TW200520771A - Antimicrobial peptides with reduced hemolysis and methods of their use - Google Patents
Antimicrobial peptides with reduced hemolysis and methods of their use Download PDFInfo
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200520771 玖、發明說明: 一、 發明所屬之技讎域 發明範疇 本發明爲一抗菌胜肽,主要的設計特色在於其爲環狀結構且只由9個帶苯環和正電 胺基酸所組成的短胜肽,具有極佳的抗菌能力。相較於其它同樣由苯環和正電胺基酸所 組成的長胜肽而言,此額外緊密的短胜肽顯現了出色的效力及低溶血性。 二、 先前技術 發明背景 由於對傳統抗生素產生抗藥性菌株的出現,促使了新治療試劑的硏究,包括許多動 物性來源的抗菌胜肽。目前這些抗菌胜肽已被發現其在一些宿主與生倶來的防禦機制中 扮演著相當重要的角色,包括植物、昆蟲、兩生類和哺乳動物;並可能具有抗生素的活 性去對抗細菌、真菌,甚至一些病毒。其會與脂質結合(大於百分之九十五),迅速地 分離脂雙層而破壞了膜的完整性。另一方面,也能夠在細菌平形的脂雙層上增加小而短 暫的傳導,使得細胞質膜部分去極化而破壞原本的電位梯度。 此類抗菌胜肽在宿主防禦中的保護功用已在果蠅實驗中被證實;當果蠅被微生物感 染後,若抗菌胜肽的表現量減少,貝(1會大大降低其存活率。而在哺乳動物中,其功能也 可由肺囊胞性纖維症病人和小鼠的缺陷性細菌致死(defective bacterial killing)被證實。 在哺乳動物中所發現的抗菌胜肽可被分類爲富含半胱胺酸的防禦素(α、β防禦素) 和多樣的卡色力西丁(cathelicidin)類。卡色力西丁(Cathelicidin)這類含有一段高度保 留的訊號序列和前區域(卡色林“cathdin”)而具變異性的抗菌序列貝[J位於C端區塊。許多 卡色力西丁(cathelicidins)在帶負電的卡色林(cathelin)區塊和帶正電的C端區塊之間 含有獨特的彈性蛋白酵素切割作用位;此作用位的蛋白質水解反應在牛或豬的嗜中性淋 巴球中都已被觀察到且爲抗菌活性所必須。根據胺基酸成分及構造,此卡色力西丁 (cathelicidin)家族可再分類爲三群··第一群具有親水脂的α-螺旋胜肽,比如LL-37、 200520771 CRAMP、SMAP-29、PMAP-37,、BMAP-27和BMAP-28 ;第二類貝提富含精胺酸細胺酸 或色胺酸胜肽,如Bac5, Bac7, PR-39和吲哚力西丁(indolicidin);第三群則爲含半胱胺酸 胜肽,如波地金(protegrins) 〇 因爲抗菌胜肽通常具低分子量《5 kDa)、廣泛的活性及構成宿主對抗微生物感染防 禦系統重要的一環等特性,因此可作爲設計低分子量抗菌複合物的起始點。再者也因其 兼具有厭水性和帶電性區域,使其有潛力可折疊成親水脂的結構,此特性也關乎其水解 細胞質膜之能力。不過,雖然都具有廣泛的抗菌效力,這些胜肽對於紅血球卻有不同的 溶血活性,此大大的限制了治療的潛力。 這個測試的主要目的是要藉由針對初級及二級結構的修飾,設計出具抗臨床上重要 菌株活性的胜肽並解此瞭解胜肽構造上的一些重要特徵。我們的結果顯示,藉由初級或 二級結構的修改,2女善天然抗菌胜肽的活性或是毒性是可行的。此發明關乎於抗生素, 且被認爲是用途廣泛的新型抗菌胜肽-富含色胺酸序列’兼具抗菌活性和低溶血的特 性。簡而言之,本發明是直接針對廣泛性地抗革蘭氏陽性、陰性菌、原生動物、真菌和 具封套的人類自體免疫缺失病毒而設計的抗生素。 三、發明內容 發明槪述 此呈現的發明主要是針對環狀、短胜肽且同時具有改善的血清相容性和降低的溶血 性而設計;再者,此發明的胜肽也顯現了廣泛的抗菌活性,包括革蘭氏陽、陰性菌和具 多重抗藥性的致病原。此抗菌胜肽含有少於10個胺基酸,序列爲:200520771 (1) Description of the invention: 1. Field of the invention to which the invention belongs The invention is an antibacterial peptide. The main design feature is that it has a cyclic structure and consists of only 9 benzene rings and positively charged amino acids. Short peptide with excellent antibacterial ability. Compared to other long peptides, which also consist of a benzene ring and a positively charged amino acid, this extra tight short peptide exhibits excellent potency and low hemolysis. 2. Prior Art Background of the Invention The emergence of drug-resistant strains against traditional antibiotics has led to the search for new therapeutic agents, including many antimicrobial peptides of animal origin. At present, these antibacterial peptides have been found to play a very important role in the defense mechanisms of some hosts and larvae, including plants, insects, amphibians and mammals; and may have antibiotic activity against bacteria and fungi. Even some viruses. It binds to lipids (greater than ninety-five percent) and rapidly separates the lipid bilayer, destroying membrane integrity. On the other hand, it is also possible to increase small and short-term conduction on the flat lipid bilayer of the bacteria, so that the cell plasma membrane is partially depolarized and the original potential gradient is destroyed. The protective function of such antibacterial peptides in host defense has been proven in fruit fly experiments; when the fruit fly is infected with microorganisms, if the expression of antibacterial peptides decreases, shellfish (1 will greatly reduce its survival rate. In In mammals, its function can also be confirmed by defective bacterial killing of patients with pulmonary cystic fibrosis and mice. The antibacterial peptides found in mammals can be classified as cysteine-rich Defensins (α, β defensins) and a variety of cathelicidin. Cathelicidin contains a highly retained signal sequence and anterior region (cathdin "cathdin" ) And the mutated antibacterial sequence shell [J is located in the C-terminal block. Many cathelicidins contain between the negatively-charged cathlin block and the positively-charged C-terminal block. Unique elastin enzyme cleavage site; proteolytic reaction at this site has been observed in bovine or pig neutrophils and is necessary for antibacterial activity. According to the amino acid composition and structure, this card color Lixidine ( The cathelicidin) family can be further classified into three groups. The first group of α-helical peptides with hydrophilic lipids, such as LL-37, 200520771 CRAMP, SMAP-29, PMAP-37, BMAP-27 and BMAP-28; The second class of beta is rich in arginine or tryptophan peptides, such as Bac5, Bac7, PR-39, and indolicidin; the third group is cysteine-containing peptides, For example, protegrins 〇Because antibacterial peptides usually have low molecular weight "5 kDa", a wide range of activities, and constitute an important part of the host's defense system against microbial infections, it can be used as a starting point for the design of low molecular weight antibacterial point. Furthermore, because it has both hydrophobic and charged regions, it has the potential to fold into a hydrophilic lipid structure. This property is also related to its ability to hydrolyze the cell plasma membrane. However, despite their broad antibacterial efficacy, these peptides have different hemolytic activities against red blood cells, which greatly limits the potential for treatment. The main purpose of this test is to design peptides with activity against clinically important strains and to understand some important characteristics of peptide structure by modifying the primary and secondary structure. Our results show that with the modification of the primary or secondary structure, the activity or toxicity of 2Nvsun's natural antibacterial peptides is feasible. This invention relates to antibiotics, and is considered to be a new type of antimicrobial peptide-tryptophan-rich sequence ', which has a wide range of uses, and has both antibacterial activity and low hemolytic properties. In short, the present invention is an antibiotic designed directly against a broad range of Gram-positive, negative bacteria, protozoa, fungi, and enveloped human autoimmune-deficiency virus. III. SUMMARY OF THE INVENTION The invention described here is mainly designed for cyclic, short peptides, which has both improved serum compatibility and reduced hemolysis. Furthermore, the peptides of this invention also show a wide range of Antibacterial activity, including Gram-positive, negative bacteria, and multidrug-resistant pathogens. This antimicrobial peptide contains less than 10 amino acids, the sequence is:
(AlXlA2)N 其中 A係選自精胺酸(Arg)、離胺酸(Lys)、纈胺酸(Val)及異白胺酸(lie); X係選自色胺酸(Trp)、苯丙胺酸(Phe汲脯胺酸(Pro); A2係選自精胺酸(Arg)、離胺酸(Lys)、纈胺酸(Val)及異白胺酸(lie ;) 200520771 N爲1,2或3, 其構形呈現環狀或直鏈狀。 本發明擁有幾個特點:第一,此胜肽少於10個胺基酸,構形十分緊密,所以可有 效率的穿過細胞膜;第二,本發明所得到的最好胜肽可廣泛地對抗已具有抗性之菌株及 醫藥上重要的真菌。此外,這些胜肽擁有抗內毒素的能力並可與傳統抗生素一起使用。 最重要的是,此發明改善了血清的相容性,而且相較於天然的波地金(protegrins)和吲 哚力西丁(indolicidin)類似物,對於人類的紅血球有十分低的溶血性。 發明之詳細說明 如同在美國專利第 6,303,575、6,180,604、5,821,224、5,547,939、5,459,325 和 5,324,716 號中所描述的富含色胺酸胜肽,所有自然發生的胜肽都擁有超過1〇個胺基酸序列並在 生物體內會被迅速地分解。吲哚力西丁(indolicidin)類似物通常具有 I-L-P-W-K-W-P-W-W-P-W-X的胺基酸序列,X表示1或2個選出的胺基酸(美國專利第 5,547,939號)。這些先前對於富含色胺酸胜肽的描述不同於本篇所描述的發明,我們所 設計的抗菌胜肽是直接針對具有廣泛抗菌性的環狀短胜肽(少於1〇個胺基酸)並具有 改善的選擇性和低溶血性。環化直鏈的抗菌胜肽對於其選擇性和穩定性有幾個優點’ 如··( 1)未折疊的胜肽會因斥水性的作用力而形成沈澱聚積,導致被非特異性的吸收到 正常的哺乳動物細胞和低溶解度。若將未折疊的構形加以束縛並限制其斥水性胺基酸的 暴露就可限制此斥水性的交互作用。再者,這些束縛可增加靜電作用力於一開始胜肽與 帶負電標的膜結合過程所扮演的角色;如此,實際上是增加胜肽對細菌或哺乳動物細胞 的選擇性。(2)由於蛋白質分解酶作用是需要胜肽延伸的結構並露出切割作用位,因此’ 環化短胜肽可能就可藉此堅固且被束縛的結構而限制了其對蛋白質分解酶的感受度。 (3)因爲環化似乎只會影響到其對革蘭氏陰性菌的活性,更多關於這方面的硏究可能 有助於可針對特別菌種溶解的胜肽的設計。此發明的胜肽可以下列的形式表示: (AiXiA2)n A係選自精胺酸(Arginine)、離胺酸(Lysine)、纈胺酸(Val)及異白胺酸(Ik); 200520771 X係選自色胺酸(Tip)、苯丙胺酸(Phe)及脯胺酸(Pro); A2係選自精胺酸(Arg)、離胺酸(Lys)、纈胺酸(Val)及異白胺酸(lie); N爲1、2或3 ; 其構形呈現環狀或直鏈狀。 下列爲此發明的一些抗菌胜肽例子: 環狀-Lys Phe He、 直鏈狀-LysPhelle、 環狀-Arg Phe He、 直鏈狀-Arg Phe lie、 環狀-Arg Phe Va卜 直鏈狀-Arg Phe Val、 環狀,Lys Phe Arg、 直鏈狀-Lys Phe Arg、 環狀-LysTrpVa卜 直鏈狀-Lys Trp Val、 環狀-Lys Trp lie、 直鏈狀-Lys Trp lie、 環狀-Lys Trp Arg、 直觸犬-Lys Trp Arg、 環狀-Arg Trp Va卜 直鏈狀-Arg Trp Va卜 環狀-Lys Trp Arg Arg Trp lie、 直鏈狀-Lys Trp Arg Arg Trp lie、 環狀_ Lys Trp Arg Arg T卬 Va卜 直鏈狀-Lys Trp Arg Arg Trp Val、 環狀-Lys Trp lie Lys Trp Arg、 200520771 直鏈狀-Lys Trp lie Lys Trp Arg、 環狀_Lys Trp Val Lys Trp lie、 直鏈狀_Lys Trp Val Lys Trp lie、 環狀-Lys Trp lie Lys Trp lie、 直鏈狀-Lys Trp lie Lys Trp lie、 環狀-Lys Trp lie Lys Trp lie Lys Trp lie、 直鏈狀-Lys Trp lie Lys Trp lie Lys Trp lie、 環狀-Lys Phe lie Lys Phe lie Lys Phe lie、 直鏈狀-Lys Phe lie Lys Phe lie Lys Phe lie、 環狀-Lys Trp Arg Arg Trp Val Arg Trp lie、 直鏈狀-Lys Trp Arg Arg Trp Val Arg Trp lie、 環狀-lie Trp Arg Val Trp Arg Arg Trp Lys、 直鏈狀-lie Trp Arg Val Tip Arg Arg Trp Lys、 環狀-Lys Phe Arg Arg Phe Val Arg Phe He、 直鏈狀-Lys Phe Arg Arg Phe Val Arg Phe lie、 環狀-Lys Pro Arg Arg Pro Val Arg Pro lie、 直鏈狀-Lys Pro Arg Arg Pro Val Arg Pro lie、 環狀-Lys Trp lie Arg Trp Val Arg Trp lie、及 直鏈狀-Lys Trp lie Arg Trp Val Arg Trp lie o 四、實施方式 實施例 例一:胜肽驗計 '合成 '純化及特性 胜肽相似物及其命名如下列表一所示,各個胺基酸皆由三個字母來替代表示。 200520771 表, 名稱 胺基酸序列 序列編號 Pac-301 C Lys Trp Arg Arg Trp lie SEQIDN〇:1 Pac-301 L Lys Trp Arg Arg Trp lie SEQIDN〇:1 Pac-302 C Lys Trp Arg Arg Trp Val SEQIDNO:2 Pac-302 L Lys Trp Arg Arg Trp Val SEQIDNO:2 Pac-303 C Lys Trp lie Lys Trp Arg SEQIDN〇:3 Pac-303 L Lys Trp lie Lys Trp Arg SEQIDN〇:3 Pac-304 C Lys Trp Val Lys Trp lie SEQIDNO:4 Pac-304 L Lys Trp Val Lys Trp lie SEQ ID N〇:4 Pac-305 C Lys Trp lie Lys Trp lie SEQIDN〇:5 Pac-305 L Lys Trp lie Lys Trp lie SEQ ID N〇:5 Pac-521 C Lys Trp lie Lys Trp lie Lys Trp lie SEQIDN〇:6 Pac-521 L Lys Trp lie Lys Trp lie Lys Trp lie SEQIDNO:6 Pac-522 C Lys Phe lie Lys Phe lie Lys Phe lie SEQIDNO:7 Pac-522L Lys Phe lie Lys Phe lie Lys Phe lie SEQIDN〇:7 Pac-525 C Lys Trp Arg Arg Trp Val Arg Trp lie SEQIDN〇:8 Pac-525 L Lys Trp Arg Arg Trp Val Arg Trp lie SEQ ID NO:8 Pac-526 C He Trp Arg Val Trp Arg Arg Trp Lys SEQ ID N〇:9 Pac-526 L He Trp Arg Val Trp Arg Arg Trp Lys SEQIDN〇:9 Pac-527 C Lys Phe Arg Arg Phe Val Arg Phe lie SEQ ID NO: 10 Pac-527 L Lys Phe Arg Arg Phe Val Arg Phe He SEQ ID NO: 10 Pac-528 C Lys Pro Arg Arg Pro Val Arg Pro lie SEQ ID NO: 11 Pac-528 L Lys Pro Arg Arg Pro Val Arg Pro He SEQ ID NO: 11 Pac-529 C Lys Trp lie Arg Trp Val Arg Trp lie SEQIDNO:12 Pac-529 L Lys Trp lie Arg Trp Val Arg Trp lie SEQ ID NO: 12(AlXlA2) N wherein A is selected from arginine (Arg), lysine (Lys), valine (Val) and isoleucine (lie); X is selected from tryptophan (Trp), amphetamine Acid (Phe), A2 is selected from arginine (Arg), lysine (Lys), valine (Val) and isoleucine (lie;) 200520771 N is 1, 2 Or 3, the configuration is cyclic or linear. The present invention has several characteristics: first, the peptide has less than 10 amino acids, and the configuration is very tight, so it can efficiently pass through the cell membrane; Second, the best peptides obtained by the present invention can widely resist already resistant strains and medically important fungi. In addition, these peptides have the ability to resist endotoxin and can be used with traditional antibiotics. The most important Yes, this invention improves the compatibility of serum, and has very low hemolysis for human red blood cells compared to natural protegrins and indolicidin analogs. Details of the invention Describes tryptophan-rich peptides as described in U.S. Patent Nos. 6,303,575, 6,180,604, 5,821,224, 5,547,939, 5,459,325, and 5,324,716 All naturally occurring peptides have more than 10 amino acid sequences and are rapidly broken down in the body. Indolicidin analogs usually have the amino acid sequence of ILPWKWPWWPWX, X represents 1 or 2 selected amino acids (U.S. Patent No. 5,547,939). These previous descriptions of tryptophan-rich peptides are different from the invention described in this article, and our antibacterial peptides are designed to have broad antibacterial properties directly Cyclic short peptides (less than 10 amino acids) and have improved selectivity and low hemolysis. Cyclized linear antibacterial peptides have several advantages for their selectivity and stability, such as ... (1) Unfolded peptides will form precipitates due to the action of water repellency, resulting in non-specific absorption into normal mammalian cells and low solubility. If the unfolded configuration is restricted and its repellency is limited Exposure to aqueous amino acids can limit this water repellent interaction. Furthermore, these constraints can increase the role of electrostatic forces in the initial binding of peptides to negatively charged membranes; so In fact, it increases the selectivity of peptides to bacterial or mammalian cells. (2) Since the action of proteolytic enzymes requires the extension of the peptide structure and exposes the cleavage site, the cyclized short peptide may be used to The strong and bound structure limits its sensitivity to proteolytic enzymes. (3) Because cyclization seems to only affect its activity against Gram-negative bacteria, more research on this may help The peptide can be designed for the solubilization of specific bacteria. The peptide of this invention can be expressed in the following form: (AiXiA2) n A is selected from Arginine, Lysine, Valine ( Val) and isoleucine (Ik); 200520771 X is selected from tryptophan (Tip), phenylalanine (Phe) and proline (Pro); A2 is selected from arginine (Arg), lysine (Lys), valine (Val) and isoleucine (lie); N is 1, 2 or 3; its configuration is cyclic or linear. The following are some examples of antibacterial peptides of the invention: cyclic-Lys Phe He, linear-LysPhelle, cyclic-Arg Phe He, linear-Arg Phe lie, cyclic-Arg Phe Va, linear-Arg Phe Val, cyclic, Lys Phe Arg, linear-Lys Phe Arg, cyclic-LysTrpVa, linear-Lys Trp Val, cyclic-Lys Trp lie, linear-Lys Trp lie, cyclic-Lys Trp Arg, Straight Dog-Lys Trp Arg, Cyclic-Arg Trp Va Straight Chain-Arg Trp Va Circular-Lys Trp Arg Arg Trp lie, Linear-Lys Trp Arg Arg Trp lie, Cyclic _ Lys Trp Arg Arg T卬 Vabu Linear-Lys Trp Arg Arg Trp Val, Cyclic-Lys Trp lie Lys Trp Arg, 200520771 Linear-Lys Trp lie Lys Trp Arg, Cyclic_Lys Trp Val Lys Trp lie, Linear_Lys Trp Val Lys Trp lie, cyclic-Lys Trp lie Lys Trp lie, linear-Lys Trp lie Lys Trp lie, cyclic-Lys Trp lie Lys Trp lie Lys Trp lie, linear-Lys Trp lie Lys Trp lie Lys Trp lie, cyclic-Lys Phe lie Lys Phe lie Lys Phe lie, linear-Lys Phe lie Lys Phe lie Lys Phe lie, cyclic-Lys Trp Arg Arg Trp Val Arg Trp lie, linear-Lys Trp Arg Arg Trp Val Arg Trp lie, cyclic-lie Trp Arg Val Trp Arg Arg Trp Lys, linear-lie Trp Arg Val Tip Arg Arg Trp Lys, cyclic-Lys Phe Arg Arg Phe Val Arg Phe He, linear-Lys Phe Arg Arg Phe Val Arg Phe lie, cyclic-Lys Pro Arg Arg Pro Val Arg Pro lie, linear-Lys Pro Arg Arg Pro Val Arg Pro lie, Cyclic-Lys Trp lie Arg Trp Val Arg Trp lie, and linear-Lys Trp lie Arg Trp Val Arg Trp lie IV. Implementation Examples Example 1: Peptide Verification 'Synthesis' Purification and characteristics of peptides are similar The substances and their names are shown in Table 1 below. Each amino acid is represented by three letters instead. 200520771 Table, Name Amino Acid Sequence Number Pac-301 C Lys Trp Arg Arg Trp lie SEQIDN〇: 1 Pac-301 L Lys Trp Arg Arg Trp lie SEQIDN〇: 1 Pac-302 C Lys Trp Arg Arg Trp Val SEQIDNO: 2 Pac-302 L Lys Trp Arg Arg Trp Val SEQIDNO: 2 Pac-303 C Lys Trp lie Lys Trp Arg SEQIDN〇: 3 Pac-303 L Lys Trp lie Lys Trp Arg SEQIDN〇: 3 Pac-304 C Lys Trp Val Lys Trp lie SEQIDNO: 4 Pac-304 L Lys Trp Val Lys Trp lie SEQ ID NO: 4 Pac-305 C Lys Trp lie Lys Trp lie SEQIDN〇: 5 Pac-305 L Lys Trp lie Lys Trp lie SEQ ID N〇: 5 Pac-521 C Lys Trp lie Lys Trp lie Lys Trp lie SEQIDN〇: 6 Pac-521 L Lys Trp lie Lys Trp lie Lys Trp lie SEQIDNO: 6 Pac-522 C Lys Phe lie Lys Phe lie Lys Phe lie SEQIDNO: 7 Pac-522L Lys Phe lie Lys Phe lie Lys Phe lie SEQIDN〇: 7 Pac-525 C Lys Trp Arg Arg Trp Val Arg Trp lie SEQIDN〇: 8 Pac-525 L Lys Trp Arg Arg Trp Val Arg Trp lie SEQ ID NO: 8 Pac-526 C He Trp Arg Val Trp Arg Arg Trp Lys SEQ ID NO: 9 Pac-526 L He Trp Arg Val Trp Arg Arg Trp Lys SEQ ID NO: 9 Pac-527 CL ys Phe Arg Arg Phe Val Arg Phe lie SEQ ID NO: 10 Pac-527 L Lys Phe Arg Arg Phe Val Arg Phe He SEQ ID NO: 10 Pac-528 C Lys Pro Arg Arg Pro Val Arg Pro lie SEQ ID NO: 11 Pac-528 L Lys Pro Arg Arg Pro Val Arg Pro He SEQ ID NO: 11 Pac-529 C Lys Trp lie Arg Trp Val Arg Trp lie SEQIDNO: 12 Pac-529 L Lys Trp lie Arg Trp Val Arg Trp lie SEQ ID NO : 12
C:環狀;L:直鏈狀 10 200520771 所有的直鏈狀胜肽都是以固態合成法合成,使用標準的Fmoc : (N-(9-芴基)甲氧羰 基)化學合成在PAL樹脂(5- (4-Fmoc-胺甲基-3,5-二甲氧苯氧)-戊酸-甲基苯氫胺樹脂) 上;而這些樹脂上的Fmoc保護基則以20%的六氫吡陡/二甲基甲醯胺(piperidine/DMF) 移除,反應時間大約1〜1.5小時,之後並以水和第三酮測試(ninhydrin test)確定。接 下來加入95%的三氟醋酸(TFA)混合1〜1.5小時,由樹脂上切下此未加工的胜肽;再 以逆相高壓液態色層分析純化。在此所使用的逆相高壓液態色層分析是半製化 (semi-preparative) C18逆相管柱。純化的移動相則是以不同比例的乙腈(acetonitrile) 和水混合(程序如表一);波長225和280奈米偵測;流速4毫升/分鐘。所得的主要胜 肽產物再以快速原子撞擊質譜分析(FAB-MS ; fast atom bombard mass spectrophotometry ) 去決定分子量。每個胜肽的純度都經過逆相高壓液態色層分析管柱確定。 例二:體外胜麵 一般而言’體外胜肽抗菌活性可用標準的臨床實驗室標準國家委員會(NCCLS)細 菌抑制分析法或最小抑制濃度(MIC)測試。所謂最小抑制濃度是指抑制或減少測試生 物體生長所需的最小胜肽濃度。以最小抑制濃度分析法測試的生物體列如表二:C: cyclic; L: linear 10 200520771 All linear peptides are synthesized by solid-state synthesis, using standard Fmoc: (N- (9-fluorenyl) methoxycarbonyl) chemical synthesis in PAL resin (5- (4-Fmoc-aminomethyl-3,5-dimethoxyphenoxy) -valeric acid-methylaniline resin); and the Fmoc protecting group on these resins is 20% hexahydro Pyridine / DMF was removed and the reaction time was about 1 to 1.5 hours, after which it was determined with water and a ninhydrin test. Next, 95% trifluoroacetic acid (TFA) was added and mixed for 1 to 1.5 hours, and the unprocessed peptide was cut from the resin; and then purified by reverse-phase high-pressure liquid chromatography. The reverse-phase high-pressure liquid chromatography used here is a semi-preparative C18 reverse-phase column. The purified mobile phase was mixed with acetonitrile and water in different ratios (the procedure is shown in Table 1); the wavelength was detected at 225 and 280 nm; the flow rate was 4 ml / min. The obtained main peptide product was then determined by fast atom bombard mass spectrophotometry (FAB-MS) to determine the molecular weight. The purity of each peptide was determined by a reverse-phase high-pressure liquid chromatography column. Example 2: In vitro victory surface In general, the antibacterial activity of in vitro peptides can be tested using standard clinical laboratory standard National Committee (NCCLS) bacterial inhibition assays or minimum inhibitory concentration (MIC). The so-called minimum inhibitory concentration refers to the minimum peptide concentration required to inhibit or reduce the growth of a test organism. The organisms tested by the minimum inhibitory concentration analysis method are shown in Table 2:
11 200520771 用於最小抑制濃度(MIC)測定之測試菌株 生物體來源 祐萆揚菌(BacUlussubstiUs ) {Staphylococcusaureus^) 轰皮葡萄琢菌 i Staphylococcus epidermidis 金黃葡萄球菌(5体如/〇%>〇^) 芽胞桿菌{Bacilluspumilus、 臘狀桿菌(及c/伽⑽哪) {Pseudomonasaeruginosa ) {Staphylococcusaureus ) 大腸桿菌(五) ATCC 6633 ATCC 9144 ATCC 12228 ATCC 29737 ATCC 14884 ATCC 11778 ATCC 27853 ATCC 29213 ATCC 2592211 200520771 BacUlussubstiUs (Staphylococcusaureus ^) from Staphylococcus aureus i Staphylococcus epidermidis (5 bodies such as / 〇% > 〇 ^) ) Bacillus {Bacilluspumilus, Ceratocystis (and c / Galana) {Pseudomonasaeruginosa) {Staphylococcusaureus) E. coli (5) ATCC 6633 ATCC 9144 ATCC 12228 ATCC 29737 ATCC 14884 ATCC 11778 ATCC 27853 ATCC 29213 ATCC 25922
簡單的說,就是將隔夜培養的菌液以米勒希頓(Meuller-Hinton)生長培養液稀釋成 大約含有105個菌落的接種體;胜肽也進行兩次序列稀釋,再加入稀釋過的菌液當中。 37°C、18小時培養後,分析其混濁度;每個胜肽的最小抑制濃度分別在不同時刻測量了 三次,並求得平均値,如表三、第1圖及第2圖。根據這些結果,我們發現Pac521-530 對於革蘭氏陰、陽性菌具有最大的抗菌活性。再者,pac-521〜530也較Pac-301〜310顯現 φ 較大的抗菌活性。 12 200520771 表三 合成胜肽對於大腸桿菌及金黃葡萄球菌之最小抑制濃度値(μ§Μ) 名稱 大腸桿菌 金黃葡萄球菌Pac_301 C >64 Pac-301 L >64 16 8 Pac-303 C >64 >64 Pac-303 L 24 16 Pac-305 C >64 >64 Pac-305 L 24 16 Pac-521 C 64 64 Pac-521 L 8 16 Pac-522 C 64 64 Pac-522 L 8 4 Pac-525 C 64 64 Pac-525 L 2 4 Pac-526 C 64 64 Pac-526L 4 4 Pac-527 C 64 64 Pac-527 L 4 4 Pac-528 C 64 64 Pac-528 L 2 4 Pac-529 C 64 64 Pac-529 L 8 4 C:環狀;L:直鏈狀To put it simply, the bacterial solution cultured overnight was diluted with Meuller-Hinton growth medium to an inoculum containing approximately 105 colonies; the peptide was also serially diluted twice, and the diluted bacteria were added. In the liquid. After 18 hours incubation at 37 ° C, the turbidity was analyzed; the minimum inhibitory concentration of each peptide was measured three times at different times, and the average radon was calculated, as shown in Table III, Figure 1 and Figure 2. Based on these results, we found that Pac521-530 has the largest antibacterial activity against Gram-negative and positive bacteria. Furthermore, pac-521 ~ 530 also exhibited a larger φ antibacterial activity than Pac-301 ~ 310. 12 200520771 Table 3. Minimum inhibitory concentrations of synthetic peptides on E. coli and S. aureus (μ§M) Name E. coli S. aureus Pac_301 C > 64 Pac-301 L > 64 16 8 Pac-303 C > 64 > 64 Pac-303 L 24 16 Pac-305 C > 64 > 64 Pac-305 L 24 16 Pac-521 C 64 64 Pac-521 L 8 16 Pac-522 C 64 64 Pac-522 L 8 4 Pac-525 C 64 64 Pac-525 L 2 4 Pac-526 C 64 64 Pac-526L 4 4 Pac-527 C 64 64 Pac-527 L 4 4 Pac-528 C 64 64 Pac-528 L 2 4 Pac-529 C 64 64 Pac-529 L 8 4 C: cyclic; L: linear
13 200520771 表四 生物體 合成胜肽之最小抑制濃度値(MIC "g/ml) 無磷酸緩衝液 IX磷酸緩衝液 Pac-525 L Pac-527 L Pac-525 L Pac-527 L 枯草桿菌 4 4 4 2 表皮葡萄球菌 2 2 2 4 金黃葡萄球菌 4 4 8 4 芽胞桿菌 4 2 8 4 臘狀桿菌 2 4 8 4 綠膿桿菌 2 4 4 8 大腸桿菌 2 4 8 8 例三:膜穿透度分析 胜肽的外膜穿透度是由Ι-iV-苯萘胺(NPN)的吸收測試來決定。完整的大腸桿菌細胞 NPN在液態環境中顯示了弱的螢光吸收;而在斥水性的環境則有強的吸收値,因此表示 NPN爲斥水性,可用來直接測量外膜穿透度的程度。在一般正常的情況下,大腸桿菌吸 收少量或甚至沒有吸收NPN ;在一些具有膜穿透力的化合物存在的情況下(乙二胺四乙 酸,多粘菌素B ( polymyxin B ),新黴素或是抗菌胜),NPN會部分地穿透到細菌的外膜 造成螢光吸收値的增加。實驗步驟簡述如下··將1毫升隔夜培養的菌液加入50毫升的 培養液中,37度震盪培養至OD600等於0.4〜0.6,3500rpm、10分鐘離下細胞。用緩衝液 沖洗並懸浮所離心下來的細胞至ODf 〇·5。吸取1毫升至透明小試管(cuvette)中,測 量2〜5秒。加入0.5毫莫耳的NPN 20微升,混合均勻後再測量2〜5秒。再加入100倍 的抗生素10微升,混合均勻,測量至達到最大値爲止(μ5分鐘)。所以,螢光的吸收 値是隨著胜肽濃度而改變,而ΝΡΝ的吸收達到最大增加的百分之五十所需的胜肽濃度 則定義爲Ρ5。°的確’實驗結果顯示,在ΝΡΝ吸收測試下,所有的胜肽都具有與膜結合 14 200520771 的能力,數據如表五和第2圖。 表五 可以通透大腸桿菌外膜並促進NPN攝入之能力 _ _ __ _ _ 胜 p5〇 te/ml) Pac 301 L 8 Pac 305 L 16 Pac 309 L 8 Pac 521 L 2 Pac 525 L 2 Pac 529 L 413 200520771 Table 4. Minimum inhibitory concentrations of peptides synthesized by organisms (MIC " g / ml) Phosphate-free buffer IX Phosphate buffer Pac-525 L Pac-527 L Pac-525 L Pac-527 L Bacillus subtilis 4 4 4 2 Staphylococcus epidermidis 2 2 2 4 Staphylococcus aureus 4 4 8 4 Bacillus 4 2 8 4 Lactobacillus 2 4 8 4 Pseudomonas aeruginosa 2 4 4 8 Escherichia coli 2 4 8 8 Example 3: Analysis of membrane penetration The outer membrane penetration of the peptide was determined by the absorption test of 1-iV-bennaphthylamine (NPN). Intact E. coli cells NPN shows weak fluorescence absorption in a liquid environment, and strong absorption in a water-repellent environment, so it indicates that NPN is water-repellent and can be used to directly measure the degree of outer membrane penetration. Under normal circumstances, E. coli absorbs little or even no NPN; in the presence of some membrane penetrating compounds (ethylenediaminetetraacetic acid, polymyxin B), neomycin Or antibacterial), NPN will partially penetrate the outer membrane of bacteria and increase the fluorescence absorption. The experimental procedure is briefly described as follows: 1 ml of the overnight bacterial culture was added to 50 ml of the culture medium, and cultured at 37 ° C with shaking to an OD600 equal to 0.4 to 0.6, and the cells were detached at 3500 rpm for 10 minutes. Rinse and resuspend the centrifuged cells to ODf 0.5 with buffer. Pipette 1 ml into a clear cuvette and measure for 2 to 5 seconds. Add 0.5 millimoles of NPN 20 microliters, mix well and measure for 2 ~ 5 seconds. Then add 10 microliters of 100 times antibiotics, mix well, and measure until the maximum value is reached (5 minutes). Therefore, the fluorescence absorption 値 changes with the concentration of peptides, and the concentration of peptides required to reach 50% of the maximum increase in NPN is defined as P5. ° Indeed, the experimental results show that all peptides have the ability to bind to the membrane under the NPN absorption test. The data are shown in Table 5 and Figure 2. Table 5: Ability to penetrate the outer membrane of E. coli and promote NPN uptake _ _ __ _ _ win p50te / ml) Pac 301 L 8 Pac 305 L 16 Pac 309 L 8 Pac 521 L 2 Pac 525 L 2 Pac 529 L 4
例四··色胺酵簑境的特徵 由於色胺酸對於周圍環境極化程度的敏感性,常被用來作爲測量極化或結合的硏 究。我們利用LS-55螢光光譜計(spectrofluorimeter) [Perkin-Elmei:公司]在25它5毫米石 英試管(quartzcell)情況下完成了波長300和450奈米的螢光散射光譜;激發波長設定 爲280奈米;散射和激發閘寬皆爲5奈米。在磷酸緩衝液的情況下,這一系列的抗菌胜 肽在波長357奈米下有最大的散射値;而在有硫酸十二酯鈉(SDS)存在下,最大散射 波長則往藍位移(blue shift)移動了 8奈米,強度也隨之增加。這個結果顯示出色胺酸 的支鏈移向更斥水性的環境中,結果如第3圖所示。 例五··由旋光分散光譜(CD)所偵獅tf的胜肽二級結構 CD光譜由經J-10-炭酮擴酸(camphorsulfonic acid)校正後的AVIV 62DS旋光光譜儀 (spectropolarometer)獲得;使用光徑1毫米的透明小試管。實驗條件爲在pH値7·2、 濃度10毫莫耳的磷酸鈉緩衝液下,胜肽濃度3〇微莫耳。〇·5奈米步長(stepsize)和平均 時間一秒的情況下收取波長190-260奈米的遠紫外線光譜。在磷脂質不存在的情況下, Pac-301〜310和Pac-521〜530並無顯現規則結構的特徵(表六);然而在SDS加入後,結 15 200520771 構則被誘導出來(第4圖)。 表六 胜肽 在磷酸緩衝液之結構 在硫酸十二酯鈉之結構 Pac-301 C 無規則結構 無規則結構 Pac-301 L 無規則結構 少許規則結構 Pac-305 C 無規則結構 無規則結構 Pac-305 L 無規則結構 少許規則結構 Pac-522 C 無規則結構 無規則結構 Pac-522 L 無規則結構 少許規則結構 Pac-525 C 無規則結構 無規則結構 Pac-525 L 無規則結構 少許規則結構 例六:酿球溶解 利用人類紅血球細胞測試Pac-521〜530的血球溶解性。將帶有乙二胺四乙酸的紅血 球以磷酸鹽緩衝液(PBSM800& 10分鐘)潤洗三次,最後懸浮在PBS中;稀釋成10%後 以每管50微升的體積分裝。然後將溶解於PBS緩衝液的胜肽加入,37°c培養一小時(最 後紅血球濃度爲5%v/v ); 800^離心10分鐘。將前處理過的紅血球和不同濃度的胜肽培 · 養而分別得到其溶血性百分比。結果顯示Pac_525相較於其它抗菌胜肽而言對於紅血球 有明顯較低的溶血性(表七和第5圖)。 表七 _ 胜肽 在5μ2/ιη1濃度下之在5(^g/ml濃度下之在50(^g/ml濃度下 溶胞百分比 溶胞百分比 之溶胞百分比 Pac-301 L 0.85 6.8 14 Pac-305 L 0.74 7.2 15 Pac-524L 0.82 7.3 15 Pac-525 L 0.81 7.2 14 16 200520771 【圖式簡單說明】 第1圖爲以Pac-525 (實心圓)和Pac-524 (空心圓)處理過的存活曲線圖(A)枯早桿囷 (Bacillus. Substilis) ATCC6633; (Staphylococcus aureus) ATCC9144; (C) 大腸桿菌(五) ATCC25922;(D)綠膿桿菌(户娜必聊露跑聊>7·) ATCC27853。 第2圖爲以NPN攝入分析測量Pac-525誘導外膜通透度((^g/ml:實心方形;1μ2/ιι± 空心圓;2pg/ml:空心方形;3pg/m]:空心三角形)。 第3圖爲利用色胺酸的螢光吸光記錄由硫酸十二酯鈉誘導Pac-525環境改變的情形。 第4圖爲(A) Pac-525和(B) Pac-526在磷酸鹽緩衝液(空心圓)或l〇mM SDS (實心 圓)的CD光譜。 第5圖顯現了胜肽對人類紅血球細胞只有非常低的溶血性(實心圓:蜂毒肽 (melittin);空心圓:Pac-525 ;實心三角形·· Pac-527)。 200520771 序列表 <110>申請人名稱曾秀如及程家維 <120>低溶血性之抗菌胜肽及其使用方法 <160>12Example 4: Characteristics of tryptophan environment Due to the sensitivity of tryptophan to the degree of polarization of the surrounding environment, it is often used as a study to measure polarization or binding. We used the LS-55 spectrofluorimeter [Perkin-Elmei: company] to complete fluorescence scattering spectra at 300 and 450 nanometers in 25 5mm quartz cells; the excitation wavelength was set to 280 Nanometers; both the scattering and excitation gate widths are 5 nanometers. In the case of phosphate buffer, this series of antimicrobial peptides has the largest scattering at a wavelength of 357 nm; while in the presence of sodium dodecyl sulfate (SDS), the maximum scattering wavelength shifts to blue (blue shifted) By 8 nanometers, the intensity also increased. This result shows that the branches of the excellent amino acid are moved to a more water-repellent environment, and the result is shown in FIG. 3. Example 5 · The secondary structure CD spectrum of the peptide of the lion tf detected by optical dispersion spectrum (CD) was obtained from an AVIV 62DS spectropolarometer after correction by J-10-carbonphorsulfonic acid; use Transparent small test tube with a light diameter of 1 mm. The experimental conditions were 30 micromolar of peptide concentration in a sodium phosphate buffer at a pH of 7.2 and a concentration of 10 millimolar. The far-ultraviolet spectrum with a wavelength of 190-260 nm was collected with a step size of 0.5 nm and an average time of one second. In the absence of phospholipids, Pac-301 ~ 310 and Pac-521 ~ 530 did not show the characteristics of regular structure (Table 6); however, after the SDS was added, the structure 15 200520771 was induced (Figure 4) ). Table hexapeptide structure in phosphate buffer structure in sodium dodecyl sulfate Pac-301 C random structure Pac-301 L random structure a little regular structure Pac-305 C random structure irregular structure Pac- 305 L Irregular structure Pac-522 C Irregular structure Pac-522 C Irregular structure Pac-522 C Irregular structure Pac-525 C Irregular structure Pac-525 L Irregular structure Little regular structure Example 6 : Fermented cell lysate Pac-521 ~ 530 is used to test the blood cell solubility of human red blood cells. Erythrocytes with ethylenediaminetetraacetic acid were rinsed three times with phosphate buffered saline (PBSM800 & 10 minutes) and finally suspended in PBS; diluted to 10% and aliquoted in 50 microliter volumes per tube. Then the peptide dissolved in PBS buffer was added, and cultured at 37 ° C for one hour (final red blood cell concentration was 5% v / v); centrifuged at 800 ^ for 10 minutes. Pretreated red blood cells and peptides of different concentrations were cultured to obtain their hemolytic percentages. The results showed that Pac_525 had significantly lower hemolysis for red blood cells than other antimicrobial peptides (Table 7 and Figure 5). Table 7_ Peptide lysate at 5 μ2 / ιη1 concentration at 5 μg / ml concentration at 50 μg / ml concentration at 50 μg / ml concentration lysis percentage Pac-301 L 0.85 6.8 14 Pac- 305 L 0.74 7.2 15 Pac-524L 0.82 7.3 15 Pac-525 L 0.81 7.2 14 16 200520771 [Simplified illustration of the figure] Figure 1 shows the survival after treatment with Pac-525 (filled circle) and Pac-524 (open circle) Graph (A) Bacillus. Substilis ATCC6633; (Staphylococcus aureus) ATCC9144; (C) E. coli (5) ATCC25922; (D) Pseudomonas aeruginosa ) ATCC27853. Figure 2 is the measurement of Pac-525-induced adventitia permeability using NPN uptake analysis ((^ g / ml: solid square; 1μ2 / ιι ± hollow circle; 2pg / ml: hollow square; 3pg / m) (Open triangle). Figure 3 shows the use of tryptophan fluorescent light absorption to record the environmental changes induced by dodecyl sulfate sodium Pac-525. Figure 4 shows (A) Pac-525 and (B) Pac-526 CD spectrum in phosphate buffer (open circles) or 10 mM SDS (filled circles). Figure 5 shows that peptides have very low hemolysis to human red blood cells (filled circles: melittin ( melittin); hollow circle: Pac-525; solid triangle (Pac-527). 200520771 Sequence Listing < 110 > Applicant Names Zeng Xiuru & Cheng Jiawei < 120 > Low Hemolytic Antibiotic Peptide and Method of Use < 160 >; 12
<210〉1 <211>6 <212>PRT <213〉人工序列 <220〉 <223>直鏈狀或環狀構形胜肽,具有抗菌活性 <400>1< 210> 1 < 211 > 6 < 212 > PRT < 213> Artificial sequence < 220> < 223 > A linear or cyclic configuration peptide with antibacterial activity < 400 > 1
Lys Trp Arg Arg Trp lie 1 5 <210>2 <211>6 <212>PRT <213>人工序列 <220> <223〉直鏈狀或環狀構形胜肽,具有抗菌活性 18 200520771 <400>2Lys Trp Arg Arg Trp lie 1 5 < 210 > 2 < 211 > 6 < 212 > PRT < 213 > Artificial sequence < 220 > < 223> Linear or cyclic configuration peptide with antibacterial activity 18 200520771 < 400 > 2
Lys Trp Arg Arg Trp Val 1 5 <210>3 <211>6 <212>PRT <213〉人工序列Lys Trp Arg Arg Trp Val 1 5 < 210 > 3 < 211 > 6 < 212 > PRT < 213> Artificial sequence
<220> <223〉直鏈狀或環狀構形胜肽,具有抗菌活性 <400>3< 220 > < 223> A linear or cyclic configuration peptide having antibacterial activity < 400 > 3
Lys Trp lie Lys Trp Arg 1 5Lys Trp lie Lys Trp Arg 1 5
<210>4 <211>6 <212>PRT <213〉人工序列 <220> <223〉直鏈狀或環狀構形胜肽,具有抗菌活性 <400>4< 210 > 4 < 211 > 6 < 212 > PRT < 213> Artificial sequence < 220 > < 223> Linear or cyclic configuration peptide with antibacterial activity < 400 > 4
Lys Trp Val Lys Trp lie 1 5 <210>5 19 200520771 <211>6 <212>PRT <213〉人工序列 <220〉 <223〉直鏈狀或環狀構形胜肽,具有抗菌活性 <400>5Lys Trp Val Lys Trp lie 1 5 < 210 > 5 19 200520771 < 211 > 6 < 212 > PRT < 213> Artificial sequence < 220> < 223> Linear or cyclic configuration peptide having Antibacterial activity < 400 > 5
Lys Trp lie Lys Trp lie 1 5 <210>6 <211>9 <212>PRT <213>人工序列 <220〉Lys Trp lie Lys Trp lie 1 5 < 210 > 6 < 211 > 9 < 212 > PRT < 213 > artificial sequence < 220>
<223>直鏈狀或環狀構形胜肽,具有抗菌活性 <400>6< 223 > A linear or cyclic configuration peptide with antibacterial activity < 400 > 6
Lys Trp lie Lys Trp lie Lys Trp lie 1 5 <210>7 <211>9 <212>PRT <213>人工序列 20 <220> 200520771 <223>直鏈狀或環狀構形胜肽,具有抗菌活性 <400>7Lys Trp lie Lys Trp lie Lys Trp lie 1 5 < 210 > 7 < 211 > 9 < 212 > PRT < 213 > Artificial Sequence 20 < 220 > 200520771 < 223 > Linear or circular configuration wins Peptide with antibacterial activity < 400 > 7
Lys Phe lie Lys Phe lie Lys Phe lie 1 5Lys Phe lie Lys Phe lie Lys Phe lie 1 5
<210>8 <211>9 <212>PRT <213〉人工序列 <220〉 <223〉直鏈狀或環狀構形胜肽,具有抗菌活性 <400>8< 210 > 8 < 211 > 9 < 212 > PRT < 213〉 artificial sequence < 220> < 223> linear or cyclic configuration peptide with antibacterial activity < 400 > 8
Lys Trp Arg Arg Trp Val Arg Trp lie 1 5Lys Trp Arg Arg Trp Val Arg Trp lie 1 5
<210>9 <211>9 <212>PRT <213〉人工序列 <220> <223>直鏈狀或環狀構形胜肽,具有抗菌活性 <400>9 lie Trp Arg Val Trp Arg Arg Trp Lys 21 200520771 <210〉10 <211>9 <212>PRT <213认工序列 <220〉< 210 > 9 < 211 > 9 < 212 > PRT < 213> Artificial sequence < 220 > < 223 > Linear or cyclic configuration peptide with antibacterial activity < 400 > 9 lie Trp Arg Val Trp Arg Arg Trp Lys 21 200520771 < 210〉 10 < 211 > 9 < 212 > PRT < 213 Recognition Sequence < 220>
<223〉直鏈狀或環狀構形胜肽,具有抗菌活性 <400>10< 223> A linear or cyclic configuration peptide having antibacterial activity < 400 > 10
Lys Phe Arg Arg Phe Val Arg Phe lie 1 5Lys Phe Arg Arg Phe Val Arg Phe lie 1 5
<210>11 <211>9 <212〉PRT <213〉人工序列 <220> <223>直鏈狀或環狀構形胜肽,具有抗菌活性 <400>11< 210 > 11 < 211 > 9 < 212> PRT < 213> Artificial sequence < 220 > < 223 > A linear or cyclic configuration peptide with antibacterial activity < 400 > 11
Lys Pro Arg Arg Pro Val Arg Pro lie 1 5 <210>12 22 200520771 <211>9 <212>PRT <213>人工序列 <220〉 <223>直鏈狀或環狀構形胜肽,具有抗菌活性 <400>12Lys Pro Arg Arg Pro Val Arg Pro lie 1 5 < 210 > 12 22 200520771 < 211 > 9 < 212 > PRT < 213 > Artificial sequence < 220> < 223 > Linear or circular configuration wins Peptide with antibacterial activity < 400 > 12
Lys Trp lie Arg Trp Val Arg Trp lie 1 5Lys Trp lie Arg Trp Val Arg Trp lie 1 5
23twenty three
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CN109535226A (en) * | 2015-08-17 | 2019-03-29 | 杨立威 | System for evaluating antibacterial power of antibacterial peptide and using method thereof |
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