are the major regulators of maintenance and regeneration of normal ES cells, It can convert differentiated somatic cells into a homogeneous ES-like state. To test the function of the mir-302 family, the inventors have developed a second type based on the natural intron miRNA biosynthesis mechanism (Fig. 1A). _ polymerase-driven (Pol-11-driven) miRNA expression system' and successfully use this system to generate natural, miRNA families and artificial shRNAs in vitro and in vivo. In a broad sense, this intron is a A non-coding sequence of a gene, including the same in-firame intron, a five-terminal non-translated region (5, _UTR; ^ three-terminal untranslated region © (3 -UTR). Our previous studies have confirmed Effective mature miR NA can be derived from these intron regions of the mammalian gene and is referred to as the intronic miRNA (Lin et al., (2003) by the coffee company. Commun. 310.754-760; Lin # A »(2005) Gene 356 : 32-38) (Lin et al. (2003) ga c/ze/« 〇/%^ and from (^〇 and 7« muscle 310: 754-760; Lin et al (2005) Ge 356: 32-38). Since about 50 〇/〇 of mammalian miRNAs are present in these introns of protein-coding genes, intron miRNAs are a common phenomenon in mammals. You are a general practitioner, (2〇〇4) 13 201009074, 14 : 1902-1910). As shown in Figure 1A, the intron-claw A biosynthesis system is mediated by a second-type RNA polymerase. The binding interaction between pre-mRNA transcription and intron splicing/resection (nascent Pd-II-mediated) occurs in certain nuclear regions of the sylvestre-stained cytoplasm (Ghosh et al. (2000)^4 6 : 1325_1334 ; Lin et al., (2008a) price fusion - Noga (10) fine ce 13 : 2216-2230). These miRNAs are in the precursor transcriptional molecules of their host genes (pre-mRNAs). Grab the second type Octazyme (Ροΐ-Π) is transcribed and spliced with a splicing and other endonuclease such as RNasein to form mature mjRNA (Lin et al., 2003;

Danin-Kreiselman 等人 ’(2003) Mo/ Ce//11: 1279-1289);然而, 可能不需要此種程序(Ruby等人,(2〇〇7)448 : 83-86) °結果’内含子miRNA生體合成係以多個細胞内監測 系統嚴密調控,包括:第二型RNA聚合酶(Pol-II)轉錄、RNA 剪接、外體處理及無義介導RNA降解(nonsense-mediated RNA decay ’ NMD)。換句話說,該類miRNA基因靜默效應子係由 一細胞内機制釋放’該機制係選自RNA剪接、外體處理、無 義介導RNA降解、及其組合。由於此高度細胞内監測,可避 免在其它shRNA/siRNA表現系統中所發現的RNA過飽和問 題’因而造成在標的基因上一更有效、標的專一性且更安全的 基因靜默效應(Lin等人,2008a)。 藉由模擬該天然内含路徑(圖1A),本發明者發明 一種新穎内含子表現系統來轉錄紅色色偏螢光蛋白質 201009074 (red-shifted fluorescent protein,及GFP)之一重組轉殖基因,稱之 為办’其包含可產生内含子miRNA及/或類shRNA 基因靜默效應子的一種人造/人工剪接勝任内含子 (splicing-competent intron,§?^4ζ·)。該 SpRNAi 在該 §?蕭基因之pre_mRNA内以Pol-II共同轉錄,並藉由 RNA剪接來切開。接著’進一步將所剪接之办•處理成成 熟之基因靜默效應子,像是:天然miRNA及人造shRNA,因 ❹ 而在標的基因上引發特定之後轉錄基因靜默(posttranscriptional gene silencing,PTGS)效應。同時,在内含子剪接後,將該 知基因轉錄分子之外顯子鏈接在一起以形成用來 轉譯之RGFP標記蛋白質的一成熟mRNA,該RGFP標記蛋白 質可用來識別miRNA/shRNA表現。在其它實施例中,一些功 能性蛋白質外顯子可用來代替RGFP以提供額外之基因功能, 像是:用於體細胞轉化之胚胎幹(ES)基因標記。換句話說,該 〇 基因靜默效應子可經由後轉錄基因靜默、轉譯抑制、RNA干 擾’及/或無義介導降解來誘發一細胞内基因靜默效應。由於目 前在脊椎動物中所發現超過1000個天然miRNA種類尚未清楚 其功能,且仍不斷地識別出更多新的miRNA,本發明之内含子 miRNA表現系統可作為用來在體内及體外地測試該等miRNA 功能的有力工具。 该内含子包括數個一致之核苷酸組成部分,其包 含:一五端剪接位(5’-31)1以3也;8£(^10以0.4)、一分支點基序 15 201009074 (branch-point motif ’ BrP ; SEQ.ID.NO.6)、一多哺咬段 (poly-pyrimidine tract,ΡΡΤ ; SEQ.ID.N0.7 及 SEQ.ID.N0 8), 及一三端剪接位(3’-3|51以3也;8£(^10.]^0.5)。此外,一小髮央 型miRNA或s_A先驅物係插在該五端剪接位及該分支點基 序之間。此部分之内含子通常在RNA剪接及處理期間形成一 套馬索(lariat)結構。此外’該之三端包含一多重轉譯停 止密碼子區域(T codon),以增加内含子RNA剪接及nmd處理 的正確性。當此T codon在一細胞質mRNA中出現時,其發出 活化該NMD系統的訊息以降解該細胞中所累積的任何未建構 之RNA。然而,會保留高度建構之sh]RNA及先驅 miRNA(pre-miRNA)以供伽⑼進一步地酶切來分別形成成熟 之siRNA及miRNA。對於基因轉殖表現而言,吾人在及 基因(SEQ.ID.NO.22)之伽及限制位(第208個核苷酸)中人工地 合併•。此形成了一重組之办轉殖基因。酶 切具Drall切位之沖可在每一端產生具有三個内凹核苷酸 的AG_GN核微斷π,其在•插人後將分卿成五端剪 接位及二端剪接位。因為此内含子插入中斷了 RGFp蛋白質的 70整性’其可藉由内含子剪接來恢復,故吾人能經由在該等轉 染細胞中出現之紅色RGFP來判定該内含子miRNA/s_之 釋放及該抓沖mRNA之成熟。該及卿基因也包含多個外顯 剪接促進子(exonic splicing enhancer,ESE)以增加rka剪接之 正確性及效率。 201009074 在杈佳之具體實施例巾,本發卿—可鱗miRN施刪A 表見系統(圖2A及2B),其改善體内及體外之瓜恥心舰^a 祕程度的控制。此觀善不僅細於較安全之電穿孔法 (electroporation)/顯微注射法㈣咖剑㈣⑽來進行轉瘦基因傳 送’以代替易發生腫瘤的反轉錄病毒感染扣加^丨祕比邮, 同時也避免了在該等轉染細胞中⑽八過度累積的可能性。根 據此種改善,本發明者已成功地生成各種mir_3〇2轉導多能性 ❹ 幹pluripotent stem,mirPS)細胞株,其係源 自正常表皮皮膚細胞(mirPS-hpESC)、正常頭髮毛囊細胞 (mirPS-hHFC)之人類原代培養❻&町與癌症乳腺癌 MCF7(mirPS-MCF7)、前列腺癌 pc3(mirPS-PC3)及皮膚黑色素 癌Colo 829(mirPS-Colo)細胞。如圖2A及2B所示,本發明者 首先將人造mir-302家族pre-miRNA/s_A結構(圖3B)合併至 尸轉殖基因之内含子插入位(即:pVM/限制/ ⑩ 選殖位)’然後將該轉殖基因插進去氧羥(D〇x)_ 可誘發户似-⑶-仍*載體之多重選殖位(即:C7a/限制位), 因而形成〆<^-〇«-ir*S-mz>30Zs轉殖基因載體(圖3A)。換句話 說,該重組核酸組成物(如*及諸如此類) 包含藥物可誘發之基因表現載體。此外,該及GFi3也可 合併進基因表現載體中,其係選自質體、病毒載體、反轉位子、 及其組合。該办似⑷jGFP轉殖基因係以370鹼基對 (base-pair,bp)同源區域為側翼,該同源區域係用來重組插入該 17 201009074 宿主細胞基因體的標的位。在基因轉殖傳送方面, 載體(10_3〇 μβ)與該等宿主細胞(2〇〇 2〇⑻) 在一低滲性ΡΗ緩衝液(400 μΐ ;有蓋試管氏即饥也由)*混合, 且在400-450伏特下實行電穿孔法1〇〇微秒(啊)以將該轉殖基 因傳送進該等宿主細胞基因體内。在72小時後,使用 流式細胞計數儀及anti-RGFP及anti-Oct3/4單株抗體兩者以供 分離並收集基因轉殖mirPS成功之細胞(圖3C)。此新穎mir_3〇2 家族基因轉殖方法之成功率超過91%,其遠高於原先奶方法 ❿ 所發現之0.002%-2%的成功率該人造mir_3〇2家族之所有序 列係根據Sanger miRBase::Sequences程式之序列資料庫而化學 合成。/?7^-〇况7^載體編碼CMV驅動(灯抑制子基因 (CMV-driven tTS inhibitor gene)以去活化該轉殖基因之 皿-CW啟動子。當出現去氧羥(Dox)時,tTS之抑制功能則經Danin-Kreiselman et al. (2003) Mo/ Ce//11: 1279-1289); however, such a procedure may not be required (Ruby et al., (2〇〇7) 448: 83-86) ° The miRNA biosynthesis system is tightly regulated by multiple intracellular monitoring systems, including: second RNA polymerase (Pol-II) transcription, RNA splicing, exosome treatment, and nonsense-mediated RNA decay. 'NMD). In other words, the miRNA gene silencing effector is released by an intracellular mechanism. The mechanism is selected from the group consisting of RNA splicing, exosome processing, nonsense mediated RNA degradation, and combinations thereof. Due to this highly intracellular monitoring, RNA oversaturation problems found in other shRNA/siRNA expression systems can be avoided', resulting in a more efficient, target-specific and safer gene silencing effect on the target gene (Lin et al., 2008a) ). By simulating the natural intrinsic pathway (Fig. 1A), the inventors invented a novel intron expression system to transcribe a recombinant transgene of one of red-shifted fluorescent protein (2010) (red-shifted fluorescent protein, and GFP), It is called a splicing-competent intron (§?^4ζ·) that contains a silent effector that produces an intron miRNA and/or shRNA-like gene. The SpRNAi is transcribed together with Pol-II in the pre_mRNA of the §? Xiao gene, and is cleaved by RNA splicing. Then, the splicing process is further processed into mature gene silencing effectors, such as natural miRNAs and artificial shRNAs, which cause a specific posttranscriptional gene silencing (PTGS) effect on the target gene. At the same time, after intron splicing, the exon of the known gene transcriptional molecule is linked together to form a mature mRNA for translation of the RGFP-tagged protein, which can be used to recognize miRNA/shRNA expression. In other embodiments, some functional protein exons can be used in place of RGFP to provide additional gene functions, such as embryonic stem (ES) gene markers for somatic cell transformation. In other words, the 〇 gene silencing effector can induce an intracellular gene silencing effect via post-transcriptional gene silencing, translational repression, RNA interference', and/or nonsense-mediated degradation. Since more than 1000 natural miRNA species are currently found in vertebrates, their functions are not yet known, and more new miRNAs are still being recognized, the intron miRNA expression system of the present invention can be used both in vivo and in vitro. A powerful tool for testing the function of these miRNAs. The intron comprises a plurality of identical nucleotide components comprising: a five-terminal splice position (5'-31) 1 to 3 also; 8 £ (^10 to 0.4), a branch point motif 15 201009074 (branch-point motif 'BrP; SEQ.ID.NO.6), a poly-pyrimidine tract (ΡΡΤ; SEQ.ID.N0.7 and SEQ.ID.N0 8), and a three-terminal Splice position (3'-3|51 to 3 also; 8 £(^10.]^0.5). In addition, a small hairy miRNA or s_A precursor is inserted in the five-terminal splice site and the branch point motif The intron of this part usually forms a set of lariat structures during RNA splicing and processing. In addition, the three ends contain a multiple translation stop codon region (T codon) to increase the inclusion. Correction of daughter RNA splicing and nmd treatment. When this T codon appears in a cytoplasmic mRNA, it emits a message that activates the NMD system to degrade any unconstructed RNA accumulated in the cell. However, it retains a high degree of construction. Sh]RNA and precursor miRNA (pre-miRNA) are further digested by gamma (9) to form mature siRNA and miRNA, respectively. For gene transfer performance, we are in the gene (SEQ .ID.NO.22) artificially merged with the restriction bit (208th nucleotide). This forms a recombination of the transgenic gene. The enzyme cuts the rupture of the Drall cleavage at each end. The AG_GN nucleus with three concave nucleotides is micro-cut π, which will be divided into a five-terminal splice position and a two-terminal splice position after insertion, because this intron insertion interrupts the 70 integrity of the RGFp protein. It can be restored by intron splicing, so we can determine the release of the intron miRNA/s_ and the maturation of the capture mRNA via the red RGFP present in the transfected cells. It also includes a number of exonic splicing enhancers (ESEs) to increase the correctness and efficiency of rka splicing. 201009074 In the specific embodiment of the 杈 之 , , , , — — — — — mi mi mi mi mi mi mi mi mi mi 2A and 2B), which improves the control of the degree of secretness of the melons in the body and in vitro. This view is not only better than the safe electroporation/microinjection method (4), the sword (4) (10) Thin gene delivery' to replace the tumor-prone retrovirus infection The possibility of excessive accumulation of (10) eight in these transfected cells was also avoided. According to this improvement, the inventors have succeeded in generating various mir_3〇2 transducing pluripotent stem pluripotent stem, mirPS) cell lines, It is derived from normal epidermal skin cells (mirPS-hpESC), normal hair follicle cells (mirPS-hHFC), human primary culture ❻ & machi and cancer breast cancer MCF7 (mirPS-MCF7), prostate cancer pc3 (mirPS-PC3) And skin melanoma Colo 829 (mirPS-Colo) cells. As shown in Figures 2A and 2B, the inventors first incorporated the artificial mir-302 family pre-miRNA/s_A structure (Fig. 3B) into the intron insertion site of the cadaveric gene (ie: pVM/limitation/10 colonization). And then insert the transgenic gene into the deoxygenated hydroxyl (D〇x) _ to induce the multiple-selection of the vector--(3)- still* vector (ie: C7a/restriction), thus forming 〆<^- 〇 «-ir*S-mz> 30Zs transgenic gene vector (Fig. 3A). In other words, the recombinant nucleic acid composition (e.g., * and the like) comprises a drug-evokable gene expression vector. In addition, the GFi3 can also be incorporated into a gene expression vector selected from the group consisting of a plastid, a viral vector, an inverted vector, and combinations thereof. The (4) jGFP-transgenic gene line is flanked by a 370 base pair bp homologous region for recombinant insertion into the target position of the 17 201009074 host cell genome. In terms of gene transfer delivery, the vector (10_3〇μβ) is mixed with the host cells (2〇〇2〇(8)) in a hypotonic buffer (400 μΐ; covered tube is hungry)*, and Electroporation was performed at 400-450 volts for 1 〇〇 microsecond (ah) to deliver the transgene into the host cell genes. After 72 hours, both flow cytometry and anti-RGFP and anti-Oct3/4 monoclonal antibodies were used for isolation and collection of cells successfully transfected with mirPS (Fig. 3C). The success rate of this novel mir_3〇2 family gene transfer method is over 91%, which is much higher than the success rate of 0.002%-2% found in the original milk method 该. All sequences of the artificial mir_3〇2 family are based on Sanger miRBase: : Sequence synthesis of the Sequences program and chemical synthesis. /?7^-〇7^ Vector encodes the CMV-driven (TSV-driven tTS inhibitor gene) to deactivate the transgenic gene-CW promoter. When deoxyhydroxyl (Dox) occurs, The suppression function of tTS is

Dox中和,因此表現出轉殖基因及其編碼如以犯 家族。 ^ 在另一較佳具體實施例中,本發明提供一種基因工程方法, 其用來建構包含至少-個所需之介子的—人玉/人造&胤^内 含子’該介子係用來產生mir_3〇2家族或類mir_3〇2之miRNA、 shRNA及/或反義RNA基因靜默效應子。該办細z•係藉由合 成寡核苷酸元素的鏈結而形成,以供RNA剪接,合成募核皆 酸元素像是:五端剪接位、BrP、PPT、三端剪接位,及一些鏈 接寡核苷酸。寡核苷酸合成器可化學合成並鏈結該等元素。換 18 201009074 句話說,該内含子(如:办腦〇係以一化學合成方法來合成。 在其匕實細巾’鮮要奴鏈結可藉轉素關及接合來達 ' 成。換句話說,該内含子(如:柳哪亦可藉由核普酸重組方 絲形成。所得之内含子(如:办細柯直制來轉染至感興 趣之該等細胞内或是進一步地合併在宿主基因中以與該基因轉 錄分子(p_RNA)共同表現。因此,目前發明之重組核苷酸組 成物進一步地包含重組内含子,其編碼至少一個像是mir_3〇2 ❹ 的職基因靜默效應子。一般而言,該等内含子插入方法包 括酵素限制/選殖、同源DNA重組、轉位子合併、跳躍基因整 δ、反轉錄病毒感染,及其組合。該宿主基因係選自螢光蛋白 質(GFP)標記基因、胚胎幹(ES)標記基因、螢光酵素、以_2乳 糖表現基因、病毒基因、轉位子、海匕躍基因、人工重組基因及 天然細胞基因。換句話說,該重組核酸組成物進一步包括複數 個外顯子’其係選自螢光蛋白質標記基因、螢光酵素基因、lac_z ® 乳糖表現基因、胚胎幹細胞標記基因、病毒基因、細菌基因、 細胞標記基因、跳躍基因、轉位子、及其組合。在不受限制下, 本發明較佳使用用來指出mir-302家族表現的修飾紅螢光蛋白 質(RGFP)基因。 在一態樣中,該内含子包含一五端剪接位,其與 5’-GTAAGAGK-3,(SEQ.ID.N0.4)或 GU(A/G)AGU 基序 (SEQ.ID.NO.38)(即:5,-GTAAGAGGAT-3’(SEQ.ID.N0.37)、 5 ’-GTAAGAGT-3 ’(SEQ.ID.NO.39) 、 201009074 以 及 5 ’-GTAGAGT-3 ’(SEQ.ID.NO.40) S^GTAAGTMSEQ.ID.NOA))任-者同源,而其三端係三端^ 體剪接位(3’-acceptor splice site),該三端受體剪接位與 GWKSCYRCAG (SEQ.ID.N0.5)或 CT(A/G)A(C/T)NG 基; (即:5’-gatatcctgc Α(}_3,(8Εαιο.Ν〇42)、Dox neutralizes, thus exhibiting a transgenic gene and its coding as a family. In another preferred embodiment, the present invention provides a genetic engineering method for constructing a human jade/artificial & 胤^ intron comprising at least one desired meson Generating miRNA, shRNA and/or antisense RNA gene silencing effectors of the mir_3〇2 family or mir_3〇2. The thinning system is formed by synthesizing the link of oligonucleotide elements for RNA splicing, and the synthetic acid-like elements are: five-terminal splice sites, BrP, PPT, three-terminal splice sites, and some Link the oligonucleotide. An oligonucleotide synthesizer can chemically synthesize and link these elements. For the change of 2010 20107474, the intron (such as: the cerebral palsy is synthesized by a chemical synthesis method. In its tamping of the thin towel, the fresh slave chain can be transferred by the transfer and joints. In other words, the intron (eg, Liu can also be formed by recombination of nucleophilic acid. The resulting intron (eg, can be transfected into the cells of interest or Further incorporated in the host gene for expression in conjunction with the gene transcription molecule (p_RNA). Thus, the recombinant nucleotide composition of the present invention further comprises a recombinant intron encoding at least one such as mir_3〇2 ❹ Gene silencing effectors. In general, such intron insertion methods include enzyme restriction/selection, homologous DNA recombination, transposon merging, skip gene δ, retroviral infection, and combinations thereof. It is selected from the group consisting of fluorescent protein (GFP) marker gene, embryonic stem (ES) marker gene, luciferase, _2 lactose expression gene, viral gene, transposon, sea hopping gene, artificial recombinant gene and natural cell gene. In other words, the recombinant nucleic acid The adult further comprises a plurality of exons selected from the group consisting of a fluorescent protein marker gene, a luciferase gene, a lac_z ® lactose expression gene, an embryonic stem cell marker gene, a viral gene, a bacterial gene, a cell marker gene, a skip gene, and a transgene. The position, and combinations thereof. Without limitation, the present invention preferably uses a modified red fluorescent protein (RGFP) gene for indicating the expression of the mir-302 family. In one aspect, the intron comprises a five-terminal Splice site, which is associated with 5'-GTAAGAGK-3, (SEQ.ID.N0.4) or GU(A/G)AGU motif (SEQ.ID.NO.38) (ie: 5,-GTAAGAGGAT-3' (SEQ.ID.N0.37), 5 '-GTAAGAGT-3 '(SEQ.ID.NO.39), 201009074 and 5 '-GTAGAGT-3 '(SEQ.ID.NO.40) S^GTAAGTMSEQ.ID .NOA)) is a homologous, and its three-terminal three-terminal acceptor splice site, the three-terminal receptor splice site and GWKSCYRCAG (SEQ.ID.N0.5) or CT (A/G)A(C/T)NG base; (ie: 5'-gatatcctgc Α(}_3,(8Εαιο.Ν〇42),

5’-GGCTGCAG-3’及 5’-CCACAG-3’))任一者同源。換句話說, 該重組核酸組成物之内含子包含五端供體剪接位(5,_d〇nOTAny of 5'-GGCTGCAG-3' and 5'-CCACAG-3')) is homologous. In other words, the intron of the recombinant nucleic acid composition comprises a five-terminal donor splice site (5, _d〇nOT

splice site)、内含子插入位、分支點基序、多嘧啶段,及三端受 體剪接位。此外,分支點序列位在該等五端及三端剪接位之間, 其包含與5’-TACTWAY-3,(SEQ.ID.N0.6)基序同源之基序,像 是:5’-TACTAAC-3,及5,-TACTTAT-3,。換句話說,該分支點 基序包括該SEQ.ID.N0.6序列或與該SEQ.ID.N0.6序列同源。 該分支點序列之腺核普「A」核普酸在幾乎所有之勢接體内含 子中,藉由細胞(2,-5,)募腺苷合成酶及剪接體來形成一部分之Splice site), intron insertion, branch point motif, polypyrimidine segment, and tri-terminal acceptor splice. In addition, the branch point sequence is located between the five-terminal and three-terminal splice sites, and comprises a motif homologous to the 5'-TACTWAY-3, (SEQ.ID.N0.6) motif, like: 5 '-TACTAAC-3, and 5,-TACTTAT-3,. In other words, the branch point motif comprises or is homologous to the SEQ.ID.N0.6 sequence. The glandular nucleus "A" nucleotide in this branch point sequence forms part of the intron in almost all potential introns, by adenosine synthase and splicing of cells (2, -5)

(2’-5’)鏈接套馬索内含子RNA。此外,多嘧啶段係位在接近該 分支點及三端剪接位之間,其包含與 5,-(TY)m(C/-)(T)nS(C/-)-3,(SEQ.ID.N0.7) 或 5’-(TC)nNCTAG(G/-)-3’(SEQ.ID.N0.8)基序任一者同源之高 T 或C含量序列。符號「m」及「n」指示多個重覆,其^;更佳 地’ m的數量等於1〜3且n的數量等於7〜12。符號「―」係指 在該序列中可被略過之核苷酸。也有一些鏈接核苷酸序列係用 來連接所有該等合成内含子元素。根據37 CFR 1.822中關於用 20 201009074 於鮮酸及/½基酸相㈣之舰及格摘_,符號^ 係指腺嗓呤⑷或胸崎丁)/屎顿u),符號κ係指鳥料⑹ - 或胸♦定⑺/尿嘧啶(υ),符號s係指胞敏(c)或鳥嗓吟⑼, 符號Y係指胞錢(c)或胸麵T)/尿侧U),符號R係指腺 嗓呤(A)或鳥賴G),且符號N係指腺嗓呤⑷、胞嘧鄉)、 鳥11 票呤(G)或胸嘧啶(T)/尿嘧唆⑼。 在另-紐巾’表現各翻含子基目槪效應子之多瓣 ❹ 絲因及/或載體可用來達成多個標的基因上的基因靜默。在 其它實施例中’多個基因靜默效應子可由内含子介子產生。換 句話說,該内含子插入位包含至少一個與秦3〇2同源的基因 靜默效應子。例如:已報導在斑馬魚中之anti-卿P含 pre-miRNA内含子的異位表現產生兩個不同長度之藏皿, 稱之為miR-EGFP(282/3〇〇)及碰疋卿⑼㈣2),這指出該 知之介子可產生多個基因靜默效應子(Lin等人,2005)。 ® 在_例子巾’ β含子基目靜敝舒可無的細轉錄分子 (即.mRNA)雜合以形成用來引發二級肌^干摄效應㈣Ai) 的雙股siRNA。因為該等基因靜默效應子不斷地由該基因轉殖 載體製造,其將纾解有關體内快速咖八降解之疑慮。此策略 之優點係經由該載體型基因轉殖轉染或病毒感染的穩定傳 送其k供可罪之長期基因靜默效力。此外,本發明可在特定 RNA啟動子之控制下生產相關之基因靜默效應子,包 括:miRNA、S_A及siRNA,該特定RNA啟動子係選自第 21 201009074 二型RNA聚合酶(Ρ〇1-ΙΙ)、病毒聚合酶、第三型RNA聚合酶 (Pol-III) ’及四環黴素反應元素控制RNA聚合酶(tetracycline responsive element-controlled RNA polymerase,TRE)啟動子。 該等病毒啟動子係類Pol-II RNA啟動子,其係自巨細胞病毒 (cytomegalovirus,CMV)、反轉錄病毒長終端區(retrovims long-terminal region,LTR)、B 型肝炎病毒(hepatitis B virus , HBV)、腺病毒(adenovirus,AMV)及腺相關病毒(2'-5') Linked to the horseshoe intron RNA. In addition, the polypyrimidine moiety is located near the branch point and the three-terminal splice site, and comprises 5,-(TY)m(C/-)(T)nS(C/-)-3, (SEQ. ID.N0.7) or a high T or C content sequence homologous to either the 5'-(TC)nNCTAG(G/-)-3' (SEQ.ID.N0.8) motif. The symbols "m" and "n" indicate a plurality of repetitions, and ^ is preferably equal to 1 to 3 and the number of n is equal to 7 to 12. The symbol "-" refers to a nucleotide that can be skipped in this sequence. There are also linked nucleotide sequences that are used to link all of these synthetic intron elements. According to 37 CFR 1.822, use 20 201009074 for fresh acid and /1⁄2 acid phase (4) and pick _, symbol ^ refers to adenine (4) or sakisaki) / 屎 u u), symbol κ refers to bird material (6) - or chest ♦ (7) / uracil (υ), symbol s refers to cell sensitivity (c) or guanine (9), symbol Y refers to cell money (c) or chest T) / urine side U), symbol R refers to adenine (A) or guani G), and symbol N refers to adenine (4), cytosine), bird 11 (G) or thymidine (T) / uridine (9). The multi-valve 因 因 因 / / 表现 表现 表现 在 。 。 。 。 。 。 。 。 。 。 。 。 。 。 。 。 。 。 。 。 。 。 。 。 。 。 。 。 。 In other embodiments' multiple gene silencing effectors can be produced by intron mesons. In other words, the intron insertion site contains at least one gene silencing effector homologous to Qin 3〇2. For example, it has been reported that the ectopic expression of the anti-Qing P-containing pre-miRNA intron in zebrafish produces two different lengths of Tibetan dishes, called miR-EGFP (282/3〇〇) and 疋疋卿(9) (iv) 2), which indicates that the known meson can produce multiple gene silencing effectors (Lin et al., 2005). ® is heterozygous for the fine transcriptional molecule (i.e., mRNA) in which the β-intron-based β-subunit is silent to form a double-stranded siRNA for inducing a secondary muscle dry effect (IV) Ai). Because these gene silencing effects are continually produced by the gene transfer vector, they will alleviate concerns about rapid degradation in vivo. The advantage of this strategy is the stable transmission of its long-term gene silencing efficacy via the vector-type gene transfection or viral infection. In addition, the present invention can produce related gene silencing effectors under the control of a specific RNA promoter, including: miRNA, S_A and siRNA, the specific RNA promoter is selected from the 21st 201009074 type 2 RNA polymerase (Ρ〇1- ΙΙ), viral polymerase, type III RNA polymerase (Pol-III)' and tetracycline responsive element-controlled RNA polymerase (TRE) promoter. These viral promoters are Pol-II RNA promoters from cytomegalovirus (CMV), retroviral long-terminal region (LTR), hepatitis B virus (hepatitis B virus). , HBV), adenovirus (AMV) and adeno-associated virus

(adeno-assodated virus,AAV)中分離而得。例如:慢病毒 LTR 啟動子足以提供超過每一細胞5χ105個拷貝的pre-mRNA轉錄 分子。也可在該病毒聚合酶啟動子之前插入藥敏感抑制子 (即.以控制該等基因靜默效應子之轉錄率。該抑制子可用 化學藥劑或抗生素來抑制,該等化學藥劑或抗生素係選自氨基 醋類抗生素(G418)、四環黴素(tetraCyCiine)、去氧窥 (doxycydin)、新黴素(neomycin)、安比西林(ampicimn)、康徽 素(kanamycin)及其衍生物等等之群。換句話說,目前發明之重 組核酸組成物的表現可用-_物抗生素触物來調節,像 是:四環黴素衍生物例如:去氧_四環黴素衍生物其中之—。 依據本發明,所需内含子黯介子係以細胞内機制來切 並釋放’然後在特定基因標的上引發所欲之基因靜默效應,』 特定基因標的與該職介子具有高互補性;而該宿主基阳 錄分子之鱗外顯子顧接在—灿形細來產生具 白功能的缝mRNA ’這練導或標記蛋的可選自紅輪 22 201009074 光蛋白質(RGFP/EGFP)、胚胎基因標記、螢光酵素、β半乳醣 苷酶(lac-Z)及其衍生物。該報導/標記蛋白之表現可用於識別在 該等轉染細胞中該等内含子基因靜默效應子的數量程度及位 置,以及有助於確認所得基因靜默效應。在其它實施例中,以 该外顯子鏈接形成的成熟mRNA可用在習知之基因治療以代 替受損或遺失之基因功能,或增加特定基因表現。換句話說, 該等基因靜默效應子(與mir-302同源)也可包括反義rna、核 ❿ _ 酵素(ribozyme)、短臨時 j^A(short temporary RNA, stRNA)、細微非編碼 RNA(tiny non-coding RNA,tneRNA;)、 Piwi 交互作用 RNA(Piwi-interacting RNA,piRNA)、雙股 RNA(double-stranded RNA,dsRNA)、siRNA、shRNA、miRNA, 及其前驅物(即:pri-/pre-miRNA)。該等内含子基因靜默效應 子之使用係用來將不想要之標的基因靜默的有力工具,該等標 的基因係選自外源基因、致病轉殖基因、病毒基因、突變基因、 參 致癌基因、疾病相關非編碼RNA基因與許多其它類型之蛋白 質編碼以及非編碼細胞基因。 因為一些天然pre-miRNA的幹環(stem-l〇op)結構太大且/或 太複雜’無法配合該*5洲及GFP轉殖基因,本發明者通常使 用人造重設 tRNAmet 環(即 5’_(A/U)UCCAAGGGGG_3,) (SEQ.ID.NO.43)來代替該等天然 pre_miRNA 環。該 tRNAmet環 顯示出能如同天然miRNA般經由相同之Ran-GTP及Exp〇rtin-5 傳送機制有效地協助將人造重設之miRNA自細胞核輸出至細 23 201009074 胞質(Lin等人,(2005) Gewe356 : 32-38)。有利的是,本發明目 前使用一對人造改善pre-mir-302環,包括:5,-GCTAAGCCAG GC-3’ (SEQ.ID.N0.1)及 5,-GCCTGGCTTA GC-3, (SEQ.ID.N0.2) ’其提供與天然pre-miRNA相同的細胞核輸出 效率’但不會干擾tRNA輸出。並且,此改善加強了 mir-302a-mir-302a*及 mir-302c-mir-302c*雙鍵體(duplex)之形 成,其可增加mir-302家族的整體功能及穩定度。該等新穎 pre-miRNA 環之設計係以 mir_3〇2b/mir-302a 之 tRNAmet 環與短 幹環(short stem-loop)的組合來修正,其係高度地表現在胚胎幹 細胞中而非表現在其它分化組織細胞中。因此,在mir_3〇2家 族中使用該等重組/人造/人工pre-miRNA/shRNA環將不會干擾 我們身體中之天然miRNA路徑,因而較不具細胞毒性且更加 安全。 mir-302 pre-miRNA家族之基因群(cius㈣係藉由合成 mir-302同源衍生物之雜合及鏈結/接合來形成,其在五端至三 端方向上包含四個部分:mir_3〇2a、mir-302b、mir-302c及 mir-302d pre-miRNA(圖3B)。所有該等人造重設之mir_3〇2 miRNA/shRNA分子在其前十七個核苷酸中具有完全相同之五Separated from (adeno-assodated virus, AAV). For example, the lentiviral LTR promoter is sufficient to provide more than 5 copies of pre-mRNA transcriptional molecules per cell. A drug-sensitive inhibitor can also be inserted prior to the viral polymerase promoter (ie, to control the transcription rate of the gene's silent effector. The inhibitor can be inhibited by a chemical agent or an antibiotic selected from the group consisting of chemical agents or antibiotics selected from the group consisting of Amino vinegar antibiotics (G418), tetracycline (tetraCyCiine), deoxycydin, neomycin, ampicillin, kanamycin, and derivatives thereof In other words, the performance of the recombinant nucleic acid composition of the present invention can be regulated by an antibiotic touch, such as a tetracycline derivative such as a deoxytetracycline derivative. Inventively, the desired intron meson meson is cut and released by an intracellular mechanism and then elicits a desired gene silencing effect on a particular gene target, the specific gene target having high complementarity with the meson; The squamous exon of the yang recording molecule is connected to the can-like shape to produce the white-skinned splicing mRNA. This can be selected from the red wheel 22 201009074 photoprotein (RGFP/EGFP), embryonic gene marker, Fluorescent , beta-galactosidase (lac-Z) and derivatives thereof. The expression of the reporter/marker protein can be used to identify the extent and location of the silent effector of the intron genes in the transfected cells, and It helps to confirm the resulting gene silencing effect. In other embodiments, mature mRNAs formed by the exon linkage can be used in conventional gene therapy to replace impaired or lost gene function, or to increase specific gene expression. These gene silencing effectors (homologous to mir-302) may also include antisense rna, ribozyme, short temporary RNA (stRNA), fine non-coding RNA (tiny non) -coding RNA, tneRNA;), Piwi-interacting RNA (piRNA), double-stranded RNA (dsRNA), siRNA, shRNA, miRNA, and its precursors (ie: pri-/pre - miRNA). The use of these intron gene silencing effectors is a powerful tool for quantifying unwanted genes, selected from exogenous genes, pathogenic transgenes, viral genes, mutations. Gene, oncogene, Disease-related non-coding RNA genes encode many other types of proteins as well as non-coding cellular genes. Because some natural pre-miRNA stem-l〇op structures are too large and/or too complex 'cannot match the *5 continent And GFP transgenes, the inventors typically used artificially reprogrammed tRNAmet loops (i.e., 5'_(A/U)UCCAAGGGGG_3,) (SEQ. ID. NO. 43) in place of the native pre-miRNA loops. The tRNAmet loop has been shown to efficiently assist in the export of artificially reprogrammed miRNAs from the nucleus to the fine cytoplasm of the 201009074 cytoplasm via the same Ran-GTP and Exp〇rtin-5 delivery mechanisms (Lin et al., (2005) Gewe356: 32-38). Advantageously, the present invention currently employs a pair of artificially improved pre-mir-302 loops, including: 5,-GCTAAGCCAG GC-3' (SEQ. ID. N0.1) and 5,-GCCTGGCTTA GC-3, (SEQ. ID.N0.2) 'It provides the same nuclear export efficiency as the native pre-miRNA' but does not interfere with tRNA output. Moreover, this improvement enhances the formation of mir-302a-mir-302a* and mir-302c-mir-302c* duplexes, which increase the overall functionality and stability of the mir-302 family. The design of these novel pre-miRNA loops is modified by the combination of the tRNAmet loop of mir_3〇2b/mir-302a and the short stem-loop, which is highly expressed in embryonic stem cells and not in other differentiation. In tissue cells. Therefore, the use of these recombinant/artificial/artificial pre-miRNA/shRNA loops in the mir_3〇2 family will not interfere with the natural miRNA pathways in our bodies and is therefore less cytotoxic and safer. The mir-302 pre-miRNA family of genes (cius (4) is formed by the synthesis and chaining/joining of synthetic mir-302 homologous derivatives, which consists of four parts in the five-terminal to three-terminal direction: mir_3〇 2a, mir-302b, mir-302c and mir-302d pre-miRNA (Fig. 3B). All of these artificially-reset mir_3〇2 miRNA/shRNA molecules have identical five in their first seventeen nucleotides.

I 端(如:5’-UAAGUGCUUC CAUGUUU-3,(SEQ.ID.N0.3))。以 下列出用於mir-302 pre-miRNA基因群之DNA重組的合成寡核Terminal I (eg 5'-UAAGUGCUUC CAUGUUU-3, (SEQ. ID. N0.3)). The synthetic oligonucleotides for DNA recombination of the mir-302 pre-miRNA gene group are listed below.

皆酸:包括:同義 mir-302a(mir-302a-sense),5,-GTCCGATC(JTAcidic: including: synonymous mir-302a (mir-302a-sense), 5,-GTCCGATC (JT

CCCACCACTT AAACGTGGAT GTACTTGCTT 24 201009074CCCACCACTT AAACGTGGAT GTACTTGCTT 24 201009074

TGAAACTAAATGAAACTAAA

GAAGTAAGTGGAAGTAAGTG

CTTCCATGTTCTTCCATGTT

TTGGTGATGG ATCTCGAGCT C-3,(SEQ.ID.NO.29);反義 mir-302a(mir-302a-antisense) , 55 -GAGCT CGAGATTGGTGATGG ATCTCGAGCT C-3, (SEQ.ID.NO.29); antisense mir-302a(mir-302a-antisense) , 55 -GAGCT CGAGA

TCCATCACCATCCATCACCA

CTTTAGTTTCCTTTAGTTTC

AAACATGGAAAAACATGGAA

AAAGCAAGTAAAAGCAAGTA

GCACTTACTTGCACTTACTT

CATCCACGTTCATCCACGTT

TAAGTGGTGG GACGATCGGA C-3’(SEQ.ID.NO.30);同義 mir-302b,5,-ATCTCGAGCT CGCTCCCTTC AACTTTAACA TGGAAGTGCT TTCTGTGACT TTGAAAGTAA GTGCTTCCAT GTTTTAGTAG GAGTCGCTAG CGCTA-35 (SEQ.ID.NO.31);反義 mir-302b,5,_TAGCGCTAGCTAAGTGGTGG GACGATCGGA C-3' (SEQ.ID.NO.30); synonymous mir-302b,5,-ATCTCGAGCT CGCTCCCTTC AACTTTAACA TGGAAGTGCT TTCTGTGACT TTGAAAGTAA GTGCTTCCAT GTTTTAGTAG GAGTCGCTAG CGCTA-35 (SEQ.ID.NO.31); antisense mir- 302b,5,_TAGCGCTAGC

GACTCCTACTGACTCCTACT

TTCAAAGTCATTCAAAGTCA

AAAACATGGAAAAACATGGA

CAGAAAGCACCAGAAAGCAC

AGCACTTACTAGCACTTACT

TTCCATGTTATTCCATGTTA

AAGTTGAAGGAAGTTGAAGG

GAGCGAGCTC GAGAT-3,GAGCGAGCTC GAGAT-3,

(SEQ.ID.NO.32);同義 mir-302c ,5’-CGCTAGCGCT(SEQ.ID.NO.32); synonymous mir-302c, 5'-CGCTAGCGCT

ACCTTTGCTTACCTTTGCTT

TGTGAAACAGTGTGAAACAG

TAACATGGAGTAACATGGAG

AAGTAAGTGCAAGTAAGTGC

GTACCTGCTGGTACCTGCTG

TTCCATGTTTTTCCATGTTT

CAGTGGAGGC GTCTAGACAT-3,(SEQ.ID.NO.33);反義 mir-302c,5,-ATGTCTAGAC GCCTCCACTG AAACATGGAACAGTGGAGGC GTCTAGACAT-3, (SEQ.ID.NO.33); antisense mir-302c,5,-ATGTCTAGAC GCCTCCACTG AAACATGGAA

GCACTTACTTGCACTTACTT

CTGTTTCACACTGTTTCACA

CAGCAGGTACCAGCAGGTAC

CTCCATGTTACTCCATGTTA

AAGCAAAGGT AGCGCTAGCG-3,AAGCAAAGGT AGCGCTAGCG-3,

(SEQ.ro.NO.34);同義 mir-302d , 5’-CGTCTAGACA(SEQ.ro.NO.34); synonymous mir-302d, 5’-CGTCTAGACA

TAACACTCAATAACACTCAA

ACATGGAAGCACATGGAAGC

ACTTAGCTAA 25 201009074ACTTAGCTAA 25 201009074

GCCAGGCTAA GTGCTTCCAT GTTTGAGTGTGCCAGGCTAA GTGCTTCCAT GTTTGAGTGT

TCGACGCGTC AT-3’(SEQ.ID.NO.35);及反義 mir-302d, 5,-ATGACGCGTC GAACACTCAA ACATGGAAGCTCGACGCGTC AT-3' (SEQ.ID.NO.35); and antisense mir-302d, 5,-ATGACGCGTC GAACACTCAA ACATGGAAGC

ACTTAGCCTG GCTTAGCTAA GTGCTTCCATACTTAGCCTG GCTTAGCTAA GTGCTTCCAT

GTTTGAGTGT TATGTCTAGA CG-3, (SEQ.ID.NO.36) (Sigma-Genosys,St. Louis,MO)。在其它實施例中,吾人可使 用人造重設之shRNA,其係以合成同義mir-302家族, 5,-GTCCGATCGT CATAAGTGCT TCCATGTTTTGTTTGAGTGT TATGTCTAGA CG-3, (SEQ.ID.NO.36) (Sigma-Genosys, St. Louis, MO). In other embodiments, we can use artificially reprogrammed shRNAs to synthesize the synonymous mir-302 family, 5,-GTCCGATCGT CATAAGTGCT TCCATGTTTT

AGTGTGCTAA GCCAGGCACA CTAAAACATGAGTGTGCTAA GCCAGGCACA CTAAAACATG

GAAGCACTTA TCGACGCGTC AT-3’(SEQ.ID.NO.27)與反義 mir-302 家族,5,-ATGACGCGTC GATAAGTGCT TCCATGTTTT AGTGTGCCTG GCTTAGCACA CTAAAACATG GAAGCACTTA TGACGATCGG AC-3, (SEQ.ID.NO.28)之雜合來形成,以代替簡單内含子插入的 mir-302pre-miRNA基因群。換句話說,該等較佳的基因靜默效 應子之一係以SEQ.ID.NO.27與8五(3.10.:^0.28.雜合形成的一重 組核酸序列。該mir-302 shRNA向所有天然之mir-302成員分 享超過91%的同源性,並標輕人類中相同之細胞基因。 關於該mir-302 pre-miRNA/s_A之内含子插入,由於該重 組办轉殖基因之插入位在其五端及三端分別以 /W及Mw/限制/選殖位作為切位,該先驅介子可藉由各種 pre-miRNA/s_A介子簡單地移除及取代(如:mir_3〇2 26 201009074Hybridization of GAAGCACTTA TCGACGCGTC AT-3' (SEQ.ID.NO.27) with antisense mir-302 family, 5,-ATGACGCGTC GATAAGTGCT TCCATGTTTT AGTGTGCCTG GCTTAGCACA CTAAAACATG GAAGCACTTA TGACGATCGG AC-3, (SEQ.ID.NO.28) To form a mir-302 pre-miRNA gene group instead of a simple intron insertion. In other words, one of the preferred gene silencing effectors is a recombinant nucleic acid sequence formed by the hybridization of SEQ.ID.NO.27 and 8(3.10.:^0.28. The mir-302 shRNA is directed to all Natural mir-302 members share more than 91% homology and label the same cellular genes in humans. About the insertion of the mir-302 pre-miRNA/s_A intron, due to the insertion of the recombination gene The cleavage position is defined by /W and Mw/restriction/selection at its five-terminal and three-terminal, respectively. The precursor meson can be simply removed and replaced by various pre-miRNA/s_A mesons (eg mir_3〇2 26 201009074

pre-miRNA/shRNA),其具有配合該等/w及Mw/限制位的相 配粘著端(cohesive end)。藉由針對各種基因轉錄分子來改變該 等内含子的介子,本發明之内含子mir_3〇2家族表現系統可用 作體外及體内地誘發標的基因靜默的有力工具。對於長度確認 及轉殖基因純化而言,該mir-302插入办結構(10 ng) 係以聚合酶連鎖反應(polymerase chain reaction,PCR)與一對寡 核苷酸引子(即:5’-CTCGAGCATG GTGAGCGGCC 〇 TGCTGAA-3’ (SEQ.ID.NO.23)及 5,-TCTAGAAGTT GGCCTTCTCG GGCAGGT-3’(SEQ.ID.NO.24))來複製,其在 94。(:、52-57°C及之後在68°C各執行一分鐘,共執行25-30個 循環。所得之PCR產物(〜900-1100 bp)在2%洋菜膠上層析,然 後以膠體萃取工具(gel extraction kit)來萃取及純化(Qiagen, CA)。在確認該DNA序列後,該插入mir-302之5^\冰-及GF尸 的純化轉殖基因經進一步地插入一 載體之限制/選 ❹ 殖位(即:刀w/-C7a/位),以形成用於細胞内表現的 必轉殖基因表現載體(圖3A)。 可使用選自以下之一種方法來達成將該;77^-〇料7^-而>3似y 轉殖基因載體傳送進哺乳動物細胞内:微脂體/化學轉染法 (liposomal/chemical transfection)、電穿孔法(electroporation)、基 因槍穿透法(gene gun penetration)、轉位子/反轉位子插入法 (transposon/retrotransposon insertion)、跳躍基因整合(jumping gene integration)、顯微注射(micr〇-injection),及反轉錄病毒/慢 27 201009074 病毒感染(retr〇Viral/lentiviral ώΜ〇η)。為避免隨機轉殖基因插 入及細胞變異的風險’本發明者較佳地使用與同源重組配合之 電穿孔法以將該卿也抓㈣必轉殖基因載體傳送進感興 趣之宿主細胞。例如:該Φ解姻卿轉殖基因係以- 370 驗基對(bp)同源區域為側翼,以用來重組插入靠近l〇C727977 所在區域之三端紐處的人_色體6巾,在祕域中並無已 知之基因編碼。頃偵測到在此單一位置中精確地插入pre-miRNA/shRNA) with a cohesive end that matches the /w and Mw/restriction sites. The intron mir_3〇2 family expression system of the present invention can be used as a powerful tool for inducing target gene silencing in vitro and in vivo by altering the mesons of such introns for various gene transcriptional molecules. For length confirmation and purification of the transgenic gene, the mir-302 insertion structure (10 ng) was polymerase chain reaction (PCR) with a pair of oligonucleotide primers (ie: 5'-CTCGAGCATG) GTGAGCGGCC 〇TGCTGAA-3' (SEQ.ID.NO.23) and 5,-TCTAGAAGTT GGCCTTCTCG GGCAGGT-3' (SEQ.ID.NO.24) were replicated at 94. (:, 52-57 ° C and then at 68 ° C for one minute each, a total of 25-30 cycles were performed. The resulting PCR product (~900-1100 bp) was chromatographed on 2% acacia, then A gel extraction kit is used for extraction and purification (Qiagen, CA). After confirming the DNA sequence, the purified transgenic gene of 5^\冰- and GF corps inserted into mir-302 is further inserted into a vector. Restriction/selection of colonies (ie, knife w/-C7a/position) to form a transgenic gene expression vector for intracellular expression (Fig. 3A). One of the following methods can be used to achieve this ; 77^-〇77-和>3like y transgene vector delivery into mammalian cells: liposomal/chemical transfection, electroporation, gene gun Gene gun penetration, transposon/retrotransposon insertion, jumping gene integration, microinjection (micr〇-injection), and retrovirus/slow 27 201009074 Viral infection (retr〇Viral/lentiviral ώΜ〇η). To avoid random transfer of gene insertion The risk of entry and cellular variation' The present inventors prefer to use an electroporation method in conjunction with homologous recombination to deliver the transgenic gene vector into the host cell of interest. For example, the Φ solution The transgenic gene line is flanked by the - 370 genomic pair (bp) homologous region, and is used to recombine the human chromophore 6 in the vicinity of the region where l〇C727977 is located. Known gene coding. It is detected that it is accurately inserted in this single position.

SpRNAi-RGFP(風 4A)。铒此在 d〇x 存在時,該 SpmAi-RGFP φ 轉絲因及魏碼mir_3G2冑叙械全雜職卿 讎之勝CMF 騎化蚊。本㈣者&在人類正常 及癌症體細胞兩者中測試了此種可誘發她捕家族表現的新 穎方法’該紐細桃括:正常表皮讀細胞、正常輕毛囊 細胞、癌症乳腺癌MCF7、前列腺癌PC3,及黑色_ c〇1〇細 胞。換句話說,該哺乳動物細胞可轉化為一多能性類幹狀態, 該哺乳動物細祕選自人_胞、正倾細胞、患赫_、 〇 腫瘤或癌症細胞、人_髮毛囊細胞、人膚細胞及其組合。 所得之該等mir-302轉導多能性幹(mir_3〇24ransduced pluripotent stem ’ mirPS)細胞在相同之基因體位置處全都僅攜帶 該轉殖基因之—或二個共存的重覆序列 (隱omitant C_s)(圖4A),這表示該整個—_3〇2濃度可影響 該等mirPS細胞的存活。吾人也已觀察到mk_3〇2家族及其標 記RGFP mRNA之表現程度將隨著D〇x濃度提高而增加(圖 28 201009074 4B)。整個mu>302濃度必須表現得超過3〇倍⑽也)但低於5〇 倍’以觸發將該體細胞轉化為類ES多能性幹細胞。由於在頭 髮毛囊及皮膚細胞中其極低的表現率(僅增加約Μ倍),所以由 Pol-III或CMV啟動子驅動之目前可得的直接(外 顯)siRNA/s_A表現系統無法運作。這可能是因為該天然 mir-302基因群之樣板太短且具結構,以致無法以ρ〇ι_πι或 CMV啟動子直接地轉錄。因此,本發明提供一種可誘發機制, 0 其以具體藥物(即:D〇x)在體外及體内地控制mir_3〇2家族的表 現程度,這可作為除了該等細胞内監測系統外的一第二道防 線。在本發明之該等mirPS細胞中不會偵測到因j^a累積或 過飽和所造成的細胞毒性。 本發明已採用該可誘發轉殖基因表現系統的新穎設計及策 略’稱之為如先則提及之,並將其用於基 因轉殖地表現在人類體細胞/癌症細胞中之mir_3〇2家族 ❹ (mir-302s)的該等成員或同源衍生物,因此可將該等體細胞/癌症 細胞轉化成類胚胎幹(ES)的多能性狀態。在較佳具體實施例 中’本發明提供一種用於使用藥物可誘發重級核酸組成物之方 法,該組成物可被傳送、轉錄及處理而成在人類細胞中之類 mir-302 miRNA/shKNA分子/同源衍生物,因此在該等細胞中之 mir-302標的之發育及分化相關基因誘發特定之基因靜默效 應,本方法包含以下步驟:a)提供:认細胞基質,其表現mir_3〇2 家族標的之複數個發育及分化相關基因,及u)重組核酸組成 29 201009074 物’其可轉錄編碼複數個非編碼mir_302miRNAs/shRNAs或其 同源衍生物的分離RNA,該複數個非編碼mir_3〇2 miRNAs/shRNAs或其同源衍生物藉由細胞内機制依次被處理 成成熟之mir-302 miRNAs/s_As或其同源衍生物中,因此能 抑制在該細胞基質中之該等標的基因的功能;b)以該重組核酸 · 組成物來處理該細胞基質,其係在使在該細胞基質中之該等標 的基因功能受抑制的狀況下處理。更佳的是,該藥物可誘發重 組核酸組成物係加0?2载體,其包含插入重組mir-302家族基 ❹ 因群(mir_3〇2s ; SEQ.ID.N0.29-SEQ.ID.N0.36 之雜合)或人造重 設 mir-302 shRNA 同源衍生物(即·· SEq.id N〇 27 及 SEQ.ID.NO.28之雜合)任一個於分轉殖基因中。該 細胞基質可用體外(in vitro)、離體(ex vivo)及/或體内(in viv〇)任 一種方式表現該mir-302miRNA/shRNA及其標的基因。之後, 將該細胞基質轉化或轉形成類ES狀態,其不僅呈現標準ES細 紙橡說,如· Oct3/4、SSEA3、SSEA4、Sox2、Nanog、良 LIN-28, ❹ 並且包含高度去曱基化基因體,其類似經過幹細胞轉化之接合 子基因體。 應用此發明,本發明者已在七個方面成功地達成mir_3〇2.SpRNAi-RGFP (Wind 4A). In this case, when the d〇x is present, the SpmAi-RGFP φ turn wire and the Wei code mir_3G2 胄 械 全 全 全 杂 杂 杂 C C C C C C C C C C C C C C C C C C C C This (4) person & tested this novel method that can induce her family to be arrested in both human normal and cancer somatic cells. 'The new powder includes: normal epidermal cells, normal light hair follicle cells, cancer breast cancer MCF7, Prostate cancer PC3, and black _ c〇1〇 cells. In other words, the mammalian cell can be transformed into a pluripotent dry state selected from the group consisting of a human cell, a positively inclined cell, a human _, a sputum tumor or a cancer cell, a human hair follicle cell, Human skin cells and combinations thereof. The resulting mir-302 transduced pluripotent stem 'mirPS cells all carry only the transgenic gene or two coexisting repeat sequences at the same locus position (hid omitant) C_s) (Fig. 4A), which indicates that the entire concentration of -3〇2 can affect the survival of these mirPS cells. We have also observed that the degree of expression of the mk_3〇2 family and its marker RGFP mRNA will increase as the concentration of D〇x increases (Fig. 28 201009074 4B). The entire mu>302 concentration must be expressed more than 3 fold (10) but less than 5 fold' to trigger the conversion of the somatic cells to ES-like pluripotent stem cells. The currently available direct (exo) siRNA/s_A expression system driven by the Pol-III or CMV promoter is inoperable due to its extremely low rate of performance in hair follicles and skin cells (only a few fold increase). This may be because the template of the native mir-302 gene group is too short and structural so that it cannot be directly transcribed by the ρ〇ι_πι or CMV promoter. Accordingly, the present invention provides an inducible mechanism for controlling the degree of expression of the mir_3〇2 family in vitro and in vivo by a specific drug (ie, D〇x), which can be used as a system other than such intracellular monitoring systems. Two lines of defense. Cytotoxicity due to accumulation or supersaturation of j^a is not detected in the mirPS cells of the present invention. The present invention has employed this novel design and strategy for inducing a transgenic gene expression system, which is referred to as the mir_3〇2 family, which is expressed in human somatic/cancer cells. Such members or homologous derivatives of ❹ (mir-302s) can thus convert such somatic/cancer cells into a pluripotent state of embryonic stem-like (ES). In a preferred embodiment, the invention provides a method for inducing a heavy nucleic acid composition using a drug that can be transmitted, transcribed, and processed into a mir-302 miRNA/shKNA in a human cell. Molecules/homologous derivatives, therefore, the developmental and differentiation-related genes of mir-302 in these cells induce specific gene silencing effects, and the method comprises the steps of: a) providing: a cell matrix, which exhibits mir_3〇2 a plurality of developmental and differentiation-related genes of the family target, and u) a recombinant nucleic acid composition 29 201009074, which is a transcribed RNA encoding a plurality of non-coding mir_302 miRNAs/shRNAs or homologous derivatives thereof, the plurality of non-coding mir_3〇2 The miRNAs/shRNAs or homologous derivatives thereof are sequentially processed into mature mir-302 miRNAs/s_As or a homologous derivative thereof by an intracellular mechanism, thereby inhibiting the function of the target genes in the cell matrix; b) treating the cell matrix with the recombinant nucleic acid composition, which is treated under conditions which inhibit the function of the target genes in the cell matrix. More preferably, the drug induces a recombinant nucleic acid composition plus a 0-2 vector comprising a recombinant mir-302 family-based quinone group (mir_3〇2s; SEQ.ID.N0.29-SEQ.ID. Any hybridization of the mir-302 shRNA homologous derivative (ie, heterozygous for SEq.id N〇27 and SEQ.ID.NO.28) in the sub-transgenic gene. The cell substrate can express the mir-302 miRNA/shRNA and its underlying gene in any manner, in vitro, ex vivo, and/or in vivo. Thereafter, the cell matrix is transformed or transformed into an ES-like state, which not only presents standard ES fine paper, such as · Oct3/4, SSEA3, SSEA4, Sox2, Nanog, Liang LIN-28, and contains a high degree of desulfonyl group. A genomic body resembling a zygote genome transformed by stem cells. Applying this invention, the inventors have succeeded in achieving mir_3〇2 in seven aspects.

發多能性幹(mirPS)細胞生成:第一,已生成源自相同細胞類型 之兩個同族系的mirPS細胞株;其一係來自人類正常頭髮毛囊 細胞(hHFC) ’而另一者係來自癌症黑色素癌c〇l〇細胞,兩者皆 可體外地形成類胚胎體(圖5A-5C)。第二,已使用該等mirPS 30 201009074 轉錄分子之微型核醣核酸(miRNA)微陣列及北方點墨分析法 (northern blot analyses)證實mir_302家族之表現提高(圖 6A-6B)。第三’已偵測到該標準胚胎幹(ES)細胞標記之表現提 高’包括:Oct3/4、SSEA-3、SSEA-4、Sox2 &N_g(圖 6B、 8B-8C及圖9B)。第四,已觀察到整體之基因體DNA去甲基化, 其類似經過該轉化程序後之接合子基因體的狀態(圖7A_7C)。 第五,該等mirPS細胞之泛基因體之基因表現型式已顯示出與 ❹ 人類ES WA01即)及WA09 (H9)細胞之樣式有超過86%的高 相似度(圖8A及圖9A)。第六,將該等mirps細胞衍生之類胚 胎體(embryoid bodies,EB)體内移植至免疫功能不足之 SCID-beige小鼠中可形成類畸胎瘤組織囊腫,其包含所有三個 胚胎生殖層(外胚層、中胚層及決定性的内胚層)(圖1〇)。然而, 不像畸胎瘤,該等組織囊腫與其周圍組織間形成一極佳且清楚 之邊界。並且,該等囊腫在小鼠中的成長在移植後約2 5週時 參 中止。這看來似乎是有一種自我調節之機制可體内地限制該等 mirPS衍生EB細胞的隨機生長。最後,可將mirPS細胞之分化 導引以形成各種身體系及生殖系組織細胞類型,像是:神經元 前身(neuronal progenitor)、軟骨細胞(ch〇ndr〇Cyte)、纖維母細胞 (fibroblast)及類精原細胞原生細胞(spermat〇g〇nia_like prim()]:dial cell),其係體外地使用各種何爾蒙及/或生長因子來處理(圖 11A-110)。此外,本發明者已成功地使用電穿孔型基因轉殖傳 送來形成該等mir-302所誘發之mirPs細胞株,其避免反轉錄 31 201009074 病毋感染及細胞犬變的風險(圖2A及圖2B)。該等發現提供了 微型核酷核酸(miRNA)誘發幹細胞生成的強力證據,其中 mir-30家族之異位表現不僅能將成人身體細胞及癌症細胞兩者 皆轉化為類ES多能性狀態,而且能在無哺乳細胞培養條件下 維持該等類ES mirPS細胞的再生及多能性。由於mir_3〇2家族 之功此可用91 %-93%之咼成功率來將正常及癌症組織細胞兩 者皆轉化為類ES多能性幹細胞,此新穎發明之該等發現可在 幹細胞及癌症治療兩者中提供有利之應用。 ❹ 由以上發現可知,本發明者亦已習得mir_3〇2不僅能大幅地 抑制細胞週期素相關激酶2(cydin-dependent kinase 2,CDK^、 細胞週期素(cyclin)Dl及D2的表現以減弱細胞增殖及遷移率, 而且能抑制MECP2及MECPl-p66的活動以誘發基因體DNA 的整體去曱基化(圖8B-8C及圖9B)。眾所周知細胞週期素cyciin E相關之CDK2係進入細胞循環§期所必須的,且CDK2之抑 制可導致G1期檢驗點停滯,其中細胞週期素cyclinD1在回應 ❹ DNA損害時可超越G1期停滯。根據此原則,以mk_3〇2來抑 制CDK2及細胞週期素CyCiinDl兩者暗示一項事實:mirPS細 胞具有一極慢的分裂率。如圖5A及圖5C中所示,mirPS細胞 之平均細胞循環係約20-24小時,其遠慢於其身體/癌症對等物 的平均細胞循環(每細胞猶環約4-6小時)。腫瘤/癌症細胞無法 在如此低之細胞增殖率下生存。藉由控制該細胞循環率, mir 302也可影響細胞之存活。因此,此癌症_幹細胞循環轉換 32 201009074 的結果對癌症治療有極大的好處。此外,對]VIECP2及 MECPl-p66活動的抑制與圖7A-7C的結果一致,其顯示將惡性 癌症細胞後天轉化成良性mirPS細胞。可以想見,從病人處所 得之該等mirPS細胞可進一步幫助修補癌症之組織傷害。藉由 抑制基因體印痕(genomic imprinting)及細胞命運決定(cell fate determination)所必要的細胞基因,mir_3〇2家族不僅能將分化體 細胞/癌症細胞轉化為類ES多能性狀態,同時也能在無哺乳細 Ο 胞培養條件下保持此類ES狀態。此外,由於CDK2,細胞週期 素cyclin D1及D2之抑制亦可減弱腫瘤/癌症細胞之該等細胞增 殖及遷移率’mir-302家族扮演了對抗腫瘤細胞生長及形成之強 力腫瘤抑制子的角色(Lin等人,2008b)。mir-302家族之此腫瘤 抑制子特徵可協助生成用於臨床移植、幹細胞及癌症治療上的 無腫瘤誘發多能性幹細胞。根據吾人目前之發現,mir_3〇2誘發 mirPS細胞轉化之機制較該等轉錄因子誘發們細胞之機制更 ® 加安全、清楚及可理解。 總而言之’本新穎發明mir_302家族表現系統提供一安全且 有力的工具以供新穎之類ES多能性幹細胞生成,特別是源自 身體毛髮毛囊細胞之原生培養,因為毛髮較容易取得。由於内 含子miRNA路徑係以多個細胞内監測系統(像是:轉 錄RNA煎接、外體處理及nmd)嚴密調控,因此該路徑較習 知之siRNA/shRNA路徑更加有效及安全_等人,2〇·)。本 發明具有至少五個有益之突破。第一,mir_3〇2表現轉殖基因 33 201009074 可代替在該等先前之iPS方法中所用的所有四個大型轉錄因子 基因’其用來生成僅源自一些病人體細胞之更具同雜的類ES 夕月bf生幹、田胞’這可改善病人之免疫系統的幹細胞純度及相容 性。第二,因為該mir_3〇2練轉瘦基因之總長度係相對地較 小(約千個驗基),與該等IPS方法中之最大值2%相較,本方法-之轉殖基因傳送係極高的(成功率超過91%)。第三,該mirps 細胞之生成及培養完全在無哺乳細胞狀況下進行,避免了哺乳 細胞抗原污染賴險。細,本㈣未使舰絲因,此避免 ❹ 了細胞變異及腫瘤形成的驗。最後,本發财· f穿孔法 代替反轉錄病毒感棘傳送單—秦3G2表現触基因,此避 免了賴反轉錄病毒插入該宿主細胞基因體的風險,其常會引 起插入突變(msertionalmutagenesis)。事實上,mir_3〇2已顯示係 強力之腫瘤抑制子,其甚至可將各種踵瘤/癌症細胞轉化為類 ES多忐性幹細胞(優先權由Lin等人之美國專利申請案第 12/149,725號擁有)。總結來說,該等優點解決了該等邮方法❹ 之二個主要問題’其避免了反轉錄病毒感染、致癌基因突變及 不確定之腫瘤發生的風險。 本發明除了生成類ES多能性細胞株的一般功能外,本發明 之可lib應用進纟包括以下方法:維持無τ^乳細胞及無腫瘤 ES細胞培養狀況、避免癌症細胞分化及轉化、分離純或同源 幹細胞群、成人幹細胞株之體外選殖及純化、體外導引幹細胞 分化成純身體組織’以及制所得之_s多能性幹細胞進行 34 201009074 移植及幹細胞治療的發展。本發明也可用來作為一種工且豆 可研究幹細胞功能及機制,或是可提供用來針對特定用途'而= 變幹細胞之特性的組成物及方法。在其它具體實施例中&:$ 明之該等類ES多能性幹細胞可由正常及癌症體細胞以及哺^ 動物(像是:人類、猴、狗、猶、大鼠及小鼠)之成年幹細胞生 成。 【實施方式】 ® 冑管現將參相圖描述本㈣之特定具體實施例,但 應了解此等具體實施例僅作為實施例之甩,並僅例示性舉 出少數之可能特定具體實施例,其可代表本發明之原理: 應用。熟習本技術者人士顯然應了解各種改變及修正皆屬 P4财請專利範圍巾所進—步定義的本發明之精神、範嗅 及構想内。 本發明提供一種新穎核酸组成物及基因轉殖方法,其 Ο 使用一可誘發重組類微型核醣核酸(miRNA)小髮夾型核醣 核酸(shRNA),將哺乳動物體細胞/癌細胞之基因及行為特 徵轉化成一類胚胎幹(ES)多能性狀態 。換句話說,本發明 提供一種方法,其將至少一個哺乳動物細胞轉化為至少一 個多能性類幹細胞。該方法包含以下數個步驟:提供至少 一個細胞基質’其表現複數個由mir-302所標的之細胞基 因’提供至少一個重組核酸組成物,其可被傳送、轉錄及 處理成在§亥細胞基質中與mirjo〗同源的至少一個基因靜 35 201009074 默效應子;及在由mir_3〇2所標的之該等細胞基因受抑制 的一條件下,以該重組核酸組成物處理該細胞基質。不同 於原先shRNA之設計,本發明之shRNA可包含類似於天 然 mir-302 先驅物(pre-mir-302)的一失配(mismatched)幹臂 (stem-arm)。另外,本發明之shRNA亦可包含一改良之 pre-mir-302 幹環(stem-loop) ’ 如:5,-GCTAAGCCAG GC-3, (SEQ.ID.N0.1)及 5,-GCCTGGCTTA GC-3, (SEQ.ID.N0.2)’其可提供與天然pre_miRNA相同的核輸出 效率’且不會干擾tRNA輸出。換句話說,該基因靜默效 應子包含與SEQ.ID.N0.1序列或SEQ.ID.N0.2序列任一者 同源的一序列。在未受限於任何特定理論下’此種轉化係 應用於一新發現之mir-302-介導基因靜默機制,其可由能 夠表現一 mir-3Q2家族基因群(mir_3〇2s)或一 mir-302-同源 shRNA任一者之一重組轉殖基因的轉染來觸發。 在一較佳具體實施例中,本發明之基因轉殖表現的設 計係基於天然内含子miRNA生體合成之路徑(圖1A)。本 發明者設計了一種新穎核酸組成物,其表現編碼一紅色色 偏螢光蛋白質(RGFP)之一重組轉殖基因,即: 办兄/V^-ieGFP,其包含可經由細胞内RNA剪接及處理機 制來製造内含子miRNA及/或類shRNA基因靜默效應子的 一人造/人工剪接勝任内含子(处及见4〇(Lin等人,2003, 2006a、2006b)。實施例1中描述用來設計及建構該办及 內含子反SpRNAURGFP轉殖基西的操作程序。該SpRNAi 在該GFP基因之先驅轉錄分子(pre-mRNA)内以 201009074Pluripotent stem (mirPS) cell production: First, mirPS cell lines derived from two homologous lines of the same cell type have been generated; one line is derived from human normal hair follicle cells (hHFC) and the other is from Cancer melanoma c〇l〇 cells, both of which can form embryoid bodies in vitro (Fig. 5A-5C). Second, microRNAs (miRNA) microarrays and northern blot analyses of these mirPS 30 201009074 transcriptional molecules have been used to demonstrate improved performance in the mir_302 family (Figures 6A-6B). The third 'has been detected to improve the performance of the standard embryonic stem (ES) cell marker' includes: Oct3/4, SSEA-3, SSEA-4, Sox2 & N_g (Fig. 6B, 8B-8C and Fig. 9B). Fourth, overall genomic DNA demethylation has been observed, similar to the state of the zygote genotype following this transformation procedure (Fig. 7A-7C). Fifth, the gene expression patterns of the miRNAs of these mirPS cells have been shown to have a high similarity to the patterns of the human ES WA01 and WA09 (H9) cells (Fig. 8A and Fig. 9A). Sixth, transplanting these mirps cell-derived embryoid bodies (EB) into SCID-beige mice with insufficient immune function can form teratoma-like cysts, which contain all three embryonic germ layers. (ectoderm, mesoderm, and definitive endoderm) (Fig. 1〇). However, unlike teratomas, these tissue cysts form an excellent and clear boundary with their surrounding tissue. Moreover, the growth of these cysts in mice was stopped at about 25 weeks after transplantation. This appears to be a self-regulating mechanism that limits the random growth of these mirPS-derived EB cells in vivo. Finally, the differentiation of mirPS cells can be guided to form various body systems and germline tissue cell types, such as: neuron progenitor, chondrocytes (Cyte), fibroblasts, and fibroblasts. Spermat〇g〇nia_like prim()]: dial cell), which is treated in vitro using various hormones and/or growth factors (Fig. 11A-110). Furthermore, the present inventors have successfully used electroporation-type gene transfection to form mirPs-induced mirPs cell lines, which avoid the risk of reverse transcription 31 201009074 disease infection and cell canine changes (Fig. 2A and 2B). These findings provide strong evidence of micronuclear nucleic acid (miRNA)-induced stem cell production, in which the ectopic manifestation of the mir-30 family not only converts both adult body cells and cancer cells into an ES-like pluripotent state, but The regeneration and pluripotency of these ES mirPS cells can be maintained in the absence of mammalian cell culture conditions. Since the mir_3〇2 family can use both 91%-93% of the success rate to convert both normal and cancer tissue cells into ES-like pluripotent stem cells, the findings of this novel invention can be treated in stem cells and cancer. Both provide advantageous applications. From the above findings, the present inventors have also learned that mir_3〇2 not only greatly inhibits the expression of cydin-dependent kinase 2 (CDK^, cyclin D1 and D2) to attenuate cells. Proliferation and migration, and inhibiting the activity of MECP2 and MECP1-p66 to induce global demethylation of genomic DNA (Figures 8B-8C and Figure 9B). It is well known that the cyclin cyciin E-related CDK2 line enters the cell cycle § It is necessary, and the inhibition of CDK2 can lead to the arrest of G1 phase checkpoint, in which cyclin D1 can surpass G1 arrest in response to ❹ DNA damage. According to this principle, mk_3〇2 is used to inhibit CDK2 and cyclin CyCiinDl. Both suggest a fact that mirPS cells have a very slow rate of division. As shown in Figures 5A and 5C, the average cell cycle of mirPS cells is about 20-24 hours, which is much slower than their body/cancer equivalence. The average cell cycle of the material (about 4-6 hours per cell). Tumor/cancer cells cannot survive at such a low cell proliferation rate. By controlling the cell cycle rate, mir 302 can also affect cell survival. Thus, the results of this cancer_stem cell cycle conversion 32 201009074 have great benefits for cancer treatment. Furthermore, inhibition of [VIECP2 and MECP1-p66 activity] is consistent with the results of Figures 7A-7C, which show that malignant cancer cells are transformed into acquired Benign mirPS cells. It is conceivable that these mirPS cells obtained from patients can further help repair tissue damage in cancer. Cell genes necessary for inhibition of genomic imprinting and cell fate determination The mir_3〇2 family not only converts differentiated somatic/cancer cells into ES-like pluripotent states, but also maintains such ES status in the absence of mammalian cell culture conditions. In addition, due to CDK2, cyclin cyclin Inhibition of D1 and D2 also attenuates the cell proliferation and migration of tumor/cancer cells. The mir-302 family plays a role as a potent tumor suppressor against tumor cell growth and formation (Lin et al., 2008b). This tumor suppressor characteristic of the 302 family can assist in the generation of tumor-free induced pluripotency for clinical transplantation, stem cell and cancer therapy. According to our current findings, the mechanism by which mir_3〇2 induces mirPS cell transformation is more safe, clear and understandable than the mechanism by which these transcription factors induce cells. In summary, the novel mir_302 family expression system provides a safe and A powerful tool for the generation of novel ES pluripotent stem cells, especially native cultures derived from hair follicle cells of the body, as hair is easier to obtain. Since the intron miRNA pathway is tightly regulated by multiple intracellular monitoring systems (eg, transcribed RNA splicing, exosome processing, and nmd), this pathway is more efficient and safer than the well-known siRNA/shRNA pathways. 2〇·). The present invention has at least five beneficial breakthroughs. First, mir_3〇2 expresses the transgene 33. 201009074 can replace all four large transcription factor genes used in these prior iPS methods, which are used to generate more heterogeneous classes derived only from some patient somatic cells. ES eve month bf dry, field cell 'this can improve the patient's immune system stem cell purity and compatibility. Second, because the total length of the mir_3〇2 training lean gene is relatively small (about a thousand test bases), compared with the maximum 2% of the IPS methods, the method-transfer gene transfer Very high (the success rate is over 91%). Third, the production and culture of the mirps cells are completely carried out without the presence of mammalian cells, thereby avoiding the risk of breast cancer cell antigen contamination. Fine, this (4) does not make the ship silk, this avoids the test of cell variability and tumor formation. Finally, the present Fortune · f perforation method replaces the retroviral thorn to transmit the single-Qin 3G2 gene, which avoids the risk of insertion of the retrovirus into the host cell genome, which often leads to insertional mutations (msertionalmutagenesis). In fact, mir_3〇2 has been shown to be a potent tumor suppressor, which can even convert various tumor/cancer cells into ES-like multi-stomach stem cells (U.S. Patent Application Serial No. 12/149,725, issued to Lin et al. have). In summary, these advantages address the two main problems of the postal method, which avoids the risk of retroviral infection, oncogene mutations, and uncertain tumors. In addition to the general functions of the ES-like pluripotent cell line, the present invention includes the following methods: maintaining the culture state of no τ-free breast cells and tumor-free ES cells, avoiding cancer cell differentiation and transformation, and separating Pure or homologous stem cell population, in vitro selection and purification of adult stem cell lines, differentiation of stem cells into pure body tissues in vitro, and the production of _s pluripotent stem cells for 34 201009074 transplantation and stem cell therapy development. The present invention can also be used as a work and bean to study stem cell functions and mechanisms, or to provide compositions and methods for the specific use of the stem cells. In other embodiments, these types of ES pluripotent stem cells can be used by normal and cancer somatic cells as well as adult stem cells of mammals (such as humans, monkeys, dogs, juveniles, rats, and mice). generate. [Embodiment] ® 胄 现 现 现 现 现 现 现 , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , It may represent the principles of the invention: Application. It will be apparent to those skilled in the art that various changes and modifications are within the spirit, scope, and concept of the invention as defined by the P4 claim patent. The present invention provides a novel nucleic acid composition and gene transfer method, which uses a small micro hairpin type ribonucleic acid (shRNA) which induces recombinant microRNA (miRNA) to transform genes and behaviors of mammalian somatic cells/cancer cells. The characteristics are transformed into a type of embryonic stem (ES) pluripotent state. In other words, the invention provides a method of transforming at least one mammalian cell into at least one pluripotent stem cell. The method comprises the steps of providing at least one cellular matrix 'which exhibits a plurality of cellular genes designated by mir-302 to provide at least one recombinant nucleic acid composition that can be transmitted, transcribed, and processed into a cytoplasmic matrix At least one gene homologous to mirjo is said to be treated with the recombinant nucleic acid composition under conditions in which the cellular genes are inhibited by mir_3〇2. Unlike the design of the original shRNA, the shRNA of the present invention may comprise a mismatched stem-arm similar to the natural mir-302 precursor (pre-mir-302). In addition, the shRNA of the present invention may also comprise a modified pre-mir-302 stem-loop 'e.g., 5,-GCTAAGCCAG GC-3, (SEQ.ID.N0.1) and 5,-GCCTGGCTTA GC -3, (SEQ.ID.N0.2) 'which provides the same nuclear export efficiency as the native pre_miRNA' and does not interfere with tRNA output. In other words, the gene silencing effecter comprises a sequence homologous to either the SEQ.ID.N0.1 sequence or the SEQ.ID.N0.2 sequence. Without being bound by any particular theory, 'this transformation is applied to a newly discovered mir-302-mediated gene silencing mechanism, which can be expressed by a mir-3Q2 family gene group (mir_3〇2s) or a mir- Transfection of one of the 302-homologous shRNAs is triggered by transfection of the recombinant transgene. In a preferred embodiment, the design of the gene transfer performance of the present invention is based on the pathway of natural intron miRNA biosynthesis (Fig. 1A). The present inventors have devised a novel nucleic acid composition which expresses a recombinant transgenic gene encoding a red-colored fluorescent protein (RGFP), namely: broth/V^-ieGFP, which comprises splicing via intracellular RNA and Processing mechanism to create an artificial/artificial splicing competent intron of intron miRNA and/or shRNA-like gene silencing effectors (see Lin et al., 2003, 2006a, 2006b). The design program for designing and constructing the intron and anti-SpRNAURGFP transfectase. The SpRNAi is in the pro-transcriptional molecule (pre-mRNA) of the GFP gene as 201009074

哺乳動物第二型RNA聚合酶(Pol-ΙΙ)共同轉錄,並以RNA 剪接/處理來切開。之後,進一步將所剪接之處理 成成熟之基因靜默效應子,如:天然miRNAs及人造 shRNAs,以使得在標的基因上觸發特定的後轉錄基因靜默 (posttranscriptional gene silencing,PTGS)效應。在此例中, 本發明生成一種重組mir-302s及/或一種與該mir-302s同源 之shRNA。同時,在内含子剪接後,將該为 基因轉錄分子之外顯子鏈接在一起以形成一成熟之及GFP mRNA,用來轉譯成有益於識別所需miRNA/shRNA表現 之一紅色螢光標記蛋白質。在其它實施例中,可使用一些 功能性蛋白質外顯子來代替RGFP以提供額外之基因功 能’如·· .ES 細胞標記基因 Oct4、Sox2、Nanog、LJN-2.8、 SSEA3 反 SSE44。 在另一較佳具體實施例中,本發明提供一種用來將靖 乳動物體細胞/癌細胞轉化為類ES多能性幹細胞之新賴力 法(圖2A及圖2B),其使用一分離之藥物可誘發核酸組治 物,該組成物可被傳送、轉錄及處理成在哺乳動物細胞中 之類mir-302 miRNA/shRNA分子/同源物;因此在該等知 胞中之mir-302所標的之發育及分化相關基因中誘發特定 之基因靜默效應,該方法包含以下步驟:a)提供—細胞基 質,其表現複數個由mir-302家族所標的之發育及分化= 關基因’及b)提供-重組核酸組成物,其能夠轉錄:碼福 數個非編碼mir-302 miRNAs/shRNAs或其同源物的一分雜 RNA,其可藉由細胞内機制依次被處理為成熟之瓜迕如' 37 201009074 miRNAs/shRNAs或其同源物’因此能抑制該等標的基因在 該細胞基質中的功能;c)在該細胞基質中之該等標的基因 功能受抑制的條件下,以該重組核酸組成物處理該細胞基 質。更佳地係,該藥物可誘發重組核酸組成物係一 載體’其包含以一重組mir_3〇2家族基因群(mir_3〇2s ; SEQ.ID.NO.29-SEQ.ID.NO.36之雜合物)或一人造重設 mir-302 shRNA 同源物(即:SEQ.ID.NO.27 及 SEQ.ID.NO.28 之雜合物)任一者插入的办兄似轉殖基因。換句話 說,該重組核酸組成物包含一藥物可誘發之基因表現載 體。此外,該重組核酸組成物可包含一基因表現載體,其 係選自質體、病毒載艟、反轉位子、及其組合組成之群。 另外,重組核酸組成物包含一 或基因表現 載體。該細胞基質可用體外〇 W吵)、離體〇x Wv<9)或體内 (ZW Wvo)任一種方式表現該mir-302 miRNA/shRNA及其標 的基因。實施例2及3描述用於mir-3〇2 miRNA/shRNA建 構及基因轉殖傳送的操作程序。 本發明利用細胞内剪接體、外體及NMD系統之優點 來催化内含子mir_3 〇2 miRNA/shRNA因劑自該 轉殖基因的釋放。在實施例1及圖2A與圖 2B中分別描述,經由在該办题丄·之數個snRNp辨識位上 之細胞内剪接體成分的一序列DNA重組[例如:snRNPs Ul、U2及U4/U6.U5 tri-snRNP所需之結合基序,其包括: 五端剪接位(SEQ.ID.N0.4)、分支點基序(BrP ; SEQ.ID.N0.6)、多嘧啶段(ρΡτ ; SEQ.ID.N0.7 或 38 201009074 SEQ.ID.NO.8)、及三端剪接位(SEQ.ID.NO.5)],用來將合 成snRNP辨識元素組合到一办m4z·内含子以及將此一人 工重組之合併到一分離可誘發RGFP基因以形成 * 該办似及GFi3轉殖基因的方法。此外,該办及A%·進— • 步包含一内含子插入位,其位在用來選殖及表現一重级 mir-302 miRNA/shRNA因劑的五端剪接位及Brp基序之 間。實施例2及圖3B描述一重組mir-302家族基因群 (mir-302s)或一人造重設mir-302 shRNA同源物之建構。實 ❹ 施例3及圖3C描述將該重組mir_302s miRNA/shRNA轉染 成感興趣之細胞,以及成功基因轉殖細胞的筛選。換句話 說,該多能性類幹細胞係選擇性地使用mir-302微型核醣 核酸或Oct3/4作為標記來分離。實施例4-12描述用來評估 將哺乳動物體細胞/癌細胞轉化為類ES多能性細胞的測 驗。圖4至圖11顯示該等測驗之結果。 能表現海mir-302 miRNA威shRNA之一可_發 ❹ 办某因棘殖表現系统的設計及建椹 本發明使用一可誘發内含子miRNA/shRNA 表現系統,即;如2s(圖3A),用以在去氧羥 誘發之控制下並經由細胞内内含子miRNA生體合成之機 制來觸發類mir-302基因靜默效應子的基因轉殖表現(圖 1A)。實施例1及2描述;之建構。當 兄表現載體轉染成感興趣之其細胞後, 其轉錄一 TRE-Pol-II-驅動重組轉殖基因,即 39 201009074 其包含可生成内含子基因靜默效應子之一 人工剪接勝任内含子(圖3A及圖3B),如類髮夾 型miRNA及shRNA。實施例1中顯示藉由序列接合數個 合成DNA序列的基因工程,將办兄似/合併到一紅色色偏 螢光蛋白質基因CRGFP)。办及#乂/包含一先驅miRNA或 shRNA介子(插入位),其可由細胞内RNA剪接及處理機制 釋出’如:剪接體、外顯子及NMD系統之成分,然後觸 發一内含子RNA-介導基因靜默機制。其它可用來攜帶並 生成的RNA轉錄分子包括:hnRNA、mRNA、 rRNA、tRNA、snoRNA、snRNA、smnRNA、病毒 RNA、 pre-microRNA及其先驅物與衍生物。 如實施例1所示,合成並將其合併到一不含内 含子之紅色色偏螢光蛋白質基因(及或rGF尸)中,以形 成*5^及仰?轉殖·基因,其係自紫點海葵(汾物沉沿 cn·印α)之HcRedl色素蛋白(chr〇moproteins)變異而成。由 於所插入之习^^\⑷·中斷了 RGFP之功能性螢光蛋白質結 構,故在一成功轉染之細胞或有機體中於57〇_nm波長下, 吾人可經由該紅色螢光放射的再出現來判定内含子遭移除 及及GF_P-mRNA變異(圖1B)。此重組办允轉殖 基因之建構係基於一先驅訊息RNA(pre_mRNA)中之一剪 接體内含子的天然結構。分及•之主要成分包括數個 snRNP辨齡及麟子,如:在末端中祕精確酶切之五 端及三端剪接位、用於剪接賴之—分支點基序(Brp)、用 於赏接體交互作用之-多射段(ρρτ)、用於連接每一該等 201009074 成分之鏈結子、以及用於所需之内含子插入的一些限制 位。本發明之SpJiNAi包含,由五端往三端方向按結構依 序列出:一五端剪摔位、與類mir_302基因靜默效應子同 源之一内含子介子、一分支點基序(BrP)、_多嘧啶段 (ΡΡΤ)、及一二端剪接位。此外,一些轉譯終止密碼子(丁 codon)可位在接近办之該三端剪接位的鏈接子序列 中〇 ❹ 一般而言’該五端剪接位係包含5,-GTAAGAGKX3, (SEQ.ID.N0.4)或GU(A/G)AGU基序任一者或與其同源的 一核苷酸序列(如:5’-GTAAGAGGAT-3,(SEQ.ID.NO.37)、 5’-GTAAGAGT-3’、5’-GTAGAGT-3,及 5,-GTAAGT-3,),而 該三端剪接位係包含GW犮SCYRCAG (SEQ.ID.N0.5)或 CT(A/G)A(C/T)NG基序任一者或與其同源的一核苷酸序 列(如:5,_GATATCCTGC AG-3,(SEQ.ID.NO.42)、 5 -GGCTGCAG-3,及 5’-CCACAG-3’)。而且,一分支點基 ❿ 序係位在s亥五端剪接位及該三端剪接位之間,其包含與 5’-TACTWAY-3’(SEQ.ID.NO.6)基序同源之同源物,如: 5’-TACTAAC-3,及5,-TACTTAT-3,。該分支點序列之腺核 苷「A」核苷酸在幾乎所有之剪接體内含子中以細胞(2,_5,) 寡腺苷合成酶及剪接體形成一部分之(2,一5,)鏈結套馬索内 含子RNA。此外,一多嘧啶段係位在接近該分支點及該三 端剪接位之間,其包含與5,-(TY)m(C/-)(T)nS(C/-)-3, (SEQ.ID.N0.7)或 5’-(TC)nNCTAG(G/-)-3,(SEQ.ID.N0.8) 基序任一者同源之一高T或C含量的寡核苷酸序列。符號 201009074 二?及「n」表示多個重覆,其⑴更佳地 於1〜3且η的數量等於7〜12。符號「 ^ 可被略過之一枋:y:醯,.L 」保私在該序列中 連接所鏈接子姆酸相係用來 ^有該等内含子成分。根據37 CFR U22中關於 =酸氨基酸序㈣料之符號及格式的準則,符號w ^曰-腺示呤(A)或胸腺♦定(τ)/尿錢(u),符號K係指一 鳥嗓吟⑼或胸腺倾τ)/尿射⑼,符號s係指一胞哺咬 (C)或鳥嗓呤(G),符號γ係指—胞錢(〇或胸腺射⑺/ 尿做⑼,符號R係指一腺嗓呤⑷或鳥嘆吟⑼,及符號 N係指-腺噪呤⑷、胞錢(〇、鳥料⑹或胸腺射⑺/ 尿嘧啶(U)。關於上列所有的剪接體辨識成分,去氧胸苷 (deoxythymidine ’ T)核苷酸可用尿核苷(uridine,切代替。Mammalian type 2 RNA polymerase (Pol-ΙΙ) is co-transcribed and cut by RNA splicing/treatment. The spliced is then further processed into mature gene silencing effectors, such as natural miRNAs and artificial shRNAs, to trigger specific posttranscriptional gene silencing (PTGS) effects on the target gene. In this case, the invention produces a recombinant mir-302s and/or a shRNA homologous to the mir-302s. At the same time, after intron splicing, the exons of the gene transcriptional molecule are linked together to form a mature GFP mRNA, which is used to translate into a red fluorescent marker that is useful for identifying the desired miRNA/shRNA expression. protein. In other embodiments, some functional protein exons may be used in place of RGFP to provide additional gene function ', such as .ES cell marker genes Oct4, Sox2, Nanog, LJN-2.8, SSEA3 anti-SSE44. In another preferred embodiment, the present invention provides a novel method for transforming somatic animal somatic cells/cancer cells into ES-like pluripotent stem cells (Fig. 2A and Fig. 2B) using a separate drug Inducing a nucleic acid composition that can be transmitted, transcribed, and processed into mir-302 miRNA/shRNA molecules/homologues in mammalian cells; thus, the mir-302 is labeled in such cells Inducing specific gene silencing effects in genes involved in development and differentiation, the method comprises the steps of: a) providing a cell matrix that exhibits a plurality of developmental and differentiation genes identified by the mir-302 family; a recombinant nucleic acid composition capable of transcribed: a plurality of non-coding mir-302 miRNAs/shRNAs or a homologous RNA of a homolog thereof, which can be sequentially processed into mature melons by intracellular mechanisms such as ' 37 201009074 miRNAs/shRNAs or homologs thereof' are therefore capable of inhibiting the function of the target gene in the cell matrix; c) consisting of the recombinant nucleic acid under conditions in which the function of the target gene in the cell matrix is inhibited Object processing Cellular substance. More preferably, the drug induces a recombinant nucleic acid composition system-a vector comprising a recombinant mir_3〇2 family gene group (mir_3〇2s; SEQ.ID.NO.29-SEQ.ID.NO.36) Compound or a human-reset mir-302 shRNA homolog (ie, a hybrid of SEQ.ID.NO.27 and SEQ.ID.NO.28) inserted into the co-transgenic gene. In other words, the recombinant nucleic acid composition comprises a drug-evokable gene expression vector. Furthermore, the recombinant nucleic acid composition may comprise a gene expression vector selected from the group consisting of a plastid, a viral vector, an inverted position, and combinations thereof. In addition, the recombinant nucleic acid composition comprises a gene expression vector. The stromal matrix can express the mir-302 miRNA/shRNA and its target gene in any manner in vitro, in vitro, in vitro, or in vivo (ZW Wvo). Examples 2 and 3 describe the procedures used for mir-3〇2 miRNA/shRNA construction and gene transfer delivery. The present invention utilizes the advantages of intracellular splices, exosomes, and NMD systems to catalyze the release of the intron mir_3 〇2 miRNA/shRNA agent from the transgene. In the first embodiment and FIG. 2A and FIG. 2B, a sequence of DNA recombination via intracellular splice components on several snRNp recognition sites in the process is described [eg: snRNPs Ul, U2 and U4/U6 .U5 The binding motif required for tri-snRNP, including: a five-terminal splice site (SEQ.ID.N0.4), a branch point motif (BrP; SEQ.ID.N0.6), a polypyrimidine segment (ρΡτ ; SEQ.ID.N0.7 or 38 201009074 SEQ.ID.NO.8), and the three-terminal splice position (SEQ.ID.NO.5)], used to combine the synthetic snRNP identification elements into one m4z· The inclusion of the subunit and the incorporation of this artificial recombination into a single method that induces the RGFP gene to form a *like and GFi3 transgenic gene. In addition, the program and the A%-in-step include an intron insertion position between the five-terminal splice site and the Brp motif for the selection and expression of a heavy mir-302 miRNA/shRNA agent. . Example 2 and Figure 3B depict the construction of a recombinant mir-302 family gene group (mir-302s) or an artificially reprogrammed mir-302 shRNA homolog. Example 3 and Figure 3C depict the transfection of the recombinant mir_302s miRNA/shRNA into cells of interest, as well as screening of successful gene transfer cells. In other words, the pluripotent stem cell line is selectively isolated using mir-302 miniribonucleic acid or Oct3/4 as a marker. Examples 4-12 describe assays for assessing the conversion of mammalian somatic/cancer cells into ES-like pluripotent cells. Figures 4 through 11 show the results of these tests. One of the miRNA-shRNA expression systems that can express the mir-302 miRNA shRNA can be used to induce an intron miRNA/shRNA expression system, ie; 2s (Fig. 3A) The gene transfer performance of the mir-302-like gene silencing effector was triggered by the mechanism of intracellular intron miRNA biosynthesis under the control of deoxyhydroxyl induction (Fig. 1A). Description of Embodiments 1 and 2; construction. When the expression vector is transfected into the cell of interest, it transcribes a TRE-Pol-II-driven recombinant transgene, 39 201009074, which contains one of the silent effectors of the intron gene that can be generated. Sub-segments (Fig. 3A and Fig. 3B), such as hairpin-like miRNAs and shRNAs. The genetic engineering of joining several synthetic DNA sequences by sequence is shown in Example 1, and the chimeric/merged into a red-colored fluorescent protein gene CRGFP).办和#乂/ contains a precursor miRNA or shRNA meson (insert position), which can be released by intracellular RNA splicing and processing mechanisms such as: splice, exon and NMD system components, and then trigger an intron RNA - mediates the mechanism of gene silencing. Other RNA transcriptional molecules that can be used to carry and generate include: hnRNA, mRNA, rRNA, tRNA, snoRNA, snRNA, smnRNA, viral RNA, pre-microRNA, and precursors and derivatives thereof. As shown in Example 1, the synthesis was combined and incorporated into a red-colored fluorescent protein gene (and or rGF cadaver) containing no introns to form *5^ and cultivating? Transgenic gene, which is a variant of HcRedl pigment protein (chr〇moproteins) from the purple sea anemone (the sputum along the cn·print alpha). Since the inserted formula ^^\(4)· interrupts the functional fluorescent protein structure of RGFP, it can be irradiated by the red fluorescent light at a wavelength of 57〇_nm in a successfully transfected cell or organism. Appear to determine intron removal and GF_P-mRNA variation (Fig. 1B). This recombination allows the construction of a transgenic gene to be based on one of the precursor RNAs (pre_mRNA) to cleave the native structure of the intron. The main components of the fraction and the number include several snRNP ages and linds, such as: the five-terminal and three-terminal splice sites in the terminal end, which are used for splicing and splicing, and the branch point motif (Brp). The interaction of the interacting body - the multi-shot (ρρτ), the link used to connect each of the 201009074 components, and some limit bits for the desired intron insertion. The SpJiNAi of the present invention comprises: a five-terminal to three-terminal direction according to a structure: a five-terminal cut and a homologous one of the mir_302-like gene silencing effector, a branch point motif (BrP) , _ polypyrimidine segment (ΡΡΤ), and a two-terminal splice site. In addition, some translation stop codons (D. codon) can be located in the linker sequence close to the three-terminal splice site. In general, the five-terminal splice site contains 5,-GTAAGAGKX3, (SEQ.ID. Any one of the N0.4) or GU (A/G) AGU motifs or a nucleotide sequence homologous thereto (eg, 5'-GTAAGAGGAT-3, (SEQ.ID.NO.37), 5'- GTAAGAGT-3', 5'-GTAGAGT-3, and 5,-GTAAGT-3,), and the three-terminal splice site contains GW犮SCYRCAG (SEQ.ID.N0.5) or CT(A/G)A (C/T) a nucleotide sequence of either or a homologous sequence of the NG motif (eg, 5, _GATATCCTGC AG-3, (SEQ. ID. NO. 42), 5 - GGCTGCAG-3, and 5' -CCACAG-3'). Moreover, a branching point motif is located between the sig-terminal splicing site and the three-terminal splicing site, and comprises a homologous sequence to the 5'-TACTWAY-3' (SEQ.ID.NO.6) motif. Homologs such as: 5'-TACTAAC-3, and 5,-TACTTAT-3,. The adenosine "A" nucleotide of the branch point sequence forms part of the cell (2,_5,) oligoadenylate synthetase and the splice form in almost all of the spliced introns (2, a 5,) Linked to the horseshoe intron RNA. In addition, a polypyrimidine moiety is located near the branch point and the three-terminal splice site, and comprises 5,-(TY)m(C/-)(T)nS(C/-)-3, ( SEQ.ID.N0.7) or 5'-(TC)nNCTAG(G/-)-3, (SEQ.ID.N0.8) One of the homologs of one of the homologs of high T or C content Glycosidic acid sequence. Symbol 201009074 Two? And "n" indicates a plurality of repetitions, and (1) is more preferably 1 to 3 and the number of η is equal to 7 to 12. The symbol "^ can be skipped by one 枋: y: 醯, .L". Privacy is used in this sequence to connect the linked sub-acid phase system to have such intron components. According to the criteria for the symbol and format of the acid amino acid sequence (four) in 37 CFR U22, the symbol w ^ 曰 - gland 呤 (A) or thymus ♦ (τ) / urine money (u), symbol K refers to a bird嗓吟 (9) or thymus tilting τ) / urinary ejaculation (9), symbol s refers to one cell bite (C) or guanine (G), symbol γ refers to - cell money (〇 or thymus (7) / urine (9), The symbol R refers to an adenine (4) or a bird sigh (9), and the symbol N refers to - glandular noise (4), cell money (〇, bird (6) or thymus (7) / uracil (U). The splice identification component, deoxythymidine (T) nucleotides can be replaced with uridine (uridine).

為測試一經剪接办凡/VA.介子之功能,可將各種基因靜 默效應子建構選殖至該重組办轉殖基因之内 含子插入位中。該内含子插入位包含多個限制及選殖位, 其可藉由限制酶來辨識’該等限制酶係選自乂加π、、In order to test the function of the VA. meson, a variety of gene silencing effectors can be constructed and inserted into the intron insertion site of the recombination gene. The intron insertion site comprises a plurality of restriction and selection sites, which can be identified by restriction enzymes. The restriction enzymes are selected from the group consisting of 乂 plus π,

AflII/III、Agel、Apal/LI、Asel、Asp718I、BamHI、Bbel、 BclI/II、BgUI、BsmI、Bspl20I、BspHI/LUllI/1201、AflII/III, Agel, Apal/LI, Asel, Asp718I, BamHI, Bbel, BclI/II, BgUI, BsmI, Bspl20I, BspHI/LUllI/1201

BsrI/BI/GI、BssHII/SI、BstBI/Ul/XI、CM、Csp6I、Dpnl、 Dral/II、EagI、Ecll36II、EcoRI/RlI/47III、Ehel、FspI、BsrI/BI/GI, BssHII/SI, BstBI/Ul/XI, CM, Csp6I, Dpnl, Dral/II, EagI, Ecll36II, EcoRI/RlI/47III, Ehel, FspI,

Haelll、Hhal、HinPI、Hindlll、Hinf!、Hpal/II、KasI、Kpnl、 Maell/III、Mfel、Mlul、MscI、Msel、Nael、Narl、Ncol、Haelll, Hhal, HinPI, Hindlll, Hinf!, Hpal/II, KasI, Kpnl, Maell/III, Mfel, Mlul, MscI, Msel, Nael, Narl, Ncol,

Ndel、NgoMI、Notl、Nrul、Nsil、Pmll、PpulOI、PstI、 PvuI/II、Rsal、SacI/II、Sail、Sau3AI、Smal、SnaBI、SphI、 42 201009074Ndel, NgoMI, Notl, Nrul, Nsil, Pmll, PpulOI, PstI, PvuI/II, Rsal, SacI/II, Sail, Sau3AI, Smal, SnaBI, SphI, 42 201009074

SspI、StuI、Tail、TaqI、Xbal、xhoI、XmaI 槐後內切离及 其組合組成之群。該等内含子介子係DNA模板(dna template),其可轉錄成高度二級結構,該等結構係選自: 套馬索型 RNA(lariat-form RNA)、短臨時 RNA(stRNA)、反 ' 義⑽八、小干擾RNA(siRNA)、雙股RNA(dsRNA)、短髮 夾型RNA(shRNA)、微型核醣核酸(miRNA)、Piwi交互作 用RNA(piRNA)、核醣酵素、及同義或反義構造形態 (conformation)任一種之其先驅物與衍生物、或以上兩者、 © 及其組合組成之群。 為了方便基因轉殖傳送進感興趣之細胞或有機體,本 發明之轉殖基因較佳地係合併在一表現勝 任載體中,其係選自DNA轉殖基因、質體、反轉位子、 轉位子、跳躍基因、病毒載體、及其組合組成之群。所得 之此一基因轉殖表現載體較佳地係以一高效率基因傳送方 法引入該細胞或有機體中’該基因傳送方法係選自化學/ ❹ 微脂體轉染法、電穿孔法、轉位子介導DNA重組、跳躍 基因插入、病毒感染、顯微注射、基因搶穿透、及其組合 組成之群。換句話說’該重組核酸組成物係以一基因傳送 方法引進該哺乳動物細胞中’該基因傳送方法係選自微脂SspI, StuI, Tail, TaqI, Xbal, xhoI, XmaI, post-incision and combinations thereof. The intron meson DNA template, which can be transcribed into a highly secondary structure selected from the group consisting of: lariat-form RNA, short temporary RNA (stRNA), anti- ' (10) VIII, small interfering RNA (siRNA), double-stranded RNA (dsRNA), short hairpin RNA (shRNA), microRNA (miRNA), Piwi interaction RNA (piRNA), ribozyme, and synonymous or anti Any of a group of precursors and derivatives, or both, and combinations thereof. In order to facilitate gene transfer into a cell or organism of interest, the transgenic gene of the present invention is preferably ligated into a competent vector selected from the group consisting of a DNA transgene, a plastid, an inverted position, and a transposon. , a group of jumping genes, viral vectors, and combinations thereof. The resulting gene transfer expression vector is preferably introduced into the cell or organism by a high efficiency gene delivery method. The gene delivery method is selected from the group consisting of chemical/❹ liposome transfection, electroporation, transposition Mediating DNA recombination, skip gene insertion, viral infection, microinjection, gene grab penetration, and combinations thereof. In other words, the recombinant nucleic acid composition is introduced into the mammalian cell by a gene delivery method. The gene delivery method is selected from the group consisting of microlipids.

體轉染(liposomal transfection)、化學轉染(chemical transfection)、基因轉殖 DNA 重組(transgenic DNA recombination)、病毒感染(viral infection)、轉位子插入 (transposon insertion)、跳躍基因插入(jumping gene insertion)、顯微注射(micro-injection)、電穿孔法 43 201009074 (electroporation)、基因槍穿透(gene-gun penetration)、及其 組合組成之群。該載體可進一步包含至少一個病毒、 Pol-II、或Pol-III啟動子、或其組合’用以表現該 尸轉殖基因。更佳地係,以電穿孔法將該轉殖 基因合併至一 7^-0«/0#載體中並基因轉殖地傳送入標的 細胞内,如實施例3所示。此外,該載體可包含:用以增 加真核細胞之轉譯效率之一 Kozak —致性轉譯初始位 (Kozak consensus translation initiation site)、該 办兄似轉殖基因下游之多個SV40聚腺苷酸化訊息 (SV40polyadenylation signal)、用來在原核生物細胞内繁殖 之一 pUC 複製來源(pUC origin of replication)、用來將該 建構合併在該載體中之至少兩個限制位、用 來在表現sy4〇 τ抗原之哺乳動物細胞中複製的一任選 s V 4 0複製來源、以及用來在複製勝任原核生物細胞中表現 一抗生素抗藥性基因的一任選SV40早熟啟動子(SV40 early promoter)。換句話說,該重組核酸組成物係選自一四 環黴素反應元素、一病毒或第二型^·Α聚合酶(p〇l_H)啟 動子、或以上兩者、一 Kozak —致性轉譯起始位、聚腺苷 酸化訊息、複數個限制/選殖位、及其組合組成之群。此外, 該重組核酸組成物顧自—pUC複製來源、时在複製勝 任原核生物細胞中表現至少—個抗生素抗藥性基因的一 SV40早熟啟動子、用來在哺乳動物細胞中複製的 複製麵、及該合_謂。雜生她藥性基因 之表現可絲作為-選擇標記,其可时分離具該基因轉 201009074 殖表現的成功選殖細胞。該等抗生素係選自盤尼西林 G(penicillin G)、安比西林(ampicillin)、新黴素(neomyCin)、 巴龍黴素(paromycin)、康黴素(kanamycin)、鍵黴素 (streptomycin)、紅黴素(erythromycin)、斯派克黴素 • (sPectromyein)、霍火黴素(phophomycin)、四環黴素 (tetracycline)、利福黴素(rifapicin)、兩性黴素 B(amphotericin B)、健他黴素(gentamycin)、氯黴素(chloramphenicol)、頭 孢黴素(cephalothin)、泰黴素(tylosin)、及其組合組成之群。 已在一丁呂〇沈>2-〇八1<4:118八也?)品種斑馬魚中體内地 測試使用該轉殖基因之内含子 miRNA/shRNA的表現策略,以針對其綠色五基因表 現來標的。如實施例6及圖1B中所示,表現一人工重組 anti-五GFP pre_miRNA介子(第四列)之一办厦及質 體的微脂體轉染,在上顯示一極強之基因靜默效應 (> 8 0%基因減弱(gene knockdown)),然而在下列指出之自 φ 左列至右列的該等介子中並未觀察到其它靜默效應:(1)空 白載體控制(Ctl) ; (2)標的之pre_miRNA介子 (mock),(3)不具髮夾型環狀結構之反義介子(姐廿); 及(5)反向之pre-miRNA序列,其與該anti_£(^pp pre-miRNA完全互補⑽R*)。並且,在非標的(〇ff_target) 基因上並未彳貞測到任何效應,如:標記rgfp及管家 (house-keeping)肌動蛋白(p_actin)基因,其暗示此種内含子 miRNA-介導基因靜默具有高度標的專一性 (target-specific)。另外’藉由北方點墨分析法(圖1β,右方), 45 201009074 吾人觀察到小型内含子基因靜默效應子之生成僅源自該設 計之及GFi3基因轉錄分子(左列),而非源自不含内 含子之的一天然轉錄分子(中間列)或不含功能性五 端笏接位之一缺陷性SpRNAi-RGFP建構的一轉錄分子(右 列),而經剪接之外顯子係鏈接在一起以形成用來轉 譯該標記紅色螢光蛋白質的成熟RNA。 一重组mir-302家族基因群及一類mir_302 shRNA同源物 的設計及建構 ❿ 因為一些天然pre-miRNA的髮夾型環狀結構太大及/ 或太複雜,無法配合該汾4ζ·-及GFP轉殖基因,所以本發 明者設計了一修飾後 tRNAmet環(即: 5’-(A/U)UCCAAGGGGG-3’)(SEQ.ID.NO.43)來代替該等 天然pre-miRNA環。該tRNAmet環顯示能如同天然miRNAs 般經由相同之Ran-GTP及Exportin-5傳送機制有效地促進 將人造重設之miRNA自細胞核輸出至細胞質(Lin等人, 2005)。有利地係’本發明目前使用一對人造改良之 〇 pre-mir-302 環,包括:5’_GCTAAGCCAG GC-3, (SEQ.ID.NO. 1) 及 5,-GCCTGGCTTA GC-35 (SEQ.ID.NO.2),其提供與天然pre-miRNAs相同的核輸出 效率,且不會干擾tRNA輸出。並且,此改良加強了 mir-302a-mir-302a*及 mir-302c-mir-302c*雙鍵體之形成, 其可穩定mir-302家族的整體功能。該等新穎pre_miRNA 環之設計係以mir-302b/mir-302a之tRNAmet環及短幹環的 46 201009074 結合來修飾,其高度地表現在胚胎幹細胞中而非在其它分 化組織細胞中。因此,在mir-302家族中使用該等人造/人 工pre-miRNA環將不會干擾我們身體中的天然miRNA路 徑,因而細胞毒性較少且更加安全。 該等 mir-302a、mir-302b、mir-302c 及 mir-3O2d 之成 熟序列分別為’-UAAGUGCUUC CAUGUUUUGG UGA-3, (SEQ.ID.NO. 10)、5,-UAAGUGCUUC cauguuuuag UAG-3’ (SEQ.ID.NO.il) 、 5,-UAAGUGCUUC ® CAUGUUUCAG UGG-3’ (SEQ.ID.NO.12)、及 5’-UAAGUGCUUC CAUGUUUGAG \JG\J-3' (SEQ.ID.NO.13)。該等mir-3〇2家族基因靜默效應子在其前 十七個核苷酸中分享一高度一致性的五端區域(1〇〇%同源 性),其與 5’_UAAGUGCUUC CAUGUUU-3,(SEQ.ID.N0.3) 完全相同。換句話說,該基因靜默效應子包含與 SEQ.ID.N0.3同源或互補、或兩者皆是的一序列。在設計 〇 與5亥荨mir-302序列同源的序列中,胸腺喊啶(丁)可用來代 替尿嘧啶(U)。 如實施例2中所述,家族mir_3〇2 pre_miRNAs之基因 群係以合成mir-302同源物之雜合及鏈結/接合來形成,其 在一五端至三端方向包含四個部分:mir_3〇2a、㈤卜川沘、 mine及mir-3〇2d pre_m_A(圖3B)。所有該等人造重 設之mir-302 miRNA/shRNA同源物在其前十七個核普酸 中/、有70王相同的五端[例如:5,_uaagugcuuc 201009074Liposomemal transfection, chemical transfection, transgenic DNA recombination, viral infection, transposon insertion, jumping gene insertion , micro-injection, electroporation 43 201009074 (electroporation), gene-gun penetration, and a combination thereof. The vector may further comprise at least one virus, Pol-II, or Pol-III promoter, or a combination thereof' to express the cadaveric gene. More preferably, the transgenic gene is combined into a 7^-0«/0# vector by electroporation and the gene is transfected into the target cells as shown in Example 3. In addition, the vector may comprise: a Kozak consensus translation initiation site for increasing the translation efficiency of the eukaryotic cell, and a plurality of SV40 polyadenylation messages downstream of the coding-like gene. (SV40 polyadenylation signal), a pUC origin of replication for propagation in prokaryotic cells, at least two restriction positions for merging the construct in the vector, for expressing sy4〇τ antigen An optional sV40 replication source for replication in mammalian cells, and an optional SV40 early promoter for expression of an antibiotic resistance gene in a competent prokaryotic cell. In other words, the recombinant nucleic acid composition is selected from the group consisting of a tetracycline reaction element, a virus or a second type of polymerase (p〇l_H) promoter, or both, and a Kozak-translated method. A group consisting of an onset, a polyadenylation message, a plurality of restriction/selection sites, and combinations thereof. In addition, the recombinant nucleic acid composition is derived from a source of pUC replication, an SV40 precocious promoter which exhibits at least one antibiotic resistance gene in a competent prokaryotic cell, a replication surface for replication in mammalian cells, and The combination is _. The performance of the miscellaneous her drug gene can be used as a -selectable marker, which can be used to isolate successful colonized cells with the gene transfer to 201009074. These antibiotics are selected from penicillin G, ampicillin, neomy Cin, paromycin, kanamycin, streptomycin, and red mold. Erythromycin, sPectromyein, phophomycin, tetracycline, rifapicin, amphotericin B, gentamicin A group consisting of gentamycin, chloramphenicol, cephalothin, tylosin, and combinations thereof. The performance strategy of using the intron miRNA/shRNA of the transgenic gene has been tested in vivo in a cultivar zebrafish in a Dinglu 〇>2-〇8 1<4:118 八??) Gene expression is marked. As shown in Example 6 and Figure 1B, one of the artificially recombinant anti-five GFP pre-miRNA mesons (fourth column) was transfected with a liposome, which showed a very strong gene silencing effect. (> 80% gene knockdown), however, no other silent effects were observed in the above-mentioned mesons from φ left column to right column: (1) blank vector control (Ctl); 2) the target pre_miRNA meson (mock), (3) the antisense meson (sister) without a hairpin-type loop structure; and (5) the reverse pre-miRNA sequence, which is associated with the anti_£(^pp pre - miRNA is fully complementary (10) R*). Moreover, no effects were detected on the non-target (〇ff_target) gene, such as the marker rgfp and the house-keeping actin (p_actin) gene, suggesting that this intron miRNA-mediated Gene silencing has a high degree of target-specificity. In addition, by Northern blotting analysis (Fig. 1β, right), 45 201009074, we observed that the generation of small intron gene silencing effectors originated only from the design and GFi3 gene transcription molecules (left column), not From a natural transcription molecule containing no introns (middle column) or a transcriptional molecule (right column) constructed without defective SpRNAi-RGFP, which is one of the functional five-terminal 笏 junctions, The lines are linked together to form mature RNA for translating the labeled red fluorescent protein. Design and construction of a recombinant mir-302 family gene group and a class of mir_302 shRNA homologs ❿ Because some natural pre-miRNA hairpin-type loop structures are too large and/or too complex to match the 汾4ζ·- and GFP The gene was transduced, so the inventors designed a modified tRNAmet loop (i.e., 5'-(A/U)UCCAAGGGGG-3') (SEQ. ID. NO. 43) in place of the natural pre-miRNA loops. This tRNAmet loop has been shown to efficiently promote the export of artificially reprogrammed miRNAs from the nucleus to the cytoplasm via the same Ran-GTP and Exportin-5 delivery mechanisms as native miRNAs (Lin et al., 2005). Advantageously, the present invention currently employs a pair of artificially modified 〇pre-mir-302 rings, including: 5'_GCTAAGCCAG GC-3, (SEQ. ID. NO. 1) and 5, -GCCTGGCTTA GC-35 (SEQ. ID.NO.2), which provides the same nuclear export efficiency as native pre-miRNAs without interfering with tRNA output. Moreover, this modification enhances the formation of mir-302a-mir-302a* and mir-302c-mir-302c* double bonds, which stabilize the overall function of the mir-302 family. The design of these novel pre-miRNA loops is modified by the binding of the mir-302b/mir-302a tRNAmet loop and the short stem loop 46 201009074, which is highly expressed in embryonic stem cells but not in other differentiated tissue cells. Therefore, the use of these artificial/artificial pre-miRNA loops in the mir-302 family will not interfere with the natural miRNA pathways in our body and is therefore less cytotoxic and safer. The mature sequences of these mir-302a, mir-302b, mir-302c and mir-3O2d are '-UAAGUGCUUC CAUGUUUUGG UGA-3, (SEQ.ID.NO. 10), 5,-UAAGUGCUUC cauguuuuag UAG-3' ( SEQ.ID.NO.il), 5,-UAAGUGCUUC ® CAUGUUUCAG UGG-3' (SEQ.ID.NO.12), and 5'-UAAGUGCUUC CAUGUUUGAG \JG\J-3' (SEQ.ID.NO.13 ). These mir-3〇2 family gene silencing effectors share a highly consistent five-terminal region (1% homology) in the first seventeen nucleotides, which is associated with 5'_UAAGUGCUUC CAUGUUU-3, (SEQ.ID.N0.3) is identical. In other words, the gene silencing effector comprises a sequence homologous or complementary to SEQ. ID. N0.3, or both. In the sequence designed to be homologous to the 5 荨 mir-302 sequence, the thymus shunt (丁) can be used to replace uracil (U). As described in Example 2, the gene group of the family mir_3〇2 pre_miRNAs is formed by the hybridization and linkage/joining of synthetic mir-302 homologs, which consists of four parts in a five-terminal to three-terminal direction: Mir_3〇2a, (5) 卜川沘, mine and mir-3〇2d pre_m_A (Fig. 3B). All of these artificially-reset mir-302 miRNA/shRNA homologues are in the first seventeen nucleotides/, with the same five-terminal end of 70 kings [eg: 5, _uaagugcuuc 201009074

CAUGUUU-3’(SEQ.ID.N0.3)]。在其它實施例中,吾人可 使用一人造重設之mir-302 shRNA來代替用於内含子插入 的 mir-302 pre-miRNA 基因群。該重設之 mir-302 shRNA 係以合成同義 mir-302 家族(mir-302s-sense), 5,-GTCCGATCGT CATAAGTGCT TCCATGTTTT ' AGTGTGCTAA GCCAGGCACA CTAAAACATG GAAGCACTTA TCGACGCGTC AT-3,(SEQ.ID.NO.27)及 反義 mir-302 家族(mir-302s-antisense),5,-ATGACGCGTC GATAAGTGCT TCCATGTTTT AGTGTGCCTG ❹CAUGUUU-3' (SEQ. ID. N0.3)]. In other embodiments, an artificially reprogrammed mir-302 shRNA can be used in place of the mir-302 pre-miRNA gene population for intron insertion. The reset mir-302 shRNA is synthesized by synthesizing the synonymous mir-302 family (mir-302s-sense), 5,-GTCCGATCGT CATAAGTGCT TCCATGTTTT 'AGTGTGCTAA GCCAGGCACA CTAAAACATG GAAGCACTTA TCGACGCGTC AT-3, (SEQ.ID.NO.27) and Antisense mir-302 family (mir-302s-antisense), 5,-ATGACGCGTC GATAAGTGCT TCCATGTTTT AGTGTGCCTG ❹

GCTTAGCACA CTAAAACATG GAAGCACTTA TGACGATCGG AC-3’(SEQ,ID.N0.28)之雜合來形成。此 重設之mir-302 shRNA對所有天然之mir-302成員分享超 過91%的同源性,並標的人類中相同的mir-30>標的基因。 將可諉發mir-302-表現Sp及凡棘殖某因德送推人 類正當頭髮毛囊(hHFC)及癌症黑色素癌Colo細胞之屜峰 触中 ❹ 由於該重組轉殖基因之内含子插入位 在其五端及三端分別以一 PvwJ及一 M/w/限制/選殖位為侧 翼,故該原生介子可簡單地以各種pre-miRNA/shRNA介子 (例如:mir-302pre-miRNA/shRNA)加以移除及取代,其具 有配合該等/W及一 M/wJ限制位的相配點著端。藉由針 對各種基因轉錄分子來改變該等内含子的介子,該内含子 miRNA/shRNA表現系統可用作體外及體内地誘發標的基 48 201009074 因靜默的一有力工具。在實驗中,首先將該mir-302 pre-miRNA/shRNA插入該办及漏/jGF/5轉殖基因中,然 後將該轉殖基因合併到該載體之該選殖位 (即·•一 XhoI-C!aI位)內,西而形氟一 pTet-On-tTS-miR302s 轉殖基因表現載體(圖3A)。其後,將該 載體(10_3〇 pg)與該等宿主細胞(2〇〇_2〇〇〇)在一低滲性PH 緩衝液(400 μΐ; Eppendorf)中混合,且在400-450伏特下實 行電穿孔法100微秒(psec)以將該轉殖基因傳送進該等宿 主細胞基因體内。在72小時後分離並收集基因轉殖成功之 細胞’使用FACS流式細胞計數儀經anti_RGFP及 anti-〇ct3/4單株抗體來篩選(圖3C)。此新穎mir_3〇2s基因 轉殖方法的成功率經測量超過91 %。因為該办幻ζ·_及 轉殖基因係以一同源區域為侧翼而重組插入至不包含基因 的一特定基因體位(圖4Α),故該办及见4/_及轉殖基因 所編碼之mir-302 miRNA/shRNA效應子之表現全依照該 ρΤΆ.仍載體之77^-CMF啟動子的Dox誘發活化而 定。該〆載體包含一 CMV驅動之仍抑制劑基 因,以去活化該轉殖基因之77?£:_CMF啟動子。當去氧羥 (Dox)存在時’ tTS之功能被Dox抑制住,因此表現出該 及GFP轉殖基因及其編碼mir_3〇2家族(圖4b)。 49 201009074 在一不含哺乳細胞培巷條件下將人類正常及癌症艟細胞轉 化成一海ES狀態 如實施例1-2及圖3A-3B所述,吾人已設計並建構一 - 可誘發轉殖基因,其編碼一人造鏈結之 _ mir-302a-mir-302b-mir-302c-mir-302d (mir-302s) pre-miRNA或一重設之類mir_302 shRNA[例如:一類髮夾 型序列,包含 5’-UAAGUGCUUC CAUGUUUUAGUGU-3’ (SEQ.ID.N0.9)],然後測試該轉殖基因以用來靜默各種體 _ 細胞及癌細胞(如人類正常頭髮毛囊細胞(hHF C)及癌症黑 色素癌Colo細胞)中之發育及分化相關標的基因。 依循圖2A及圖2B中所示之程序,本發明者分別將該 重組mir-302s pre-miRNA基因轉殖地傳送入hHFC細胞 内’以及將該重設之mir-302 shRNA同源物(SEQ.ID.N0.9) 基因轉殖地傳送入Colo細胞内。換句話說,該基因靜默效 應子係一重組類髮夾型RNA,其包括與SEQ.ID.N0.9同源 的一序列。在以Dox誘發異位mir-302表現後,所有該等 〇 mir-302轉導/誘發多能性幹(mirPS)細胞株的形態從梭形 (spindle)轉形為圓形(roun(j)(下方圖),這表示其不只可能 會喪失遷移之能力’亦可能具有一類似ES細胞生長之極 慢的細胞再生率(圖5A)。比較DNA含量與一細胞週期階 段之流式細胞儀分析(上方圖;實施例7)進一步顯示:在 mirPS細胞之有絲分裂細胞群體中有超過67%的減少,這 暗示該等細胞增殖率遠較其身體/癌症來源之增殖率為 50 201009074 低。平均來說,該等細胞群體在一不含哺乳細胞之培養條 件下母20-24小時分裂一次’其包含在37°c及5% C〇2下 之DMEM/F12或RPMI 1640/B27培養液,其補充成分為 10%炭吸附(charcoal-stripped)胎牛血清(FBS)、4 mML邀 醯胺(ghtamine)、1 mM 丙酮酸鈉(sodium Pyruvate)、5 ng/ml 活化素(activin)、5 ng/ml Noggin 蛋白、3 ng/mi bFGF、以 及 0·5 μΜ Y-27632 與 0.5 μΜ GSK-3 抑制劑 xv 之一等量 混合物(即:mirPS細胞培養基)。換句話說,可在DMEM/F12 〇 或RPMI 1640/B27培養液中不含哺乳細胞地培養該等多能 性類幹細胞,該培養液的補充成分為1〇%炭吸附FBS、4 mM L-麵醯胺、1 mM丙酮酸納、5 ng/ml活化素、3 ng/mlA heterozygosity of GCTTAGCACA CTAAAACATG GAAGCACTTA TGACGATCGG AC-3' (SEQ, ID. N0.28) was formed. This reset mir-302 shRNA shares more than 91% homology to all native mir-302 members, and the same mir-30> target gene in humans. Will be able to express mir-302-expressing Sp and any of the stagnation of a certain indigo human hair hair follicle (hHFC) and cancer melanoma Colo cells in the peak of the touch ❹ due to the intron insertion of the recombinant gene The five-terminal and three-terminal are flanked by a PvwJ and a M/w/restriction/selection, respectively, so the native meson can be simply a variety of pre-miRNA/shRNA mesons (eg, mir-302pre-miRNA/shRNA) Removed and replaced, it has a matching point that matches the /W and an M/wJ limit. By changing the mesons of these introns for a variety of gene transcriptional molecules, the intron miRNA/shRNA expression system can be used as an inducing target in vitro and in vivo 48 201009074 A powerful tool for silence. In the experiment, the mir-302 pre-miRNA/shRNA is first inserted into the transcript and the drain/jGF/5 transgene, and then the transgene is incorporated into the selection of the vector (ie, • XhoI) In the -C!aI position, the western-like fluoro-pTet-On-tTS-miR302s transgene expression vector (Fig. 3A). Thereafter, the vector (10_3〇pg) was mixed with the host cells (2〇〇2〇〇〇) in a hypotonic pH buffer (400 μΐ; Eppendorf) at 400-450 volts. An electroporation method of 100 microseconds (psec) was performed to deliver the transgene into the host cell gene. Cells successfully isolated and collected after 72 hours were screened by anti-RGFP and anti-〇ct3/4 monoclonal antibodies using a FACS flow cytometer (Fig. 3C). The success rate of this novel mir_3〇2s gene transfer method was measured over 91%. Because the scorpion _ _ and the transgenic gene are flanked by a homologous region and recombined into a specific gene position that does not contain the gene (Fig. 4Α), the program and the 4/_ and the coding gene are encoded. The expression of the mir-302 miRNA/shRNA effector is based on the Dox-induced activation of the 77^-CMF promoter of the vector. The cockroach vector contains a CMV-driven still inhibitor gene to deactivate the 77; £: _CMF promoter of the transgene. The function of tTS was inhibited by Dox when deoxyhydroxyl (Dox) was present, thus exhibiting the GFP transgene and its coding mir_3〇2 family (Fig. 4b). 49 201009074 Transformation of human normal and cancer sputum cells into a sea ES state in a cell containing no lactating cells As described in Example 1-2 and Figures 3A-3B, we have designed and constructed a priming gene. , which encodes an artificial link _ mir-302a-mir-302b-mir-302c-mir-302d (mir-302s) pre-miRNA or a reset mir_302 shRNA [eg, a type of hairpin sequence containing 5 '-UAAGUGCUUC CAUGUUUUAGUGU-3' (SEQ.ID.N0.9)], and then tested the transgenic gene to silence various body cells and cancer cells (such as human normal hair follicle cells (hHF C) and cancer melanoma) Target genes related to development and differentiation in Colo cells). Following the procedures shown in Figures 2A and 2B, the inventors separately transfected the recombinant mir-302s pre-miRNA gene into hHFC cells' and the reset mir-302 shRNA homolog (SEQ .ID.N0.9) Genes are transferred into Colo cells. In other words, the gene silencing effect is a recombinant hairpin RNA comprising a sequence homologous to SEQ. ID. N0.9. After the expression of ectopic mir-302 induced by Dox, the morphology of all such 〇mir-302 transduced/induced pluripotent stem (mirPS) cell lines was transformed from spindle to round (roun(j) (Bottom), which means that it is not only likely to lose the ability to migrate 'may also have a very slow cell regeneration rate similar to ES cell growth (Figure 5A). Comparison of DNA content and flow cytometry analysis at a cell cycle stage (Overview; Example 7) further shows that there is a 67% reduction in the mitotic cell population of mirPS cells, suggesting that these cell proliferation rates are much lower than their body/cancer source proliferation rate of 50 201009074. Said cell populations are split once every 20-24 hours in a culture condition without mammalian cells, which comprises DMEM/F12 or RPMI 1640/B27 medium at 37 ° C and 5% C〇2, Supplementary ingredients are 10% charcoal-stripped fetal bovine serum (FBS), 4 mML ghtamine, 1 mM sodium pyruvate, 5 ng/ml activin, 5 ng /ml Noggin protein, 3 ng/mi bFGF, and 0·5 μΜ Y-27632 and 0.5 μΜ GSK-3 One of the preparations xv is an equal mixture (ie: mirPS cell culture medium). In other words, the pluripotent stem cells can be cultured in the DMEM/F12 〇 or RPMI 1640/B27 culture medium without the mammalian cells, the culture solution The supplement is 1% carbon adsorption FBS, 4 mM L-face decylamine, 1 mM sodium pyruvate, 5 ng/ml activin, 3 ng/ml

bFGF、以及 0.5 μΜ Y-27632 與 0.5 μΜ GSK-3 抑制劑 XV 之一等量混合物。.流式細码計數儀圓表之第一(左)及第二 (右)波峰表示在該整個測試受之細胞群體中休眠之G0/G1 及有絲分裂Μ期之細胞群體的含量。在該πήΓ-3023轉染 後,該有絲分裂細胞群體(Μ期)在hHFC中自41%減少到 翁 11%且在Colo細胞中自36%減少到11%,然而在以一空 办允似/-及載體及Dox (+Dox)或不含Dox之一 mir-302 表現載體(+mir-302s-Dox)轉染後,其細胞 形態或細胞增殖率皆不會有明顯的改變。根據該等發現, 吾人展示異位mir-302s表現能將正常及癌症人類體細胞轉 化為一類ES細胞的形態及細胞分裂率。 51 201009074 遂直备種mirPS細麻.之類胚胎薄的形成 所有該等mirPS細胞皆能形成源自人類胚胎幹(ES)細 胞之類胚胎體(EB)的緊密細胞叢(圖5B)。換句話說,這證 明本發明所轉化之該等多能性類幹細胞可形成類胚胎體。 當以胰蛋白酶EDTA(trypsin-EDTA)及膠原蛋白酶 IV(collagenase IV)之一混合物分離該等類EB細胞,然後在 僅具有10%FBS補充成分之RPMI 1640培養液中培養該等 類EB細胞後,該等類EB細胞會分化成神經元源祖細胞 ❹ (progenitor cell),其中有許多該等神經元源祖細胞表現神 經元標記Tujl及/或ABCA2。在限數稀釋法及進一步在該 不含哺乳細胞之DMEM/F12培養液(補充成分為1〇%炭吸 附FBS、4 mM L-麩醯胺、1 mM丙酮酸鈉、5 ng/ml活化 素、3 ng/ml bFGF、以及 0.5 μΜ Y-27632 與 0.5 μΜ GSK-3 抑制劑XV之一等量混合物)中培養後,每一 mirps細胞可 繼續形成用來繼代培養(sub-culturing)及/或移植/植入測驗 的一純類胚胎體(圖5C)。鑑於該等類ES幹細胞特性,吾 © 人接著在該等mirPS細胞中檢驗mir-302s及ES細胞標記 的表現,並與人類ES WA01-H1及WA09_H9細胞作比較。 在giirPS知爽电之mir_302s表現的微型接醯核酸(miRNA) 微陣列分析 為確認該等mirPS細胞中的基因轉殖mir_3〇2表現, 吾人實行實施例9中所述之微型核醋核酸(miRNA)微陣列 分析。如圖6A所示,miRNA微陣列分析顯示,與原始體 52 201009074 細胞(控制組)相較,在Dox處理(100 μΜ)後所有mir-302 成員之表現率(最右下方,白色方框中之圓圈)在該等 mirPS-hHFC細胞中明顯地增加。mir-302s在mirPS細胞中 的表現程度與Dox誘發之濃度成比例對應(圖4B),如北方 點墨法所判定般。在mirPS-Colo細胞中也觀察到相同的結 果(Lin等人,2008b)。在早期EB階段,使用一/m>Vana™ miRNA 分離工具(Ambion Inc.,Austin,TX)自每一細胞株 分離出多個小型RNA。該等分離之小型RNA的純度及品 質係使用3.5%曱醛-洋菜膠電泳及光譜儀測量(Bio-Rad, Hercules,CA)來評估,然後立刻送交至LC Sciences(San Diego ’ CA)進行微陣列分析。在Cy3及Cy5強度影像(藍 背景)中,當訊號強度自第1級增加至第65,535級時,對 應之色彩由藍色轉變成綠色、黃色,再到紅色。在Cy5/Cy3 比之影像(黑背景)中,當Cy3級高於Cy5時,色彩為綠色; 當Cy3級等於Cy5級時,色彩為黃色;及當Cy5級高於 Cy3級時,色彩為紅色。由於在天然mir-302家族成員及 本發明之人造重設mir-302 pre-miRNA/shRNA因劑之間的 該等成熟RNA序列分享極高的同源性(>91%),此結果表 示該等重設mir-302因劑可取代天然mir-302s之功能。 根據此結果,吾人也發現mir-302表現之提高可進一 步地增加一些其它miRNA的表現,如:mir-92、mir-93、 mir-200c、mir-367、mir-37卜 mir-372、mir-373、mir-374、 及整個mir-520家族成員。根據對該等miRNAs之預測標 的基因的分析,使用連結至Sanger miRBase::Sequences網 53 201009074 站(http://microrna. sanger.ac.uk/)之「TARGET SCAN」 (http://www.targetscan.org/vert_42/)及「PICTAR-VERT」 (http://pictar.bio.nyu.edu/cgi-bin/PicTar_vertebrate.cgi?)程 式展示mir-302與該等miRNA分享超過400株標的基因, 這表不該等miRNA在維持幹細胞多能性與再生方面亦可 能扮演了重要的角色。該等一致性標的基因包括(但不限 於):RAB/RAS-相關致癌基因之成員、ECT相關致癌基因、 型態多樣化腺瘤基因(pleiomorphic adenoma genes)、E2F 轉 ▲ 錄因子、細胞週期素cyclin D結合類Myb轉錄因子、 HMG-box轉錄因子、Sp3轉錄因子、轉錄因子類CP2蛋白 質、NFkB活化蛋白基因、細胞週期素相關激酶(CDK)、 MAPK相關激酶、SNF相關激酶、肌凝蛋白輕鏈激酶 (myosin light ch导in kinases)、TNF-α-誘發蛋白基因、DAZ 相關蛋白基因、LIM相關同位序列基因、DEAD/H box蛋 白基因、叉頭盒(forkhead box)蛋白基因、BMP調節子、bFGF, and an equal mixture of 0.5 μΜ Y-27632 and 0.5 μΜ GSK-3 inhibitor XV. The first (left) and second (right) peaks of the flow fine code counter round table indicate the content of the cell population in the G0/G1 and mitotic stage of dormancy in the entire cell population subjected to the test. After the πήΓ-3023 transfection, the mitotic cell population (pupling stage) decreased from 41% to 11% in hHFC and from 36% to 11% in Colo cells, but it was allowed to be treated in one empty space. After transfection with the vector and Dox (+Dox) or one of the Dox-free mir-302 expression vectors (+mir-302s-Dox), the cell morphology or cell proliferation rate did not change significantly. Based on these findings, we demonstrate that ectopic mir-302s exhibit a morphological and cell division rate that converts normal and cancer human somatic cells into a class of ES cells. 51 201009074 Formation of embryonic thin mites such as mirPS. All of these mirPS cells are capable of forming compact cell clusters derived from embryonic bodies (EB) such as human embryonic stem (ES) cells (Fig. 5B). In other words, this demonstrates that the pluripotent stem cells transformed by the present invention can form embryoid bodies. When EB cells were isolated by a mixture of trypsin EDTA (trypsin-EDTA) and collagenase IV (collagenase IV), and then cultured in RPMI 1640 medium with only 10% FBS supplement, These EB cells differentiate into neuronal progenitor cells, many of which have neuronal markers Tujl and/or ABCA2. In the limiting dilution method and further in the DMEM/F12 culture medium containing no lactating cells (the supplement is 1% carbon adsorption FBS, 4 mM L-glutamate, 1 mM sodium pyruvate, 5 ng/ml activin) After culturing in 3 ng/ml bFGF and 0.5 μΜ Y-27632 in an equal mixture with 0.5 μΜ GSK-3 inhibitor XV, each mirps cell can continue to be formed for sub-culturing and / or a pure embryonic body of the transplant / implant test (Figure 5C). In view of these ES stem cell characteristics, we then tested the expression of mir-302s and ES cell markers in these mirPS cells and compared them with human ES WA01-H1 and WA09_H9 cells. Micro-nucleic acid (miRNA) microarray analysis of mir_302s expressed in giirPS to confirm the gene transfer mir_3〇2 expression in these mirPS cells, we carried out the micronucleic acid (miRNA) described in Example 9. Microarray analysis. As shown in Figure 6A, miRNA microarray analysis showed the performance of all mir-302 members after Dox treatment (100 μΜ) compared to the original body 52 201009074 cells (control group) (bottom right, white box) The circle) is markedly increased in these mirPS-hHFC cells. The degree of expression of mir-302s in mirPS cells was proportional to the Dox-induced concentration (Fig. 4B), as determined by the Northern blotting method. The same results were also observed in mirPS-Colo cells (Lin et al., 2008b). In the early EB stage, multiple small RNAs were isolated from each cell line using a one-m>VanaTM miRNA separation tool (Ambion Inc., Austin, TX). The purity and quality of these isolated small RNAs were assessed using 3.5% furfural-cabbage electrophoresis and spectrometer measurements (Bio-Rad, Hercules, CA) and immediately sent to LC Sciences (San Diego 'CA). Microarray analysis. In the Cy3 and Cy5 intensity images (blue background), when the signal intensity increases from level 1 to level 65,535, the corresponding color changes from blue to green, yellow, and then red. In Cy5/Cy3 than in images (black background), when Cy3 is higher than Cy5, the color is green; when Cy3 is equal to Cy5, the color is yellow; and when Cy5 is higher than Cy3, the color is red . Since the high homology (>91%) is shared between the mature miRNA sequences of the natural mir-302 family members and the artificially-reset mir-302 pre-miRNA/shRNA agents of the present invention, this result indicates These reset mir-302 agents can replace the function of natural mir-302s. Based on this result, we also found that the improvement of mir-302 performance can further increase the performance of some other miRNAs, such as: mir-92, mir-93, mir-200c, mir-367, mir-37 mir-372, mir -373, mir-374, and members of the entire mir-520 family. Based on the analysis of the predicted target genes of these miRNAs, use "TARGET SCAN" (http://www.http://www.microfar.com/sanger.ac.uk/) linked to Sanger miRBase::Sequences Network 53 201009074 (http://www. Targetscan.org/vert_42/) and the "PICTAR-VERT" (http://pictar.bio.nyu.edu/cgi-bin/PicTar_vertebrate.cgi?) program show that mir-302 shares more than 400 target genes with these miRNAs. This indicates that these miRNAs may also play an important role in maintaining stem cell pluripotency and regeneration. Such conformable targets include, but are not limited to, members of the RAB/RAS-related oncogene, ECT-related oncogenes, pleiomorphic adenoma genes, E2F transgenic factors, cyclins Cyclin D binds to Myb transcription factor, HMG-box transcription factor, Sp3 transcription factor, transcription factor CP2 protein, NFkB-activated protein gene, cyclin-related kinase (CDK), MAPK-related kinase, SNF-related kinase, and myosin Myosin light ch in kinases, TNF-α-inducible protein gene, DAZ-related protein gene, LIM-related homologous gene, DEAD/H box protein gene, forkhead box protein gene, BMP regulator ,

Rho/Rac鳥嘌吟核苷酸交換因子、IGF受體、内皮素 0 (endothelin)受體、左右決定因子、細胞週期素、p53可誘 發核蛋白基因、類RB 1、RB結合蛋白基因、最大結合蛋 白基因(Max-binding protein genes)、免疫識別 c-MIR 細胞 調節子(c-MIR cellular modulator of immune recognition)、類 Bcl2凋亡促進子(apoptosis facilitator)、連接蛋白 (protocadherins)、整合蛋白(integrin)fl4/fl8、抑制素 (inhibin)、奶克力(ankyrins)、SENP1、NUFIP2、FGF9/19、 SMAD2、CXCR4、EIF2C、PCAF、MECP2、組織蛋白乙 54 201009074 醢轉化酶(histone acetyltransferase)MYST3、細胞核核醋核 蛋白H3(nuclear RNP H3)、以及許多細胞核受體與因子。 大多數之該等基因與腫瘤/癌症之胚胎發育及/或腫瘤發生 南度地相關。 標準人類ES標記袅現之識別,即:Oct3/4、SSEA-3、 SSEA-4、Sox2 及 Nanog 如圖6B及9B所示,該等mirPS細胞強烈地表現許多 $ 標準人類ES細胞標記,如:0ct3/4、SSEA-3、SSEA-4、Rho/Rac guanine nucleotide exchange factor, IGF receptor, endothelin receptor, left and right determinant, cyclin, p53 can induce nuclear protein gene, RB-1, RB binding protein gene, maximal Max-binding protein genes, c-MIR cellular modulator of immune recognition, apoptosis-like facilitator, protocadherins, integrin Integrin)fl4/fl8, inhibin, ankyrins, SENP1, NUFIP2, FGF9/19, SMAD2, CXCR4, EIF2C, PCAF, MECP2, tissue protein B 54 201009074 stone converting enzyme (histone acetyltransferase) MYST3 , nuclear nucleocapsid protein H3 (nuclear RNP H3), and many nuclear receptors and factors. Most of these genes are related to the embryonic development and/or tumorigenesis of tumors/cancers. Identification of standard human ES markers, namely: Oct3/4, SSEA-3, SSEA-4, Sox2, and Nanog As shown in Figures 6B and 9B, these mirPS cells strongly express many of the $ standard human ES cell markers, such as :0ct3/4, SSEA-3, SSEA-4,

Sox2及Nanog ’然而在原始體細胞(hHFC控制組)中未偵測 到任何該等標記,且該等體細胞係以一空办及 載體及去氧經(hHFC+Dox)或是不含去氧經之一 mir-302s 載體(mirPS-Dox)來轉染。如北方及西方點墨分析法所判定 之mRNA及蛋白質含量,該等ES標記之表現型式極類似 於人類ES WA01-H1及WA09-H9細胞之表現型式。此等 結杲表示mir-302s之異位表現能將成人體細胞/癌細胞轉 © 化為類ES多能性幹細胞,其呈現許多標準人類ES標記。 在mirPS-Colo細胞中也觀察到相同的結果(圖8C)。Sox2 and Nanog 'However, none of these markers were detected in the original somatic cells (hHFC control group), and the somatic cells were isolated and deoxygenated (hHFC+Dox) or deoxygenated. Transfected with one of the mir-302s vectors (mirPS-Dox). The mRNA and protein content determined by the Northern and Western blotting assays are very similar to those of human ES WA01-H1 and WA09-H9 cells. These scabs indicate that ectopic performance of mir-302s can convert adult somatic/cancer cells into ES-like pluripotent stem cells, which present many standard human ES markers. The same results were also observed in mirPS-Colo cells (Fig. 8C).

Oct3/4(也稱為〇ct-3或〇ct-4)係該等POU轉錄因子其 一’其主要並高度地表現在全能之胚胎幹及生殖細胞中 (Scholer 等人 ’(1989)五J· 8:2543-2550 ; Rosner 等人, (1990) 345:686-692)。吾人需要一臨界含量之 〇ct3/4 表現來維持幹細胞自我再生及多能性。〇ct3/4之抑低調節 (down-regulation)導致胚胎幹細胞分化進入分歧發育程 55 201009074 序。SSEA蛋白、SSEA]、SSEA-3及SSEA-4原先係以單 株抗體來識別,該等單株抗體辦識在著床前期階段之鼠科 動物胚胎及畸形癌(teratocarcinoma)幹細胞之表面上的 lacto-及globo-醣脂類’但不辨識在其分化衍生物上的lact〇_ — 及 globo-醣脂類(Solter 等人 ’(1978) Proc. 々Μ · C/&4 75:5565-5569)。未分化之靈長類胚胎幹(ES)細胞、人 類胚胎癌(embryonic cancer,EC)及ES細胞全都表現 SSEA-3 及 SSEA-4 ’ 但未表現 sSEA-l(Thomson 等人,(1998) 如>腳 282:1145-1147)。SSEA-3 及 SSEA-4 係於_子生成 ❹ 期間合成,並主要呈現在卵母細胞、接合子及早期酶切階 段胚胎之該等膜中(Shevinsky等人,(1982) CeiY 30:697-705)。在維持多能性方面,s〇x2具有如一核轉錄因 子之功冑,但此功能並非專對胚胎幹細胞(BQyer等.人, (2005) Ce//122:947-956)。因此,根據此種認知,該等mirpS 細胞很可能呈現該等人類ES標記之所有特性。Oct3/4 (also known as 〇ct-3 or 〇ct-4) is one of these POU transcription factors that is predominantly and highly expressed in pluripotent embryonic stem and germ cells (Scholer et al. (1989) V. · 8:2543-2550; Rosner et al. (1990) 345:686-692). We need a critical amount of 〇ct3/4 to maintain stem cell self-regeneration and pluripotency. Down-regulation of 〇ct3/4 leads to differentiation of embryonic stem cells into divergent developmental pathways. SSEA protein, SSEA], SSEA-3, and SSEA-4 were originally identified by monoclonal antibodies, which were found on the surface of mouse embryos and teratocarcinoma stem cells at the pre-implantation stage. Lacto- and globo-glycolipids 'but do not recognize lact〇_- and globo-glycolipids on their differentiated derivatives (Solter et al. (1978) Proc. 々Μ · C/& 4 75:5565 -5569). Undifferentiated primate embryonic stem (ES) cells, human embryonic carcinoma (EC) and ES cells all exhibit SSEA-3 and SSEA-4' but do not exhibit sSEA-1 (Thomson et al., (1998) > Foot 282: 1145-1147). SSEA-3 and SSEA-4 are synthesized during _ ❹ ❹ formation and are mainly present in oocytes, zygote and early cleavage stage embryos (Shevinsky et al., (1982) CeiY 30: 697- 705). In terms of maintaining pluripotency, s〇x2 has the function of a nuclear transcription factor, but this function is not specific to embryonic stem cells (BQyer et al. (2005) Ce//122: 947-956). Therefore, based on this recognition, these mirp cells are likely to exhibit all of the characteristics of these human ES markers.

基爾難DNA去甲基化(韓化)之评估 後天修飾之改變特別強調ES細胞之另一獨特的功 能·基因體去曱基化(Hochedlinger等人,(2006)施⑽己 441:1061-1067)。為了將一細胞轉化成其ES狀態,許多胚 胎基因需要藉由DNA去甲基化來再次活化,如:(9以3/4。 為了評估在該等mirPS細胞中之此種後天效應,吾人首先 以冲―進行整個基因體解消,冲以/係一對CpG曱基化 敏感的限制酶,並僅切開一未曱基化之CCGG位而非一甲 56 201009074Evaluation of Keel Difficult DNA Demethylation (Kanhua) The change of the day after day modification emphasizes another unique function of ES cells. The genome is demethylated (Hochedlinger et al., (2006) Shi (10) 441:1061- 1067). In order to convert a cell into its ES state, many embryonic genes need to be reactivated by DNA demethylation, such as: (9 to 3/4. In order to assess this acquired effect in these mirPS cells, we first In order to eliminate the entire genomic elimination, rush to / a pair of CpG thiolation-sensitive restriction enzymes, and cut only one undenidized CCGG position instead of one A 56 5609009074

基化之CCGG位。圖7A顯示來自體細胞控制組之解消的 DNA片段,其比來自該等mirps細胞之解消DNA片段超 過兩倍大’這表示整個mirPS細胞基因體係高度地去曱基 ' 化。使用二亞硫酸鹽-基因體PCR及核酸定序來實行OdW • 基因啟動子區域中的進一步評估(Takahashi及Yamanaka, 2006)。二亞硫酸鹽可將所有未曱基化之胞嘧啶轉換為尿嘧 啶。因為未曱基化之ACGT位會被改變成AUGT位,ACGT-切割限制酶之解消無法切開在該等mirPS細胞基因體中的 φ 分離區域(圖7B)。由該二亞硫酸鹽DNA定序來顯示之詳 細去曱基化映像圖進一步展示該OeW基因啟動子區域在 該等mirPS細胞中喪失超過90%之曱基化位,其類似在該 等人類ESWA09-H9細胞中所發生的狀況(圖7C),這表示 的確發生一泛基因體轉化事件以再活化該〇以3/4基因表 現。實施例8顯示上述之CpG去甲基化實驗。 在判定基因啟動子中之該等去曱基化位的實驗 ^ 中,吾人首先以二亞硫酸鹽(CpGenome DNA修飾工具,The CCGG bit of the base. Figure 7A shows the DNA fragment from the somatic cell control group which is more than twice as large as the depleted DNA fragment from the mirps cells. This indicates that the entire mirPS cell gene system is highly deaminated. Further evaluation in the OdW• gene promoter region was performed using disulfite-genosome PCR and nucleic acid sequencing (Takahashi and Yamanaka, 2006). Disulfite converts all ungerminated cytosines to uracil. Since the ungerminated ACGT position was changed to the AUGT position, the ACGT-cleavage restriction enzyme solution could not cut the φ separation region in the miRNA of the mirPS cells (Fig. 7B). The detailed dethiolation map shown by the disulfite DNA sequencing further demonstrates that the OeW gene promoter region loses more than 90% of the thiolation sites in the mirPS cells, similar to those in the human ESWA09 The condition that occurs in the H9 cells (Fig. 7C), which indicates that a pan-genome transformation event does occur to reactivate the sputum to express the 3/4 gene. Example 8 shows the above CpG demethylation experiment. In the experiment to determine the dethiolation positions in the promoter of the gene, we first used disulfite (CpGenome DNA modification tool,

Chemicon,CA)處理該等分離之基因體DNA,其將所有未 甲基化之胞嘧啶轉換成尿嘧啶,然後使用聚合酶鏈反應來 分離Oc/K 上游啟動子區域(長模板PCR延伸工具,Chemicon, CA) processes the isolated genomic DNA, which converts all unmethylated cytosines to uracil, and then uses the polymerase chain reaction to separate the Oc/K upstream promoter region (long template PCR extension tool,

Roche,IN)。其後,以多個ACGT切割限制酶之一相等混 合物(每一限制酶5U)來收集並解消PCR產物,該等ACGT 切割限制酶包含:如// (AACGTT)、瓜(CACGTC)、Pm// (CACGTG)、如a5/(TACGTA)及例/「(ACGT)。因為 在此區域中之該等未甲基化之ACGT位係以二亞硫酸鹽改 57 201009074 變成AUGT位,其無法用該等ACGT切割限制酶來切開,故 圖7B之結果指出在該控制組hHFC、PC3及Colo細胞中超過 四個曱基化ACGT位被改變成在對應之mirps細胞中的去 甲基位。因此,該Oc/W基因啟動子之此mir-302-介導去曱 基化可促成在該等mirPS細胞中之基因表現的再活 源自棘務性癌症之該等mirPS細跑中遵游紙六之喪生 人類ES細胞不會遷移。源自快速轉移性癌症細胞株之 φ 該等mirPS細胞(如:mirPS-PC3細胞)中常可觀察到細胞失 去遷移能力。由於ES細胞傾向在一處休眠並在原位(以们·如) 形成類胚胎體,此可解釋為何轉移性人類前列腺癌PC3細 胞在異位mir-302轉染後會喪失其遷移能力。在其它實施例 中’ mir-302可將某些細胞遷移相關基因靜默,以避免正常 細胞遷移及癌細胞侵入’該等細胞遷移相關基因如:細微 管相關蛋白質基因1Β(Μ4Ρ75)、類肌動蛋白蛋白質 C7X&4)、荆克力2(ΑΜ2)、殿粉樣蛋白β先驅物八4(/尸/>)、 〇 肌凝蛋白輕多肽激酶(myosin light p〇lypeptide kinase, MFXiQ。如圖7D及實施例12中所示,轉移性pC3細胞很快 地隨時間而遷移,然而mirPS-PC3細胞保持靜止不動。在所 有其它控制組中沒有觀察到任何形態上的改變。因此,本 發明之基因轉殖mif-302S表現足以將人類癌症細胞轉形成 一更類似ES之細胞开>態及細胞分裂率,這暗示一種在癌症 治療上極有益的利用。此結果暗示用來將該等mir_3〇2傳送 58 201009074 進癌症/腫瘤細胞中的一潛在治療應用,其不僅可將該等惡 性之癌症/腫瘤細胞轉化為有用之類ES幹細胞,也可減少癌 症轉移的機會。更有利的係,由於該等mirPS細胞係由病人 自身之細胞生成’且因此其和病人具有免疫相容性,故可 . 利用該等mirPS細胞來發展一種新穎移植治療,以修補該等 癌症/腫瘤受損組織而不會有免疫排斥之風險。 使用基因撤陣列分析識別整體ES標記表現 φ 泛基因體基因圖譜可提供對與該mir-302-介導轉化事 件有關之基因變化的理解。在確認標準ES細胞標記及基 因轉殖mir-302s的共同表現後,吾人進一步在該異位 mir-302表現之前及之後’在該等細胞中以及在該等mirps 及其它人類ES細胞(如:WA01-H1及WA09-H9)間進行人 類基因體微陣列分析來篩選泛基因體基因表現型式的變 化。實施例10中顯示詳細之操作程序。使用Affymetrix 基因微陣列(GeneChip U133A&B 及 U133 plus 2.0 陣列)來 〇 評估超過47,〇〇〇種人類基因表現型式之改變。吾人首先使 用相同之mirPS樣本來複製該等微陣列測試,並從該等測 試中之一選擇兩百株最可變之基因(白點)以供進一步之比 較。如圖 8A(mirPS-Colo)及圖 9A(mirPS-hHFC)所示,複製 測試之整體變化少於一倍(最左側),這表示背景變化係極 有限的。根據所有微陣列識別之基因的分散型式,吾人接 著計算兩組比較轉錄體資料庫之結果間的相關係數 (correlation coefficiency,CC)。再提供一 CC 率以顯示在該 59 201009074Roche, IN). Thereafter, the PCR product is collected and eliminated by an equal mixture of one of a plurality of ACGT cleavage restriction enzymes (5 U per restriction enzyme), such as: / / (AACGTT), melon (CACGTC), Pm / / (CACGTG), such as a5/(TACGTA) and example/"(ACGT). Because the unmethylated ACGT in this region is changed to AUGT with disulfite changed 57 201009074, it cannot be used. The ACGT cleavage restriction enzymes were cleaved, so the results of Figure 7B indicate that more than four thiolated ACGT positions in the control group hHFC, PC3 and Colo cells were changed to the demethylation position in the corresponding mirps cells. , the mir-302-mediated demethylation of the Oc/W gene promoter contributes to the reactivation of the gene expression in the mirPS cells derived from the mirPS in the sinus cancer The loss of migration of human ES cells does not migrate. The cells derived from the rapidly metastatic cancer cell line φ are often observed in these mirPS cells (eg, mirPS-PC3 cells). Because ES cells tend to sleep in one place. Forming embryoid bodies in situ (eg, eg), which explains why metastatic humans Adenocarcinoma PC3 cells lose their ability to migrate after ectopic mir-302 transfection. In other examples, 'mir-302 can silence certain cell migration-related genes to avoid normal cell migration and cancer cell invasion'. Cell migration-related genes such as: microtubule-associated protein gene 1Β(Μ4Ρ75), actin-like protein C7X&4), Jingkeli 2(ΑΜ2), temple powder-like protein β precursors 8 4 (/corpse/>), 〇 Myosin light p〇lypeptide kinase (MFXiQ). As shown in Figure 7D and Example 12, metastatic pC3 cells migrated rapidly over time, whereas mirPS-PC3 cells remained stationary. No morphological changes were observed in the other control groups. Therefore, the gene transfer mif-302S of the present invention is sufficient to convert human cancer cells into a more ES-like cell opening state and cell division rate, suggesting a A very beneficial use in cancer treatment. This result suggests a potential therapeutic application for the transfer of these mir_3〇2 into cancer/tumor cells, which can not only treat these malignant cancers/swells The transformation of tumor cells into useful ES stem cells can also reduce the chance of cancer metastasis. More favorable, since these mirPS cell lines are produced by the patient's own cells, and thus they are immunologically compatible with patients, it can be. These mirPS cells are utilized to develop a novel transplantation therapy to repair such cancer/tumor damaged tissues without the risk of immune rejection. Identification of overall ES marker expression using gene withdrawal array analysis φ The pan-genome gene map provides insight into the genetic changes associated with this mir-302-mediated transformation event. After confirming the common performance of standard ES cell markers and gene-transferred mir-302s, we further [before and after the ectopic mir-302 performance in these cells and in these mirps and other human ES cells (eg: Human genomic microarray analysis was performed between WA01-H1 and WA09-H9) to screen for changes in ubiquitin gene phenotypes. The detailed operation procedure is shown in Embodiment 10. Affymetrix gene microarrays (GeneChip U133A & B and U133 plus 2.0 arrays) were used to assess changes in phenotypes of more than 47 human genes. We first used the same mirPS samples to replicate these microarray tests and selected two hundred of the most variable genes (white spots) from one of these tests for further comparison. As shown in Figure 8A (mirPS-Colo) and Figure 9A (mirPS-hHFC), the overall variation of the replication test is less than double (leftmost), which means that the background variation is extremely limited. Based on the decentralized pattern of all microarray-recognized genes, we then calculated the correlation coefficient (CC) between the two sets of comparative transcript databases. Provide another CC rate to display in the 59 201009074

泛基因體基因表現型式中之相似度百分比,該等泛基因體 基因表現型式具有的臨限值僅有丨倍的表現量差異 (one-fold change)。在此種嚴謹之cC率定義下,吾人發現 mirPS細胞之該等基因表現型式極類似於人類ES WA01-H1(>89%)及 WA09-H9(>86%)細胞之表現型式, 然而在該等m i rP S細胞及其體細胞/癌細胞來源之間僅顯示 一低的47%-53% CC率。在人類ES及mirpS細胞間之此 種強大基因相關性暗示mir_3〇2s可能需要改變數千種細胞 基因表現’其包括將一體細胞/癌細胞轉化為一類ES mirPS 細胞的過程。例如,如圖8B所示,在該等mirps及人類 ES細胞結果中持續並同時觀察到,多個ES基因表現提高 以及許多個致癌、發育與mir_3〇2標的細胞週期相關的基 因停擺。參考圖9B,針對該等mirPS細胞之基因表現型式 而論,也可注意到SSEA-1適度地表現在該等mirps細胞 中,而Klf4則無。 圖8B顯示在Colo及mirPS-Colo細胞之間之一些主要 分化表現基因的清單。在圖8B中,吾人注意到細胞週期 檢查點基因(即:CDK2、細胞週期素cydinDl及D2)以及 DNA曱基促進子(即:MECP2及MECPl-p66)全經確認為 mir-302s之強力標的。換句話說,該等多能性類幹細胞表 現豐富之mir-302微型核醣核酸及0ct4,但僅表現有限之 CDK2、cyclin Dl、MECPl-p66 及 MECP2。在圖 8C 及圖 9B中也觀察到相同的結果。已知cyclinE相關CDK2係進 入S期細胞週期所必需的,且抑制CDK2會造成G1期檢 201009074 查點停滯,鮮而 G1期的停滞。: 在回應腿損害時可無視於 根據此原則,在mirPS細胞中CDIC2 π r 胞週期可達到__ 轉染癌症細胞之細 此種癌二 胞分裂率,如圖5A所示。因此, 的好;! Γ 週期轉換的結果對癌症治療可有極大 ❹The percentage of similarity in the ubiquitin gene phenotype, which has a threshold of only a one-fold change. Under the definition of such a stringent cC rate, we have found that the phenotypes of these genes of mirPS cells are very similar to those of human ES WA01-H1 (>89%) and WA09-H9 (>86%) cells, however Only a low 47%-53% CC rate was shown between these mi rP S cells and their somatic/cancer cell sources. This strong genetic correlation between human ES and mirpS cells suggests that mir_3〇2s may need to alter thousands of cellular gene expression's including the process of transforming integrated cells/cancer cells into a class of ES mirPS cells. For example, as shown in Figure 8B, sustained and simultaneous observations in these mirps and human ES cell results revealed increased performance of multiple ES genes and a number of carcinogenic, developmental gene-related arrests associated with the cell cycle of mir_3〇2. Referring to Figure 9B, for the gene expression patterns of these mirPS cells, it is also noted that SSEA-1 is moderately expressed in the mirps cells, whereas Klf4 is absent. Figure 8B shows a list of some of the major differentiation-expressing genes between Colo and mirPS-Colo cells. In Figure 8B, we note that the cell cycle checkpoint genes (ie, CDK2, cyclin cydinDl and D2) and the DNA thiol promoter (ie: MECP2 and MECPl-p66) have all been identified as strong targets for mir-302s. . In other words, these pluripotent stem cells are rich in mir-302 microRNA and 0ct4, but only have limited CDK2, cyclin Dl, MECPl-p66 and MECP2. The same results were also observed in Figures 8C and 9B. It is known that the cyclinE-related CDK2 line is required for the S phase of the cell cycle, and inhibition of CDK2 results in a G1 phase check. 201009074 Checkpoint stagnation, fresh and G1 arrest. : Can be ignored in response to leg damage. According to this principle, the CDIC2 π r cell cycle in mirPS cells can reach the __ transfected cancer cell. This cancer mitosis rate, as shown in Figure 5A. Therefore, it is good;! 结果 The result of cycle conversion can be very great for cancer treatment.

二,’抑制MECP2及MECP1_p66活動的結果與 -_等結果—致,這表轉性癌症細胞後天轉化 為良性mkps細胞。可以想見從病人處所得之該等mirPS 、二胞可進步地幫助修補腫瘤/癌症之組織損害。總結來 說’所有該等發現顯示本發明之論-3G2基因轉殖方法可 用來將人類體細胞/癌細胞之基因圖譜轉化成一高度類挞 表現型式,其類似人類Es細胞之表現型式。Second, the results of inhibiting the activity of MECP2 and MECP1_p66 and the results of -_, etc., resulted in the conversion of cancer cells into benign mkps cells. It is conceivable that the mirPS and the two cells obtained from the patient can progressively help repair the tissue damage of the tumor/cancer. In summary, all of these findings show that the -3G2 gene transfer method of the present invention can be used to transform the genetic map of human somatic/cancer cells into a highly paramarked phenotype that resembles the phenotype of human Es cells.

MirPS細胞之吝年押 多能性定義-E S細胞最重要之特性。經由以不同因子 及/或賀爾蒙之體外操縱,人類Es細胞可分化成三層胚胎 生瘦層(外胚層、巾胚層錢定性之内胚層),其係所有成 人組織之誠。林進行任何處理下,將料㈤們衍生 類胚胎體異種移植至雌性假性懷孕免疫功能不足之 SCID-belge小鼠的子宮或腹腔中可形成類崎胎瘤之組織囊 腫(圊10)。在其它組織位置中未觀察到該等囊腫。然而, 不同於畸關,該等組、織囊腫會對其周圍喊形成一極佳 且清楚之邊界。並且,在小Μ之鱗囊廳構的成長在 移植後約2.5週時H此似乎有—自我調節之機制可體 61 201009074 内地限制該荨mirPS細胞的隨機生長。此種自我調節機制 也可避免從该等mirPS細胞形成腫瘤,這提供了在臨床試 驗及治療上用來設計及發育不含腫瘤之多能性幹細胞的一 種手段。 -The pluripotency definition of MirPS cells is the most important characteristic of E S cells. Through manipulation with different factors and/or hormones, human Es cells can differentiate into a three-layered embryonic layer (the ectoderm, the germ layer, and the endoderm), which is the integrity of all adult tissues. Under any treatment of the forest, the embryos of the embryos (5) were xenografted into the uterus or abdominal cavity of SCID-belge mice with insufficient immune function in female pseudopregnant to form a tissue-like cyst of the tumor-like tumor (圊10). These cysts were not observed in other tissue locations. However, unlike the abnormalities, these groups and sacs will scream around them to form an excellent and clear boundary. Moreover, the growth of the squamous sac in the sputum is about 2.5 weeks after transplantation. H seems to have a self-regulating mechanism. 61 201009074 The mainland limits the random growth of 荨 mirPS cells. This self-regulating mechanism also avoids the formation of tumors from these mirPS cells, which provides a means of designing and developing tumor-free pluripotent stem cells in clinical trials and treatments. -

MirPS細Jfe分化之艏外分早婁号| 在定義上,一多能性幹細胞可分化為類似源自胚胎外 胚層、中胚層及/或内胚層之該等組織細胞的各種細胞類 型。例如,使用各種生長因子及/或賀爾蒙之體外處理,吾 ❿ 人可導引類ES mirPS細胞分化為數種身體及/或生殖細胞 系組織細胞類型,包括:神經元源祖(圖5B)、類精原細胞 (圖11A-E)、纖維母細胞(圖11F_j)、及軟骨細胞(圖 11K-0).。已利用免疫組織化學(immunohistochemicai,ihc) 偵測來識別該等特別組織譜系之標記,其分別顯示神經元 特異性之Tujl與ABCA2、生殖細胞系特異性之Daz〗a與 EE2、纖維組織母細胞特異性atlastini與第一類原膠原蛋 白(COL1A1)、及軟骨細胞特異性原彈性蛋白與第二類原膠 ◎ 原蛋白(COL2A1)。換句話說,本發明所生成之多能性類幹 細胞可分化為一類生殖細胞系細胞、類精原細胞、正常體 細胞、纖維組織母細胞、軟骨細胞、及其一組合。在該等 分化之mirPS細胞中沒有觀察到腫瘤形成的跡象。事實 上’根據Sanger網站之「TARGETSCAN」及 「PICTAR-VERT」程式的預測’已知許多致癌基因係 mir-302s之標的《此外’ mir-3〇2s可壓抑細胞週期素相關 62 201009074 激酶2(CDK2)、細胞週期素D1與D2以避免腫瘤細胞之快 速生長(Lin等人,2008b)。該等發現表示該等mirPS細胞 之不含腫瘤的多能性。可以想見,可使用各種分子處理從 該等mirPS細胞中誘導出更多組織細胞類型。 在一不含哺乳細胞培養條件下體外地進行實驗,顯示 吾人已成功地導引mirPS細胞分化成三種相對同質性之體 細胞類型(圖11A-0及實施例11)。首先,藉由以一天然雄 ❹激素-二氫睪固酿j(dihydrotestosterone,DHT 50 ng/ml)在一 不含哺乳細胞培養jdi中處理該等mirPS細胞達六小時,然 後將該等已處理之細胞(1〇5)體内移植到一六週大雌性免疫 不全SCID-beige小鼠的子宮内,於一週後在該移植位上生 成類精原細胞之一囊腫(圖11A-E)。其次,藉由以轉形生 長因子P1(TGF41 1〇〇 ng/ml)來處理該等mirPS細胞達12 小時,然後再依循相同之移植程序,該等mirpS細胞分化 為纖維母細胞並在僅一週内開始分泌膠原蛋白(圖 參 11F-J)。最後’藉由以骨成形蛋白4(bone morphogenetic protein 4,BMP4 100 ng/ml)處理該等 mirPS 細胞達 η 小 時’然後將該等細胞異體移植到一六週大之免疫功能不足 SCID-beige小鼠的肝臟内,該等mirPS細胞分化為以妈化 沈殿物圍繞的軟骨細胞(圖11K-0)。該免疫功能不足之裸 鼠係用來提供模擬移植治療之一體内環境。該等發現提供 強而有力的證據.吾人已成功地利用本發明之mir-302基 因轉殖方法來生成新的類ES多能性幹細胞株,其可在一 不含哺乳細胞的條件下體外及體内地導引成多種組織細胞 63 201009074 類型。因此,本發明不僅能將分化後之體細胞/癌細胞轉化 成一類ES狀態,同時也能在一不含哺乳細胞培養條件下 維持類ES之再生與多能性。 因此,利用一可謗發mir-302表現轉殖基因,本發明 . 提供一有力的新工具及策略,其可用來生成類ES mir-302-誘發多能性幹細胞(mirPS),特別是源自人類體細胞及癌細 胞之原生培養的mirPS細胞。更佳地,該等mirPS細胞係 得自人類正常頭髮毛囊,因為其較容易取得。由於該内含 _ 子miRNA生體合成路徑係以多個細胞内監測系統良好地 調節,包括:mRNA轉錄之成分、RNA剪接、外體處理及 NMD機制’因此本發明之内含子mir-302表現可視為較原 先之Pol-III(U6/Hl)驅動的siRNA/shRNA表現系統更加安 全。事實上’本發明者已觀察到該Ρ〇1·ΠΙ驅動之表現系統 傾向於過度表現mir-302,並引起細胞週期在G1期停滯及 死亡。本發明在結合一藥物可誘發(reM9«/Q^)載體下可進 一步提供一種可控制手段,其不僅可將哺乳動物體細胞/ Q 癌細胞轉化為類ES mirPS細胞,且可導引其形成有用的正 常組織細胞。因為已發現mir-302係一強力之腫瘤抑制基 因,故本發明所生成之該等mkps細胞沒有腫瘤形成的風 險。 本發明具有至少五個有益之突破。第---株mir_3〇2 表現轉殖基因可代替在該等先前之iPS方法中所用的所有 四株大型轉錄因子基因’用以生成更具同源性的類Es多 64 201009074 能性幹細胞(僅源自病人之少數體細胞),此可改善病人之 免疫系統的幹細胞純度及相容性。第二,因為該mir_3〇2 表現轉殖基因之總長度相對地較小(約一千個驗基),與該 等先前iPS方法中之基因轉殖傳送最大值為2%相較,本方 法之基因轉殖傳送係極高的(成功率超過91%)。第三, mirPS細胞之生成及培養完全係在一不含哺乳細胞的條件 下進行,此避免了哺乳細胞抗原污染的風險。第四,未使 用致癌基因,此避免了細胞變異及腫瘤形成的風險。最後, 本發明使用電穿孔法來代替反轉錄病毒感染以傳送該單一 mir-302表現轉殖基因,此避免了隨機反轉錄病毒插入宿主 細胞基因體的風險,其通常會引起插入突變(inserti〇nal mutagenesis)。總結來說,該等優點解決了該等先前ips方 法之三個主要問題,其避免了反轉錄病毒感染、致癌基因 突變及不確定之腫瘤發生的風險。 θ A.定義 為方便理解本發明’以下定義一些術語: ^^(Nucleotide): -單分子之去氧核醣核酸(DNA) 或核醣核酸(RNA),其包含:一醣部份體(戊醣pent〇se)、 一磷酸根(phosphate)及一含氮雜環鹼基⑻加明⑽似 heterocyclic base)。該鹼基係經由醣苦碳(giyc〇sidic carbon,該戊醣之1端碳)與該醣部份體鏈結,且該鹼基及 醣的組合係一核苷(nucleoside)。包含與該戊醣之三端與五 65 201009074 端位置鍵結之至少一個磷酸基的一核苷係一核脊酸 (nucleotide) ° 基核苷酸(Oligonucleotide):包含兩個以卜气去氧 核酸或核醣核酸的一分子,其較佳地係超過三個,而通常 超過十個。其確切長度取決於許多因素,其依次係依照該 ' 寡核苷酸之最佳功能或用途而定。該募核苷酸可用任何方 式生成,包括.化學合成、DNA複製、反轉錄、或其一組 合0 核酸(Nucleic Acid):核苷酸(nucieotide)之一聚合物, 其可為單股或雙股。 物(Nucleotide 嘌呤(pUrine)或嘧 啶(pyrimidine)核苷酸,在結構上a、T、G、C或U不同作 足夠相似,因此可在一核酸分子中取代正常核苷酸。 梭鐘羞直物(Nucleic Acid c迎m&giiioa)丄一核酸組成物 係指多核苷酸(polynucleotide) ’如:去氧核醣核酸(dna)MirPS fine Jfe differentiation is divided into early nicknames | By definition, a pluripotent stem cell can differentiate into various cell types like those derived from embryonic ectoderm, mesoderm and/or endoderm. For example, using various growth factors and/or in vitro treatment of hormones, we can induce ES mirPS cells to differentiate into several cell types of body and/or germ cell lines, including: neuronal progenitors (Fig. 5B) , spermatogonia-like cells (Fig. 11A-E), fibroblasts (Fig. 11F_j), and chondrocytes (Fig. 11K-0). Immunohistochemistry (imhoh) detection has been used to identify markers of these special tissue lineages, which show neuron-specific Tujl and ABCA2, germ cell line-specific Daz a and EE2, fibroblasts Specific atlastini and the first type of procollagen (COL1A1), and chondrocyte-specific tropoelastin and the second type of protoplast ◎ proprotein (COL2A1). In other words, the pluripotent stem cells produced by the present invention can be differentiated into a type of germ cell line cells, spermatogonia-like cells, normal somatic cells, fibroblasts, chondrocytes, and a combination thereof. No signs of tumor formation were observed in these differentiated mirPS cells. In fact, according to the predictions of the "TARGETSCAN" and "PICTAR-VERT" programs on the Sanger website, it is known that many of the oncogenes mir-302s are labeled as "In addition, 'mir-3〇2s can suppress cyclin-related 62 201009074 kinase 2 ( CDK2), cyclin D1 and D2 to avoid rapid growth of tumor cells (Lin et al, 2008b). These findings indicate the tumor-free pluripotency of these mirPS cells. It is envisaged that a variety of molecular treatments can be used to induce more tissue cell types from such mirPS cells. Experiments in vitro in a culture condition free of mammalian cells showed that we have successfully directed mirPS cells to differentiate into three relatively homogeneous somatic cell types (Fig. 11A-0 and Example 11). First, the mirPS cells were treated in a non-mammalian cell culture jdi for six hours by a natural androgenic hormone-dihydrotestosterone (DHT 50 ng/ml), and then processed. The cells (1〇5) were transplanted in vivo into the uterus of a six-week-old female immunodeficiency SCID-beige mouse, and one cyst of the spermatogonia-like cells was produced at the transplant site one week later (Fig. 11A-E). Second, the mirPS cells were treated with the transforming growth factor P1 (TGF41 1〇〇ng/ml) for 12 hours, and then followed by the same transplantation procedure, the mirp cells differentiated into fibroblasts and only one week. Collagen is secreted inside (Fig. 11F-J). Finally, 'the mirPS cells were treated with bone morphogenetic protein 4 (BMP4 100 ng/ml) for η hours' and then the cells were allografted to a six-week-old immune function deficiency SCID-beige small In the liver of the mouse, the mirPS cells differentiated into chondrocytes surrounded by the spleen (Fig. 11K-0). This immune-deficient nude mouse is used to provide an in vivo environment for mimicking transplant therapy. These findings provide strong evidence. We have successfully used the mir-302 gene transfer method of the present invention to generate a novel ES-like pluripotent stem cell line which can be cultured in vitro without a mammalian cell. Guided into a variety of tissue cells in vivo 63 201009074 type. Therefore, the present invention not only converts differentiated somatic cells/cancer cells into a class of ES states, but also maintains ES-like regeneration and pluripotency in a culture condition without mammalian cells. Thus, the present invention provides a powerful new tool and strategy for generating ES-like mir-302-induced pluripotent stem cells (mirPS), particularly from a migratory mir-302. Native cultured mirPS cells of human somatic cells and cancer cells. More preferably, the mirPS cell lines are obtained from human normal hair follicles because they are easier to obtain. Since the intron-derived miRNA biosynthesis pathway is well regulated by multiple intracellular monitoring systems, including: components of mRNA transcription, RNA splicing, exosome processing, and NMD mechanisms', the intron mir-302 of the present invention Performance can be considered safer than the original Pol-III (U6/Hl) driven siRNA/shRNA expression system. In fact, the inventors have observed that the 表现1·ΠΙ-driven expression system tends to overexpress mir-302 and cause the cell cycle to stagnate and die in the G1 phase. The invention further provides a controllable means for converting mammalian somatic cells/Q cancer cells into ES-like mirPS cells and guiding them to form under the combination of a drug-inducible (reM9«/Q^) vector. Useful for normal tissue cells. Since mir-302 has been found to be a potent tumor suppressor gene, the mkps cells produced by the present invention have no risk of tumor formation. The invention has at least five beneficial breakthroughs. The first--- mir_3〇2 expression of the transgenic gene can replace all four large transcription factor genes used in these prior iPS methods to generate more homologous Es-multiple 64 201009074 competent stem cells ( It is only derived from a small number of somatic cells of the patient), which improves the stem cell purity and compatibility of the patient's immune system. Second, because the total length of the mir_3〇2 expressing transgenic genes is relatively small (about one thousand test bases), the method is comparable to the maximum gene transfer transfer rate of 2% in the previous iPS methods. The gene transfer line is extremely high (the success rate is over 91%). Third, the production and culture of mirPS cells is carried out entirely in a condition free of mammalian cells, which avoids the risk of antigen contamination by mammalian cells. Fourth, no oncogenes are used, which avoids the risk of cell variability and tumor formation. Finally, the present invention uses electroporation instead of retroviral infection to deliver the single mir-302-expressing transgene, which avoids the risk of random retrovirus insertion into the host cell genome, which typically causes insertional mutations (inserti〇) Nal mutagenesis). In summary, these advantages address the three main problems of these previous ips methods, which avoid the risks of retroviral infection, oncogene mutations, and uncertain tumorigenesis. θ A. is defined to facilitate the understanding of the present invention. Some terms are defined below: ^^(Nucleotide): - a single molecule of deoxyribonucleic acid (DNA) or ribonucleic acid (RNA), which comprises: a sugar moiety (pentose) Pent〇se), a phosphate and a nitrogen-containing heterocyclic base (8) are (heterocyclic base). The base is linked to the sugar moiety via giyc〇sidic carbon (the terminal carbon of the pentose sugar), and the combination of the base and the sugar is a nucleoside. a nucleoside nucleotide nucleotide comprising at least one phosphate group bonded to the terminal end of the pentose and the five 65 201009074 end position: comprising two oxygen deoxygenated groups A molecule of nucleic acid or ribonucleic acid, preferably more than three, and usually more than ten. The exact length depends on a number of factors, which in turn depend on the optimal function or use of the 'oligonucleotide. The raised nucleotide can be produced in any manner, including: chemical synthesis, DNA replication, reverse transcription, or a combination thereof Nucleic Acid: a polymer of nucieotide, which can be single or double share. Nucleotide p (pUrine) or pyrimidine nucleotides are structurally a, T, G, C or U different enough to replace normal nucleotides in a nucleic acid molecule. (Nucleic Acid c welcomes m&giiioa) 核酸 a nucleic acid composition refers to a polynucleotide (eg, DNA) (dna)

或核_酸_入)’其可以單股或雙股分子結構的形式存 V 在。 基同(Gene): —核酸,其核苷酸序列係針對一 RNA及 /或一多肽類(蛋白質)編碼。一基因可以是RNA4Dna。 绘基祖迦㈣也,bp):於一雙股DNA分子中之胸腺 嘧啶(thymine,T)與腺嘌呤(adenine,A),或鳥嘌呤 (guanine,G)與胞射(cyt0Sine ’ C)之聯合(partnership)。在 66 201009074 RNA中,尿嘴咬(uracil,U)取代胸腺喊咬(thymine,T)。 一般來說,該聯合係透過氫鍵(hydrogen bonding)來連接。 _ 先驅訊息梭酿榨酸(Precursor messenger RNA, pre-mRNA): 一基因之前驅核醣核酸轉錄分子(primary ribonucleotide transcript),其經由一細胞内機制在真核細胞 中以第二型RNA聚合酶(Pol-II)結構產生,該機制稱為轉 錄(transcription)。一 pre-mRNA序列包含:五端非轉譯區 (5’-end untranslated region)、三端非轉譯區(3,-end ❹ untranslated region)、外顯子(exon)、及内含子(intron)。 内含子(Intron): 一基因轉錄分子序列之一部分或多個 部分’其編碼非蛋白質讀框,如:同一讀框内含子(in-frame intron)、五端非轉譯區(5’-UTR)及三端非轉譯區(3,-UTR)。 jlExonl : 一基因轉錄分子序列之一部分或許多 部分,其編碼蛋白質讀框。 息核聽核酸(Messenger RNA,mRNA) : pre-mRNA 外顯子之組合’其在以核内剪接結構除去内含子之後形 成’並作為用於蛋白質合成的一蛋白質編碼RNA。 _互補去氧核醣核酸(cDNA): I — mRNA序列互補之單 股DNA,且其不含任何内含子序列。 義核酸(Sense): 一核酸分子,其序列順序及組成與 同源之mRNA相同。以「+」、「s」或rsense」符號來表示 此同義核酸構造形態。 67 201009074 呈羞核酸(Antisense^ :與個別mRNA分子互補之一核 酸分子。以「-」符號來表示此反義核酸構造形態,或是在 DNA或RNA之前加上「a」或「antisense」,例如:「aDNA」 或「aRKTA」。 :在連續核苷酸之5端位置處缺少一核苦 酸的一端’其中,一個核誓酸之五端氫氧基係以一磷酸二 酯鏈接連接至下一個核苷酸之三端氫氧基。在該端可以有 其它基’如一或多個礙酸根。 三端Xll-endi :連續核苷酸之3端位置處缺少一核苷酸 的一端’其中,一個核苷酸之五端氫氧基係以一磷酸二酯 鏈接連接至下一個核苷酸之三端氫氧基。在該端可以有其 它基,通常係一氫氧根。 模姐XI迎能以一核酸聚合酶拷貝之一核酸分 子。根據不同的聚合酶,一模板可為單股、雙股或部分雙 股。合成後之拷貝係與該模板、或一雙股或部分雙股模板 中之至少一股互補。RNA與DNA皆在五端到三端的方向 合成。一核酸雙鏈體之兩股總是排列在一起,使得該等兩 股之五端係在該雙鏈體之相對端上(必要的話,該等兩股之 三端亦然)。 棱·醮模板(Nucleic Acid Template): 一雙股 DNA 分子、 雙股RNA分子、雜合分子(如:DNA-RNA或RNA-DNA 雜合物)、或單股DNA或RNA分子。 68 201009074 二致性(Conserve沿:若一核苷酸序列係與一預選(參考) 序列之確切互補物非隨機地雜合,則兩者的序列為一致性。 . I~^~(Complemetarv sL complementarity 威 complementation) : ^來參照依該等鹼基對原則 (base-pairing rule)關聯之多核苷酸(即:一序列之核苷酸 例如:序列「A-G-T」與序列「Τ-C-A」及「T-C-U」互補。 互補可以在兩股DNA之間、一股DNA與一股RNA之間、 ❿ 或是在兩股RNA之間。互補可以是「部分」或「完全」或 是「整體」的。僅當一些核酸鹼基係根據該等鹼基對原則 相配對時才會發生部分互補(partial c〇mplementarity或 complementation)。完全或整體互補則是當該等鹼基在該等 核酸股之間完全相配時才會發生。在核酸股之間的互補程 度對於核酸股之間的雜合效率及強度有重大之影響。此對 於擴增(amplification)反應特別重要,且對於根據核酸間之 鍵合(binding)的偵測方法也很重要。互補率(Percent ❹ comPlementarity 或 complementation)係指在該核酸之一股 中失配驗基數與全部驗基數的比。因此,的互補率意 才曰一半的驗基失配,而另一半的驗基相配對。即使核酸之 兩股與鹼基數不同,核酸之兩股也能互補。在此情況下, 互補發生於部分之較長股間,該較長股之鹼基與較短股之 驗基成對。 M,#(homologous homology^ :意指一多核苷酸序 列,其與一基因或mRNA序列相似。例如:一核酸序列可 69 201009074 能部分或完全與一特定基因 用全部核苷酸數與相似核苷 示0 互補驗幕(comDlemetarv 或mRNA序列同源。同源也可 酸數的比率所定的一百分比表 base):當DNA或RNA开多成 一雙股配置時正常配對之核 互補核苷醴序; 苷酸。 H fComDlemetarv Nucleotide Sequence):在一單股分子之 列,其足以與在另一單股上 兩股之間用所需之氩鍵專對 雜合 iHvbirdize 及 Hvh DNA或RNA中的一核苷酸序 的核苷酸序列互補,以在該等 地雜合。 ridization):在核轩齡序列之間 雙鏈體的形成,其充分地j 體。其中一引子(或剪接模才 複合體(或雜合物)係充分地: DNA合成所需的引子功能。 可競爭性抑制(competitive (即:非隨機)。 後轉錄基因靜默fPosttr; 補以藉由鹼基配對形成複合 免)與標的(模板)「雜合」,因此 隱定以提供一 DNA聚合酶引發 在兩條互補多核苷酸之間有一 ly inhibited)的特殊交互作用 inscriptional Gene Silencine): 在mRNA降解或轉譯抑 (knockout)或減弱(knockdo\ DNA轉殖基因或小型抑制1 核醣核酸千擾(RNA 制階段下之一標的基因剔除 m)效應,其通常以外來/病毒 k RNA任一者來觸發。 inference,RNAi): —稀在直核 細胞中之後轉錄基因靜默相 丨制,其可用小RNA分子觸發, 201009074 如:微型核醣核酸(miRNA)、小髮夾型RNA(shRNA)及小 干擾核醣核酸(siRNA)。該等小RNA分子通常可作為基因 靜默子,其干擾細胞内基因的表現’包含對該等小RNa 的完全或部分互補。 ^^AMiA{Non-coding RNA):無法用來經由細胞内 轉譯機制合成肽類或蛋白質的一 RNA轉錄分子。 嚴核醣核酸(AlieroRNA,miRJSiAl :能夠與對該 ❹ miRNA部分互補之標的基因轉錄分子鍵合的一單股 RNA°MiRNA通常係長約π到27個寡核苷酸,並能依照 在該miRNA與其標的mRNA之間的互補程度來直接降解 其細胞内之mRNA標的,或抑制其標的mRNA之蛋白質 轉譯。幾乎能在所有真核細胞中發現天然的miRNAs,其 如對抗病毒感染之一防衛物般作用,並允許在動植物發育 期間調郎基因表現。 ^ 先塵^核醣核酸(Pre-miRNA):類髮夾型單股τ 其包含用來與細胞内RNaselll内切酶交互作用的幹臂 (stem-arm)及幹環(stem-loop)區域,以產生一或多個微型核 醣核酸(miRNAs),其可靜默與該等微型核醣核酸序列互補 之標的基因。一 pre-miRNA的幹臂結構可形成—完美 (100%)或部分(失配)之雜合雙鏈體,而其幹環結構係連接 至該幹臂雙鏈體之一端以形成一圓形或一髮夹型環狀構造 形態。 71 201009074 小干擾核醣核酸(small interfering RNA,siRMA、:短雙 股核醣核酸,其係約18到25個完美鹼基對之核醣核苦酸 雙鏈體,並可降解具幾乎完美互補的標的基因轉錄分子。 小髮夾型或短髮夾型RNA(small hairDin hairpinRNA > shRNA):單股核醣核酸,其包含一對部分或 完全相配之幹臂核苷酸序列,該序列係以一失配環狀寡核 普酸分割而形成一類髮夹型結構。許多天然miRNAs係源 自類髮夾型RNA先驅物,即:先驅微核型醣核酸 (pre-miRNA)。 ® 戴體(Vector).倉巨於不同基因環境中移動或滯留之—重 組核酸組成物’如:重組DNA(rDNA)。一般來說,另_核 酸分子係在此操作性地鏈結。該載體能於一細胞中自動複 製,其中該載體及所貼附之片段也會複製。一類型之較佳 載體係一游離基因組(episome),即:可染色體外複製的一 核酸分子。較佳的載體係可自動複製及表現核酸的該等載 體。能夠引導為一或多個多肽及/或非編碼RNA編碼之表 ❹ 現基因的載體在此稱為「表現載體(expressi〇nvect〇r)」。特 別重要之載體允許由使用一反轉錄酶所製造之mRNAs來 選殖cDNA。 在一 DNA分子中之一核苷酸序列, 其編’-胺基酸殘基序列並包括上游及下游·Α表現控 制元素。 —核酸,其由一聚合酶分子所辨識 72 201009074 、鍵合)料發合成。針對本發明之目的, 可以係-已知之聚麵鍵合位、—職子及 任何序列可用-所需聚合則發合成。 ’以及 -肽_蛋白質分子,其具有 ^一^圍結構,該結構編碼—可鍵合—預選 (ligand)的受體。 Ο B.组成物 —重組減組成物’翻來表現—分離之秦3〇2因 劑’然後在哺乳動物細胞巾誘發m㈣2介導基默, 該重組核酸組成物包含: ” a) -重組,瘦基因,其中該轉殖基因編瑪與論_3〇2家 族之成員同源的一重組非編;及 b) -表現勝任紐,其㈣麵可用來傳送並表現哺乳 ’動物細胞中之重組轉殖基因。 上述之重組轉瘦基因進—步包含: a) 複數個外顯子’其中該等外顯子可鍵結以形成具有一 所需功能之一基因轉錄分子;及 b) 至少一個内含子,其中該内含子包含一重組mir_3〇2 同源物,並可經由細胞内RNA剪接及處理機制來切除 該等外顯子。 73 201009074 上述之重轉絲因的内含子進—步包含: a) 用於剪接體鍵合之—五端受體煎接位; b) ”該mir-302家族之成員同源的一基因靜默效應子介 子; c) 用於剪接體辨識之一分支點基序; d) 用於剪接體交互作用之一多嘧啶段; e) 用於剪接體鍵合之一三端受體剪接位;及 f) 複數個鏈接子,其用來在一五端至三端方向連接每一 該等上述成分。 較佳地’該基因靜默效應子編碼與5,_uaagugcuuc CAUGUUU-3’(SEQ.ID.N0.3)同源之一核酸組成物。該五 端受體剪接位係包含5’-GTAAGAGK-3,(SEQ.ID.N0.4)或 GU(A/G)AGU基序任一者或與其同源的一核苷酸序列 (如:5’-GTAAGAGGAT-3’ (SEQ.ID.NO.37)、 5’-GTAAGAGT-3’、5’-GTAGAGT-3,及 5,-GTAAGT-3,),而 該三端受體剪接位係包含GWKSCYRCAG CSEQ.ID.NCU;) 或CT(A/G)A(C/T)NG基序任一者或與其同源的一核苷酸 序列(如:5,_GATATCCTGC AG-3,(SEQ.ID.NO.42)、 5’-GGCTGCAG-3’及 5’-CCACAG-3’)。此外,一分支點序 列係位在該五端剪接位及該三端剪接位之間,其包含與 5,-TACTWAY-3,(SEQ.ID.N0.6)同源之一基序,如: 5’-TACTAAC-3’及 5’-TACTTAT-3’。另外,一多痛咬段係 74 201009074 位在接近該分支點及三端剪接位之間,其包含與 5’-(TY)m(C/-)(T)nS(C/-)_3’ (SEQ.ID.NO.7) 或 5’-(TC)nNCTAG(G/-)-3’(SEQ.ID.N0.8)任一者同源的一高 τ或C含量序列。符號「m」及「η」表示多個重覆,其y ; 更佳地’ m的數量等於1〜3且η的數量等於7〜12。符號「―」 係指在該序列中可被略過之一核皆酸。根據37 CFR 1 822 中關於用於核苷酸及/或氨基酸序列資料之符號及格式的 準則,符號W係指一腺嘌吟(adenine,Α)或胸腺嘧啶 (thymine ’ T)/展嘧啶(uraci卜u),符號κ係指一鳥嗓吟 (guanine ’ 啶(Ty尿嘴咬(u) ’符號s係指一胞 或胸腺錢(T)/尿錢(U)。陳上騎有的剪接體辨識成 5 m Ηέΐ rtiivmin ______! ι · — 嘧咬(cytosine ’ C)或鳥嘌吟(G),符號γ係指一胞嘧啶(c) 或胸腺嘧啶(T)/尿嘧啶(u),符號R係指一腺嘌呤(A)或鳥嘌 呤(G)’及符號N係指一腺嘌呤(a)、胞嘧啶(c)、鳥嘌呤(G) 分’去氧胸苷(thymine/deoxythymidine,Τ)核苷酸可用尿核 苷(uridine,U)代替。 ^ C.方法 一種用來將哺乳動物細胞轉化為多能性幹細胞之方Or nuclear_acid_in)' can be in the form of a single or double-strand molecular structure. Gene: - A nucleic acid whose nucleotide sequence is encoded for an RNA and/or a polypeptide (protein). One gene can be RNA4Dna. Kikuzu (4) also, bp): thymine (T) and adenine (A), or guanine (G) and cytosol (cyt0Sine ' C) in a double-stranded DNA molecule The partnership. In 66 201009074 RNA, uricil (U) replaces thymine (T). Generally, the joint is connected by hydrogen bonding. _ Precursor messenger RNA (pre-mRNA): a gene primo ribonucleotide transcript that uses a second type of RNA polymerase in eukaryotic cells via an intracellular mechanism ( Pol-II) structure is produced, and this mechanism is called transcription. A pre-mRNA sequence comprises: a 5'-end untranslated region, a 3'-end untranslated region, an exon, and an intron. . Intron: A part or parts of a gene transcriptional molecule sequence that encodes a non-protein reading frame, such as: an in-frame intron, a five-terminal non-translated region (5'- UTR) and three-terminal untranslated area (3,-UTR). jlExonl: A portion or portion of a gene transcriptional molecule sequence that encodes a protein reading frame. Messenger RNA (mRNA): A combination of pre-mRNA exons that form after the intron cleavage structure removes introns and acts as a protein-encoding RNA for protein synthesis. _Complementary deoxyribonucleic acid (cDNA): I - a single strand of DNA complementary to the mRNA sequence, and which does not contain any intron sequences. Sense: A nucleic acid molecule whose sequence and composition are identical to the homologous mRNA. The synonymous nucleic acid structure is represented by the symbol "+", "s" or rsense. 67 201009074 Antisense^: A nucleic acid molecule complementary to an individual mRNA molecule. The "-" symbol indicates the structure of the antisense nucleic acid, or "a" or "antisense" is added before the DNA or RNA. For example: "aDNA" or "aRKTA": at the 5th position of the contiguous nucleotide lacking a terminal end of a bitter acid 'where a five-terminal hydroxyl group of a nuclear acid is linked by a phosphodiester link The three-terminal hydroxyl group of the next nucleotide. There may be other groups at the end such as one or more acid-blocking residues. Three-terminal Xll-endi: one end of the nucleotide lacking a nucleotide at the 3-terminal position' Wherein, the five-terminal hydroxyl group of one nucleotide is linked to the three-terminal hydroxyl group of the next nucleotide by a monophosphate diester linkage. There may be other groups at this end, usually a hydroxide. XI welcomes one nucleic acid molecule by one nucleic acid polymerase. Depending on the polymerase, a template can be single-stranded, double-stranded or partially double-stranded. The synthesized copy is combined with the template, or a double or partial double At least one strand of the stock template is complementary. RNA and DNA are in five to three ends Directional synthesis. The two strands of a nucleic acid duplex are always aligned such that the five ends of the two strands are on opposite ends of the duplex (and if necessary, the three ends of the two strands are also) Nucleic Acid Template: A double-stranded DNA molecule, a double-stranded RNA molecule, a hybrid molecule (eg, a DNA-RNA or RNA-DNA hybrid), or a single strand of DNA or RNA molecule. 68 201009074 Binary (Conserve: If a nucleotide sequence is non-randomly heterozygous with the exact complement of a preselected (reference) sequence, the sequence of the two is consistent. I~^~(Complemetarv sL complementarity Complementation) : ^ Refers to the polynucleotides associated with the base-pairing rule (ie, a sequence of nucleotides such as: sequence "AGT" and sequence "Τ-CA" and "TCU") Complementary. Complementary can be between two strands of DNA, between one strand of DNA and one strand of RNA, or between two strands of RNA. Complementation can be "partial" or "complete" or "whole". Partial complementation occurs when some nucleic acid bases are paired according to the principles of these base pairs (p Artial c〇mplementarity or complementation. Complete or integral complementation occurs when the bases are perfectly matched between the nucleic acid strands. The degree of complementarity between nucleic acid strands is the heterozygous efficiency between nucleic acid strands And intensity has a significant impact. This is especially important for amplification reactions and is also important for detection methods based on binding between nucleic acids. Percent ❹ comPlementarity or complementation refers to the ratio of the number of mismatched bases to the total number of bases in one strand of the nucleic acid. Therefore, the complementarity rate means that half of the test bases are mismatched, while the other half of the test bases are matched. Even if the two strands of nucleic acid differ from the number of bases, the two strands of nucleic acid can complement each other. In this case, the complement occurs between a portion of the longer strands, the bases of the longer strands being paired with the base of the shorter strands. M, #(homologous homology^: means a polynucleotide sequence which is similar to a gene or mRNA sequence. For example, a nucleic acid sequence can be 69 201009074 can be partially or completely identical to a specific gene with all nucleotides and similar Nucleotide shows a 0 complementary checkout (comDlemetarv or mRNA sequence homology. A percentage table of the ratio of homologous acid numbers): Normally paired nuclear complementary nucleosides when DNA or RNA is opened into a double-strand configuration HfComDlemetarv Nucleotide Sequence): a single strand of molecule sufficient to specifically hybridize to iHvbirdize and Hvh DNA or RNA with the desired argon bond on two other strands The nucleotide sequences of the nucleotide sequences are complementary to be heterozygous in the same. Ridification: The formation of a duplex between the nuclear chronological sequences, which is sufficiently j-body. One of the primers (or the splicing model complex (or hybrid) is sufficient: the primer function required for DNA synthesis. Competitive inhibition (ie: non-random). Post-transcriptional gene silence fPosttr; The complexation formed by base pairing is "hybrid" with the target (template), thus implicitly providing a DNA polymerase to initiate a specific interaction between the two complementary polynucleotides (inscriptional Gene Silencine): In mRNA degradation or translation (knockout) or attenuation (knockdo\DNA transgenic genes or small suppression 1 ribonucleic acid interference (one of the gene knockout m under the RNA system) effect, which is usually either foreign / viral k RNA Inference, RNAi): - After squaring in nucleated cells, the transcriptional gene is silently triggered, which can be triggered by small RNA molecules, 201009074 eg microRNA (miRNA), small hairpin RNA (shRNA) and Small interfering ribonucleic acid (siRNA). Such small RNA molecules are generally useful as gene silencers that interfere with the expression of genes within a cell' comprising complete or partial complementation of such small RNa. ^^AMiA{Non-coding RNA): An RNA transcription molecule that cannot be used to synthesize peptides or proteins via an intracellular translation mechanism. A ribonucleic acid (AlieroRNA, miRJSiAl: a single-stranded RNAMiRNA capable of binding to a target gene transcriptional molecule that is partially complementary to the miRNA miRNA is typically about π to 27 oligonucleotides in length and can be compliant with the miRNA The degree of complementarity between mRNAs directly degrades the mRNA targets in their cells, or inhibits the protein translation of their underlying mRNAs. Natural miRNAs can be found in almost all eukaryotic cells, as one of the defenses against viral infections, It also allows for the expression of the gene during the development of plants and animals. ^ Pre-miRNA: a hairpin-type single-strand τ containing a stem-arm that interacts with intracellular RNasellll endonuclease (stem-arm) And a stem-loop region to produce one or more microRNAs (miRNAs) that silence the target gene complementary to the miniribonucleic acid sequences. A pre-miRNA stem structure can be formed - A perfect (100%) or partial (mismatched) hybrid duplex with its dry loop structure attached to one end of the dry arm duplex to form a circular or a hairpin-type annular configuration. 201009074 Small interfering ribose Small interfering RNA (siRMA): short double-stranded ribonucleic acid, which is a ribonucleotide duplex of about 18 to 25 perfect base pairs, and degrades a target gene transcription molecule with almost perfect complementation. Clip-type or short hairpin RNA (small hairDin hairpinRNA > shRNA): a single-stranded ribonucleic acid comprising a pair of partially or fully matched stem-arm nucleotide sequences Acid segmentation forms a type of hairpin structure. Many natural miRNAs are derived from hairpin-type RNA precursors, namely: precursor micronucleic acid (pre-miRNA). ® Dai. (Vector). Moving or stagnating in the environment - a recombinant nucleic acid composition such as: recombinant DNA (rDNA). In general, another nucleic acid molecule is operably linked here. The vector can be automatically replicated in a cell, wherein the vector And the attached fragments are also replicated. One type of preferred vector is an episome, a nucleic acid molecule that can be extrachromosomally replicated. Preferred vectors are those which automatically replicate and express nucleic acids. Ability to boot for one or more A vector encoding a polypeptide and/or a non-coding RNA encoding a gene is referred to herein as a "expression vector (expressi〇nvect〇r)." A particularly important vector allows for the selection of mRNAs produced by using a reverse transcriptase. cDNA A nucleotide sequence in a DNA molecule that encodes an amino acid residue sequence and includes upstream and downstream Α expression control elements. - Nucleic acid, which is recognized by a polymerase molecule 72 201009074, bonding) synthesis. For the purposes of the present invention, it is possible to synthesize the known polyhedral bonding sites, the protons, and any of the sequences available. And a peptide-protein molecule having a structure that encodes - bondable - a ligand that is pre-selected. Ο B. Composition—recombination minus composition 'turns on performance—separated Qin 3〇2 factor' and then induces m(tetra)2-mediated kemer in mammalian cell towels, the recombinant nucleic acid composition comprising: ” a) - recombination, a lean gene, wherein the transgenic gene is homologous to a member of the _3〇2 family, and a recombination non-linear; and b) - a competent candidate, the (iv) face can be used to transmit and express recombination in the mammalian 'animal cell The above-described recombinant transgenic gene further comprises: a) a plurality of exons wherein the exons are linked to form a transcriptional molecule having a desired function; and b) at least one An intron, wherein the intron comprises a recombinant mir_3〇2 homolog, and the exons can be excised via intracellular RNA splicing and processing mechanisms. 73 201009074 Introns of the above-mentioned re-spinning Steps include: a) for the splice junction - the five-terminal receptor frit position; b) "a gene silencing effector meson homologous to the members of the mir-302 family; c) for splice identification a branch point motif; d) one of the polypyrimidines used for splice interaction ; E) are bonded to one member of three-terminal splice acceptor splice site; and f) a plurality of sub-links, for which a 5-terminal end direction of the connection of each of these three components described above. Preferably, the gene silencing effector encodes a nucleic acid composition homologous to 5, _uaagugcuuc CAUGUUU-3' (SEQ. ID. N0.3). The five-terminal receptor splice site comprises a nucleotide sequence of any of 5'-GTAAGAGK-3, (SEQ.ID.N0.4) or GU(A/G)AGU motifs or homologous thereto (eg :5'-GTAAGAGGAT-3' (SEQ.ID.NO.37), 5'-GTAAGAGT-3', 5'-GTAGAGT-3, and 5,-GTAAGT-3,), and the three-terminal receptor splicing The line contains a GWKSCYRCAG CSEQ.ID.NCU;) or a nucleotide sequence of either the CT(A/G)A(C/T)NG motif or homologous thereto (eg, 5, _GATATCCTGC AG-3, (SEQ. ID. NO. 42), 5'-GGCTGCAG-3' and 5'-CCACAG-3'). In addition, a branch point sequence is located between the five-terminal splice site and the three-terminal splice site, and comprises a motif homologous to 5,-TACTWAY-3, (SEQ.ID.N0.6), such as : 5'-TACTAAC-3' and 5'-TACTTAT-3'. In addition, a multi-bite segment 74 201009074 is located near the branch point and the three-terminal splice position, which contains 5'-(TY)m(C/-)(T)nS(C/-)_3' (SEQ. ID. NO. 7) or a high τ or C content sequence homologous to any of 5'-(TC)nNCTAG(G/-)-3' (SEQ.ID.N0.8). The symbols "m" and "η" indicate a plurality of repetitions, y; more preferably, the number of 'm' is equal to 1 to 3 and the number of η is equal to 7 to 12. The symbol "-" means that one of the nuclei can be skipped in the sequence. According to the guidelines for the symbols and formats for nucleotide and/or amino acid sequence data in 37 CFR 1 822, the symbol W refers to an adenine (Α) or thymine ' T) / a pyrimidine ( Uraci b u), symbol κ refers to a bird 嗓吟 (guanine ' pyridine (Ty urination bite (u) ' symbol s refers to a cell or thymus money (T) / urine money (U). Chen Shangqi has The splice body is identified as 5 m Ηέΐ rtiivmin ______! ι · — cytosine ' C or guanine (G), symbol γ means cytosine (c) or thymine (T) / uracil (u) , symbol R refers to an adenine (A) or guanine (G) ' and symbol N refers to adenine (a), cytosine (c), guanine (G) sub-thymidine (thymine / Deoxythymidine, Τ) nucleotides can be replaced by uridine (U). ^ C. Method A method for transforming mammalian cells into pluripotent stem cells

之發育及細胞分化相關基因, 良數個由mir-302所標的 及H) —重組核酸組成 75 201009074 物’其可被傳送、轉錄並處理成在該細胞基質中與 mir-302同源的非編碼rnA ; b)在該細胞基質中之mir_3〇2_標的基因功能受抑制的條 件下’以該重組核酸組成物處理該細胞基質。 更佳地係,該重組核酸組成物係可表現一重組轉殖基 因之一藥物可誘發Γβ-〇«或Γβ-Ο#載體,其編碼一重組 mir-302 家族基因群(pre-mir-302s ; SEQ.ID.NO.29-SEQ.ID.NO.36之鏈結雜合物)或一人造重設 ❹ 之 mir-302 shRNA 同源物(SEQ.ID.NO.27 及 SEQ.ID.NO.28 之雜合物)。該細胞基質可用體外、離體(ex 或體内〇 νζ·νο)任一種方式來表現 pre-mir-3 02s/mir-3 02 shRNA及其標的基因。 實施例 以下實施例係作為舉例說明本發明之某些較佳具體實 ❹ 施例及態樣,其不應視為限制本發明之範疇。 在以下揭示之實驗文件中,所用的簡稱如下:Μ(莫 耳 ’ molar) ; mM(毫莫耳,millimoiar) ; (微莫耳, micromolar) ; mol(摩耳,moles) ; pmol(微微莫耳, picomolar) ; gm(公克,grams) ; mg(毫克,milligrams); pg(微 克 ’ micrograms) ; ng(奈克 ’ nanograms) ; L(公升,liters); ml(毫升,milliliters) ; μ1(微升,micr〇liters) ; °C(攝氏度, 76 201009074 degrees Centigrade) ; cDNA(DNA 之拷貝或互補;copy or complementary DNA) ; DNA(去氧核醣核酸, deoxyribonucleic acid) ; ssDNA(單股 DNA,single stranded DNA) ; dsDNA(雙股 DNA ’ double-stranded DNA); dNTP(去 * 氧核苷酸三構酸 ’ deoxyribonucleotide triphosphate); RNA(核醋核酸,ribonucleic acid) ; PBS(鱗酸鹽緩衝液, phosphate buffered saline); NaCl(氯化鈉,sodium chloride); HEPES(N-2-經乙基派嗪-N-2-乙烧確酸, ® N-2-hydroxyethylpiperazine-N-2-ethanesulfonic acid); HBS(HEPES 緩衝液,HEPES buffered saline) ; SDS(十二烧 基硫酸納 ’ sodium dodecylsulfate) ; Tris-HCl(三經曱基胺基 曱烧 -氫氯 化物 , tris-hydroxymethylaminomethane-hydrochloride) ; 及 ATCC(美國菌種培養中心,American Type Culture Collection,Rockville,MD)。 ❹ 實施例1 包含处重组RGFP基因之建族 以下列出用來生成包含同義、反義或髮夾型五介 子之办見似/内含子的合成寡核苷酸:同義Nl(Nl-sense), 5,-GTAAGAGGAT CCGATCGCAG GAGCGCACCA TCTTCTTCAA GA-3’ (SEQ.ID.NO.14);反義 N1(N1-antisense) , 5,-CGCGTCTTGA AGAAGATGGT GCGCTCCTGC GATCGGATCC TCTTAC-3, 77 201009074Developmental and cell differentiation-related genes, several of which are identified by mir-302 and H) - recombinant nucleic acid composition 75 201009074 'which can be transmitted, transcribed and processed to be homologous to mir-302 in the cell matrix Encoding rnA; b) treating the cell matrix with the recombinant nucleic acid composition under conditions in which the function of the mir_3〇2_ target gene in the cell matrix is inhibited. More preferably, the recombinant nucleic acid composition can express a recombinant transgenic gene which can induce a Γβ-〇« or Γβ-Ο# vector encoding a recombinant mir-302 family gene group (pre-mir-302s) ; SEQ.ID.NO.29- SEQ.ID.NO.36 chain hybrid) or an artificially reset ❹ mir-302 shRNA homolog (SEQ.ID.NO.27 and SEQ.ID. a hybrid of NO.28). The cell matrix can be expressed in vitro or ex vivo (ex or in vivo 〇νζ·νο) to express pre-mir-3 02s/mir-3 02 shRNA and its target gene. The following examples are intended to illustrate certain preferred embodiments and aspects of the invention and are not to be considered as limiting the scope of the invention. In the experimental documents disclosed below, the abbreviations used are as follows: Μ (mole' molar); mM (mole, millimoiar); (micromolar, micromolar); mol (mole, moles); pmol (pimo Ear, picomolar); gm (grams, grams); mg (mg, milligrams); pg (micrograms 'micrograms); ng (nike 'nangrams); L (liters, liters); ml (ml, milliliters); μ1 ( Microliter, micr〇liters); °C (degrees Celsius, 76 201009074 degrees Centigrade); cDNA (copy or complementary DNA; DNA (deoxyribonucleic acid); ssDNA (single strand of DNA, Single stranded DNA) ; dsDNA (double-stranded DNA); dNTP (deoxyribonucleotide triphosphate); RNA (ribonucleic acid); PBS (salt buffer) , phosphate buffered saline); NaCl (sodium chloride); HEPES (N-2-ethylpyrazine-N-2-ethene acid, ® N-2-hydroxyethylpiperazine-N-2-ethanesulfonic acid ); HBS (HEPES buffered saline, HEPES buffered saline); SDS (twelve burned sulfuric acid) 'Sodium dodecylsulfate); Tris-HCl (triple-ylamino Yue Yue burn - hydrogen chlorides, tris-hydroxymethylaminomethane-hydrochloride); and ATCC (American Culture Collection strain, American Type Culture Collection, Rockville, MD).实施 Example 1 Containing a family of recombinant RGFP genes Listed below are synthetic oligonucleotides used to generate a homologous/intron/intron containing synonymous, antisense or hairpin-type five-mesons: synonymous Nl (Nl-sense ), 5,-GTAAGAGGAT CCGATCGCAG GAGCGCACCA TCTTCTTCAA GA-3' (SEQ.ID.NO.14); antisense N1 (N1-antisense), 5,-CGCGTCTTGA AGAAGATGGT GCGCTCCTGC GATCGGATCC TCTTAC-3, 77 201009074

(SEQ.ID.NO. 15);同義 N2 , 5,-GTAAGAGGAT CCGATCGCTT GAAGAAGATG GTGCGCTCCT GA_3, (SEQ.ID.NO. 16);反義 N2 , 5’-CGCGTCAGGA GCGCACCATC TTCTTCAAGC GATCGGATCC(SEQ.ID.NO. 15); synonymous N2, 5,-GTAAGAGGAT CCGATCGCTT GAAGAAGATG GTGCGCTCCT GA_3, (SEQ.ID.NO. 16); antisense N2, 5'-CGCGTCAGGA GCGCACCATC TTCTTCAAGC GATCGGATCC

TCTTAC-3,(SEQ.ID.NO.17);同義 N3,5,-GTAAGAGGAT CCGATCGCAG GAGCGCACCA TCTTCTTCAATCTTAC-3, (SEQ.ID.NO.17); synonymous N3,5,-GTAAGAGGAT CCGATCGCAG GAGCGCACCA TCTTCTTCAA

GTTAACTTGA AGAAGATGGT GCGCTCCTGA_3’ (SEQ.ID.NO. 18);反義 N3 , 5’-CGCGTCAGGA GCGCACCATC TTCTTCAAGT TAACTTGAAGGTTAACTTGA AGAAGATGGT GCGCTCCTGA_3' (SEQ.ID.NO. 18); antisense N3, 5'-CGCGTCAGGA GCGCACCATC TTCTTCAAGT TAACTTGAAG

AAGATGGTGC GCTCCTGCGA TCGGATCCTC TTAC-3, (SEQ.ID.NO.19);同義 N4 , 5’-CGCGTTACTA ACTGGTACCT GTTCTTTTTT TTTTTGATATAAGATGGTGC GCTCCTGCGA TCGGATCCTC TTAC-3, (SEQ.ID.NO.19); Synonymous N4, 5'-CGCGTTACTA ACTGGTACCT GTTCTTTTTT TTTTTGATAT

CCTGCAG-3, (SEQ.ID.NO.20);反義 N4 , 5,-GTCCTGCAGG ATATCAAAAA AAAAAGAAGA GGTACCAGTT AGTAA-3, (SEQ.ID.NO.21)。從 SEQ.ID.NO. 14-SEQIDN0.21所列出之所有序列在其五端 皆經磷酸根化。 此外’兩個RGFP外顯子係藉由在一紅色螢光AGFP 基因(SEQ.ID.NO.22)之第208個核苦酸(nt)位酶切Drfl//限 制酶來生成。該五端及外顯子進一步地以t4 DNA聚 合酶來使端點鈍化(blunt-ended)。關聯一新穎紅色色偏螢光 色素蛋白質基因之係藉由自紫點海葵 rnipo ’ BD Biosciences,CA)分離之 HcRedl 色素蛋白質的 第69個胺基酸(amino acid,a,a.)位插入一額外之天門冬胺 78 201009074 酸(aspartate)來生成’其造成較少之聚集以及幾乎兩倍強度 之波長570-nm的紅外線螢光放射。 - 同義 Nl-sense 至反義 N1-antisense、同義 N2_sense 至 反義 N2-antisense、同義 N3-sense 至反義 N3-antisense、以 及同義N4-sense至反義N4-antisense之雜合分別以下列步 驟實行:將每一同義及反義(1:1)序列之互補混合物加熱至 94°C兩分鐘,然後置於70°C的1倍PCR緩衝液中10分CCTGCAG-3, (SEQ. ID. NO. 20); antisense N4, 5, -GTCCTGCAGG ATATCAAAAA AAAAAGAAGA GGTACCAGTT AGTAA-3, (SEQ.ID.NO.21). All sequences listed from SEQ. ID. NO. 14 - SEQ ID NO. 11 were phosphated at their five ends. Furthermore, the two RGFP exons were generated by digesting Drfl// restriction enzyme at the 208th nucleotide (nt) position of a red fluorescent AGFP gene (SEQ. ID. NO. 22). The five-terminal and exon are further blunt-ended with t4 DNA polymerase. The 69th amino acid (a, a.) insertion of the HcRedl pigment protein isolated from a novel red-chromophoric pigment protein gene by a purple anemone rnipo 'BD Biosciences, CA) An additional aspartame 78 201009074 acid (aspartate) to generate 'infrared fluorescence emissions that cause less aggregation and nearly twice the intensity of the wavelength of 570-nm. - synonymous Nl-sense to antisense N1-antisense, synonymous N2_sense to antisense N2-antisense, synonymous N3-sense to antisense N3-antisense, and synonymous N4-sense to antisense N4-antisense Practice: Heat each complementary mixture of synonymous and antisense (1:1) sequences to 94 ° C for two minutes, then place in 10 times of PCR buffer at 70 ° C for 10 minutes

❹ 鐘(例如:50 mM Tris-HCl,pH 9.2,25。(: ; 16 mM (NHASO4 ·’ 1.75 mM MgCb)。之後立即在1小時期間内, 藉由把N1+N4、N2+N4或N3+N4(l:l)雜合之混合物從5〇。〇 分別逐漸地冷卻至10°C,以執行Nl、N2或N3雜合物與 N4雜合物的序列接合,然後將I DNA接合酶及緩衝液 (Roche,IN)加進該混合物中並在12。(:下一起培育12小 時。此可形成該等办内含子。其後,將該等兩個 外顯子加進該反應中(1:1:1),並相應地調整τ4 DNA接合 © 酶及緩衝液以在下再次進行該接合反應12小時。 關於選殖正確重組之SpRNAi插入 基因方面,以一對特異性引子 5 ’ -CTCGAGC ATG GTGAGCGGCC TGCTGAA-3,❹ Clock (eg: 50 mM Tris-HCl, pH 9.2, 25. (: ; 16 mM (NHASO4 · ' 1.75 mM MgCb). Immediately thereafter, within 1 hour, by using N1+N4, N2+N4 or N3 +N4 (l:l) hybrid mixture from 5 〇. 〇 gradually cooled to 10 ° C, respectively, to perform sequence ligation of Nl, N2 or N3 hybrids with N4 hybrid, then I DNA ligase And a buffer (Roche, IN) was added to the mixture and incubated for 12 hours at 12: (this can form these introns. Thereafter, the two exons are added to the reaction. Medium (1:1:1), and adjust the τ4 DNA junction© enzyme and buffer accordingly to carry out the ligation reaction for another 12 hours. For the selection of the correct recombinant SpRNAi insertion gene, a pair of specific primers 5' -CTCGAGC ATG GTGAGCGGCC TGCTGAA-3,

(SEQ.ID.NO.23)及 5,-TCTAGAAGTT GGCCTTCTCG GGCAGGT-3’(SEQ.ID.NO.24)藉由 PCR 來擴增 1〇 ng 之接 合序列,其係在94°C進行一分鐘,在52_57。(:進行一分鐘, 然後在68。(:進行兩分鐘,共進行25至3〇個循環^將所得 79 201009074(SEQ.ID.NO.23) and 5,-TCTAGAAGTT GGCCTTCTCG GGCAGGT-3' (SEQ.ID.NO.24) Amplification of 1 ng of the junction sequence by PCR, which was performed at 94 ° C for one minute. At 52_57. (: One minute, then at 68. (: Two minutes, a total of 25 to 3 cycles ^ will be obtained 79 201009074

之PCR產物在一 2%洋菜膠上層析,然後使用一膠體萃取 工具(Qiagen ’ CA)來萃取及純化一 9〇〇到11〇〇鹼基對(bp) 之核苷酸序列。藉由定序進一步確認此〜的 及GFP基因之組成物。較佳地’在沒有内含子插入 下’該办凡/^·内含子序列之同義股係5,_GTAAGTGGTC CGATCGTCGC GACGCGTCAT TACTAACTATThe PCR product was chromatographed on a 2% acacia gum, and then a nucleotide extraction sequence (Qiagen 'CA) was used to extract and purify a nucleotide sequence of 9 〇〇 to 11 〇〇 base pair (bp). The composition of the ~ and GFP genes was further confirmed by sequencing. Preferably, in the absence of an intron insertion, the synonymous strand of the genus / ^ · intron sequence 5, _GTAAGTGGTC CGATCGTCGC GACGCGTCAT TACTAACTAT

CAATATCTTA ATCCTGTCCC TTTTTTTTCC ACAGTAGGAC CTTCGTGCA-3’(SEQ.ID.NO.25),而該CAATATCTTA ATCCTGTCCC TTTTTTTTCC ACAGTAGGAC CTTCGTGCA-3' (SEQ.ID.NO.25), and

φ及篇ζ·内含子序列之反義股係5,_tgcacgaagg TCCTACTGTG GAAAAAAAAG GGACAGGATTφ and the inversion of the intron sequence 5,_tgcacgaagg TCCTACTGTG GAAAAAAAAG GGACAGGATT

A AG ATATTG A TAGTTAGTAA TGACGCGTCG CGACGATCGG ACCACTTAC-3’(SEQ.ID.NO.26)。 在其它實施例中,該重組轉殖基因可藉 由接合具有Dm//切開及GFP外顯子之限制片段之 SEQ.ID.N0.25與SEQ.ID.NO.26的雜合物你皿來直接 製成,並依以上所示之相同操作程序處理。依此方式形成 用以測試該人造重設之mir-302 shRNA介子(編碼 SEQ.ID.N0.9)的办皿轉殖基因。 由於該重組办及AW-及GFP轉殖基因在其五端及三端 分別具有一又Μ/及一 Xk/限制位,其可容易地被選殖至 具有黏著至該等X/w/與選殖位之黏著端的一載體 中。該載體必須是一表現勝任有機體或子有機體,其係選 自DNA轉殖基因、質體、跳躍基因、轉位子及病毒載體 201009074 組成之群。此外’由於在該内含子内之插入位係分別在其 五端及三端以一尸vw/及一 Mw/限制位為側翼,吾人可移 除及取代具有另一不同之插入序列的内含子介子,該不同 之插入序列具有黏著至該等PvwJ及Mw/選殖位之黏著 端。該插入序列較佳地係類髮夾型基因靜默效應子,其對 一標的基因具有高互補度,該標的基因係選自螢光蛋白質 (GFP)基因、螢光酵素基因、lac-Z乳糖表現基因、病毒基 因、細菌基因、植物基因、動物基因及人類基因組成之群。 在該基因靜默效應子及其標的基因間的互補及/或同源比 率係在約30%-100%的範圍内,更佳地係用於一髮夾型 shRNA介子之範圍35°/〇-49%,及用於同義RNA及反義 RNA介子兩者之範圍90%-100%。 實施例2 將該等基因選殖至一裊現塍任盤艚中以尨鮮番 狃mir-302同源物插入該办及jVAVRGFP某因中 由於該重組轉殖基因在其五端及三端 分別具有一尤及一勒α/限制位,其可輕易地被選殖進 一載體中,該載體具備黏著至該等ΧΑο/及限制位的 相對黏著端。如圖3A所示,吾人將該办兄轉殖 基因以1:1重量比(w/w)合併至一 線性化 (linearized)〜6,900七卩/?7^-〇?247^的質體中’將該混合物在 50分鐘之一期間内自65°C冷卻至15。0然後相應地將τ4 接合酶及緩衝液加進該混合物中以在12°C下接合12小 81 201009074 時。此形成了 一可誘發办兄AW-及GF尸表現载體。以 特異性引子SEQ.ID.N0.23及SEQ ID N〇 24藉由pCR來 確認該載體之組成物,其在94°C下進行一分鐘,然後在 68°C下進行兩分鐘’共進行3〇個循環,再進一步地定序。 在選瘦至一病毒載體中方面,除了使用一义線性 ’ 化尸UVCX2反轉錄病毒载體(BD Clontech)來代替之外,其 餘進行相同之限制及接合程序。由於該办兄兄心内含子之 插入位在其五端及三端分別以一 pvw/及一 限制位為 側翼’吾人可移除及取代具有一人造重設^^302 shRNA ® 介子之anti-五GFP shRNA介子,該人造重設mir-3 02 shRNA 介子具有黏著至該等Pvw/及Mw/選殖位的黏著端。該重 設 mir-302 shRNA 介子包含與 5,-UAAGUGCUUC CAUGUUU-3’(SEQ.ID.N0.3)同源的一序列,其包括: 5’-UAAGUGCUUC CAUGUUUUAG UGU-3, (SEQ.ID.N0.9)、5,-UAAGUGCUUC CAUGUUUUGG UGA-3’ (SEQ.ID.NO. 10) 、 5,-UAAGUGCUUC ^A AG ATATTG A TAGTTAGTAA TGACGCGTCG CGACGATCGG ACCACTTAC-3' (SEQ. ID. NO. 26). In other embodiments, the recombinant transgene can be hybridized by SEQ. ID. N0.25 and SEQ. ID. NO. 26 with a restriction fragment of Dm//cut and GFP exon. It is made directly and processed according to the same operating procedure as shown above. In this manner, a transgenic gene for the artificially reset mir-302 shRNA meson (encoding SEQ. ID. N0.9) was formed. Since the recombination and AW- and GFP transgenes have a scorpion/and an Xk/restriction at their five and three ends, respectively, they can be easily colonized to have adhesion to the X/w/ A carrier in the adhesive end of the colony. The vector must be a competent organism or a sub-organism selected from the group consisting of a DNA transgene, a plastid, a jumping gene, a transposon, and a viral vector 201009074. In addition, since the insertion position in the intron is flanked by a corpse vw/ and a Mw/limit at its five and three ends, we can remove and replace the insertion with a different insertion sequence. With a meson, the different insert has an adhesion to the PvwJ and Mw/selection sites. Preferably, the insertion sequence is a hairpin-type gene silencing effector having high complementarity to a target gene selected from the group consisting of a fluorescent protein (GFP) gene, a fluorescent enzyme gene, and a lac-Z lactose expression. A group of genes, viral genes, bacterial genes, plant genes, animal genes, and human genes. The complementarity and/or homology ratio between the gene silencing effector and its target gene is in the range of about 30%-100%, and more preferably in the range of 35°/〇 for a hairpin type shRNA meson- 49%, and for both synonymous RNA and antisense RNA mesons range from 90% to 100%. Example 2 The genes were cloned into a scorpion scorpion scorpion mir-302 homologue inserted into the plant and jVAVRGFP due to the recombinant transgene in its five-terminal and three-terminal Each has a specific alpha/limit, which can be easily colonized into a carrier having a relatively adhesive end that adheres to the ΧΑο/ and the restriction. As shown in Figure 3A, we combined the transgenic genes into a linearized ~6,900 卩/?7^-〇?247^ plastid in a 1:1 weight ratio (w/w). 'The mixture was cooled from 65 ° C to 15.0 during one of 50 minutes and then τ4 ligase and buffer were added to the mixture accordingly to join 12 small 81 201009074 at 12 °C. This formed a vector that can induce the brothers AW- and GF corpse. The composition of the vector was confirmed by pCR with specific primers SEQ.ID.N0.23 and SEQ ID N〇24, which were carried out at 94 ° C for one minute and then at 68 ° C for two minutes. 3 loops, further sequencing. In the selection of the lean to one viral vector, the same restriction and ligation procedure was carried out except that the unambiguous linear ' cadaveric UVCX2 retroviral vector (BD Clontech) was used instead. Since the inserting position of the brother's intron is flanked by a pvw/ and a limit at its five and three ends respectively, we can remove and replace the anti with a man-made reset ^^302 shRNA ® meson - Five GFP shRNA mesons, the artificially relocated mir-3 02 shRNA meson has adhesion to the Pvw/ and Mw/selection sites. The reset mir-302 shRNA meson comprises a sequence homologous to 5,-UAAGUGCUUC CAUGUUU-3' (SEQ.ID.N0.3), which comprises: 5'-UAAGUGCUUC CAUGUUUUAG UGU-3, (SEQ.ID. N0.9), 5,-UAAGUGCUUC CAUGUUUUGG UGA-3' (SEQ.ID.NO. 10), 5,-UAAGUGCUUC ^

O CAUGUUUUAG UAG-3’ (SEQ.ID.NO.il) 、 5’-UAAGUGCUUC CAUGUUUCAG UGG-3, (SEQ.ID.N0.12)、或 5,-UAAGUGCUUC CAUGUUUGAG UGU-3’(SEQ.ID.N0.13)。更佳地係’該重設 mir-302 shRNA 介子包含 5,-UAAGUGCUUC CAUGUUUUAG UGU-3, (SEQ.ID.N0.9)。換句話說,該基因靜默效應子包括至少一 個重組 RNA 序列,其與 SEQ.ID.N0.9、SEQ.ID.NO. 10、 SEQ.ID.NO.n、SEQ.ID.N0.12、SEQ.ID.N0.13、及其一組 82 201009074 合組成之群同源。O CAUGUUUUAG UAG-3' (SEQ.ID.NO.il), 5'-UAAGUGCUUC CAUGUUUCAG UGG-3, (SEQ.ID.N0.12), or 5,-UAAGUGCUUC CAUGUUUGAG UGU-3' (SEQ.ID. N0.13). More preferably, the reset mir-302 shRNA meson comprises 5,-UAAGUGCUUC CAUGUUUUAG UGU-3, (SEQ.ID.N0.9). In other words, the gene silencing effector comprises at least one recombinant RNA sequence which is SEQ.ID.N0.9, SEQ.ID.NO.10, SEQ.ID.NO.n, SEQ.ID.N0.12. SEQ. ID. N0.13, and a set of 82 201009074 group homologs.

以下列出用於該重組mir-302家族pre-miRNA或該人 造重設mir-302 shRNA介子之DNA重組的合成募核普酸: 同義 mir-302a , 5’-GTCCGATCGT CCCACCACTT AAACGTGGAT GTACTTGCTT TGAAACTAAA GAAGTAAGTG CTTCCATGTT TTGGTGATGG ATCTCGAGCT C-3,(SEQ.ID.NO.29);反義 mir-3〇2a,The synthetic nucleosides for DNA recombination of the recombinant mir-302 family pre-miRNA or the artificially-reset mir-302 shRNA meson are listed below: Synonymous mir-302a, 5'-GTCCGATCGT CCCACCACTT AAACGTGGAT GTACTTGCTT TGAAACTAAA GAAGTAAGTG CTTCCATGTT TTGGTGATGG ATCTCGAGCT C-3, (SEQ.ID.NO.29); antisense mir-3〇2a,

5,-GAGCTCGAGA TCCATCACCA AAACATGGAA GCACTTACTT CTTTAGTTTC AAAGCAAGTA CATCCACGTT TAAGTGGTGG GACGATCGGA C-3, ❹5,-GAGCTCGAGA TCCATCACCA AAACATGGAA GCACTTACTT CTTTAGTTTC AAAGCAAGTA CATCCACGTT TAAGTGGTGG GACGATCGGA C-3, ❹

(SEQ.ID.NO.30); CGCTCCCTTC TTCTGTGACT GTTTTAGTAG (SEQ.ID.NO.31); GACTCCTACT TTCAAAGTCA AAGTTGAAGG (SEQ.ID.NO.32); ACCTTTGCTT TGTGAAACAG(SEQ.ID.NO.30); CGCTCCCTTC TTCTGTGACT GTTTTAGTAG (SEQ.ID.NO.31); GACTCCTACT TTCAAAGTCA AAGTTGAAGG (SEQ.ID.NO.32); ACCTTTGCTT TGTGAAACAG

同義 mir-302b,5,-ATCTCGAGCTSynonymous mir-302b,5,-ATCTCGAGCT

AACTTTAACA TTGAAAGTAA GAGTCGCTAG TGGAAGTGCT GTGCTTCCAT CGCTA-3’AACTTTAACA TTGAAAGTAA GAGTCGCTAG TGGAAGTGCT GTGCTTCCAT CGCTA-3’

反義 mir-302b , 5’-TAGCGCTAGCAntisense mir-302b , 5’-TAGCGCTAGC

AAAACATGGA CAGAAAGCAC GAGCGAGCTC AGCACTTACT TTCCATGTTA GAGAT-3,AAAACATGGA CAGAAAGCAC GAGCGAGCTC AGCACTTACT TTCCATGTTA GAGAT-3,

同義 mir-302c,5’-CGCTAGCGCTSynonymous mir-302c, 5’-CGCTAGCGCT

TAACATGGAG AAGTAAGTGCTAACATGGAG AAGTAAGTGC

GTACCTGCTG TTCCATGTTT CAGTGGAGGC GTCTAGACAT-3,(SEQ.ID.NO.33);反義GTACCTGCTG TTCCATGTTT CAGTGGAGGC GTCTAGACAT-3, (SEQ.ID.NO.33); antisense

mir-302c , 5,-ATGTCTAGAC GCCTCCACTGMir-302c , 5,-ATGTCTAGAC GCCTCCACTG

AAACATGGAA GCACTTACTT CTGTTTCACA 83 201009074 AGCGCTAGCG-3’ (SEQ.ID.NO.34);AAACATGGAA GCACTTACTT CTGTTTCACA 83 201009074 AGCGCTAGCG-3' (SEQ.ID.NO.34);

CAGCAGGTACCAGCAGGTAC

5,-CGTCTAGACA ACTTAGCTAA5,-CGTCTAGACA ACTTAGCTAA

CTCCATGTTACTCCATGTTA

TAACACTCAATAACACTCAA

GCCAGGCTAAGCCAGGCTAA

AAGCAAAGGT 同義 mir-302d, ACATGGAAGC GTGCTTCCATAAGCAAAGGT Synonymous mir-302d, ACATGGAAGC GTGCTTCCAT

GTTTGAGTGTTCGACGCGTCAT-3’(SEQ.ID.N0.35);反 義 mir-302d , 5,-ATGACGCGTC GAACACTCAAGTTTGAGTGTTCGACGCGTCAT-3' (SEQ.ID.N0.35); antisense mir-302d, 5,-ATGACGCGTC GAACACTCAA

ACATGGAAGC ACTTAGCCTG GCTTAGCTAAACATGGAAGC ACTTAGCCTG GCTTAGCTAA

GTGCTTCCAT GTTTGAGTGT TATGTCTAGA CG-3, (SEQ.ID.NO.36);及同義 miR-302s,5,-GTCCGATCGT CATAAGTGCT TCCATGTTTT AGTGTGCTAAGTGCTTCCAT GTTTGAGTGT TATGTCTAGA CG-3, (SEQ.ID.NO.36); and synonymous miR-302s,5,-GTCCGATCGT CATAAGTGCT TCCATGTTTT AGTGTGCTAA

GCCAGGCACA CTAAAACATG GAAGCACTTAGCCAGGCACA CTAAAACATG GAAGCACTTA

TCGACGCGTC AT-3,(SEQ.ID.NO.27);反義 mir-302s, 5,-ATGACGCGTC GATAAGTGCT TCCATGTTTT AGTGTGCCTG GCTTAGCACA CTAAAACATG GAAGCACTTA TGACGATCGG AC-3,(SEQ.ID.NO.28) (Sigma-Genosys,MO)。所有該等合成序列係在接合之前 以PAGE膠體萃取來純化。換句話說,該基因靜默效應子 係以 SEQ.ID.NO.29、SEQ.ID.NO.30、SEQ.ID.NO.31、 SEQ.ID.NO.32、SEQ.ID.NO.33 、SEQ.ID.NO.34、 SEQ.ID.NO.35、SEQ.ID.NO.36、及其一組合的雜合物之接 合鏈結來形成。 該重組mir-302家族pre-miRNA基因群係以四組 mir-302a-d雜合物之鏈結來形成,包括:同義mir_3〇2a與 反義mir-3〇2a、同義mir-302b與反義mir_3〇2b、同義 84 201009074 mir-302c與反義mir-302c、以及同義mir-302d與反義 mir-302d。該等 mir-302a、mir-302b、mir-302c、及 mir-302d t魏合物令私认 PvuIlXhoI、XhoIlNhel、NhellXbal、JSl ;Ώ)β//Μ/ζ//限制酶來解消,並在35 μΐ高壓蒸氣滅菌二次水 (autoclaved ddH20)中藉由一膠體萃取過濾柱(gel extraction filter column) (Qiagen,CA)收集在一起〇之後,立即將該 等混合之雜合物接合以形成具T4 DNA接合酶之mir-302 家族pre-miRNA介子的一基因群(Roche,20U),並進一步 地插入該等尸vw//Mw/線性化及GFP表現載體中。 在其它實施例中,該人造重設mir-302 shRNA係藉由雜合 SEQ.ID.NO.27及SEQ.ID.NO.28的兩個合成序列來製成, 然後以Pv 限制酶切開以插入該等pvw//M/w/線性化 表現載體中。依循圖2A及圖2B所列之程 序,包含該重組mir-302 家族pre-miRNA(即: pTet-On-tTS-mir302s)之可誘發 SpRNAi-RGFP 表現載馥係 基因轉殖地被傳送進hHFC細胞内,然而包含該重設 mir-302 shRNA之載體則係被引進Colo 829細胞内。 該等5^见4/-及GF尸表現載體可繁殖進包含100 pg/ml 之安比西林的五·〇?// DH5a LB培養液中(Sigma Chemical, St Louis,MO)。該等繁殖之表現載體係使 用一小量製備(mini-prep)或大量製備(maxi-prep)之質體萃 取工具(Qiagen,CA)來分離及鈍化。在;反轉錄病 毒載體方面,吾人也可使用一包裝細胞株 GP2-293(Clontech,CA)以製造有感染力但無法自我複製 85 201009074 (replication-incompetent)的病善。該等轉染之 GP2_293 細胞 係在37°C及5% C02下於1倍之DMEM培養液中生長, 該培養液的補充成分為10%炭吸附胎牛血清(FBS),其含有 4 mM L-麵醯胺、1 mM丙酮酸納、100 pg/ml硫酸鏈黴素 (streptomycin sulfate)及 50 pg/ml 新黴素(Sigma Chemical, MO)。依照一 retto-XqRT-PCR 滴定工具(Clontech,CA)的 操作程序,病毒滴定量在轉染前經測量係超過感染複數 (multiplicity of infection,MOI)30。 實施例3 mir-302s之細胞培卷及基因韓殖樽迭 人類癌症PC3及Colo 829細胞株係取自美國菌種培養 中心(ATCC,Rockville,MD),而 hHFC 及 hpESC 細胞係 分別以膠原蛋白酶/胰蛋白酶(4:1)分解2至10個頭髮毛囊 根或外殖自本發明者之頭髮或手臂的2 mm3皮膚來製備。 在37°C及5% C02下之RPMI 1640培養液中培養該等細 胞’該培養液的補充成分為1〇。/。胎牛血清(FBS)、4mML-麩醯胺、1 mM丙酮酸納及1〇〇 pg/ml健他黴素(Sigma Chemical ’ MO)。藉由將細胞暴露在trypsin-EDTA溶液1 分鐘並以RPMI淋洗一次,以及將該等分離之細胞在ι:ι〇 稀釋度下於新鮮的培養基(growth medium)中重新覆蓋 (replate),來製成70%〜80%滿盤的培養物。關於以電穿孔 法基因轉殖mir-302s傳送方面,該載 體(10-30 pg)與該等宿主細胞(200-2000)在一低滲性PH缓 86 201009074 衝液(400 μΐ ; Eppendorf)中混合,且電穿孔法係在4〇〇_45〇 伏特下實行100微秒以將該载體傳送進該等宿主細胞基因 體内。在72小時後分離並收集正向基因轉殖的mirps細 . 胞’使用FACS流式細胞計數儀經anti_RGFP單株抗體來 篩選細胞(圖3C)。此新穎mir-302s基因轉殖方法的成功率 經測量超過91% 〇 在其它實施例中,在反轉錄病毒载體傳送方面,吾人 ❹ 首先培養P厂共轉牵GP2-293細胞(Clontech,CA),其 具有包含一重組mir-302家族pre-miRNA介子之TCGACGCGTC AT-3, (SEQ.ID.NO.27); antisense mir-302s, 5,-ATGACGCGTC GATAAGTGCT TCCATGTTTT AGTGTGCCTG GCTTAGCACA CTAAAACATG GAAGCACTTA TGACGATCGG AC-3, (SEQ.ID.NO.28) (Sigma-Genosys, MO). All of these synthetic sequences were purified by PAGE colloid extraction prior to conjugation. In other words, the gene silencing effector has SEQ.ID.NO.29, SEQ.ID.NO.30, SEQ.ID.NO.31, SEQ.ID.NO.32, SEQ.ID.NO.33 A junctional link of a hybrid of SEQ. ID. NO. 34, SEQ. ID. NO. 35, SEQ. ID. NO. 36, and a combination thereof is formed. The recombinant mir-302 family pre-miRNA gene group is formed by four groups of mir-302a-d hybrids, including: synonymous mir_3〇2a and antisense mir-3〇2a, synonymous mir-302b and anti-义 mir_3〇2b, synonym 84 201009074 mir-302c and antisense mir-302c, and synonymous mir-302d and antisense mir-302d. These mir-302a, mir-302b, mir-302c, and mir-302d t-complexes allow PvuIlXhoI, XhoIlNhel, NhellXbal, JSl; Ώ)β//Μ/ζ// restriction enzymes to be eliminated, and After 35 μl of autoclaved ddH20 was collected by a gel extraction filter column (Qiagen, CA), the mixed hybrids were immediately joined to form a A gene group (Roche, 20 U) of the mir-302 family pre-miRNA meson of T4 DNA ligase, and further inserted into these cadaver vw//Mw/linearization and GFP expression vectors. In other embodiments, the artificially reprogrammed mir-302 shRNA is made by hybridizing two synthetic sequences of SEQ.ID.NO.27 and SEQ.ID.NO.28, and then cleaved with Pv restriction enzyme To insert these pvw//M/w/linearization expression vectors. According to the procedure set forth in Figures 2A and 2B, the inducible SpRNAi-RGFP expression containing the recombinant mir-302 family pre-miRNA (i.e., pTet-On-tTS-mir302s) is transmitted to the hHFC Intracellular, however, the vector containing the mir-302 shRNA was introduced into Colo 829 cells. The 5^ see 4/- and GF cadaveric expression vectors can be propagated into a medium containing 500 pg/ml of ampicillin in DH5a LB medium (Sigma Chemical, St Louis, MO). Such propagated expression vectors are isolated and inactivated using a mini-prep or maxi-prep plastid extraction tool (Qiagen, CA). In terms of retroviral vectors, we can also use a packaging cell line, GP2-293 (Clontech, CA), to create an infectious but not self-replicating 85 201009074 (replication-incompetent). The transfected GP2_293 cell line was grown in 1x DMEM medium at 37 ° C and 5% CO 2 . The supplement of the medium was 10% carbon adsorbed fetal bovine serum (FBS) containing 4 mM L - Facial amine, 1 mM sodium pyruvate, 100 pg/ml streptomycin sulfate, and 50 pg/ml neomycin (Sigma Chemical, MO). According to the procedure of a retto-XqRT-PCR titration tool (Clontech, CA), the virus titer was measured by the multiplicity of infection (MOI) 30 before transfection. Example 3 Cell Culture and miRNA of mir-302s Human cancer PC3 and Colo 829 cell lines were obtained from the American Culture Center (ATCC, Rockville, MD), while hHFC and hpESC cell lines were collagenase, respectively. / Trypsin (4:1) is prepared by decomposing 2 to 10 hair follicle roots or 2 mm3 skin explanted from the hair or arm of the inventors. The cells were cultured in RPMI 1640 medium at 37 ° C and 5% CO 2 . The supplement of the medium was 1 〇. /. Fetal bovine serum (FBS), 4 mM L-bromoamide, 1 mM sodium pyruvate and 1 〇〇 pg/ml statin (Sigma Chemical ' MO). The cells were exposed to trypsin-EDTA solution for 1 minute and rinsed once with RPMI, and the isolated cells were re-plated in fresh medium (growth medium) at a ι:ι dilution. Make a 70% to 80% plate full of culture. Regarding the transfer of mir-302s by electroporation, the vector (10-30 pg) was mixed with the host cells (200-2000) in a hypotonic pH buffer 86 201009074 (400 μΐ; Eppendorf). And the electroporation method was carried out for 100 microseconds at 4 〇〇 45 volts to deliver the vector into the host cell genes. After 72 hours, the positive gene-transferred mirps was isolated and collected. The cells were screened by anti-RGFP monoclonal antibody using a FACS flow cytometer (Fig. 3C). The success rate of this novel mir-302s gene transfer method was measured to exceed 91%. In other examples, in the delivery of retroviral vectors, we first cultured P plants to transfer GP2-293 cells (Clontech, CA). ) having a recombinant mir-302 family pre-miRNA meson

SpRNAi-RGFP插人pLNCJQ瓦轉錄病毒氧體。在3Ί°(:及 5% C〇2下培育36小時後’過濾該等GP2-293細胞之培養 基(每一培養基10ml) (0.25 μιη)並於37。<:及5% C〇2下將其 直接轉移到該等受測試之細胞培養物内持續12小時。其 後’加入新鮮之mirPS細胞培養基來代替該病毒培養基, 每三天置換一次。由於該等培養基包含極高之設計反轉錄 ® 病毒載體的滴定量,幾乎所有的受測細胞(99.4%-99·8°/〇)儀 由該等载體基因轉殖地瘃染,並在24小時内開始表現該等 内含子介子及RGFP。在感染後24小時分離並收集正向基 因轉殖的mirPS細胞,使用FACS流式細胞計數儀經 anti-RGFP單株抗體(clontech,ca)來分類細胞。 實施例4 北方點墨分拼法 在1°/❶甲醛-洋菜膠上分餾所有RNAs(20昭)並轉移至 87 201009074 尼龍膜(nylon membrane,Schleicher & Schuell,Keene,NH) 上。合成LNA-DNA探針(sigma_Genosys,MO)可補足位 於在該等及OTP五端外顯子之間或在所設計之 pre_miRNA/shRNA介子處側面的75-bp接面序列,或補足 一標的基因轉錄分子,該等合成之LNA-DNA探針係用 Prime-It II 工具(Stratagene,La Jolla,CA)在[32P]_dATP 出 現下以隨機引子延伸來標示([32p]_dATP > 3000 Ci/mM, Amersham Internationa卜 Arlington Heights,IL),並以 1〇 bp-cutoff Micro Bio-Spin 層析管柱(Bio-Rad,Hercules,CA) ❹ 來純化。雜合係在50%的新鮮去離子甲醯胺(freshly deionized formamide,pH 7.0)、5 倍 Denhardt 溶液、0.5% SDS、4倍SSPE及250 mg/mL的變性鮭魚精子DNA片段 (18小時,42°C)的混合物中進行。在自動放射照相術 (autoradiography)之前將膜在 2 倍 SSC、0.1%的 SDS(15 分 鐘,250C)中連續清洗兩次,並在0.2倍SSC、0.1%的SDS(45 分鐘’ 37。〇中清洗一次。圖4B及6B中顯示該等結果。 _ 實施例5 gDS-PAGE及西方點暴分妍法 對於標的蛋白質之免疫點墨法(immunoblotting)(圖8C 及9B),在移除培養基之後以冰冷PBS淋洗約〜70%滿盤之 分離細胞,然後溶解一 CelLytic-M溶解/萃取試劑 (lysis/extraction reagent,Sigma-Aldrich,MO),其補充成 刀為蛋白酶抑制劑(protease inhibitor)、Leupeptin、TLCK、 88 201009074 TAME及PMSF。該等細胞係在室溫下於一震動器⑽ 上培育15分鐘,之後將其刮到微量離心管(micr〇tube)内, 然後在12,000xg下離心5分鐘以將該細胞碎片製成粒狀。 收集包含蛋白質之細胞溶解產物並在一7〇〇C下儲存備用。 以SOFTmax套裝軟體在一 E-max微量盤測讀儀(micropiate reader,Molecular Devices,Sunnyvale,CA)上測量蛋白質 定量。在還原(reducing,+50 mM DTT)及非還原 (non-reducing,無DTT)的條件下,將每30吨之細胞溶解 產物加入SDS-PAGE樣本緩衝液中,並在裝載到之 聚丙烯醯胺凝膠上之前沸騰3分鐘;分子量係藉由與標準 蛋白質(Bio-Rad,Hercules ’ CA)的比較來測定。根據該等 標準操作程序來實行SDS-聚丙烯醯胺凝膠電泳法。以 PAGE分解之蛋白質在一硝化纖維素膜上電潰,並在室溫 下於 Odyssey 阻斷試劑(Odyssey blocking reagent) (Li-Cor Biosciences,Lincoln ’ NB)中培育2小時。然後,吾人在 該試劑中施加一原生抗體並在4°C下培育該混合物。原生 抗體使用包括:Oct3/4 (1:500,Santa Cruz)、SSEA-3 (1:500,SpRNAi-RGFP was inserted into pLNCJQ-var transcriptional virion. The medium of GP2-293 cells (10 ml per medium) (0.25 μιηη) was filtered and incubated at 3 ° ° (: and 5% C 〇 2 for 36 hours) at 37 ° <: and 5% C 〇 2 This was transferred directly to the cell cultures under test for 12 hours. Thereafter, fresh mirPS cell culture medium was added instead of the virus medium and replaced every three days. Since these media contain extremely high design reverse transcription The titer of the viral vector, almost all the cells tested (99.4%-99·8°/〇) were infected with the vector gene and began to express the introns within 24 hours. And RGFP. The positive gene-transferred mirPS cells were isolated and collected 24 hours after infection, and the cells were sorted by anti-RGFP monoclonal antibody (clontech, ca) using a FACS flow cytometer. Example 4 Northern blotting Spelling all RNAs (20 s) on 1 ° / ❶ formaldehyde - acacia and transferred to 87 201009074 nylon membrane (nylon membrane, Schleicher & Schuell, Keene, NH). Synthesis of LNA-DNA probe (sigma_Genosys , MO) can be complemented between these and OTP five-terminal exons or The designed 75-bp junction sequence of the pre_miRNA/shRNA meson, or a complementary gene transcriptional molecule, which was synthesized using the Prime-It II tool (Stratagene, La Jolla, CA). [32P]_dATP appears as a random primer extension ([32p]_dATP > 3000 Ci/mM, Amersham Internationa Arlington Heights, IL) with a 1〇bp-cutoff Micro Bio-Spin column (Bio -Rad, Hercules, CA) 纯化 Purification. Hybrids in 50% freshly deionized formamide (pH 7.0), 5 times Denhardt's solution, 0.5% SDS, 4 times SSPE and 250 mg/mL The denatured salmon sperm DNA fragment (18 hours, 42 ° C) was mixed in. The membrane was washed twice in 2 times SSC, 0.1% SDS (15 minutes, 250C) before autoradiography. And washed once in 0.2 times SSC, 0.1% SDS (45 minutes '37. 。. These results are shown in Figures 4B and 6B. _ Example 5 gDS-PAGE and Western point smashing method for the target protein Immunoblotting (Figures 8C and 9B), after removing the medium Ice-cold PBS was rinsed to about ~70% of the plate to separate the cells, and then a CelLytic-M dissolution/extraction reagent (lysis/extraction reagent, Sigma-Aldrich, MO) was dissolved, which was supplemented with a protease inhibitor, Leupeptin, TLCK, 88 201009074 TAME and PMSF. The cell lines were incubated on a vibrator (10) for 15 minutes at room temperature, then scraped into a microcentrifuge tube and centrifuged at 12,000 xg for 5 minutes to pellet the cell debris. . The cell lysate containing the protein was collected and stored at 7 〇〇C for use. Protein quantification was measured on an E-max micro-disc reader (Molecular Devices, Sunnyvale, CA) using the SOFTmax kit software. Under the conditions of reduction (+50 mM DTT) and non-reducing (no DTT), 30 ton of cell lysate was added to the SDS-PAGE sample buffer and loaded into the polypropylene raft. The amine gel was boiled for 3 minutes before; the molecular weight was determined by comparison with standard protein (Bio-Rad, Hercules 'CA). SDS-polyacrylamide gel electrophoresis was carried out according to these standard operating procedures. The protein decomposed by PAGE was electrolyzed on a nitrocellulose membrane and incubated for 2 hours at room temperature in an Odyssey blocking reagent (Li-Cor Biosciences, Lincoln 'NB). Then, we applied a native antibody to the reagent and incubated the mixture at 4 °C. Native antibody use includes: Oct3/4 (1:500, Santa Cruz), SSEA-3 (1:500,

Santa Cruz)、SSEA-4 (1:500,Santa Cruz)、Sox2 (1:500 ’Santa Cruz), SSEA-4 (1:500, Santa Cruz), Sox2 (1:500 ’

Santa Cruz)、Nanog (1:500,Santa Cruz)、Klf4 (1:200,Santa Cruz)、β-actin (1:2000,Chemicon,Temecula,CA)、及 RGFP (1:1000,Clontech)。經過一夜後,以 TBS-T 淋洗該 膜三次,然後在室溫下暴露在羊抗小鼠IgG(goat anti-mouse IgG)中達1小時,該羊抗小鼠IgG和Alexa Fluor 680反應 性染料(1:2,000 ; Invitrogen-Molecular Probes)結合形成二 89 201009074 級抗體。在三次額外的TBS-T淋洗後,使用Li-CorOdyssey 紅外線成像器(^Infrared Imager)及Odyssey軟體第10版來管 理該免疫點墨法之螢光掃描及影像分析。 實施例6 斑馬魚中之内含子RNA介導某因靜默Santa Cruz), Nanog (1:500, Santa Cruz), Klf4 (1:200, Santa Cruz), β-actin (1:2000, Chemicon, Temecula, CA), and RGFP (1:1000, Clontech). After one night, the membrane was rinsed three times with TBS-T and then exposed to goat anti-mouse IgG for 1 hour at room temperature. The goat anti-mouse IgG and Alexa Fluor 680 reactivity Dyes (1:2,000; Invitrogen-Molecular Probes) were combined to form a serogroup 89 201009074 antibody. After three additional TBS-T rinses, the Li-CorOdyssey Infrared Imager (^ Infrared Imager) and Odyssey Software Version 10 were used to manage the fluorescent scanning and image analysis of the immunospot ink method. Example 6 Intron RNA in zebrafish mediates a cause of silence

在轉染期間,Tg(flciz>7-GAL4:UAS-gfp)品種之斑馬魚幼 蟲係在含10 ml之0.2倍不含血清RPMI 1640培養液的一 魚缸中養育。藉由將60 μΐ之FuGene微脂體轉染試劑 (Roche Biochemicals,Indianapolis,IN)小心地溶解在 1 mi 之1倍不含血清的RPMI 1640培養液中製備一轉染預混 物。接著,如實施例1-2所示,將具一 anti_五GFPpre_miRNA 介子之該等办載體(20 μ§)與該預混溶液混 合,然後置於冰上30分鐘再直接施加在該魚缸内的該 Tg0CGAL4:UAS-gfp)魚幼蟲上。在12小時之間隔中給 予全部二種劑量(共60 pg)。在首次轉染6〇小時後收集樣 本。圖1B顯示該結果。 實施例7 甘數儀谢驗 在所需之實驗後,將細胞胰蛋白酶水解、形成粒狀, 並於_2〇 c下將其再懸浮於丨ml之pBS巾(含預冷的7㈣ 曱醇)中’m定料細胞1小時。腦等細卿成粒狀並以 1 ml之PBS清洗一次。將該等細胞肖次形成粒狀並於37〇c 201009074 下再懸浮於1 ml之PBS溶液(含1 mg/ml峨化丙咬 (propidium iodide)、0.5 mg/ml 核醣核酸苷(RNase))中達 30 分鐘。然後,在BD FACSCalibur流式細胞計數儀(San Jose,CA)上分析約15,〇〇〇個細胞。藉由繪製脈衝寬度對 脈衝面積的圖並圈選該等單-細胞來排除細胞雙元體。使 用套裝軟體Flowjo以「Watson Pragmatic」演算法來分析During transfection, the zebrafish larvae of the Tg (flciz > 7-GAL4: UAS-gfp) variety were reared in a fish tank containing 10 ml of 0.2-fold serum-free RPMI 1640 medium. A transfection premix was prepared by carefully dissolving 60 μM of FuGene liposome transfection reagent (Roche Biochemicals, Indianapolis, IN) in 1 μL of serum-free RPMI 1640 medium. Next, as shown in Example 1-2, the carrier (20 μ§) with an anti_five GFPpre_miRNA meson was mixed with the premixed solution, and then placed on ice for 30 minutes and then directly applied to the aquarium. The Tg0CGAL4: UAS-gfp) on the fish larvae. All two doses (60 pg total) were given at 12 hour intervals. Samples were collected 6 hours after the first transfection. Figure 1B shows the result. Example 7 After the desired experiment, the cell trypsin was hydrolyzed, formed into granules, and resuspended in 丨ml of pBS towel (containing pre-cooled 7 (tetra) sterol under _2 〇c ) 'm fixed cells for 1 hour. The brain is finely granulated and washed once with 1 ml of PBS. The cells were granulated and granulated and resuspended in 1 ml of PBS solution (containing 1 mg/ml propidium iodide, 0.5 mg/ml RNase) at 37〇c 201009074. In the middle of 30 minutes. Then, about 15, cells were analyzed on a BD FACSCalibur flow cytometer (San Jose, CA). The cell dimers were excluded by plotting the pulse width versus pulse area and circled the mono-cells. Use the package software Flowjo to analyze with the "Watson Pragmatic" algorithm

所收集之資料。如圖5A所示,該流式細胞計數儀圖表之 第(左)及第一(右)波峰表示在整個受測試之細胞群體中 休眠G0/G1及有絲分裂Μ期之細胞群體的含量。 實施例8 ΡΝΑ去甲基化海丨路 來自約兩百萬株細胞之基因體DNA係以一 DNA分離 工具(DNA isolation kit,Roche)來分離,並分成兩個小劑 量。該DNA小劑量之一(2 pg)# 一 CCGG切割限制酶母 來解消,然後以1%之洋菜膠電泳法來評估,以判定泛基因 體的去甲基化(圖7Α)。在二亞硫酸鹽修飾之前及之後,另 一小劑量(2 μΕ)係用於PCR選殖該啟動子之整個 9,400鹼基對(bp)五端調節區域(NT一〇〇7592核苷酸 21992184-22001688)。二亞硫酸鹽修飾係以一 CpGen〇me DNA修飾工具(Chemicon,CA)來實行。對DNA作二亞硫 酸鹽處理以將所有未曱基化之胞錢轉換成尿較,而已 曱基化之胞嘧啶則仍維持為胞嘧啶。例如:將未甲基化之 ACGT位(而非已曱基化之ACGT)改變成augt位。 91 201009074 亞硫酸鹽修飾之前及之後已設計並測試了專對標的 五端啟動子區域的PCR引子,包括:兩前向引子 5’-GAGGAGTTGA GGGTACTGTG-3’(SEQ.ID.NO.44)(經Information collected. As shown in Figure 5A, the first (left) and first (right) peaks of the flow cytometer chart represent the amount of cell populations that are dormant in the G0/G1 and mitotic stages of the entire population of cells tested. Example 8 Demethylated Haitang Road The genomic DNA line from about two million cells was isolated by a DNA isolation kit (Roche) and divided into two small doses. One of the small doses of DNA (2 pg) # a CCGG cleavage restriction enzyme was used to resolve and then evaluated by 1% acacia gel electrophoresis to determine the demethylation of the pan-gen (Figure 7Α). Before and after the disulfite modification, another small dose (2 μΕ) was used to PCR-select the entire 9,400 base pair (bp) five-terminal regulatory region of the promoter (NT-1592 nucleotide 21992184) -22001688). The disulfite modification was carried out using a CpGen〇me DNA modification tool (Chemicon, CA). The DNA was treated with dithionite to convert all ungerminated cytoplasm into urinary, while the thiolated cytosine remained as cytosine. For example, change the unmethylated ACGT bit (instead of the conjugated ACGT) to the augt bit. 91 201009074 PCR primers for the targeted five-terminal promoter region were designed and tested before and after sulfite modification, including: two forward primers 5'-GAGGAGTTGA GGGTACTGTG-3' (SEQ.ID.NO.44) through

二亞硫酸鹽修飾後之DNA)與5’-GAGGAGCT(3A GGGCACTGTG-3’(SEQ.ID.NO.45)(未修飾之 dna)以及 . 一反向引子 5’-GTAGAAGTGC CTCTGCCTTC C_;3, (SEQ.ID.NO.46)。在PCR選痩方面,不論是已作二亞硫酸 鹽處理或未作處理之該等基因體DNA(50ng),首先在1倍 PCR緩衝液中與該等引子(共150 pmole)混合,再加熱至 © 94°C持續4分鐘,然後立即於冰上冷卻。其後,進行% 個如下之PCR循環:在92°C下進行1分鐘,在55cC下進 行1分鐘,然後在70°C下進行5分鐘,其係使用一長模板 PCR延伸工具(Roche)。以 一 PCR 純化工具(PCR purification kit,Qiagen)收集所得之產物,且以多種ACGT切割限制酶 的均量混合物(每一種5U)來解消2 pg之DNA,該等限制 酶包含:U (AACGTT)、(CACGTC)、Pm// ❹ (CACGTG) ' SnaBI (TACGTA)^ HpyCH4IV (ACGT) 〇 m 後,使用3%洋菜膠電泳法來評估該等已解消之片段(圖 7B) 〇 在二亞硫酸鹽DNA定序分析(圖7C)方面,吾人進一 步使用定量PCR(qPCR)擴增一 467-bp標的區域,其係在 OciW 轉錄起始位(NT—007592 核苷酸 21996577-21997043) 之侧翼。所用之引子係一前向引子5’-GAGGCTGGAG TAGAAGGATT GCTTTGG-3,(SEQ.ID.NO.47)及一反向引 92 201009074 子 5,-CCCTCCTGAC CCATCACCTC CACCACC-3, (SEQ.ID.NO.48)。將以上選殖之9,400-bp OciW五端啟動 子區域(50 ng)與該等qpCR引子(總共100 pni〇le)混合在1 倍PCR緩衝液中,加熱至94。(1:持續2分鐘,然後立即於 冰上冷卻。其後,進行2〇個如下之PCR循環:在94。(:下 進行30秒,在68。(:下進行1分鐘,其係使用一高準確度 PCR 延伸工具(high-fidelity PCR extension kit ’ Roche)。具 一正確467-bp長度之擴增後DNA產物進一步地以3%洋菜 膠電泳法來分餾,再以一膠體萃取工具(Qiagen)純化,然後 用於DNA定序。該等DNA曱基化位之一詳細圖譜係藉由 比較在該已作二亞硫酸鹽修飾之DNA序列中之未改變的 胞哺咬、與在該未作二亞硫酸鹽修飾之DNA序列中之未 改變的胞,咬來產生。 實施例9 徵型核醣接醻(miRNA)撤陳列分析 在滿盤下,使用mz>VanaTM miRNA分離工具 (miRNA isolation kit ’ Ambion)自每一細胞培養物中分離小 RNAs °使用1%曱醛_洋菜膠電泳及光譜儀測量(Bi〇 Rad) 來評估該等分離之小RNAs的純度及數量,然後立刻以乾 冰冷>東並送往 LC Sciences(San Diego ’ CA)進行 miRNA 微 陣列分析。每一微陣列晶片分別與標示為Cy3或Cy5之一 單一樣本雜合,或是與標示為Cy3與Cy5之一對樣本雜 ° 進行背景相減及正規化(normalization)。在一雙重樣本 93 201009074 測驗方面,執行一p值計算並產生超過3倍之分化表現轉 錄分子的一列表。在圖6A之Cy3及Cy5強度影像(藍背景) 中,當訊號強度自第1級增加至第65,535級時,對應之色 彩由藍色轉變成綠色、黃色,再到紅色。訊息強度在23,〇〇〇 級之上被視為基因表現中的正向呼叫。在Cy5/Cy3比之影 像(黑背景)中’當Cy3高於Cy5級時,色彩為綠色;當Cy3 級等於Cy5級時’色彩為黃色;及當Cy5級高於Cy3級時, 色彩為紅色。 實施例10 整_號細胞篡因裊現型式之泛基因艚微陣列分折 包含超過54,000個募核苷酸探針之人類基因體 GeneChip U133A&B 與 plus 2.0 陣列(Affymetrix,Santa Clara,CA)係用來偵測在mirPS細胞中之泛基因體47,000 個人類基因轉錄體的表現型式,如圖8A及9A所示。每一 樣本係在第三份複本中測試,並重覆相同實驗四次。來自 每一受測樣本之全部RNA係使用RNeasy離心管柱(spin columns,Qiagen)來分離。為製備用於微陣列雜合之標定 的探針,使用Superscript選擇系統(Invitrogen)將該等萃取 之全部RNA(2 pg)轉換成雙股cDNA,其具有一合成之 〇ligo(dT)24-T7 啟動引子 5,-GGCCAGTGAA TTGTAATACG ACTCACTATA GGGAGGCGG-(dT)24-3' (SEQ.ID.NO.49)。 將所得之cDNAs以苯酚/氯仿萃取來純化’以乙醇沈澱析 出,並在0.5 pg/μΐ之濃度下再懸浮於以焦碳酸二乙醋 94 201009074 (diethylpyrocarbonate ’ DEPC)處理之二次水(ddH2〇)中。然 後,進行體外轉錄,其包含:1 pg之dsDNAs、7.5 mM未 標定ATP與GTP、5 mM未標定UTP與CTP、及2 mM生 亀Dithionite-modified DNA) and 5'-GAGGAGCT (3A GGGCACTGTG-3' (SEQ.ID.NO.45) (unmodified dna) and a reverse primer 5'-GTAGAAGTGC CTCTGCCTTC C_;3, (SEQ.ID.NO.46). In terms of PCR selection, whether or not these genomic DNAs (50 ng) have been treated with or without disulfite, first in 1x PCR buffer and The primers (150 pmole) were mixed and heated to 94 ° C for 4 minutes, then immediately cooled on ice. Thereafter, % of the following PCR cycles were performed: 1 minute at 92 ° C and 55 ° C 1 minute, then 5 minutes at 70 ° C using a long template PCR extension tool (Roche). The resulting product was collected by a PCR purification kit (Qiagen) and cleaved with various ACGT restriction enzymes. A homogeneous mixture (5 U each) to dissipate 2 pg of DNA, including: U (AACGTT), (CACGTC), Pm// ❹ (CACGTG) ' SnaBI (TACGTA)^ HpyCH4IV (ACGT) 〇m Thereafter, 3% acacia gel electrophoresis was used to evaluate the eliminated fragments (Fig. 7B). In the case of disulfite DNA sequencing analysis (Fig. 7C), Further, a 467-bp target region was amplified by quantitative PCR (qPCR), which was flanked by the OciW transcription initiation site (NT-007592 nucleotide 21996577-21997043). The primer used was a forward primer 5'-GAGGCTGGAG. TAGAAGGATT GCTTTGG-3, (SEQ.ID.NO.47) and a reverse primer 92 201009074 Sub 5, -CCCTCCTGAC CCATCACCTC CACCACC-3, (SEQ.ID.NO.48). The above-mentioned 9400-bp OciW The five-terminal promoter region (50 ng) was mixed with the qpCR primers (100 pni〇le total) in 1x PCR buffer and heated to 94. (1: 2 minutes, then immediately cooled on ice. Perform 2 PCR cycles as follows: at 94. (: 30 seconds, at 68. (: 1 minute, using a high-fidelity PCR extension kit 'Roche) The amplified DNA product with a correct 467-bp length was further fractionated by 3% gel electrophoresis and purified by a colloidal extraction tool (Qiagen) and then used for DNA sequencing. A detailed map of one of these DNA thiolation sites is obtained by comparing unaltered cell bites in the disulfite-modified DNA sequence and in the DNA sequence not modified by disulfite. The unchanging cells are bitten to produce. Example 9 Elicitation of ribonucleoside (miRNA) withdrawal display analysis Under the full plate, small RNAs were isolated from each cell culture using the mz>VanaTM miRNA isolation tool (Amion). °1% furfural was used_ Acacia gel electrophoresis and spectrometer measurements (Bi〇Rad) were used to evaluate the purity and quantity of these isolated small RNAs, which were immediately sent to LC Sciences (San Diego 'CA) for miRNA microarray analysis. Each microarray wafer is hybridized with a single sample labeled Cy3 or Cy5, or background subtracted and normalized with one of the samples labeled Cy3 and Cy5. In a double sample 93 201009074 test, a p-value calculation was performed and a list of more than 3 times the differentiation performance transcripts was generated. In the Cy3 and Cy5 intensity images (blue background) of Fig. 6A, when the signal intensity is increased from the first level to the 65th, 535th level, the corresponding color changes from blue to green, yellow, and then to red. The message strength is above 23, and is considered a positive call in gene expression. In Cy5/Cy3 than in the image (black background), the color is green when Cy3 is higher than Cy5; the color is yellow when Cy3 is equal to Cy5; and the color is red when Cy5 is higher than Cy3. . Example 10 Whole Gene 艚 Microarray Divided into a Human Genome of Over 54,000 Nucleotide Probes GeneChip U133A & B and Plus 2.0 Array (Affymetrix, Santa Clara, CA) It is used to detect the phenotype of 47,000 human gene transcripts of ubiquitin in mirPS cells, as shown in Figures 8A and 9A. Each sample was tested in the third copy and repeated the same experiment four times. All RNA from each sample tested was isolated using RNeasy spin columns (Qiagen). To prepare probes for microarray hybridization, the entire extracted RNA (2 pg) was converted to a double-stranded cDNA using a Superscript selection system (Invitrogen) with a synthetic 〇ligo(dT)24- T7 promoter primer 5, -GGCCAGTGAA TTGTAATACG ACTCACTATA GGGAGGCGG-(dT)24-3' (SEQ.ID.NO.49). The obtained cDNAs were purified by extraction with phenol/chloroform, precipitated with ethanol, and resuspended at a concentration of 0.5 pg/μΐ in secondary water treated with diethyl pyrocarbonate 94 201009074 (diethylpyrocarbonate 'DEPC) (ddH2〇 )in. In vitro transcription was then performed, including: 1 pg of dsDNAs, 7.5 mM uncalibrated ATP and GTP, 5 mM uncalibrated UTP and CTP, and 2 mM sputum

物素標定 CTP 與 UTP(biotin-ll-CTP、biotin-16-UTP,Enzo ' Diagnostics),以及20 U之T7 RNA聚合酶。反應在370C 下進行4小時,然後將所得之cRNAs以RNeasy離心管柱 (Qiagen)純化。在一 1%之洋菜膠上分離一部分之CRNA樣 本以檢查長度範圍,然後藉由在94。(:下於pH 8.0的40 mM ❹ 三醋酸鹽(Tris-acetate)、100 mM KOAc/30 mM MgOAc 中 加熱35分鐘,將10 pg之cRNAs隨機分餾成50個鹼基的 一平均長度。在200 μΐ之AFFY緩衝液(Affymetrix)中於 40°C下持續地混合16小時以完成雜合。在雜合之後,以 200 μΐ之6倍SSPE-T緩衝液(1倍之0.25 Μ氣化鈉/15 mM 碟酸鈉’ pH 7.6Λ mMEDTA/0.005。/。氣核)淋洗陣列三次, 然後以200 μ1之6倍SSPE-T在50°C下清洗1小時。該等 ©陣列另外再以0.5倍之SSPE-T淋洗兩次,並以0.5倍之 SSPE-T在50。(:下清洗15分鐘。然後,以2 pg/ml之卵白 素-藥 紅蛋白(streptavidin-phycoerythrin , Invitrogen-MolecularProbes)及 1 mg/ml 之醯化 BSA(Sigma) 在6倍之SSPE-T(pH 7.6)中完成染色測驗。該等陣列係以 一共焦掃描器(confocal scanner ’ Molecular Dynamics)在 7.5 μπι下讀取。 為識別該背景之變化,吾人使用相同之樣本來複製該 等微陣列測試,並選擇兩百株基因(圊8Α之白點)以作進一 95 201009074 步之比較,其略為在該等測試之一侧呈現。使用完美相配 探針及失配探針之間的總平均差將該等樣本訊號正規化。 之後,使用 Affymetrix Microarray Suite 5.0 版、Expression Console™ 1.1.1 版(Affymetrix)及 Genesprings(Silicon · Genetics)軟體來分析整個泛基因體基因表現型式之變化 · (圖8A之綠點)。超過一倍(〇ne-fold)之基因表現率的變化被 視為陽性分化基因(positive differential genes)。在基因叢集 測驗中’使用一外掛程式Genetrix(Epicenter Software)與 Affymetrix軟體配合。以在每一微陣列中之内部管家基因 ❿ 控制平均正規化該樣本之訊號。在正規化之後,當訊號強 度由第1級增加至第65,535級時,該對應之色彩由綠色轉 變成黑色,再到紅色。在第23,000級(紅色)之上的訊息強 度視為一正向呼叫,其中一北方墨點分析可偵測為陽性。 實施例ii 免疫偵測谢蹌 在不進行任何處理下,除了不含哺乳細胞之mirPs培 © 養基的處理以外,將該等mirPS衍生類胚胎體異種移植至 "週大雌性假性懷孕免疫功能不足之SCID_bdge小鼠的 子呂或腹腔中可形成類畸胎瘤之囊腫⑽1())。該免疫功能 不足之裸鼠係用來提供模擬移植治療的一體内環境。製造 該饭it It孕小鼠的方法為:在腹膜内注射工见之人類停經 後促生腺激素(human men〇pausal §贿如加,丽g)兩 、’;後再/主射人類絨毛膜性腺激素ch〇ri〇nic 96 201009074 gonadotrophin,hCG)—天。在體外分子引導幹細胞分化成 生殖細胞系譜系方面,mirPS細胞在370C及5% C02下保 持在DMEM/F12(1:1;高葡萄糖)培養液中之聚鳥胺酸/基膜 素覆蓋皿(polyornithine/laminin-coated)上 12 小時,該培養 液的補充成分為10%炭吸附FBS、4 mM L-齡醯胺、1 mM 丙嗣酸納、5 ng/ml活化素及50 ng/ml之二氫睪固酮 (dihydrotestosterone,DHT)。之後,騰蛋白酶水解該等細 胞’以1倍PBS清洗,並收集在四個小劑量之冷凍 Matrige(每一個劑量100 μΐ)及一個小劑量之1〇〇 μΐ的1倍 PBS中。之後’吾人隨即將該等細胞轉殖到六週大之免疫 功能不足SCID-beige裸鼠的後肢肌肉、腹膜、子宮、皮下 頸部皮膚(含Matrigel)及尾靜脈(含PBS)中。在實驗處理期 間以二乙醚(diethyl ether)麻醉該小鼠。一週後’僅在子宮 區域發現類精原細胞。在纖維母細胞分化方面,吾人在異 體移植之前按照以上所示之相同程序,但使用標準不含盼 紅之DMEM培養液進行6小時,該培養液的補充成分為 100/〇FBS、4mML-麩醯胺、1 mM 丙酮酸鈉、5ng/mlNoggin 蛋白及100 ng/ml轉形生長因子ji(TGF-pl)。一週後在子 宮中發現纖維母細胞。在軟骨細胞分化方面,吾人如先前 般實行相同程序,但使用標準RPMI 1640培養液進行6小 時,該培養液的構充成分為l〇%FBS、4mML-麵醯胺、1 mM丙酮酸鈉及1〇〇 ng/ml骨成形蛋白4(bone morphogenetic protein 4,BMP4)。僅在肝臟區域發現軟骨 細胞。 97 201009074 在特定組織標記之免疫偵測方面,該等組織樣本係在 4°C下於4%三聚曱搭(paraformaldehyde)中固定一整夜。在 將該等樣品嵌入石蟻中之前,先將該等樣品相繼地以1倍 PBS、甲醇、異丙醇及四氫萘(tetrahydronaphthalene)清洗。 然後在一微切片機(microtome)上以7-10 μιη之厚度切割該 等嵌入之樣本並固定在乾淨的TESPA塗布玻片上。然後, 以二曱苯(xylene)去除該等玻片之蠟並使用封片膠 (mounting media ; Richard Allan Scientific » Kalamazoo » MI)固定在蓋玻片下,再以蘇木精(hematoxylin)及曙紅 ® (eosin) (H&E,Sigma)染色以供形態觀察之用。免疫組織化 學(IHC)染色工具係購自Imgenex(San Diego,CA)。根據製 造商的建議實行抗體稀釋及免疫染色法之程序。所用之原 生抗體包括:Tujl (1:500,Abeam Inc·,Cambridge,MA)、 ABCA2 (1:100,Santa Cruz Biotechnology,Santa Cruz, CA)、Dazla (1:100,Abeam)、EE2 (1:100,Santa Cruz)、 atlastinl (1:200 ’ Santa Cruz)、COL1A1 (1:500,Santa Cruz)、 COL2A1 (1:500,Santa Cruz)、tropoelastin (1:200,Abeam), 及RGFP (1:500,Clontech)。以螢光染色標定之羊抗兔(goat anti-rabbit)或馬抗小鼠(horse anti-mouse)的抗體係用來作 為二級抗體(1:2,000,Invitrogen-Molecular Probes)。在具 全場掃描之一 100倍顯微鏡下觀察到陽性結果,並以一 Metamorph影像處理程式(Nikon 80i及TE2000顯微鏡定量 分析系統)在200倍或400倍之放大倍率下測量以作定量分 析。 98 201009074 實施例12 鈿胞遒移測驗 在一 96孔培養盤中,吾人在每一孔中將一 PC3及一 mirPS-PC3細胞放置在一起,然後記錄其移動及交互作 用。該等細胞皆在37°C及5% C02下於RPMI 1640培養液 中生長,該培養液的補充成分為10%炭吸附FBS、4 mM L-楚醯胺、1 mM丙酮酸鈉、5 ng/ml活化素、5 ng/ml Noggin 蛋白、3 ng/ml bFGF 及 0·5 μΜ GSK-3 抑制劑 XV。在一 TE2000 倒立式顯微鏡系統(invert microscopic system, Nikon)下使用一成對之MO-188NE 3D液壓式精密微操縱 器(hydraulic fine micromanipulators)來個別地分離並收集 該等細胞,該微操縱器具有一細胞固持器(cell holder)。整 個微操縱器及顯微鏡系統皆放置在一防震桌上。每15秒記 錄該等相片(放大倍率400x及600x),持續6小時。藉由追 蹤在該等相片中之細胞移動及該細胞之形態判定該細胞遷 移。如圖7D所示,轉移性癌症PC3細胞呈現如ATCC所 述之一快速梭形移動,其中該mirPS-PC3細胞保持在該放 置位置中’其顯現一圓形休眠之表現型。 實施例13 统計分折 該等結果以平均值±標準差(mean±SE)表示。資料之統 計分析係以單因子變異數分析(one-way ANOVA)來計算。 99 201009074 當主要效應明顯時,使用Dunnett事後測試法(Dunnettis post-hoc test)來識別與控制組有明顯差異之群。在兩組處理 群之間進行比對時,使用雙尾student丨測試(tw〇_tailed student纟test)。對於包含超過兩組處理群之實驗,則依照一 事後多範圍測試(post-hoc multiple range test)實行變異數分 析(AN0VA)。機率值p<〇.〇5被認定為具有統計上的意 義。所有夕值係由雙尾測試(tw〇_taile(j test)來決定。The peptides were labeled with CTP and UTP (biotin-ll-CTP, biotin-16-UTP, Enzo 'Diagnostics), and 20 U of T7 RNA polymerase. The reaction was carried out at 370 C for 4 hours, and the resulting cRNAs were then purified on an RNeasy centrifuge column (Qiagen). A portion of the CRNA sample was separated on a 1% agar extract to examine the length range and then at 94. (: 40 mM Tris-acetate, 100 mM KOAc/30 mM MgOAc was heated for 35 minutes at pH 8.0, and 10 pg of cRNAs were randomly fractionated into an average length of 50 bases. The mixture was continuously mixed for 16 hours at 40 ° C in AFFY buffer (Affymetrix) to complete the hybrid. After the hybridization, 6 times SSPE-T buffer (1 times 0.25 Μ sodium sulphate / 2 times) 15 mM sodium silicate 'pH 7.6 Λ mM EDTA / 0.005. / nucleus.) The array was rinsed three times and then washed with 200 μl of 6 times SSPE-T for 1 hour at 50 ° C. The arrays were additionally 0.5. Double the SSPE-T rinse twice and use 0.5 times SSPE-T at 50. (: Wash for 15 minutes. Then, with 2 pg/ml of aggretin-phycoerythrin (Invitrogen-Molecular Probes) And 1 mg/ml of deuterated BSA (Sigma) The staining test was performed in 6 times SSPE-T (pH 7.6). The arrays were read at 7.5 μπ with a confocal scanner 'Molecular Dynamics'. In order to identify the change in the background, we use the same sample to replicate the microarray tests and select two hundred genes (圊8) White point) is compared to the step of step 2010 20107474, which is slightly presented on one side of the test. The sample signals are normalized using the total average difference between the perfect matching probe and the mismatched probe. Use Affymetrix Microarray Suite version 5.0, Expression ConsoleTM version 1.1.1 (Affymetrix) and Genesprings (Silicon · Genetics) software to analyze changes in the overall ubiquitin gene expression pattern (green dot in Figure 8A). More than doubled (〇 The change in gene expression rate of ne-fold) is considered as positive differential genes. In the gene cluster test, a plug-in Genetrix (Epicenter Software) is used in conjunction with Affymetrix software to be used in each microarray. The internal housekeeping gene ❿ controls the average normalization of the sample signal. After normalization, when the signal intensity increases from level 1 to level 65, 535, the corresponding color changes from green to black to red. At level 23,000 The strength of the message above (red) is considered a forward call, and a northern ink dot analysis can be detected as positive. Example ii Immunodetection Xie Wei was subjected to xenografting of these mirPS-derived embryoid bodies to "Zhouda female pseudopregnancy immunity except for the treatment of mirPs culture-free cells containing no mammalian cells without any treatment A teratoma-like cyst (10) 1()) can be formed in the spleen or abdominal cavity of a SCID_bdge mouse with insufficient function. This immunocompromised nude mouse is used to provide an integrated internal environment for mimicking transplant therapy. The method of making the rice it It pregnant mouse is: after the intraperitoneal injection of humans, the human growth hormone (human men〇pausal § bribe, plus g) two, '; after / main shot human fluff Membrane gland hormone ch〇ri〇nic 96 201009074 gonadotrophin, hCG) - day. In vitro molecularly guided stem cells differentiated into germline lineages, mirPS cells were maintained in DMEM/F12 (1:1; high glucose) medium in poly-guanine/base membrane cover at 370C and 5% CO 2 ( Polyporithine/laminin-coated for 12 hours, the supplement of the culture solution is 10% carbon adsorption FBS, 4 mM L-age guanamine, 1 mM sodium citrate, 5 ng/ml activin and 50 ng/ml Dihydrotestosterone (DHT). Thereafter, the proteolytically hydrolyzed the cells was washed with 1 PBS and collected in four small doses of frozen Matrige (100 μM each) and a small dose of 1 μM in 1 PBS. After that, we immediately transferred the cells to the six-week-old SCID-beige nude mouse hind limb muscle, peritoneum, uterus, subcutaneous skin (including Matrigel) and tail vein (including PBS). The mice were anesthetized with diethyl ether during the experimental treatment. One week later, spermatogonial cells were found only in the uterine region. In terms of fibroblast differentiation, we performed the same procedure as shown above before allogeneic transplantation, but using a standard DMEM medium containing no pan red for 6 hours, the supplement of the culture solution was 100/〇FBS, 4mML-bran Indoleamine, 1 mM sodium pyruvate, 5 ng/ml Noggin protein and 100 ng/ml transforming growth factor ji (TGF-pl). Fibroblasts were found in the uterus a week later. In terms of chondrocyte differentiation, we performed the same procedure as before, but using standard RPMI 1640 medium for 6 hours. The composition of the medium was 10% FBS, 4 mM L-guanamine, 1 mM sodium pyruvate and 1 ng/ml bone morphogenetic protein 4 (BMP4). Chondrocytes are found only in the liver area. 97 201009074 In the case of immunodetection of specific tissue markers, these tissue samples were fixed overnight in 4% paraformaldehyde at 4 °C. These samples were washed successively with 1x PBS, methanol, isopropanol and tetrahydronaphthalene before being embedded in the stone ants. The embedded samples were then cut at a thickness of 7-10 μηη on a microtome and mounted on a clean TESPA coated slide. The waxes of the slides were then removed with xylene and fixed under coverslips using mounting gel (Rising media; Richard Allan Scientific » Kalamazoo » MI), followed by hematoxylin and sputum Red® (eosin) (H&E, Sigma) stained for morphological observation. Immunohistochemistry (IHC) staining tools were purchased from Imgenex (San Diego, CA). Procedures for antibody dilution and immunostaining are performed according to the manufacturer's recommendations. Native antibodies used include: Tujl (1:500, Abeam Inc., Cambridge, MA), ABCA2 (1:100, Santa Cruz Biotechnology, Santa Cruz, CA), Dazla (1:100, Abeam), EE2 (1: 100, Santa Cruz), atlastinl (1:200 ' Santa Cruz), COL1A1 (1:500, Santa Cruz), COL2A1 (1:500, Santa Cruz), tropoelastin (1:200, Abeam), and RGFP (1: 500, Clontech). A goat anti-rabbit or horse anti-mouse anti-system calibrated by fluorescence staining was used as a secondary antibody (1:2,000, Invitrogen-Molecular Probes). Positive results were observed under a 100x microscope with full field scan and measured at a magnification of 200x or 400x using a Metamorph image processing program (Nikon 80i and TE2000 microscopic quantitative analysis system) for quantitative analysis. 98 201009074 Example 12 Cell Migration Test In a 96-well plate, we placed a PC3 and a mirPS-PC3 cell in each well and recorded their movement and interaction. The cells were grown in RPMI 1640 medium at 37 ° C and 5% CO 2 . The supplement of the medium was 10% carbon adsorption FBS, 4 mM L-clinamide, 1 mM sodium pyruvate, 5 ng. /ml activin, 5 ng/ml Noggin protein, 3 ng/ml bFGF and 0.5 μM GSK-3 inhibitor XV. The cells were individually separated and collected using a pair of MO-188NE 3D hydraulic fine micromanipulators under a TE2000 inverted microscopic system (Nikon). The micromanipulator has a Cell holder. The entire micromanipulator and microscope system are placed on a shockproof table. Record these photos every 15 seconds (magnification 400x and 600x) for 6 hours. The cell migration is determined by tracking the movement of the cells in the photographs and the morphology of the cells. As shown in Figure 7D, metastatic cancer PC3 cells exhibit a rapid fusiform movement as described by ATCC, wherein the mirPS-PC3 cells remain in the placement position' which exhibits a circular dormant phenotype. Example 13 Statistical Fractions These results are expressed as mean ± standard deviation (mean ± SE). The statistical analysis of the data was calculated by one-way ANOVA. 99 201009074 When the main effects are obvious, the Dunnettis post-hoc test is used to identify groups that are significantly different from the control group. When comparing between the two treatment groups, a two-tailed student test (tw〇_tailed student纟test) was used. For experiments involving more than two treatment groups, the variance analysis (AN0VA) was performed according to a post-hoc multiple range test. The probability value p<〇.〇5 is considered to have statistical significance. All values are determined by a two-tailed test (tw〇_taile(j test).

【圖式簡單說明】 明確吕之,以下說明的圖示僅供舉例說明之用而非限制本 發明: 圖1A-B描述内含子miRNA生體合成及其相對之基因靜默 效應的機制。(圖1A)將内含子miRNA轉錄成先驅訊息 RNA(p_RKA)之-部分’其包含蛋白質編碼的外顯子及非編 碼内含子。將該等内含子從中剪接出來,並將一些 其二級結構進一步酶切而可誘發標的基因靜默的小型類 miRNA 77子内,而該等外顯子係結合在-起以形成成熟之 mRNA以供標記蛋自f合成。(目1B)將聽設計的内含子 miRNA基因轉轉染到_秦嫩品種斑馬魚的 實施例顯示··在標的綠色EGFp表現上之強力的基因靜默效應 (>80%之抑制,左邊第四列),然而其它非標的介子則不受影 100 201009074 響,包括(從第一列至第五列):不含miRNA之一空内含子(1), 具對抗祖厂-p24(2)或結合蛋白/«吨/?/⑶任一者之 pre-miRNA介子的内含子,以及具anti-^GFP pre-miRNA介子 但無功能性五端剪接位(functional 5’-splice site)的内含子(5)。將 該anti-五GFP pre-miRNA插入紅色色偏螢光標記(red_shifted fluorescent marker,及GFP)基因的五端近端内含子區域 (5’-proximal intron region) 〇北方點墨分析法(右圖)顯示成熟之 ❹ miRNA家族僅由該pre-miRNA-插入之該等剪接產物生 成’而非該空及GF尸(-)或該有缺陷之,這表示在内含 子miRNA生體合成中需要RNA剪接。 圖2A及2B描述使用包含φ厕eGFi5轉殖基因之修飾 Tei-O«载體(即:户2^〇„々灯_⑽^必)的結構及策略,以表現 mir-302spre-miRNA基因群或shRNA。一種電穿孔型基因轉殖 傳送方法係用來將該表現mir-302之轉瘦基因轉 ® ^入標的體細胞/癌症細胞。 圖3A-3C顯示將人類正常頭髮毛囊hHFC細胞及癌症黑色素 癌Col〇細胞轉化為類ES多能性幹(mirPS)細胞,其使用預先設 計之Γβ-〇« mir-302-表現轉殖基因之電穿孔型轉染。(圖3A)在 以-〇«可誘發載體(即必)中之重組恤_3〇2_ 表現轉疫基西(即·· SpRNAi-RGFP)的結填。該SpRMAi-RGFP轉 殖基因係以370鹼基對(bp)同源區域為侧翼,其用來重組插入 101 201009074 人類細胞基因體的標的位。(圖3B)該mir-302 pre-miRNA基因 群(mir-302s)之建構,其合併為該办轉殖基因之内 含子的一部分。(圖3C)使用FACS流動式細胞計數儀(flow cytometry)選出陽性mir-302-轉導之mirPS細胞,該流式細胞計 數儀係針對RGFP標記蛋白之抗體來分類細胞。目前本發明之 轉殖基因傳送的成功率經測量約為91%-93%。 圖4A-4B顯示在該mirps細胞基因體之7^-〇„恤_3〇2-表現 轉殖基因的併入整合,其造成在各種去氧羥(Dox) 馨 濃度的控制下之該等mir_3〇2家族成員(mir-302s)的可誘發表 現。(圖4A)由不同mirps細胞株分離之基因體DNA的定量 PCR(qPCR ;左圖)分析,其顯示所有的mjjps細胞僅攜帶該轉 殖基因之一或兩個伴隨拷貝序列,其中在原先之hHFC及Colo 細胞中未4貞測到轉殖;基因(控制組)。螢光原位雜合^piu〇rescent 加-漁/ hybridization,FISH ;右圖)實驗進一步地顯示該轉殖基 因被插進該等人類基因體之特定位置中。此種限制基因轉殖插 ◎ 入暗示整體mir-302表現之濃度可影響mirps細胞之存活(圖 4B)對應於該Dox濃度之該可誘發mir_3〇2s表現的北方點墨分 析及柱形圖展示。 圖5A-5C顯示將人類正常頭髮毛囊(hHFC)及癌症黑色素癌 Colo細胞轉化為類ES多能性幹(mirps)細胞的變化。(圖5A) 在該等mir-302-轉導細胞(即··mirps-hHFC及mirPS-Colo細胞) 102 201009074BRIEF DESCRIPTION OF THE DRAWINGS The following illustrations are for illustrative purposes only and are not limiting of the invention: Figures 1A-B depict the mechanism of in vivo synthesis of intron miRNAs and their relative gene silencing effects. (Fig. 1A) Transcription of an intron miRNA into a portion of the precursor message RNA (p_RKA) which contains a protein-encoded exon and a non-coding intron. The introns are spliced out and some of the secondary structures are further digested to induce a silent gene in the small miRNA 77, and the exons are ligated to form mature mRNA. For the labeling of eggs from f synthesis. (Item 1B) Example of transfecting the intron miRNA gene of the design into the zebrafish zebrafish shows a strong gene silencing effect on the target green EGFp expression (> 80% inhibition, left The fourth column), however, other non-standard mesons are not affected by the shadow 100 201009074, including (from the first column to the fifth column): one of the miRNAs without the miRNA (1), against the ancestor-p24 (2 Or an intron of a pre-miRNA meson that binds to either protein/« ton/?/(3), and an anti-^GFP pre-miRNA meson but a functional 5'-splice site Intron (5). The anti-five GFP pre-miRNA was inserted into the 5'-proximal intron region of the red-shifted fluorescent marker (GFP) gene. Figure) shows the mature ❹ miRNA family generated only by the splicing products of the pre-miRNA-insertion 'instead of the null and GF corpse (-) or the defective, which means intron synthesis in intron miRNAs RNA splicing is required. 2A and 2B depict the structure and strategy of a modified Tei-O« vector containing φ toilet eGFi5 transgenic gene (ie, 户2^〇„々灯_(10)^必) to express the mir-302spre-miRNA gene group Or shRNA. An electroporation-type gene transfer delivery method is used to transfer the mir-302-transferred gene into a somatic/cancer cell. Figure 3A-3C shows human normal hair follicle hHFC cells and cancer. Melanoma Col cells are transformed into ES-like pluripotent stem (mirPS) cells, which are transfected with a pre-designed Γβ-〇« mir-302-expressing transgenic gene (Fig. 3A). «Recombinant shirts in the inducible vector (ie, must) _3〇2_ The expression of the transgenic keise (ie SpRNAi-RGFP). The SpRMAi-RGFP transgenic line is 370 base pairs (bp) The source region is flanking and is used to recombine the target position of the human cell genome of 101 201009074. (Fig. 3B) The construction of the mir-302 pre-miRNA gene group (mir-302s), which is merged into the transgenic gene of the plant. Part of the intron. (Fig. 3C) Selection of positive mir-302-transduced mirPS cells using a FACS flow cytometry The flow cytometer classifies cells for antibodies against RGFP-tagged proteins. The success rate of transgenic gene delivery of the present invention is currently measured to be about 91% to 93%. Figures 4A-4B show the miRNAs in the mirps cell 7^-〇„shirt_3〇2-expressing the integration and integration of the transgenic genes, which result in the mir_3〇2 family members (mir-302s) under the control of various concentrations of deoxygenated hydroxyl (Dox) Induced performance. (Fig. 4A) Quantitative PCR (qPCR; left panel) analysis of genomic DNA isolated from different mirps cell lines, showing that all mjjps cells carry only one or two accompanying copy sequences of the transgene, in which Transduction was detected in hHFC and Colo cells; gene (control group). Fluorescence in situ hybridization ^piu〇rescent plus-fishing/hybridization, FISH; right panel) The experiment further shows that the transgenic gene is inserted into a specific location of the human genome. This restriction gene transfer insert implies that the concentration of the overall mir-302 expression can affect the survival of the mirps cells (Fig. 4B). The northern blot analysis and histogram display corresponding to the Dox concentration that induces mir_3〇2s performance. . Figures 5A-5C show changes in the conversion of human normal hair follicles (hHFC) and cancer melanoma cancer Colo cells to ES-like pluripotent stem (mirps) cells. (Fig. 5A) In these mir-302-transduced cells (ie ··mirps-hHFC and mirPS-Colo cells) 102 201009074

中之形態的改變及細胞增殖率。在具去氧羥(Dox)誘發之 mir-302-轉導細胞中發現類ES圓形細胞形狀及極慢之細胞再 生率。(圖5B)源自該等mirps細胞之類胚胎體(EB)的形成以及 經導引分化成具陽性Tujl及/或ABCA2標記之神經元前驅細 胞。(圖5C)在限數稀釋法(limiting dilution)之後,由單一 mirPS 細胞形成EB的時程變化圖。該等細胞循環估計約為2〇_24小 時。 圖6A-6B顯示mir_3〇2s轉染及ES標記表現間的相關性。(圖 6A)整體miRNA表現之微陣列分析,其顯示全部之mir_3〇2家 族成員(mir-302s)係尚度表現在具d〇x誘發之mirps細胞中, 而非在s玄等原始之體細胞中(n=3,p<〇 〇1)。(圖6B)北方點墨 及西方點墨分析法,其獅具Dgx魏之該等mkps細胞表 現了豐富的ES細胞標記,包括:Qet3/4 _4)、%ΕΑ_3、 SSEA-4、Sox2 及 Nanog,但表現較少的 Klf4(n=4,p<〇 〇1), k與在人類ES WAG1_H1及WAG9_H9⑽巾齡刺細胞標 記極為相似。 圖7A-7D顯示在各種mirps細胞株中之基因體疆去甲 土化的里式(圖7A)HpaII酶切顯示在如收細胞中泛基因體 規模下之紐CpG低。_)將切舰之acct 經二亞硫酸鹽修飾杨3/4啟動子之9,4〇〇驗基對調節區域中 的腑位,其顯示在所有祕細胞中未甲基化之獅(或 103 201009074 AUCT)位的顯著增加。(圖7C)二亞硫酸鹽DNA序列,其顯示 在Oct3/4啟動子之起始位侧面的詳細曱基化映像圖。黑色圓 圈及白色圓圈分別表示該等曱基化及未甲基化之胞嘧唆位。 (圖7D)與mirPS-PC3細胞之起始轉移性癌症PC3細胞相較, mirPS-PC3細胞中之遷移能力的喪失。 · 圖 8A-8B 顯示在 colo、mirPS-Colo 及人類 ES WA01-H1 (H1) 與WA09-H9 (H9)細胞間之泛基因體基因表現分析。(囷8A)使 用人類基因體基因晶片(Human genome GeneChip)Ul33A&B © 及plus 2.0陣列(Affymetrix)之改變基因表現樣式的比較,其顯 示在mirPS-Colo與Hl(89%)以及H9(86°/〇)間的高相似度,但 與癌症型Colo(53%)細胞較不相似。白點表示與該穩定表現基 因(綠點)相較之高度可變基因。(圖8B)微陣列識別分化表現基 因之功能性基因群集’其證明在mirpS細胞中摘測到:es細 胞標記之顯著增加與黑色素癌致癌基因、發育訊息以及 mir-302-標的細胞增殖與DNA甲基化基因之顯著減少,其極 ❹ 為類似H1及H9細胞中所偵測到的現象(η=4,ρ<〇.〇ι)。圖 8C顯示北方點墨及西方點墨分析,其確認在mirps_c〇1〇細胞 中mir-302s、人類ES細胞標記及預測mir_3〇2標的基因之表 現樣式間的相關性,這與人類Es H1及H9細胞中之表現樣式 類似’除了 Klf4之表現以外(n=3 .,ρ<〇.〇1)。 圖 9Α-9Β 顯示在 hHFC、mirPS-hHFC 及人類 ES WA01-H1 (HI)與WA09>H9 (H9)細胞間之泛基因體基因表現 104 201009074 分析。(圖9A)使用人類基因體基因晶片ui33 plus 2.0陣列 (Affymetrix)之改變基因表現樣式的比較,其顯示在 mirPS-hHFC與Hl(96%)以及H9(91%)間的高相似度,但與 hHFC(47%-56%)體細胞較不相似。(圖9B)西方點墨分析,其 確認在mirPS-hHFC細胞中mir-3〇2s、人類ES細胞標記及預 測mir-302標的基因之該等表現樣式間的相關性,這與人類Es HI及H9細胞中之該等表現樣式類似,除了 Klf4及Klf5之表 〇 現以外。所列出之mir-302標的基因包括:十七個轉錄調節子、 一個組織蛋白去乙醯酶(HDA4)、兩個曱基CpG-結合蛋白質 (MECPl-p66及MECP2) ’以及三個細胞循環檢驗點蛋白質 (CDK2、細胞週期素cyclin D1及D2)。 圖10顯示源自在雌性假性懷孕免疫功能不足 SCID-beige小鼠之子宮或腹腔中之mirps移植物的類畸胎瘤 原生組織(n/total=6/6)。該等已分化組織包括所有三個胚胎生 Θ 殖層:外胚層、中胚層及内胚層,此係在蘇木精(hematoxylin) 及曙紅(eosin) (Η & E)染色後以其截然不同的細胞形態來判 疋。顯微鏡照片係以Nikon ΤΕ2000系統在2〇〇χ放大倍率下拍 攝。 圖11Α-110顯示mirPS細胞之導引多能性。分別由上至下 處理DHT、TGF-βΙ及BMP4,將該mirPS細胞誘發分化成類 精原細胞(圖11A-E)、纖維組織母細胞(圖11F_乃及軟骨細胞 (chondrocyte)(圖11K-0)組織細胞’其係在免疫功能不足之小 105 201009074 鼠中離體處理。該免疫功鮮足之概伽於_環境模擬移 植治療中。由左至右顯示之顯微照片指出:使用微分干涉差之 蘇木精染色(圖ΠΑ、F、K)、以轉殖基因mir_3〇2標記RGFP 標示之明視野(紅色)(圖11B、G、L)、以4,6-脒基-2-苯基吲哚 (4,6-diamidino-2-phenylindole)樣示之第一組織標記的免疫染 色法(藍色DAPI)(圖11C、H、M)、以螢光素標示之第二組織 標記的免疫染色法(綠色EGFP)(圖11D、I、N),以及所有三 個螢光標記之合併(圖11E、J、0)。在該等RGFP-明視野中之 小窗口中顯示在高放大倍率(600x)下之分化mirPS細胞的形 態。 106 201009074 【序列表】 <110> Lin,Shi-Lung 林希龍 Wu,David TS 吳堂熙 <120>使用可誘導之重組核醣核酸生成不具癌細胞特性之類胚胎幹細 胞/Generation of Tumor-Free. Embryonic Stem-Like Pluripotent Cells Using Inducible Recombinant RNA Agents <150> 12/149725 <151> 2008-05-07 <150〉 61/191327 <151> 2008-09-08Morphological changes and cell proliferation rates. The shape of ES-like round cells and the very slow cell regeneration rate were found in hydroxy-302-transduced cells with deoxyhydroxyl (Dox) induction. (Fig. 5B) Formation of embryonic bodies (EB) derived from such mirps cells and guided differentiation into neuronal precursor cells with positive Tujl and/or ABCA2 markers. (Fig. 5C) A time course change pattern of EB formed from a single mirPS cell after limiting dilution. These cell cycles are estimated to be approximately 2 〇 24 hours. Figures 6A-6B show the correlation between mir_3〇2s transfection and ES marker expression. (Fig. 6A) Microarray analysis of overall miRNA expression, showing that all mir_3〇2 family members (mir-302s) are predominantly expressed in dmirx-induced mirps cells, rather than in s Xuan et al. In the cells (n=3, p<〇〇1). (Fig. 6B) Northern point ink and western point ink analysis method, the lions Dgx Weizhi these mkps cells showed abundant ES cell markers, including: Qet3/4 _4), %ΕΑ_3, SSEA-4, Sox2 and Nanog However, Klf4 (n=4, p < 〇〇 1), k, which performed less, is very similar to the markers of human ES WAG1_H1 and WAG9_H9 (10). Figures 7A-7D show that the HpaII digestion of the gene in the various mirps cell lines (Fig. 7A) shows that the CpG is low in the ubiquitin size of the harvested cells. _) will cut the ship's acct via the disulfite modified Yang 3/4 promoter 9,4 〇〇 test pair in the regulatory region, which shows the unmethylated lion in all secret cells (or 103 201009074 AUCT) Significant increase in position. (Fig. 7C) Disulfite DNA sequence showing a detailed thiolated map on the side of the start of the Oct3/4 promoter. Black circles and white circles indicate the thiolated and unmethylated cytosine positions, respectively. (Fig. 7D) Loss of migration ability in mirPS-PC3 cells compared to the initial metastatic cancer PC3 cells of mirPS-PC3 cells. Figure 8A-8B shows the analysis of pan-gene expression in colo, mirPS-Colo and human ES WA01-H1 (H1) and WA09-H9 (H9) cells. (囷8A) Comparison of altered gene expression patterns using Human genome GeneChip Ul33A & B© and plus 2.0 arrays (Affymetrix), shown in mirPS-Colo and Hl (89%) and H9 (86) High similarity between °/〇), but less similar to cancer-type Colo (53%) cells. White dots indicate highly variable genes compared to the stable expression gene (green dot). (Fig. 8B) Microarray recognizes functional gene clusters of differentiation-expressing genes' which demonstrates in mpreS cells: significant increase in es cell markers and melanoma oncogenes, developmental messages, and mir-302-target cell proliferation and DNA A significant reduction in methylation genes is found to be similar to that detected in H1 and H9 cells (η = 4, ρ < 〇.〇ι). Figure 8C shows Northern blotting and western blotting analysis confirming the correlation between the expression patterns of mir-302s, human ES cell markers, and predicted mir_3〇2 genes in mirps_c〇1〇 cells, which is related to human Es H1 and The pattern of expression in H9 cells was similar to 'except for the expression of Klf4 (n=3., ρ<〇.〇1). Figure 9Α-9Β shows the ubiquitin gene expression between hHFC, mirPS-hHFC and human ES WA01-H1 (HI) and WA09>H9 (H9) cells 104 201009074 Analysis. (Fig. 9A) Comparison of altered gene expression patterns using the human genome gene chip ui33 plus 2.0 array (Affymetrix) showing high similarity between mirPS-hHFC and Hl (96%) and H9 (91%), but It is less similar to hHFC (47%-56%) somatic cells. (Fig. 9B) Western blot analysis confirming the correlation between these expression patterns of mir-3〇2s, human ES cell markers and predicted mir-302 genes in mirPS-hHFC cells, which is related to human Es HI and These patterns of expression in H9 cells are similar except for the appearance of Klf4 and Klf5. The listed mir-302 genes include: seventeen transcriptional regulators, one tissue protein deacetylase (HDA4), two thiol-based CpG-binding proteins (MECP1-p66 and MECP2), and three cell cycles. Checkpoint proteins (CDK2, cyclin D1 and D2). Figure 10 shows teratomas-like native tissue (n/total = 6/6) derived from mirps grafts in the uterus or peritoneal cavity of female pseudopregnant immune function SCID-beige mice. These differentiated tissues include all three embryonic vegetative layers: ectoderm, mesoderm and endoderm, which are succinctly stained after hematoxylin and eosin (Η & E) staining. Different cell morphology is used to judge. The microscope photographs were taken at 2 〇〇χ magnification using a Nikon ΤΕ2000 system. Figure 11 - 110 shows the guiding pluripotency of mirPS cells. DHT, TGF-βΙ and BMP4 were treated from top to bottom, respectively, and the mirPS cells were induced to differentiate into spermatogonia (Fig. 11A-E) and fibroblasts (Fig. 11F_ and chondrocyte) (Fig. 11K) -0) Tissue cells' their lines are treated ex vivo in mice with insufficient immune function. The immune function is abundant in _environmental simulation transplantation. The photomicrograph shown from left to right indicates: use Heterogeneous differential interference hematoxylin staining (Fig. ΠΑ, F, K), marked with the transgenic gene mir_3〇2 labeled RGFP marked bright field (red) (Fig. 11B, G, L), with 4,6-mercapto- 2-phenylpurine (4,6-diamidino-2-phenylindole)-like immunostaining of the first tissue marker (blue DAPI) (Fig. 11C, H, M), second labeled with luciferin Tissue-tagged immunostaining (green EGFP) (Fig. 11D, I, N), and the combination of all three fluorescent markers (Fig. 11E, J, 0). Displayed in small windows in these RGFP-bright fields Morphology of differentiated mirPS cells at high magnification (600x) 106 201009074 [Sequence Table] <110> Lin, Shi-Lung Lin Xilong Wu, David TS Wu Tangxi<1 20> Use of inducible recombinant ribonucleic acid to generate embryonic stem cells without cancer cell characteristics/Generation of Tumor-Free. Embryonic Stem-Like Pluripotent Cells Using Inducible Recombinant RNA Agents <150> 12/149725 <151> 2008-05 -07 <150> 61/191327 <151> 2008-09-08

<150〉 61/193438 <151> 2008-11-28 <150> PCT/US09/30432 <151> 2009-01-08 <150〉 12/318806 <151> 2009-01-08 <160〉 53 < 170> Patentln version 3.5 <210> 1 <211〉 12 <212> DNA <213> 人造序列 <220〉 <223>化學合成募核苷酸 <400〉 1 12 gctaagccag gc <210〉 2 <211> 12 <212> DNA <213>人造序列 <220> <223>化學合成寡核苷酸 107 201009074 <400〉2 gcctggctta gc <210> 3 <211> 17 <212> RNA <213> 人造序列 <220〉 <223>化學合成募核苷酸 <400> 3 uaagugcuuc cauguuu <210〉4 <211> 8 <212> DNA <213>人造序列 <220> <223>化學合成募核苷酸 <400> 4 gtaagagk <210> 5 <211> 10 <212> DNA <213> 人造序列 <220> <223>化學合成募核苷酸 <400> 5 gwkscyrcag <210> 6 <211> 7 <212> DNA <213> 人造序列 <220> <223>化學合成募核苷酸 201009074 <400〉 6 tactway <210> 7 <211> 17 <212> DNA <213> 人造序列 <220> <223>化學合成寡核苷酸 <400〉 7 tytycttttt tttttts<150> 61/193438 <151> 2008-11-28 <150> PCT/US09/30432 <151> 2009-01-08 <150> 12/318806 <151> 2009-01-08 <160> 53 <170> Patentln version 3.5 <210> 1 <211> 12 <212> DNA <213> Artificial sequence <220><223> Chemical synthesis nucleotides <400 〉 1 12 gctaagccag gc <210〉 2 <211> 12 <212> DNA <213> artificial sequence <220><223> chemical synthesis oligonucleotide 107 201009074 <400>2 gcctggctta gc <;210> 3 <211> 17 <212> RNA <213> Artificial sequence <220><223> Chemical synthesis nucleotides <400> 3 uaagugcuuc cauguuu <210>4 <211> 8 <212> DNA <213> artificial sequence <220><223> chemical synthesis nucleotides <400> 4 gtaagagk <210> 5 <211> 10 <212> DNA <213> Artificial sequence <220><223>Chemical synthesis nucleotides <400> 5 gwkscyrcag <210> 6 <211> 7 <212> DNA <213> Artificial sequence <220> ≪ 223 > chemical synthetic nucleotides 201009074 <400> 6 tactway <210> 7 <211> 17 <212> DNA <213> artificial sequence <220><223> chemical synthesis oligo Glycoside <400〉 7 tytycttttt tttttts

<210〉 8 <211> 19 <212> DNA <213> 人造序列 <220> <223>化學合成募核苷酸 <220> <221> misc_feature <222〉(15):(15) <223> n is a, c, g, or t <400〉8 tctctctctc tctcnctag <210〉 9 <211> 23 <212> RNA <213>人造序列 <220> <223>化學合成募核苷酸 <400> 9 uaagugcuuc cauguuuuag ugu <210〉 10 201009074 <211> 23 <212> RNA <213>人造序列 <220> <223>化學合成募核苷酸 <400> 10 uaagugcuuc cauguuuugg uga <210> 11 <211> 23 <212> RNA <213>人造序列 <220> <223>化學合成募核苷酸 <400> 11 uaagugcuuc cauguuuuag uag <210> 12 <211> 23 <212> RNA <213>人造序列 <220> <223>化學合成募核苷酸 <400〉 12 uaagugcuuc cauguuucag ugg <210> 13 <211> 23 <212> RNA <213>人造序列 <220> <223>化學合成募核苷酸 <400> 13 uaagugcuuc cauguuugag ugu <210> 14 201009074 <211> 42 <212〉DN A <213> 人造序列 <220> <223>化學合成寡核苷酸 <400〉 14 gtaagaggat ccgatcgcag gagcgcacca tcttcttcaa ga 42 <210〉 15 <211> 46 <212> DNA <213> 人造序列<210> 8 <211> 19 <212> DNA <213> Artificial sequence <220><223> Chemical synthesis nucleotides <220><221> misc_feature <222> ): (15) <223> n is a, c, g, or t <400>8 tctctctctc tctcnctag <210> 9 <211> 23 <212> RNA <213> artificial sequence <220><223>Chemical Synthetic Nucleotide<400> 9 uaagugcuuc cauguuuuag ugu <210> 10 201009074 <211> 23 <212> RNA <213> Artificial Sequence <220><223> Chemistry Synthetic nucleotides <400> 10 uaagugcuuc cauguuuugg uga <210>11 <211> 23 <212> RNA <213> artificial sequence <220><223> chemical synthesis nucleotides <400> 11 uaagugcuuc cauguuuuag uag <210> 12 <211> 23 <212> RNA <213> artificial sequence <220><223> chemical synthesis nucleotides <400> 12 uaagugcuuc cauguuucag ugg &lt ;210> 13 <211> 23 <212> RNA <213> artificial sequence <220><223> chemical synthesis nucleotides ≪400> 13 uaagugcuuc cauguuugag ugu <210> 14 201009074 <211> 42 <212>DN A <213> Artificial sequence <220><223> Chemical synthesis oligonucleotide <400> 14 Gtaagaggat ccgatcgcag gagcgcacca tcttcttcaa ga 42 <210> 15 <211> 46 <212> DNA <213> Artificial sequence

<220> <223>化學合成寡核苷酸 <400> 15 46 42 cgcgtcttga agaagatggt gcgctcctgc gatcggatcc tcttac <210〉 16 <211> 42 <212> DNA <213> 人造序列 <220> <223>化學合成募核苷酸 <400〉 16 gtaagaggat ccgatcgctt gaagaagatg gtgcgctcct ga <210> 17 <211> 46 <212> DNA <213>人造序列 <220> <223>化學合成募核苷酸 <400> 17 cgcgtcagga gcgcaccatc ttcttcaagc gatcggatcc tcttac 46 <210〉 18 111 201009074 <211> 70 <212> DNA <213>人造序列 <220> <223>化學合成募核苷酸 <400 18 gtaagaggat ccgatcgcag gagcgcacca tcttcttcaa gttaacttga agaagatggt gcgctcctga <210> 19 <211> 74 <212> DNA <213>人造序列 <220〉 <223>化學合成募核苷酸 <400> 19 cgcgtcagga gcgcaccatc ttcttcaagt taacttgaag aagatggtgc gctcctgcga tcggatcctc ttac <210> 20 <211> 47 <212> DNA <213>人造序列 <220> <223>化學合成募核苷酸 <400 20 cgcgttacta actggtacct cttctttttt tttttgatat cctgcag <210> 21 <211> 45 <212> DNA <213>人造序列 <220> <223>化學合成寡核苷酸 <400> 21 201009074 45 gtcctgcagg atatcaaaaa aaaaagaaga ggtaccagtt agtaa <210> 22 <211> 689 <212> DNA <213>人造序列 <220> <223> 藉由從海葵(ifeimicto crispa)衍生來之HcRedl彩色蛋白質基因 (chromoprotein gene)於第69個胺基酸插入天門冬胺酸(aspartate (Asp))而生成之突 變紅色螢光蛋白基因 <400> 22 atggtgagcg gcctgctgaa ggagagtatg cgcatcaaga tgtacatgga gggcaccgtg 60<220><223>Chemical Synthesis Oligonucleotide <400> 15 46 42 cgcgtcttga agaagatggt gcgctcctgc gatcggatcc tcttac <210> 16 <211> 42 <212> DNA <213> Artificial Sequence <220><223>Chemical Synthetic Nucleotide<400> 16 gtaagaggat ccgatcgctt gaagaagatg gtgcgctcct ga <210> 17 <211> 46 <212> DNA <213> Artificial Sequence <220><223> Chemical synthetic nucleotides <400> 17 cgcgtcagga gcgcaccatc ttcttcaagc gatcggatcc tcttac 46 <210> 18 111 201009074 <211> 70 <212> DNA <213> artificial sequence <220><223> chemical synthesis Nucleotide <400 18 gtaagaggat ccgatcgcag gagcgcacca tcttcttcaa gttaacttga agaagatggt gcgctcctga <210> 19 <211> 74 <212> DNA <213> artificial sequence <220><223><400> 19 cgcgtcagga gcgcaccatc ttcttcaagt taacttgaag aagatggtgc gctcctgcga tcggatcctc ttac <210> 20 <211> 47 <212> DNA <213> artificial sequence <220><223> Chemical Synthetic Nucleotide <400 20 cgcgttacta actggtacct cttctttttt tttttgatat cctgcag <210> 21 <211> 45 <212> DNA <213> Artificial Sequence <220><223> Chemical Synthesis Oligonucleotide <400> 21 201009074 45 gtcctgcagg atatcaaaaa aaaaagaaga ggtaccagtt agtaa <210> 22 <211> 689 <212> DNA <213> artificial sequence <220><223> (ifeimicto crispa) derived HcRedl chromoprotein gene in the 69th amino acid inserted aspartate (aspartate (Asp)) to generate a mutant red fluorescent protein gene <400> 22 atggtgagcg gcctgctgaa ggagagtatg Cgcatcaaga tgtacatgga gggcaccgtg 60

aacggccact acttcaagtg cgagggcgag ggcgacggca accccttcgc cggcacccag 120 agcatgagaa tccacgtgac cgagggcgcc cccctgccct tcgccttcga catcctggcc 180 ccctgctgcg agtacggcag caggacgacc ttcgtgcacc acaccgccga gatccccgac 240 ttcttcaagc agagcttccc cgagggcttc acctgggaga gaaccaccac ctacgaggac 300 ggcggcatcc tgaccgccca ccaggacacc agcctggagg gcaactgcct gatctacaag 360 gtgaaggtgc acggcaccaa cttccccgcc gacggccccg tgatgaagaa caagagcggc 420 ggctgggagc ccagcaccga ggtggtgtac cccgagaacg gcgtgctgtg cggccggaac 480 gtgatggccc tgaaggtggg cgaccggcac ctgatctgcc accactacac cagctaccgg 540 agcaagaagg ccgtgcgcgc cctgaccatg cccggcttcc acttcaccga catccggctc 600 cagatgctgc ggaagaagaa ggacgagtac ttcgagctgt acgaggccag cgtggcccgg 660 tacagcgacc tgcccgagaa ggccaactg 689 <210> 23 <211> 27 <212> DNA <213> 夂造序列 <220> <223> 化學合成募核苷酸 <400> 23 113 201009074 ctcgagcatg gtgagcggcc tgctgaa 27 <210 24 <211> 27 <212> DNA <213>人造序列 <220> <223>化學合成募核苷酸 <400> 24 tctagaagtt ggccttctcg ggcaggt 27 <210> 25 <211> 89 <212> DNA <213>人造序列 <220> <223>化學合成募核苷酸 <400> 25 gtaagtggtc cgatcgtcgc gacgcgtcat tactaactat caatatctta atcctgtccc ttttttttcc acagtaggac cttcgtgcaaacggccact acttcaagtg cgagggcgag ggcgacggca accccttcgc cggcacccag 120 agcatgagaa tccacgtgac cgagggcgcc cccctgccct tcgccttcga catcctggcc 180 ccctgctgcg agtacggcag caggacgacc ttcgtgcacc acaccgccga gatccccgac 240 ttcttcaagc agagcttccc cgagggcttc acctgggaga gaaccaccac ctacgaggac 300 ggcggcatcc tgaccgccca ccaggacacc agcctggagg gcaactgcct gatctacaag 360 gtgaaggtgc acggcaccaa cttccccgcc gacggccccg tgatgaagaa caagagcggc 420 ggctgggagc ccagcaccga ggtggtgtac cccgagaacg gcgtgctgtg cggccggaac 480 gtgatggccc tgaaggtggg cgaccggcac ctgatctgcc accactacac cagctaccgg 540 agcaagaagg ccgtgcgcgc cctgaccatg cccggcttcc acttcaccga catccggctc 600 cagatgctgc ggaagaagaa ggacgagtac ttcgagctgt acgaggccag cgtggcccgg 660 tacagcgacc tgcccgagaa ggccaactg 689 < 210 > 23 < 211 > 27 < 212 > DNA < 213 > Fan manufacturing sequence < 220 ><223> Chemical Synthetic Nucleotide <400> 23 113 201009074 ctcgagcatg gtgagcggcc tgctgaa 27 <210 24 <211> 27 <212> DNA <213> Artificial Sequence <220><223>Chemical Synthetic Nucleotide<400> 24 tctagaagtt ggccttctcg ggcaggt 27 <210> 25 <211> 89 <212> DNA <213> Artificial Sequence <220><223> Chemistry Synthetic nucleotides <400> 25 gtaagtggtc cgatcgtcgc gacgcgtcat tactaactat caatatctta atcctgtccc ttttttttcc acagtaggac cttcgtgca

60 89 <210> 26 <211> 89 <212> DNA <213> 人造序列 <220> <223>化學合成募核苷酸 <400 26 tgcacgaagg tcctactgtg gaaaaaaaag ggacaggatt aagatattga tagttagtaa60 89 <210> 26 <211> 89 <212> DNA <213> artificial sequence <220><223> chemical synthetic nucleotide <400 26 tgcacgaagg tcctactgtg gaaaaaaaag ggacaggatt aagatattga tagttagtaa

60 tgacgcgtcg cgacgatcgg accacttac <210> 27 <211> 82 <212> DNA <213> 人造序列 114 89 201009074 <220〉 <223>化學合成募核苷酸 <400〉 27 gtccgatcgt cataagtgct tccatgtttt agtgtgctaa gccaggcaca ctaaaacatg 60 gaagcactta tcgacgcgtc at 82 <210> 28 <211> 82 <212〉DNA <213>人造序列 <220>60 tgacgcgtcg cgacgatcgg accacttac <210> 27 <211> 82 <212> DNA <213> artificial sequence 114 89 201009074 <220> <223> chemical synthesis nucleotides <400> 27 gtccgatcgt cataagtgct tccatgtttt Agtgtgctaa gccaggcaca ctaaaacatg 60 gaagcactta tcgacgcgtc at 82 <210> 28 <211> 82 <212>DNA <213> artificial sequence <220>

<223>化學合成募核苷酸 <400> 28 60 82 60 91 atgacgcgtc gataagtgct tccatgtttt agtgtgcctg gcttagcaca ctaaaacatg gaagcactta tgacgatcgg ac <210> 29 <211> 91 <212> DNA <213> 人造序列 <220 <223>化學合成募核苷酸 <400> 29 gtccgatcgt cccaccactt aaacgtggat gtacttgctt tgaaactaaa gaagtaagtg cttccatgtt ttggtgatgg atctcgagct c <210> 30 <211> 91 <212> DNA <213>人造序列 <220> <223>化學合成募核苷酸 <400> 30 gagctcgaga tccatcacca aaacatggaa gc 这 cttactt ctttagtttc aaagcaagta 60 115 201009074 catccacgtt taagtggtgg gacgatcgga c <210> 31 <211> 95 <212> DNA <213>人造序列 <220> <223>化學合成募核苷酸 <400> 31 atctcgagct cgctcccttc aactttaaca tggaagtgct ttctgtgact ttgaaagtaa gtgcttccat gttttagtag gagtcgctag cgcta <210> 32 <211> 95 <212> DNA <213>人造序列 <220> <223>化學合成寡核苷酸 <400> 32 tagcgctagc gactcctact aaaacatgga agcacttact ttcaaagtca cagaaagcac ttccatgtta aagttgaagg gagcgagctc gagat <210> 33 <211> 90 <212> DNA <213>人造序列 <220 <223>化學合成募核苷酸 <400> 33 cgctagcgct acctttgctt taacatggag gtacctgctg tgtgaaacag aagtaagtgc ttccatgttt cagtggaggc gtctagacat<223> Chemical Synthetic Nucleotide <400> 28 60 82 60 91 atgacgcgtc gataagtgct tccatgtttt agtgtgcctg gcttagcaca ctaaaacatg gaagcactta tgacgatcgg ac <210> 29 <211> 91 <212> DNA <213> Artificial Sequence <;220< 223 > chemical synthesis nucleotides <400> 29 gtccgatcgt cccaccactt aaacgtggat gtacttgctt tgaaactaaa gaagtaagtg cttccatgtt ttggtgatgg atctcgagct c <210> 30 <211> 91 <212> DNA <213> artificial sequence<220><223>Chemical Synthetic Nucleotide<400> 30 gagctcgaga tccatcacca aaacatggaa gc This cttactt ctttagtttc aaagcaagta 60 115 201009074 catccacgtt taagtggtgg gacgatcgga c <210> 31 <211> 95 <212> DNA <213> Artificial sequence <220><223>Chemical synthetic nucleotide <400> 31 atctcgagct cgctcccttc aactttaaca tggaagtgct ttctgtgact ttgaaagtaa gtgcttccat gttttagtag gagtcgctag cgcta <210> 32 <211> 95 <212> DNA <213> Artificial sequence <220><223> chemical synthesis oligonucleotide<400> 32 tagcgctagc gactcctact aaaacatgga agcacttact ttcaaagtca cagaaagcac ttccatgtta aagttgaagg gagcgagctc gagat <210> 33 <211> 90 <212> DNA <213> artificial sequence <220 <223> chemical synthesis nucleotides <400>; 33 cgctagcgct acctttgctt taacatggag gtacctgctg tgtgaaacag aagtaagtgc ttccatgttt cagtggaggc gtctagacat

<210> 34 <211> 90 <212〉 DNA 60201009074 <213>人造序列 <220 <223>化學合成寡核苷酸 <400> 34 atgtctagac gcctccactg aaacatggaa gcacttactt ctgtttcaca cagcaggtac ctccatgtta aagcaaaggt agcgctagcg 90<210> 34 <211> 90 <212> DNA 60201009074 <213> artificial sequence <220 <223> chemical synthesis oligonucleotide <400> 34 atgtctagac gcctccactg aaacatggaa gcacttactt ctgtttcaca cagcaggtac ctccatgtta aagcaaaggt agcgctagcg 90

<210> 35 <211> 82 <212> DNA <213>人造序列 <220> <223>化學合成募核苷酸 <400> 35 cgtctagaca taacactcaa acatggaagc acttagctaa gccaggctaa gtgcttccat gtttgagtgt tcgacgcgtc at 60 82 ❹ <210> 36 <211> 82 <212> DNA <213>人造序列 <220> <223>化學合成募核苷酸 <400〉 36 atgacgcgtc gaacactcaa acatggaagc acttagcctg gcttagctaa gtgcttccat gtttgagtgt tatgtctaga eg 60 82 <210> 37 <211> 10 <212> DNA <213>人造序列 <220> <223>化學合成募核苷酸 <400> 37 117 201009074 gtaagaggat <210> 38 <211> 6 <212> DNA <213>人造序列 <220> <223>化學合成募核苷酸 <400> 38 guragu <210> 39 <211> 8 <212> DNA <213>人造序列 <220> <223>化學合成募核苷酸 <400〉 39 gtaagagt <210> 40 <211> 7 <212> DNA <213>人造序列 <220> <223>化學合成募核苷酸 <400> 40 gtagagt <210> 41 <211> 6 <212> DNA <213>人造序列 <220> <223>化學合成募核苷酸 <400> 41 201009074 gtaagt <210> 42 <211> 12 <212> DNA <213>人造序列 <220> <223>化學合成寡核苷酸 <400> 42 gatatcctgc ag<210> 35 <211> 82 <212> DNA <213> artificial sequence <220><223> chemical synthesis nucleotides <400> 35 cgtctagaca taacactcaa acatggaagc acttagctaa gccaggctaa gtgcttccat gtttgagtgt tcgacgcgtc at 60 82 ❹ <210> 36 <211> 82 <212> DNA <213> artificial sequence <220><223> chemical synthesis nucleotides <400> 36 atgacgcgtc gaacactcaa acatggaagc acttagcctg gcttagctaa gtgcttccat gtttgagtgt tatgtctaga Eg 60 82 <210> 37 <211> 10 <212> DNA <213> artificial sequence <220><223> chemical synthesis nucleotides <400> 37 117 201009074 gtaagaggat <210> 38 <211> 6 <212> DNA <213> artificial sequence <220><223> chemical synthesis nucleotides <400> 38 guragu <210> 39 <211> 8 <212>; DNA <213> artificial sequence <220><223> chemical synthetic nucleotide <400> 39 gtaagagt <210> 40 <211> 7 <212> DNA <213> artificial sequence<213>;220><223>Chemistry Colony nucleotides <400> 40 gtagagt <210> 41 <211> 6 <212> DNA <213> artificial sequence <220><223> chemical synthesis nucleotides <400> 41 201009074 gtaagt <210> 42 <211> 12 <212> DNA <213> artificial sequence <220><223> chemical synthesis oligonucleotide <400> 42 gatatcctgc ag

<210 43 <211> 11 <212〉DNA <213> 人造序列 <220> <223>化學合成寡核苷酸 <400> 43 wuccaagggg g <210> 44 <211> 20 <212> DNA <213> 人造序列 <220〉 <223〉primer <400> 44 gaggagttga gggtactgtg <210> 45 <211> 20 <212〉DNA <213>人造序列 <220〉 <223〉primer <400〉 45 201009074 gaggagctga gggcactgtg <210> 46 <211> 21 <212> DNA <213>人造序列 <220> <223> primer <400> 46 gtagaagtgc ctctgccttc c <210> 47 <211> 27 <212> DNA <213>人造序列 <220> <223> primer <400〉 47 gaggctggag tagaaggatt gctttgg <210> 48 <211> 27 <212> DNA <213>人造序列 <220> <223> primer <400> 48 ccctcctgac ccatcacctc caccacc <210> 49 <211> 63 <212〉DNA <213>人造序列 <220> <223〉primer <400> 49 60 201009074 63 ggccagtgaa ttgtaatacg actcactata gggaggcggt tttttttttt tttttttttt ttt <210> 50 ' <211> 69<210 43 <211>11 <212>DNA<213> Artificial sequence <220><223>Chemical synthesis oligonucleotide <400> 43 wuccaagggg g <210> 44 <211> 20 <212> DNA <213> artificial sequence <220><223>primer<400> 44 gaggagttga gggtactgtg <210> 45 <211> 20 <212>DNA <213> artificial sequence<212> 220> <223>primer <400> 45 201009074 gaggagctga gggcactgtg <210> 46 <211> 21 <212> DNA <213> artificial sequence <220><223>primer<400> 46 gtagaagtgc ctctgccttc c <210> 47 <211> 27 <212> DNA <213> artificial sequence <220><223> primer <400> 47 gaggctggag tagaaggatt gctttgg <210> 48 <211&gt 27 <212> DNA <213> artificial sequence <220><223> primer <400> 48 ccctcctgac ccatcacctc caccacc <210> 49 <211> 63 <212>DNA <213> Sequence <220><223>primer<400> 49 60 201009074 63 ggccagtgaa ttgtaatacg Actcactata gggaggcggt tttttttttt tttttttttt ttt <210> 50 ' <211> 69

<212> RNA - <213>人造序列 <220> <223> intron <400〉 50 60 69 ccaccacuua aacguggaug uacuugcuuu gaaacuaaag aaguaagugc uuccauguuu ❹ uggugaugg <210> 51 <211> 73 <212> RNA <213>人造序列 <220> <223> intron <400〉 51 60 73 gcucccuuca acuuuaacau ggaagugcuu ucugugacuu ugaaaguaag ugcuuccaug uuuuaguagg agu ❿ <210> 52 <211> 68 <212> RNA <213>人造序列 <220> <223> intron <400> 52 60 ccuuugcuuu aacauggagg uaccugcugu gugaaacaga aguaagugcu uccauguuuc aguggagg <210> 53 121 68 201009074 <211> 62 <212> DNA <213>人造序列 <220> <223> intron <400〉 53 taacactcaa acatggaagc acttagctaa gccaggctaa gtgcttccat gtttgagtgt 60 tc 62<212> RNA - <213> artificial sequence <220><223> intron <400> 50 60 69 ccaccacuua aacguggaug uacuugcuuu gaaacuaaag aaguaagugc uuccauguuu ❹ uggugaugg <210> 51 <211> 73 <212> RNA <213> artificial sequence <220><223> intron <400> 51 60 73 gcucccuuca acuuuaacau ggaagugcuu ucugugacuu ugaaaguaag ugcuuccaug uuuuaguagg agu ❿ <210> 52 <211> 68 <212> RNA <213&gt Artificial sequence <220><223> intron <400> 52 60 ccuuugcuuu aacauggagg uaccugcugu gugaaacaga aguaagugcu uccauguuuc aguggagg <210> 53 121 68 201009074 <211> 62 <212> DNA <213> artificial sequence<;220><223> intron <400> 53 taacactcaa acatggaagc acttagctaa gccaggctaa gtgcttccat gtttgagtgt 60 tc 62

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Claims (1)

201009074 七、申請專利範圍: 1. 一種用於將至少一細胞轉化為至少一不含腫瘤之多能性幹 細胞之方法,其包含以下步驟: 0)建構一重組核酸組成物,其能夠被傳送、轉錄及處理成 至少一個基因靜默效應子,其干擾複數個由mir-302所 標的之細胞基因; (b)以該重組核酸組成物来處理一細胞基質。 2.如請求項1之方法,其中該細胞係選自一哺乳動物細胞、 一人類細胞、一正常體細胞、一患病體細胞、一腫瘤細胞、 一癌症細胞、一人類頭髮毛囊細胞、一人類皮廣細胞、及 其組合細胞。 之方法其中5亥細胞基質表現複數個由mir-302 所標的之細胞基因。201009074 VII. Patent Application Range: 1. A method for converting at least one cell into at least one tumor-free pluripotent stem cell, comprising the steps of: 0) constructing a recombinant nucleic acid composition capable of being delivered, Transcribed and processed into at least one gene silencing effector that interferes with a plurality of cellular genes designated by mir-302; (b) treating a cellular matrix with the recombinant nucleic acid composition. 2. The method of claim 1, wherein the cell line is selected from the group consisting of a mammalian cell, a human cell, a normal somatic cell, a diseased somatic cell, a tumor cell, a cancer cell, a human hair follicle cell, and a cell line. Human skin wide cells, and their combined cells. In the method, the 5H cell matrix exhibits a plurality of cellular genes designated by mir-302. mir-: . ,/、中處理該細胞基質之該步驟係在适 斤才不的之該等細胞基因受到抑制的-條件下進行 5.如請求項〗之方法 個 重’其中該重組核酸組成物包括至少 重、、且内含子,其如馬與秦3〇2同源之一序列。 6·如請求項!之方法 ώ mm ^ U重組核酸組成物包括一載體, 肩自質體、病毒載體、反轉位子、及其組合載 123 201009074 7. 如請求項1之方法,其中該重組核酸組成物包括—藥物可 誘發之基因表現啟動子。 8. 如請求項7之方法,其中該藥物可誘發之基因表現啟動子 係以一四環黴素衍生物或同等物來控制。 9. 如請求項8之方法,其巾該四賴素衍生物朗等物係選 自G418、四環黴素、去氧經、新黴素、安比西林、康黴 素、其等衍生物、及其組合。 0_如凊求項1之方法,其巾該重組紐組成物包括〜 ❹ 或基因表現系統。 I如清求項1之方法’其中該重組核酸組成物包括:一五端 供體剪接位、-内含子插入位、一分支點基序、一多哺咬 段、及一三端受體剪接位。 如”月求項11之方法,其中該重組核酸組成物係由一程序 形成,該程序係選自化學合成、核菁酸重組、基因工程、 及其組合。 ^ 13_如請求項12之方法’其中該五端供體剪接位包括一 SEQJD*N0·4序列或與其同源。 14·如請求項12之方法’其中該五端供體剪接位係與 5’-GTAAG-3,同源。 124 201009074 15.如请求項12之方法,其中該分支點基序包括一 SEQ.ID.N0.6序列或與其同源。 , 丨6·如請求項12之方法,其中該分支點基序包括 • 5’-TACTAAC-3’或與其同源。 17.如請求項12之方法’其中該多齡段包括一卿.腳〇 7 序列或一 SEQ.ID.N0.8序列,或與其同源。 ❹ 18.如請求項12之方法,其中該三端受體剪接位包括一 SEQ.ID.NO.5序列或與其同源。 19. 如請求項12之方法,其中該三端受體剪接位係與 5’-CTGCAG-3’同源。 20. 如請求項12之方法,其中該内含子插入位包括與mir_3〇2 同源之該基因靜默效應子。 21·如請求項1之方法’其中該重組核酸級成物進一步包括複 ©_外顯子,該等外顯子係選自榮光蛋白質標記基因、榮 光酵素基因、lac_Z乳糖表現基因、胚胎幹細胞標記基因、 病毒基因、細菌基因、細胞標記基因、跳躍基因、轉位子、 及其組合。 22.如請求項丨之方法,其中該基因靜默效應子包含與一 SEQ.ID.NO. 1序列或一 SEQ.ID.N0.2序列同源的一序列。 125 201009074 23. 如請求項丨之方法,其中該基因靜默效應子係與一 SEQ.ID.N0.3序列同源或互補,或兩者皆是。 24. 如請求項丨之方法,其中該基因靜默效應子係一重組類髮 夾型RNA’其包括與一 SEQ.ID.N0.9序列同源的一序列。 25. 如請求項丨之方法,其中該基因靜默效應子係一重組核酸 序列’其係以一 SEQ.ID.NO.27 序列及一 SEQ.ID.NO.28 序列之雜合物形成。 26. 如請求項丨之方法’其中該基因靜默效應子包括一重組 RNA ’ 其與包括一 SEq id n〇 9 序列、一 SEq ID N〇 1〇 序列、一 SEQ.ID.NO.ll 序列、一 SEQJD.NO. 12 序列、 一 SEQJD.NO.13序列、及其組合之序列同源。 27. 如請求項1之方法,其中該基因靜默效應子係以下列之一 雜合物的接合鏈結形成:一 SEQ.ID.NO.29序列、一 SEQ.ID.NO.30 序列、一 SEQ.ID.N0.31 序列、一 SEQ.ID.NO.32 序列、一 SEQ.ID.NO.33 序列、一 SEQ.ID.NO.34 序列、一 SEQ.ID.NO.35 序列、一 SEQ’ID_N(X36序列、及其組合。 28. 如請求項1之方法,其中該重組核酸組成物係選自一四環 黴素反應元素、一病毒或一第二型RNA聚合酶啟動子 (Pol-II)、或以上兩者、一 K〇zak 一致轉譯起始位、聚腺 苷酸化訊息、複數個限制/選殖位、及其組合。 126 201009074 29.如請求項1之方法’其中該重組核酸組成物係選自一 複製來源(origin of replication)、用來表現在複製勝任原核 生物細胞中之至少-個抗生素抗藥性基因的—SV4〇早熟 啟動子、用來在哺乳動物細胞中一可選擇的SV4〇複製來 源、及其組合。 %如請求項i之方法,射該重_酸組成物係以—基因傳 ❹ 送方法引介至該細胞巾,錄目傳送方法储自微脂體轉 染、化學義法、基因雛嶋重組、病減染、轉位 子插入、跳躍基因插入、顯微注射、電穿孔法、基因槍穿 透、及其組合。 應子係以一細胞内機制 外體處理、無義介導降 31.如δ青求項1之方法,其中該靜默效 釋放,該機制係選自rNA剪接、 解、及其組合。. ❹ 32.如請求項1之方法, 胞標記0et3/4。 其中該夕月b性幹細胞表現一胚胎幹細 33.如請求項1之方法, 胞之條件下培養。 其中該夕月b性幹細胞係在一無哺乳細 34.如請求項1之方法 胞系細胞。 其中該夕月t·性幹、細胞分化成類生殖細 35.如請求項1之方法, 細胞。 其中該夕雜幹細胞分化成-類精原 127 201009074 旎性幹細皰分化成一正常體 36.如請求項1之方法,其中該多 細胞。 37. 38. 名田跑分化成一纖維組 細胞分化成一軟骨細 如請求項1之方法,其中該多能性幹 織母細胞。 如請求項1之方法,其中該多能性幹 胞。The step of treating the cell matrix in mir-:., /, is carried out under conditions in which the cellular genes are inhibited. 5. The method of claim 1 is heavy, wherein the recombinant nucleic acid is composed The inclusions include at least a heavy, and intron, sequence such as a homolog of horse and Qin 3〇2. 6. If requested! The method ώ mm ^ U recombinant nucleic acid composition comprises a vector, a shoulder autosome, a viral vector, an inverted vector, and a combination thereof. 123 201009074 7. The method of claim 1, wherein the recombinant nucleic acid composition comprises a drug A gene expression promoter that can be induced. 8. The method of claim 7, wherein the drug-inducible gene expression promoter is controlled by a tetracycline derivative or equivalent. 9. The method according to claim 8, wherein the tetralin derivative derivative or the like is selected from the group consisting of G418, tetracycline, deoxygenated, neomycin, ampicillin, ketomycin, derivatives thereof, And their combinations. 0_ The method of claim 1, wherein the recombinant composition comprises a ~ 或 or a gene expression system. The method of claim 1, wherein the recombinant nucleic acid composition comprises: a five-terminal donor splice site, an intron insertion site, a branch point motif, a multi-bite segment, and a three-terminal receptor Splice bit. The method of claim 11, wherein the recombinant nucleic acid composition is formed by a program selected from the group consisting of chemical synthesis, nucleocyanate recombination, genetic engineering, and combinations thereof. ^ 13_ The method of claim 12 Wherein the five-terminal donor splice site comprises or is homologous to a sequence of SEQJD*N0·4. 14. The method of claim 12, wherein the five-terminal donor splice line is homologous to 5'-GTAAG-3 The method of claim 12, wherein the branch point motif comprises or is homologous to a SEQ.ID.N0.6 sequence. The method of claim 12, wherein the branch point motif Including • 5'-TACTAAC-3' or homologous thereto. 17. The method of claim 12, wherein the multi-aged segment comprises a singularity, an ankle 7 sequence or a SEQ.ID.N0.8 sequence, or the same The method of claim 12, wherein the tri-terminal receptor splice site comprises or is homologous to a SEQ.ID.NO.5 sequence. 19. The method of claim 12, wherein the tri-terminal receptor The splice position is homologous to 5'-CTGCAG-3'. 20. The method of claim 12, wherein the intron insertion bit comprises the same as mir_3〇2 The method of claim 1, wherein the recombinant nucleic acid sequence further comprises a complex exon, which is selected from the group consisting of a glory protein marker gene, a glory enzyme gene, lac_Z lactose expression gene, embryonic stem cell marker gene, viral gene, bacterial gene, cell marker gene, skip gene, transposon, and combinations thereof. 22. The method of claim ,, wherein the gene silencing effector comprises a SEQ. A sequence homologous to the sequence of ID.NO.1 or a sequence of SEQ.ID.N0.2. 125 201009074 23. The method of claim 1, wherein the gene silencing effector is a sequence of SEQ.ID.N0.3 Homologous or complementary, or both. 24. The method of claim 1, wherein the gene silencing effector is a recombinant hairpin RNA comprising a sequence homologous to a SEQ.ID.N0.9 sequence A sequence as claimed in claim 2, wherein the gene silencing effector is a recombinant nucleic acid sequence which is a hybrid of a sequence of SEQ.ID.NO.27 and a sequence of SEQ.ID.NO.28 Formed as a method of requesting The silent effector includes a recombinant RNA 'which includes an SEq id n〇9 sequence, an SEq ID N〇1〇 sequence, a SEQ.ID.NO.ll sequence, a SEQJD.NO. 12 sequence, and a SEQJD. The sequence of the NO. 13 sequence, and combinations thereof, is homologous. 27. The method of claim 1, wherein the gene silencing effector is formed by a joining junction of one of the following hybrids: a SEQ.ID.NO.29 sequence, a SEQ.ID.NO.30 sequence, a SEQ.ID.N0.31 sequence, a SEQ.ID.NO.32 sequence, a SEQ.ID.NO.33 sequence, a SEQ.ID.NO.34 sequence, a SEQ.ID.NO.35 sequence, a sequence SEQ ID NO: The method of claim 1, wherein the recombinant nucleic acid composition is selected from the group consisting of a tetracycline reaction element, a virus or a second type RNA polymerase promoter ( Pol-II), or both, a K〇zak consistent translation initiation site, a polyadenylation message, a plurality of restriction/selection sites, and combinations thereof. 126 201009074 29. The method of claim 1 wherein The recombinant nucleic acid composition is selected from an origin of replication, an SV4〇 precocious promoter for expressing at least one antibiotic resistance gene in a competent prokaryotic cell, for use in a mammalian cell. An alternative source of SV4〇 replication, and combinations thereof. % As in the method of claim i, the heavy acid composition - Gene transfer method is introduced to the cell towel, and the method of recording is stored from liposome transfection, chemical sense, gene recombination, disease subtraction, transposon insertion, skip gene insertion, microinjection, electroporation , gene gun penetration, and combinations thereof. The sub-system is treated with an intracellular mechanism exosome, and the nonsense mediates a decrease. 31. For example, the method of δ ̄ green, wherein the mechanism is selected from rNA splicing. , solution, and combinations thereof. ❹ 32. The method of claim 1, wherein the cell marker is 0et3/4. wherein the b-stem stem cell exhibits an embryonic stem. 33. The method of claim 1 is cultured under conditions of cells. Wherein the b-stem stem cell line is in a cell-free cell of the method of claim 1. The cell of the cell of claim 1 is characterized by the method of claim 1, wherein the cell is differentiated into a cell type. The cells are differentiated into a spermatophore 127 201009074 The dry blister is differentiated into a normal body 36. The method of claim 1, wherein the multicellular cell 37. 38. Mingtian runs into a fiber Group of cells differentiate into a cartilage The method of one request, wherein the pluripotent stem cells mother weave. The method of item 1 of the request, wherein the pluripotent stem cells. .如請求項1之方法,其中該多能性幹細胞係使用mir-302 微型核酶核酸及0ct3/4作為標記來選擇性地分離。 4〇·-種用來誘發mir捕_介導基因靜默效應之重組核酸組 成物’其包含: 至少-個内含子,其編碼可將至少一細胞轉化為一不含腫 瘤之多能性幹細胞的一基因靜默效應子,其中該内含子在 該細胞中被剪接出來以誘發mil>_3G2•介導基因靜默效應。The method of claim 1, wherein the pluripotent stem cell line is selectively isolated using mir-302 microribozyme nucleic acid and Oct3/4 as a label. 4. A recombinant nucleic acid composition for inducing a mir trap mediated gene silencing effect comprising: at least one intron encoding a pluripotent stem cell capable of transforming at least one cell into a tumor-free bacterium A gene silencing effector in which the intron is spliced out in the cell to induce a mil>_3G2• mediated gene silencing effect. 41·如請求項4G之組成物,其中該纽核酸組成物係以一程 序形成,該程序係選自化學合成、核苷酸重組、基因工程、 及其組合。 42.如請求項4〇之組成物,其中該内含子包含: (a)一内含子插入位,其編碼與mir-302同源之該基因靜默 效應子; (b)—五端供體剪接位及一三端受體剪接位; 128 201009074 (C) 一分支點基序;及 (d)—多嘧啶段。 43.如請求項42 + Λ , 夾型核射_含子I純括一類髮 酸序列,其包含與-SEQ瓜Ναΐ序列或一 SEQ.ID.NCU序列同源的—幹環結構。41. The composition of claim 4, wherein the neonucleic acid composition is formed in a process selected from the group consisting of chemical synthesis, nucleotide recombination, genetic engineering, and combinations thereof. 42. The composition of claim 4, wherein the intron comprises: (a) an intron insertion site encoding a gene silencing effector homologous to mir-302; (b) - five-terminal supply Somatic splice junction and a tri-terminal receptor splice site; 128 201009074 (C) a branch point motif; and (d)-polypyrimidine segment. 43. The method of claim 42 + Λ, the sandwich nucleus_containing I, comprises a nucleic acid sequence comprising a dry loop structure homologous to the -SEQ IDαΝ sequence or a SEQ.ID.NCU sequence. 如青长項42之組成物,其中該内含子插人位包括一核酸 序列,其與一 SEQ.ID.Na3序列同源或互補,或兩者皆 是 45. 如請求項42之組成物,其中該内含子插人位包括一類髮 夾型先驅微型核醣核酸(pre-miRNA)序列,其包括選自一 SEQ.ID.N0.9 序列、一 SEQ.ID.NO.10 序列、一 SEQ.ID.NO.ll 序列、一 SEQ.ID.NO.12 序列及一 SEQ.ID.NO· 13 序列。 46. 如請求項42之組成物,其中該分支點基序包括一腺核苷 (A)核苷酸,其位在包含一 SEQ.ID.N0.6序列或與其同源 的一核酸序列内。 47. 如請求項42之組成物,其中該分支點基序包括一腺核苷 (A)核苷酸’其位在包含至少一個與5’-TACTAAC-3’同源 之寡核苷酸基序的一核酸序列内。 129 201009074 48·如請求項42之組成物,其中該多嘧啶段包括一高τ或c 含量之核酸序列’其包含一 SEQ.ID.N0.7序列或一 SEQ.ID.N0.8序歹|J,或與其同源。 49. 如請求項42之組成物,其中該五端供體剪接位包括一核 酸序列,其包含一 SEQ.ID.N0.4序列或與其同源。 50. 如請求項42之組成物,其中該五端供體剪接位包括一核 酸序列,其包含5,-GTAAG-3,或與其同源。The composition of the apposition term 42, wherein the intron insertion site comprises a nucleic acid sequence homologous or complementary to a SEQ. ID. Na3 sequence, or both are 45. The composition of claim 42 Wherein the intron insertion site comprises a hairpin-type precursor mini-ribonucleic acid (pre-miRNA) sequence comprising a sequence selected from the group consisting of a SEQ.ID.N0.9 sequence, a sequence of SEQ.ID.NO.10, SEQ.ID.NO.11 sequence, a SEQ.ID.NO.12 sequence and a SEQ.ID.NO.13 sequence. 46. The composition of claim 42, wherein the branch point motif comprises a nucleotide of adenosine (A) in a nucleic acid sequence comprising or homologous to a sequence of SEQ.ID.N0.6 . 47. The composition of claim 42, wherein the branch point motif comprises a nucleoside (A) nucleotide that is at least one oligonucleotide comprising a homologous to 5'-TACTAAC-3' Sequence within a nucleic acid sequence. 129. The composition of claim 42, wherein the polypyrimidine segment comprises a nucleic acid sequence having a high τ or c content, which comprises a sequence of SEQ.ID.N0.7 or a sequence of SEQ.ID.N0.8 |J, or homologous to it. 49. The composition of claim 42, wherein the five-terminal donor splice site comprises a nucleic acid sequence comprising a sequence of SEQ. ID. N0.4 or homologous thereto. 50. The composition of claim 42, wherein the five-terminal donor splice site comprises a nucleic acid sequence comprising 5,-GTAAG-3, or homologous thereto. 51. 如請求項42之組成物,其中該三端受體剪接位包括一核 酸序列,其包含一 SEQ.ID.N0.5序列或與其同源。 52. 如請求項42之組成物,其中該三端受體剪接位包括一核 酸序列’其包含5,-CTGCAG-3,或與其同源。 53. 如請求項4〇之組成物,其中該基因靜默效應子包括一核 酸序列’其與一 SEQ.ID.N0.3序列同源或互補,或兩者 〇 皆是。 54. 如請求項4〇之組成物,其中該基因靜默效應子包括一核 酸序列,其包含一 SEQ.ID.NO.10 序列、一 SEQ.ID.NO.ll 序列、一 SEQ.ID.NO.12 序列,及/或一 SEQ.ID.MX13 序 列。 55. 如請求項4〇之組成物,其中該基因靜默效應子包括以下 列之一雜合物之接合鏈結形成的一重組核酸序列:一 130 201009074 SEQ.ID.NO.29 序列、一 SEQ.ID.NO.30 序列、_ SEQ.ID.NO.31 序列、一 SEQ.ID.NO.32 序列、— - SEQ.ro.NO.33 序列、一 SEQ.ID.NO.34 序列、_ • SEQ.ID.NO.35 序列、一 SEQ.ID.NO.36 序列、及其組人。 56. 如請求項40之組成物,其中該基因靜默效應子包括一核 酸序列,其包含一 SEQ.ID.N0.9序列。 57. 如請求項40之組成物,其中該基因靜默效應子包括一重 ® 組核酸序列,其以一 SEQ.ID.NO.27序列或一 SEQ.ID.NO.28序列之一雜合物來形成。 58. 至少一種類胚胎多能性幹細胞經請求項1所述的方法產生。 59·如請求項58所述之類胚胎多能性幹細胞,其中該類胚胎多 能性幹細胞之整體細胞或一部分胞器,供體細胞核轉移技術 (SCNT)應用。 60.如請求項58所述之類胚胎多能性幹細胞’其中該類胚胎多 參 能性幹細胞包^—細胞萃取物’該細胞卒取物包含至少一該類 胚胎多能性幹細胞之胞器或細胞質。 13151. The composition of claim 42, wherein the triad acceptor splice comprises a nucleic acid sequence comprising or homologous to a SEQ. ID. N0.5 sequence. 52. The composition of claim 42, wherein the triad acceptor splice comprises a nucleic acid sequence' comprising 5,-CTGCAG-3, or homologous thereto. 53. The composition of claim 4, wherein the gene silencing effector comprises a nucleic acid sequence' which is homologous or complementary to a sequence of SEQ. ID. N0.3, or both. 54. The composition of claim 4, wherein the gene silencing effector comprises a nucleic acid sequence comprising a SEQ.ID.NO.10 sequence, a SEQ.ID.NO.ll sequence, and a SEQ.ID.NO .12 sequence, and/or a SEQ.ID.MX13 sequence. 55. The composition of claim 4, wherein the gene silencing effector comprises a recombinant nucleic acid sequence formed by a junction of one of the following hybrids: a 130 201009074 SEQ. ID. NO. 29 sequence, a SEQ .ID.NO.30 sequence, _ SEQ.ID.NO.31 sequence, a SEQ.ID.NO.32 sequence, - SEQ.ro.NO.33 sequence, a SEQ.ID.NO.34 sequence, _ • SEQ.ID.NO.35 sequence, a SEQ.ID.NO.36 sequence, and its group. 56. The composition of claim 40, wherein the gene silencing effector comprises a nucleic acid sequence comprising a sequence of SEQ. ID. N0.9. 57. The composition of claim 40, wherein the gene silencing effector comprises a heavy ® set nucleic acid sequence which is a SEQ.ID.NO.27 sequence or a SEQ.ID.NO.28 sequence hybrid form. 58. At least one embryo-like pluripotent stem cell is produced by the method of claim 1. The embryonic pluripotent stem cell of claim 58, wherein the whole cell or a part of the cell of the embryonic pluripotent stem cell is applied by a donor cell nuclear transfer technique (SCNT). 60. The embryonic pluripotent stem cell of claim 58, wherein the embryonic multi-parallel stem cell cell-cell extract comprises at least one organ of the embryonic pluripotent stem cell. Or cytoplasm. 131
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