TW200307040A - Split-hybrid system - Google Patents

Split-hybrid system Download PDF

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TW200307040A
TW200307040A TW92114071A TW92114071A TW200307040A TW 200307040 A TW200307040 A TW 200307040A TW 92114071 A TW92114071 A TW 92114071A TW 92114071 A TW92114071 A TW 92114071A TW 200307040 A TW200307040 A TW 200307040A
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Taiwan
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polypeptide chain
promoter
protein
bait
prey
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TW92114071A
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Chinese (zh)
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Hsiu-Ming Shih
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Nat Health Research Institutes
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Abstract

A split-hybrid system that contains a nucleic acid including a promoter, a transcriptional regulatory sequence operably linked to the promoter and having a protein-binding domain, and a reporter gene operably linked to the promoter; a first recombinant polypeptide including a DNA-binding domain that binds to the protein- binding domain and a bait polypeptide; and a second recombinant polypeptide including a transcriptional repression domain and a prey polypeptide that interacts with the bait polypeptide. Interaction between the bait and prey polypeptides represses the expression of the reporter gene, and disruption of the interaction between the bait and prey polypeptides activates the expression of the reporter gene.

Description

200307040 玖、發明說明: 【發明所屬之技術領域^1 本發明是關於一插八 擾蛋白質間交互作用& 合系統,可用來辨認出可干 用的化合物。 【先前技術】 蛋白質間的交互作用 -環,這些交互作用在細十疋每-個細胞反應裡重要的 八你田“略μ & 外(例如配位子與受器間的結 合作用、細胞間黏附、抗原 知知睑允r也丨1 π丄 可識以及病毒與宿主間的辨識) 和細胞内(例如形成參與作 你田 綠嘴从η /、5唬傳遞的蛋白質複合體、轉錄 作用、轉澤作用及DNA的恪、、 s ^ ^ ^ ^ ^ ^ U補與複製)都會發生。疾病發 展過程通常會涉及不正常 ^ ^ , 、蛋白質間交互作用。這些蛋白 質間父互作用就成為極具潛 胃 做為治療疾病的標的。 【發明内容】 統,其包含有(1 ) 啟動子相連且可與 調節序列,及與啟 本發明之-態樣是-種分裂雜合系 一段核酸’其中包括:一個啟動子,與 其作用之一段含有蛋白質接合區的轉錄 動子相連且與其作用之一個報導基因;(2 )第一段重組多 肽鏈’丼中包含一個可和蛋白質接合區相結合之DNA結合 區’與一段「餌」多肽鏈(a bait p〇lypeptide) ; ( 3 ) 一第二 段重組多肽鏈’其中包含一個轉錄抑制區與一段「獵物」 多肤鍵(a Prey polypeptide),該「獵物」多肽鏈係可和「餌」 多肤鍵相互結合。「飼」多肤鍵與「蠟物」多肽鏈之間有 200307040 父互作用就 物」多肽鏈 現。 曰抑制報導基因的表現,「餌」多肽鏈與「 間的夺1 又互作用被干擾時就會活化報導基因的表 邦另做說日日 或增加。 D月,否則本發明中「干擾」一詞 舉例來# , Γ Γ ' 的交互作田、〇 餌」多肽鏈與「獵物」多肽鏈間 阳被干播 M at Γ ^ 間的交5 A 」係私餌」多肽鏈與「獵物」多肽鏈 「作用受到抑制或增加。 啟動子 日 可以是έ 」是指一段能夠啟動轉錄作用之核酸序列。 子)或 動子(例如:胸腺嘧啶激酶〔ΤΚ〕啟動 和羅氏却 動子(例如··巨細胞病毒〔CMV〕啟動子 —Α瘤病毒〔RSV〕啟動子)。200307040 (1) Description of the invention: [Technical field to which the invention belongs ^ 1 The present invention relates to a plug-in interference protein interaction & synthesizing system, which can be used to identify dry compounds. [Prior technology] Interactions between proteins-loops, these interactions are important in the reaction of each cell of Hachijo "slightly & externally (such as the interaction between ligands and receptors, cells Intercellular adhesion, antigen recognition, eyebrow allowance, 1 π 丄 recognition, and virus-to-host identification) and intracellular (such as the formation of protein complexes involved in the transmission of your field green mouth from η / 5, transcription , Translocation and DNA, s ^ ^ ^ ^ ^ ^ U complement and replication) will occur. The disease development process usually involves abnormal ^ ^,, protein-protein interactions. The parent-protein interaction between these proteins becomes It has a latent stomach as a target for treating diseases. [Summary of the Invention] A system comprising (1) a promoter linked to a regulatory sequence, and a nucleic acid that is a kind of split-hybrid system of the present invention. 'It includes: a promoter, a reporter gene linked to and acting on a segment of a protein containing a protein junction region; and (2) the first segment of a recombinant polypeptide chain' 丼 contains a protein DNA binding region 'combined with a "bait polipeptide"; (3) a second recombinant polypeptide chain' which contains a transcriptional repression region and a "prey" polypeptide bond (a Prey polypeptide), the "prey" polypeptide chain can be combined with the "bait" polypeptide bond. There is a 200307040 parent interaction between the "feed" polypeptide bond and the "wax" polypeptide chain. Inhibiting the performance of the reporter gene, when the interaction between the "bait" polypeptide chain and the "deprivation 1" is disturbed, the cousin of the reporter gene will be activated. The month or day will increase. D month, otherwise "interference" in the present invention An example of the term is #, Γ Γ '' s interaction field, bait "polypeptide chain and" prey "peptide chain interspersed with 5 A between" at private bait "polypeptide chain and" prey "polypeptide A strand "inhibits or increases its effect. The promoter day can be sloppy" refers to a nucleic acid sequence capable of initiating transcription. Or) (eg: thymidine kinase [TK] promoter and Roche but (eg, cytomegalovirus [CMV] promoter-A tumor virus [RSV] promoter).

Jinked轉。錄調節序列與啟動子「相連^與其作用(。叫㈣ ,,.,t〇)',是指一段核酸序列,其能夠調節(例如:加 子的活動。「蛋白質接合區(protein-binding domain) b 4b 疋才曰一段能與蛋白質結合的核酸序列,例如:Gal4 結合位置。 報導基因」是指一可方便測定其表現程度之基因, 例如·螢光素(luciferase 〔 Luc〕)基因、分泌型鹼性磷 酉夂水解酶(secreted alkaline ph〇sphatase 〔 SEAP〕)基因、 或具螢束蛋白(如EGFP或RED)。一報導基因與啟動子「相 連且與其作用」是指此基因的轉錄作用受此啟動子控制。 「DNA結合區(DNA binding domain)」是指一段可結 合DNA的胺基酸序列,例如·· Gal4蛋白的n端區域(第1-147 個胺基酸,縮寫為Gal4N )。 200307040 「轉錄抑制區」 胺基酸序列,例如: 腺激素受器之靜止> 是指一段能夠抑制啟 Max結合蛋白(Mad ) 質(Silencing mediato and thyroid horm〇ne receptor〔 SMRT〕)。 動子轉錄活性的 、A酸與甲狀 r 〇f retinoic acid 「餌」多肽鏈肖「獵物」多肽鏈是—對彼此會相互作 用之多肽鏈’例如:Α酸核蛋白受器(retin〇id 〔RAR〕)與它的第二交互作用區(interacting domain π 〔IDII〕 ) ;β型癌化成長因子第一型受器(transf〇rmingJinked turned. The regulatory sequence is "linked to the promoter and its role (" ㈣ ,,,,, t〇) '"refers to a nucleic acid sequence that can regulate (eg, the activity of the addon." Protein-binding domain ) b 4b 疋 Cai said a nucleic acid sequence that can bind to proteins, such as: Gal4 binding site. "Reporter gene" refers to a gene that can easily determine the extent of its expression, such as luciferase (Luc) gene, secretion Type alkaline phosphatase hydrolase (SEAP) gene, or a fluorescent protein (such as EGFP or RED). A reporter gene "linked to and interacts with the promoter" refers to the transcription of this gene The action is controlled by this promoter. "DNA binding domain" refers to an amino acid sequence that can bind DNA, such as the n-terminal region of the Gal4 protein (1-147 amino acids, abbreviated as Gal4N) 200307040 "transcriptional repressive region" amino acid sequence, for example: resting of the adenoid receptor > refers to a section capable of inhibiting the Max-binding protein (Mad) (Silencing mediato and thyroid hormone) receptor [SMRT]). A transcript-active, A-acid and thyroid retinoic acid "bait" polypeptide chain "prey" polypeptide chain is-the polypeptide chain that will interact with each other 'For example: A acid nuclear protein Receptor (retin〇id [RAR]) and its second interaction region (interacting domain π [IDII]); β-type cancerous growth factor type 1 receptor (transf〇rming

growth facto卜β type ! recept〇r 〔 TRI〕)與 ρκ5〇6 結合蛋 白(FKBP12 ),及β-凱特素(β-catenin)與τ細胞因子(τ cell factor 〔 TCF〕)。「餌」多肽鏈與「獵物」多肽鏈間 的相互作用能被一化合物抑制(例如:核酸、多肽鏈、小 段胜肽、配位子、抗體、小分子、酯質、醣類;或從動物、 植物、真菌、微生物中分離之天然萃取物)。此化合物無 論與「餌」多肽鏈或「獵物」多肽鏈結合,都可達到抑制 目的。Growth facto (β type! receptor [TRI]) and ρκ5 06 binding protein (FKBP12), and β-catenin and τ cell factor (TCF). The interaction between the "bait" polypeptide chain and the "prey" polypeptide chain can be inhibited by a compound (eg, nucleic acid, polypeptide chain, small peptides, ligands, antibodies, small molecules, esters, sugars; or from animals Natural extracts from plants, fungi, microorganisms). This compound can achieve the purpose of inhibition whether it is combined with the "bait" polypeptide chain or the "prey" polypeptide chain.

本發明另一態樣是一種細胞(例如:哺乳類動物細胞), 其係包含(1 ) 一第一段核酸,其係包括一個啟動子、與啟 動子相連且與其作用之一段含有蛋白質接合區的轉錄調節 序列、及與啟動子相連且與其作用之一個報導基因;(2) 一第二段核酸,其係可編碼產生一第一段重組多肽鏈,該 第一段重組多肽鏈包含一個可和蛋白質接合區相結合之 DNA結合區與一段「餌」多肽鏈;(3) —第三段核酸,其 係可編碼產生一第二段重組多肽鏈,該第二段重組多肽鏈 7 200307040Another aspect of the present invention is a cell (eg, mammalian cell), which comprises (1) a first nucleic acid, which includes a promoter, a segment connected to the promoter and a protein-binding region interacting with the promoter. Transcriptional regulatory sequences and a reporter gene linked to and acting on the promoter; (2) a second nucleic acid that encodes a first recombinant polypeptide chain, the first recombinant polypeptide chain contains a The DNA binding region combined with the protein binding region and a "bait" polypeptide chain; (3) — the third nucleic acid, which can encode to generate a second recombinant polypeptide chain, the second recombinant polypeptide chain 7 200307040

,含-個轉錄抑制區與一段可和「辑」多肽鏈相互結合之 「狼物」多肽鏈。「辦」多肽鏈與「鐵物」多肤鍵之間有 交互作用就會抑制報導基因的表,見,「餌」多肽鏈與「獵 物」多肽鏈間的交互作用被干擾就會活化報導基因的表現。 「本發明也係關於一種方法,其係可用來辨認出會干擾 「餌」多肽鏈與「獵物」多肽鏈間交互作用之化合物。此 方法包含提供一上述之分裂雜合系統或細胞,以及讓此系 統或細胞與化合物接觸。倘若報導基因的表現程度在有化 合物時比沒有化合物時多,即表示此化合物會抑制「餌」 多肤鏈與「獵物」多肽鏈間的交互作用。 本發明提供一種系統及一種方法,可用來辨認出可抑 制「_」多肽鏈與「獵物」多肽鏈間交互作用之化合物, 亦 ’ 咼通量篩選(High throughput screening )。經此方 法辨識出的化合物,可用來治療涉及蛋白質間交互作用不 正常之疾病。舉例來說,在一基因治療中,可對亟需治療 之患者施予一有效量之可編碼產生一具療效蛋白質之核 酸0, Contains a transcriptional repression region and a "wolf" polypeptide chain that can be combined with the "poly" polypeptide chain. If there is an interaction between the polypeptide peptide and the iron iron polypeptide bond, the reporter gene table will be inhibited. See, the interaction between the "bait" polypeptide chain and the "prey" polypeptide chain will interfere with the reporter gene. Performance. "The present invention also relates to a method that can be used to identify compounds that interfere with the interaction between the" bait "polypeptide chain and the" prey "polypeptide chain. This method includes providing a dividing hybrid system or cell as described above, and contacting the system or cell with a compound. If the reported gene performs more in the presence of the compound than in the absence of the compound, it means that the compound inhibits the interaction between the "bait" polypeptide chain and the "prey" polypeptide chain. The present invention provides a system and a method for identifying compounds that can inhibit the interaction between a "_" polypeptide chain and a "prey" polypeptide chain, and also a high throughput screening. The compounds identified by this method can be used to treat diseases involving abnormal interactions between proteins. For example, in a gene therapy, a patient in need of treatment may be given an effective amount of a nucleic acid that encodes a protein that produces a therapeutic effect.

本發明之一或多個實施例將詳細說明如下。本發明的 其他優點、特色及動機亦可藉由詳細說明書及專利申請範 ί 圍而變得顯而易見。 【實施方式】 本發明提供一種方法,利用一種分裂雜合系統來辨認 出可抑制「餌」多肽鏈與「獵物」多肽鏈間交互作用之化 200307040 合物’此系 系统包括三項元件:一段核 動子、與啟勤^ 其係包括一個啟 動子相連且與其作用之一段含 啟 、轉錄調節库 蛋白質接合區 基因;一筮一 其作用之一個報邕 質 \重組多肽鏈’其係包含一個 質接合區相紐人 個了和前述蛋白 〜段重%容队 餌」多肽鏈;一第 、夕肽鏈,其係包含一個轉錄抑 弟 述「餌」多队 13制區與一段可和前 鍵與「徵物 互結合之「撒物…鍵。「館」多肤 表現,,肽鍵之間有交互作用就會抑制報導基因的 擾就备、、…乡狀鏈與「獵物」多肽鏈間的交互作用被干 項元二導基因的表現。以下將詳細敘述此系統内各 仵及本發明方法: Μ 41 · ju 一個DNA結合區斑ί「館i多肽赫 ^ 任何會跟特定ϋΝΑ序列結合的一段多肽鏈均可用來 §作DNA έ士人 八、、、。合區;DNA結合區可從天然存在的dnA結合 ^ J y| y ,口 传’例如:原核或真核生物的DNA結合蛋白。另 外,DNA έ士人 Γ- 、、Ό 3區也可是一段從經人工改造而與特定DNA序 列互相作用之蛋白中取得的多肽鏈。 天然真核DNA結合蛋白之Dna結合區的例子包括Ρ53 蛋白、τOne or more embodiments of the present invention will be described in detail as follows. Other advantages, features, and motivations of the present invention will also become apparent from the detailed description and the scope of patent applications. [Embodiment] The present invention provides a method for identifying a chemical compound that can inhibit the interaction between a "bait" polypeptide chain and a "prey" polypeptide chain by using a split hybrid system. The system includes three elements: a segment The nuclear motif is related to Qiqin ^ It consists of a promoter linked to its function and contains a gene of the transcriptional regulation library protein junction region; one of its functions is a reporter \ recombinant polypeptide chain which contains one The peptide junction of the cytoplasmic junction is the same as the aforementioned protein ~ paragraph weight% capacity bait "polypeptide chain; a peptide chain, which contains a transcriptional suppression" bait "multi-team 13 system area and a section of the reconcilable The "spray ..." bond that combines the "recruitment" and "recruitment." Polypeptide shows that the interaction between peptide bonds will inhibit the interference of the reporter gene, ... the country chain and the "prey" polypeptide chain Interactions were expressed by stem-element metagenic genes. The following will describe in detail each system in the system and the method of the present invention: Μ 41 · ju A DNA binding region spot, "A library peptide" Any polypeptide chain that can bind to a specific DNA sequence can be used as a DNA operator The DNA binding region can be bound from the naturally occurring dnA ^ J y | y, orally, for example, a DNA binding protein of a prokaryotic or eukaryotic organism. In addition, the DNA is Γ-, 、 3 The region may also be a polypeptide chain obtained from a protein that has been artificially engineered to interact with a specific DNA sequence. Examples of DNA binding regions of natural eukaryotic DNA-binding proteins include the P53 protein, τ

Un蛋白、Fos蛋白、GCN4蛋白及Gal4蛋白;DNA 。。區也可從病毒蛋白中產生,如乳突狀瘤病毒E2蛋白; 曰’ DNA結合區可從原核生物獲得,例如:可使用大腸 f _的LexA抑制蛋白或丁etR抑制蛋白;或dna結合區 了從嗜菌體中取得,例如:λ _菌體的心蛋白。典型的真 200307040Un protein, Fos protein, GCN4 protein and Gal4 protein; DNA. . Regions can also be produced from viral proteins, such as the papillomavirus E2 protein; "DNA binding regions can be obtained from prokaryotes, for example: LexA inhibitor protein or DetR inhibitor protein of the large intestine f_; or DNA binding region It is obtained from phages, such as: λ_ cardiomyocytes. Typical true 200307040

核生物的DNA結合區還包括P22 Arc抑制子、MetJ、 CENP-B、Rapl、Xyis/Ada/AraC、 Bir5 及 DtxR 的 〇NA 結合部位。 此DNA結合蛋白也可以是經重組技術產生之非天然存 在的DNA結合區,用來產生全新、可選擇性地與特定 序列結合之DNA結合蛋白的方法,此方法在此領域中為已 知技術,可參閱美國第5,198,346號專利。The DNA-binding region of nuclear organisms also includes the oNA-binding sites of P22 Arc repressor, MetJ, CENP-B, Rapl, Xyis / Ada / AraC, Bir5, and DtxR. The DNA-binding protein may also be a non-naturally occurring DNA-binding region produced by recombinant technology, a method for generating a completely new and selectively binding DNA-binding protein. This method is known in the art. See U.S. Patent No. 5,198,346.

此重組蛋白的基本要求包括能與位於適當報導基因上 游之一特定核酸序列(就是DNA結合位)專一地結合,它 本身應該不會或幾乎不會變更此報導基因的轉譯活動;同 時希望「销1」多肽鏈不會干擾此DNA結合區結合至DN A 上之結合位置的能力。The basic requirements of this recombinant protein include its ability to specifically bind to a specific nucleic acid sequence (ie, a DNA binding site) located upstream of the appropriate reporter gene, which itself should not or hardly alter the translation activity of the reporter gene; meanwhile, The 1 "polypeptide chain will not interfere with the ability of this DNA binding region to bind to the binding site on DNA.

此DNA結合區可包含寡聚合構形(〇iig〇inerizati〇n motifs),已知某些轉譯調控子會雙體聚合。雙體聚合可促 進轉譯調控子間協力結合於其同源的DNA結合位置上,例 如··當使用一 LexA蛋白之DNA結合區時,其可包括雙體 聚合形式的LexA蛋白之DNA結合區,此雙體聚合形式可 加速形成有效的LexA蛋白雙體,及最佳化其與DNA間的 結合作用(參閱 Golemis and Brent ( 1992 ) Mol· Cell Biol. 12:3006 )。其他具代表性的寡聚合構形包括p53蛋白的四 聚體區域,以及BCR-ABL蛋白的四聚體區域。 「餌」多肽鏈可以是任何我們感興趣的蛋白,其包括 已知、未知,或是被懷疑有診斷、治療或藥理學上具重要 性的蛋白。舉例來說’我們感興趣的蛋白可能是一個被懷 10 200307040This DNA-binding region may comprise an oligomeric configuration (oiiginerization motifs), and some translational regulators are known to polymerize dimers. Dimer polymerization can promote translational regulators to cooperate to bind to their homologous DNA binding sites. For example, when a DNA binding region of a LexA protein is used, it can include a DNA binding region of the LexA protein in the form of a dimer polymerization. This dimerized form can accelerate the formation of effective LexA protein dimers and optimize their binding to DNA (see Golemis and Brent (1992) Mol. Cell Biol. 12: 3006). Other representative oligomeric configurations include the tetrameric region of the p53 protein and the tetrameric region of the BCR-ABL protein. A "bait" polypeptide chain can be any protein of interest, including known, unknown, or suspected proteins of diagnostic, therapeutic, or pharmacological importance. For example, the protein we ’re interested in might be a pregnant 10 200307040

疑會抑制或活化細胞内作用(例如:受器的信息傳遞、細 胞凋亡、細胞增生、細胞分化、輸入或輸出毒物和營養物 質)的蛋白。「飼:」多肽鏈的實例包括致癌蛋白,如myc 蛋白、Ras蛋白、src蛋白和Fos蛋白;抑癌蛋白,如p53 蛋白、ρ2 1蛋白、p 1 6蛋白、Rb蛋白和持續活化且刪除掉碳 酸化位置的 Rb 蛋白(參閱 Knudsen et al. ( 1 999 ) Oncogene 18:5239-45 );參與調節細胞循環的蛋白質,如激酶(例如: TRI )及磷酸水解酶;或參與信息傳遞的蛋白質,例如:IDII 蛋白、β-飢特素(β-catenin)、Zap-70蛋白或SAM-68蛋白。 感興趣的蛋白質全部或其片段都可以做為「餌」多肽鏈。 當感興趣的蛋白質過大,例如分子量超過兩萬道耳吞,則 使用多肽鏈的片段較為方便。 一個不具結構的多肽鏈聯結子可存在於DNA結合區與 「餌」多肽鏈間,聯結子可加速DNA結合區和DNA上對 應之結合位間的交互作用以及「餌」多肽鏈與「獵物」多 肽鏈間的交互作用。Proteins suspected of inhibiting or activating intracellular effects (eg, receptor message transmission, cell apoptosis, cell proliferation, cell differentiation, import or export of toxicants and nutrients). Examples of "feed:" polypeptide chains include oncogenic proteins such as myc protein, Ras protein, src protein, and Fos protein; tumor suppressor proteins such as p53 protein, p21 protein, p16 protein, Rb protein, and continuous activation and deletion Carbonated Rb proteins (see Knudsen et al. (1 999) Oncogene 18: 5239-45); proteins involved in regulating cell cycle, such as kinases (for example: TRI) and phosphohydrolase; or proteins involved in information transmission, For example: IDII protein, β-catenin, Zap-70 protein or SAM-68 protein. All or a fragment of the protein of interest can be used as a "bait" polypeptide chain. When the protein of interest is too large, such as a molecular weight of more than 20,000 channels, it is convenient to use fragments of the polypeptide chain. An unstructured polypeptide chain linker can exist between the DNA binding region and the "bait" polypeptide chain. The linker can accelerate the interaction between the DNA binding region and the corresponding binding site on the DNA and the "bait" polypeptide chain and the "prey" Interactions between polypeptide chains.

重組多肽鏈可從一内含可編碼產生DNA結合區與「轉」 多肽鏈之核酸序列的载體來產生。在哺乳動物中生產蛋白 之合適的表現載體已屬習知技術,例如··載體p S G4 2 4 (參 閱 Sadowski and Ptashne ( 1989 ) Nucleic Acid Research, 1 7:7539 )及載體 pM (來源為 ciontech,Palo Alto,CA)。 表現載體上可包括一個或多個調控序列(例如:增強子 〔enhancer〕),其係與可指引此重組多肽鏈表現之啟動子 相連且與其作用;表現載體也包括選擇性標記基因,此基 11 200307040 因的表現與否可用央妞、联,1丄 ^ 來挑、出含有此標記基因及不含有此標 5己基因的細胞。漠媒从 、擇丨生軚記為熟知技術,例如:新黴素 (neomycin )、保伞也主 ”木嫉素(zeocin )和胚黴素(blasticidin)。 此載體在細胞内可以逃& ,、色體外的DNA形式存在’也可以被 嵌入到染色體内。Recombinant polypeptide chains can be produced from a vector containing a nucleic acid sequence encoding a DNA-binding region and a "trans" polypeptide chain. Suitable expression vectors for the production of proteins in mammals are well known techniques, such as the vector p S G4 2 4 (see Sadowski and Ptashne (1989) Nucleic Acid Research, 17: 7539) and the vector pM (source: ciontech , Palo Alto, CA). The expression vector may include one or more regulatory sequences (for example, enhancers), which are linked to and function with a promoter that can direct the expression of the recombinant polypeptide chain; the expression vector also includes a selectable marker gene. 11 200307040 Due to the performance, you can use the young girl, the couple, and 1 、 ^ to pick and select the cells that contain the marker gene and those that do not contain the marker gene. Desert media are known as well-known technologies, such as neomycin, zeocin and blasticidin. This vector can escape & in cells The existence of DNA forms outside the chromosome can also be embedded in the chromosome.

辨」夕肤鍵與「獵物」多肽鏈會互相作用:此二蛋 口 的交互作用連接了和「_」多肽鏈融合之DNA結合 區及和€物」多肽鏈融合之轉譯抑制區,產生一個能夠 直接抑制報導基因表現的蛋白複合體。 如以上敘述,重組多肽鏈可從一載體產生,其含有可 %產生轉琿抑制區與「獵物」多肽鏈之核酸序列。載體Distinguish the interaction between the "skin bond" and the "prey" polypeptide chain: the interaction between the two egg mouths connects the DNA binding region fused to the "_" polypeptide chain and the translation inhibition region fused to the "poly" polypeptide chain to generate a A protein complex capable of directly inhibiting reporter gene expression. As described above, the recombinant polypeptide chain can be produced from a vector that contains a nucleic acid sequence that can produce a transition inhibitory region and a "prey" polypeptide chain. Carrier

可 乂 包括核疋位序列(nuclear l〇calizati〇n sequence,例 如·從Gal4和ΜΑΤα2基因取得的序列),核定位序列可 組多肽鏈到達位於核内的報導拳因片段的過程達到最 大效率。 ’ 若報導基因有表現,表示「餌」多肽鏈與r獵物」多 12 200307040 肽鏈間會互相作用。任何適當的報導基因均可用於此分裂 雜合系統中,具代表性的例子包括氯黴素乙醯轉移酶 (chloramphenicol acetyl transferase C CAT ),參閱 Alton and Vapnek ( 1 979 ) Nature 282:864-869 );以及其他酵素 偵測系統,如β-半乳糖苷酶(β-galactosidase )、螢火蟲螢 光素(firefly luciferase,參閱 de Wet et al. ( 1 987 )Mol. Cell. Biol· 7:725-737 ))、細菌螢光素(bacterial luciferase,參 閱 Engebrecht and Silverman ( 1 984 ) PNAS 1:41 54-41 58 ; Baldwin et al. ( 1 984 ) Biochemistry 23:3 663-3 667 )、藻螢 光 蛋 白 ( phycobiliproteins , 特 別 是 藻 紅 素 〔phycoerythrin〕)、鹼性磷酸水解酶(參閱 Toh et al. (1 989 ) Eur. J Biochem. 1 82:23 1-238; Hall et al. ( 1 983 ) J. Mol. Appl. Gen. 2:101 )、分泌型鹼性磷酸水解酶(secreted alkaline phosphatase〔 SEAP〕,參閱 Cullen and Malim (1 992 ) Methods in Enzymol. 216:362-3 68 )或榮光蛋白(例 如· GFP )。其他適當的報導基因還包括可編碼產生細胞表 面抗原的基因(例如:CD 16 )和抗藥性基因(例如:次黃 嘌呤鳥糞嘌呤磷醣基核苷轉換酶〔HPRT〕)。 報導基因的轉譯數量可以由該技術領域中熟知方法測 量得知。例如,特定信息RNA之表現可用北方墨點法檢出, 特定的蛋白質產物可以使用抗體辨認。報導基因所編碼的 蛋白質也可以從分析與此蛋白質有關的固有活性偵測到, 舉例來說’此報導基因可編碼出基因產物, 性,引發-以榮光、顏色或冷光為主的可被偵:;之信酵號素, 13 200307040 較佳是提供兩個或更多報導基因片段,而其都受到 「餌」多肽鏈與「獵物」多肽鏈間交互作用的調控,例如: GFP和BFP基因。同時表現每一個別報導基因亦提供了一 種可用來分辨「餌」多肽鏈與「獵物」多肽鏈間是否真的 產生交互作用的工具,例如,可分辨出因突變或因其他假 陽性事件所造成之報導基因的活化現象。It can include nuclear ligament sequences (such as sequences obtained from the Gal4 and MATα2 genes), and the nuclear localization sequence can achieve the maximum efficiency when the polypeptide chain reaches the reporter fragment located in the nucleus. ’If the reported gene is expressed, it means that there are more" bait "polypeptide chains and r prey. 12 200307040 Peptide chains will interact with each other. Any suitable reporter gene can be used in this cleavage hybrid system. Representative examples include chloramphenicol acetyl transferase C CAT. See Alton and Vapnek (1 979) Nature 282: 864-869 ); And other enzyme detection systems, such as β-galactosidase (β-galactosidase), firefly luciferase (see de Wet et al. (1 987) Mol. Cell. Biol · 7: 725- 737)), bacterial luciferase (see Engebrecht and Silverman (1 984) PNAS 1:41 54-41 58; Baldwin et al. (1 984) Biochemistry 23: 3 663-3 667), algal fluorescence Proteins (phycobiliproteins, especially phycoerythrin), alkaline phosphatase (see Toh et al. (1 989) Eur. J Biochem. 1 82:23 1-238; Hall et al. (1 983) J. Mol. Appl. Gen. 2: 101), secreted alkaline phosphatase (SEAP), see Cullen and Malim (1 992) Methods in Enzymol. 216: 362-3 68) or glorious protein (Eg · GFP). Other suitable reporter genes include genes encoding cell surface antigens (eg, CD 16) and drug resistance genes (eg, hypoxanthine guanopurine phosphorosylnucleoside converting enzyme [HPRT]). The amount of translation of a reporter gene can be measured by methods well known in the art. For example, the performance of specific information RNA can be detected by the northern blot method, and specific protein products can be identified using antibodies. The protein encoded by the reporter gene can also be detected by analyzing the intrinsic activity associated with this protein. For example, 'the reporter gene can encode a gene product, sex, trigger-can be detected mainly by glory, color or cold light. :; Enzyme, 13 200307040 It is better to provide two or more reporter gene fragments, both of which are regulated by the interaction between the "bait" polypeptide chain and the "prey" polypeptide chain, for example: GFP and BFP genes . Simultaneous expression of each individual reporter gene also provides a tool that can be used to distinguish whether the "bait" polypeptide chain and the "prey" polypeptide chain actually interact, for example, to identify mutations or other false positive events. Reported gene activation.

報導基因可由適宜的載體攜帶,此載體可在細胞(例 如哺乳動物細胞)内保持游離基因組形式或保持嵌入細胞 染色體之形式。 宿主細胞 此分裂雜合系統在活體内及活體外均可使用。任何人 工培養細胞(例如:初級細胞、次級細胞或不死化哺乳動 物細胞)均可被運用於在活體内使用之分裂雜合系統,典 型的哺乳動物細胞有小鼠、倉鼠、大鼠、兔子、狗、牛以 及包括人類在内之靈長類動物的細胞,它們可以是各式各 樣不同的組織類型,包括巨細胞、内皮細胞、肝細胞、腎 細胞及其他細胞種類。 Φ 「初級細胞(primary cells)」是從哺乳動物分離出的 細胞(例如:從組織來源),其係為被轉移到次培養之前 的首次培養細胞;「次級細胞(secondary cells)」是指所有 接續培養的細胞;哺乳動物初級、次級細胞中可被轉染的 例子包括纖維母細胞、角質細胞、上皮細胞(例如:乳房 上皮細胞和腸上皮細胞)、内皮細胞、膠質細胞、神經細 14 200307040 胞、血中具有生物特徵的成份(例如:淋巴球和骨髓細胞)、 肌肉細胞以及這些體細胞類型的前身。 「不死化細胞(immortalized cells)」是可無限延續生 命的細胞株,不死化人類細胞株可使用在此哺乳動物之分 裂雜合系統的例子,包括但不侷限於以下:CV-1 細胞、 HT 1 080 細胞(ATCC CCL 121 )、子宮頸癌細胞(HeLa cells ) 及其衍生物 (ATCC CCL 2、2.1和 2.2) 、 MCF-7乳癌The reporter gene can be carried by a suitable vector that can remain in the form of a free genome in a cell (e.g., a mammalian cell) or remain embedded in the chromosome of the cell. Host Cell This split hybrid system can be used in vivo and in vitro. Any artificially cultured cells (such as primary cells, secondary cells, or immortalized mammalian cells) can be applied to the split hybrid system used in vivo. Typical mammalian cells are mice, hamsters, rats, rabbits , Dog, cattle, and primate cells, including humans, they can be of a variety of different tissue types, including giant cells, endothelial cells, liver cells, kidney cells, and other cell types. Φ "Primary cells" are cells isolated from mammals (for example, from tissue sources), which are the first cultured cells before being transferred to the subculture; "secondary cells" refer to All subsequent cultured cells; examples of mammalian primary and secondary cells that can be transfected include fibroblasts, keratinocytes, epithelial cells (eg, breast epithelial cells and intestinal epithelial cells), endothelial cells, glial cells, neurons 14 200307040 Cells, blood-derived components (such as lymphocytes and bone marrow cells), muscle cells, and precursors of these somatic cell types. "Immortalized cells" are cell lines that can extend life indefinitely. Examples of immortalized human cell lines that can be used in this mammalian hybrid system include, but are not limited to, the following: CV-1 cells, HT 1 080 cells (ATCC CCL 121), cervical cancer cells (HeLa cells) and their derivatives (ATCC CCL 2, 2.1 and 2.2), MCF-7 breast cancer

細胞(ATCC BTH 22 )、K-562 白血病細胞(ATCC CCL 243 )、 KB 腫瘤細胞(ATCC CCL 17 ) 、2780AD 卵巢癌細胞(參 閱 Van der Blick et al· ( 1988 ) Cancer Res 48:5927-5932 )、 Raji 細胞(ATCC CCL 86 )、Jurkat 細胞(ATCC TIB 152 )、 Namalwa 細胞(ATCC CRL 1432 )、HL-60 細胞(ATCC CCL 240 )、島迪(Daudi)細胞(ATCC CCL 213 ) 、RPMI 8226 細 胞(ATCC CCL 155 ) 、U-937 細胞(ATCC CRL 1 593 )、Cells (ATCC BTH 22), K-562 leukemia cells (ATCC CCL 243), KB tumor cells (ATCC CCL 17), 2780AD ovarian cancer cells (see Van der Blick et al. (1988) Cancer Res 48: 5927-5932) , Raji cells (ATCC CCL 86), Jurkat cells (ATCC TIB 152), Namalwa cells (ATCC CRL 1432), HL-60 cells (ATCC CCL 240), Daudi cells (ATCC CCL 213), RPMI 8226 cells (ATCC CCL 155), U-937 cells (ATCC CRL 1 593),

Bowes 黑色素瘤細胞(ATCC CRL 9607 ) 、WI-38VA13 亞Bowes melanoma cells (ATCC CRL 9607), WI-38VA13

系 2R4 細胞(ATCC CLL 75.1 )以及 MOLT-4 細胞(ATCC CRL 1 5 82 ),由人類細胞與其他物種細胞融合而成的雜種 融合瘤細胞亦可。也可使用次級人類纖維母細胞株,如 WI-38 ( ATCC CCL 75 )和 MRC-5 ( ATCC CCL 171 )。 可使用此技術領域中熟知的程序將上述質體轉染進入細 胞,哺乳動物細胞轉染方法的例子包括磷酸鈣與氣化鈣共 同沈澱法、DEAE-葡萄聚醣媒介轉染法、微脂粒感染、基因 鎗傳遞及電穿孔法。活體外轉染細胞適當的方法可從 Sambrook等人所著的分子複製-實驗室操作手冊第二版 15 200307040 (Molecular Cloning : A Laboratory Manual ( 1989 ),冷泉 港出版社,紐約冷泉港)或其他實驗室操作手冊找到。 篩選試驗 此分裂雜合系統可用來辨認出會干擾蛋白質間交互作 用的化合物。經此方法辨識出的化合物,可用來治療涉及 蛋白質間交互作用不正常之疾病。Line 2R4 cells (ATCC CLL 75.1) and MOLT-4 cells (ATCC CRL 1 5 82), and hybrid fusion tumor cells made of human cells and cells of other species may also be used. Secondary human fibroblast cell lines such as WI-38 (ATCC CCL 75) and MRC-5 (ATCC CCL 171) can also be used. The above-mentioned plastids can be transfected into cells using procedures well known in the technical field. Examples of mammalian cell transfection methods include co-precipitation method of calcium phosphate and calcium vaporization, DEAE-glucosan-mediated transfection method, microlipid Infection, gene gun delivery and electroporation. Appropriate methods for in vitro transfection of cells can be obtained from the Molecular Reproduction-Laboratory Handbook Second Edition by Sambrook et al. 15 200307040 (Molecular Cloning: A Laboratory Manual (1989), Cold Spring Harbor Press, Cold Spring Harbor, New York) or other Laboratory operating manual found. Screening test This split-hybrid system can be used to identify compounds that interfere with protein-protein interactions. The compounds identified by this method can be used to treat diseases involving abnormal interactions between proteins.

本發明的候選化合物可從此領域熟知的組合式分子資 料庫(combinatorial library )眾多研究方式中任一個得到, 這些分子資料庫包括:核酸分子資料庫、胜肽分子資料庫、 類胜肽(peptoid )分子資料庫(此分子資料庫中的分子有 胜肽的功能,但有全新、非胜肽的骨架,可抵抗酵素的降 解)、空間編址的平行固態或液態分子資料庫(spatially addressable parallel solid phase or solution phase libraries )、從去卷積法(deconvolution )或親和性層析法 獲得的合成分子資料庫,以及「單玻璃珠單化合物」(one-bead one-compound ) 分子 資料庫 。參閱 Zuckermann et al.The candidate compounds of the present invention can be obtained from any of a number of research methods of combinatorial library well-known in the art. These molecular databases include: nucleic acid molecular database, peptide molecular database, peptoid Molecular database (the molecules in this molecular database have the function of peptides, but have a new, non-peptide backbone that can resist the degradation of enzymes), spatially addressable parallel solid or liquid molecular databases (spatially addressable parallel solid phase or solution phase libraries), synthetic molecular databases obtained from deconvolution or affinity chromatography, and "one-bead one-compound" molecular databases. See Zuckermann et al.

(1994 ) J. Med. Chem. 37: 2678-85 和 Lam ( 1997 ) Anticancer Drug Des. 12:145 o 合成分子資料庫的方法可於此技術領域中找到許多實 例’例如:De Witt et al. (1 993) PNAS USA 90:6909 ; Erb et al (1994) PNAS USA 91:1 1422 ; Zuckermann et al. (1994) J. Med. Chem. 37:2678 ; Cho et al. (1993) Science 261:1303 ; Carrell et al. (1994) Angew. Chem. Int. Ed. Engl. 33:2059 ; 16 200307040(1994) J. Med. Chem. 37: 2678-85 and Lam (1997) Anticancer Drug Des. 12: 145 o Methods for synthesizing molecular libraries can be found in many examples in this technical field ', for example: De Witt et al. (1 993) PNAS USA 90: 6909; Erb et al (1994) PNAS USA 91: 1 1422; Zuckermann et al. (1994) J. Med. Chem. 37: 2678; Cho et al. (1993) Science 261: 1303; Carrell et al. (1994) Angew. Chem. Int. Ed. Engl. 33: 2059; 16 200307040

Carell et al· (1994) Angew. Chem· Int· Ed. Engl. 33:2061 以 及 Gallop et al. (1994) J. Med. Chem· 37:1 233。Carell et al. (1994) Angew. Chem. Int. Ed. Engl. 33: 2061 and Gallop et al. (1994) J. Med. Chem. 37: 1 233.

分子資料庫的分子可存在溶液中(參閱 Houghten (1992) Biotechniques 13:412-421)、或存在玻璃珠上(參 閱 Lam ( 1991 ) Nature 354:82-84)、晶片上(參閱 Fodor (1 993 ) Nature 3 64: 555-556)、細菌上(參閱 Ladner,美 國第 5,223,409號專利)、孢子上(參閱Ladner, supra)、 質體上(參閱 Cull etal· ( 1992) PN AS USA 89: 1865-1869 ) 或嗜菌體上(參閱 Scott and Smith ( 1990 ) Science 249: 386-390 ; Devlin ( 1990 ) Science 249: 404-406 ; Cwirla et al.( 1990) PNASUSA87:6378-6382; FeliciC 1991) J.Mol. Biol. 222: 301-3 1 0 及 Ladner,supra)。Molecules of the molecular database can be in solution (see Houghten (1992) Biotechniques 13: 412-421), or on glass beads (see Lam (1991) Nature 354: 82-84), on wafers (see Fodor (1 993 ) Nature 3 64: 555-556), bacterial (see Ladner, US Patent No. 5,223,409), spores (see Ladner, supra), plastids (see Cull etal · (1992) PN AS USA 89: 1865- 1869) or on mycoplasma (see Scott and Smith (1990) Science 249: 386-390; Devlin (1990) Science 249: 404-406; Cwirla et al. (1990) PNASUSA 87: 6378-6382; FeliciC 1991) J Mol. Biol. 222: 301-3 1 0 and Ladner, supra).

為了要辨認出可干擾蛋白質間交互作用的化合物,上 述之分裂雜合系統會與候選化合物接觸,報導基因表現程 度會與缺乏此化合物情況下的表現程度做相對評估。倘若 報導基因的表現程度在有候選化合物時比沒有候選化合物 時多’此候選化合物就會被認為是有潛力的藥物,可用來 治療涉及蛋白質間交互作用不正常之疾病。 4選試驗可在活體内或活體外進行。用細胞做試驗有 顯著的優點,例如起始物(即細胞)會自行複製,生物情 況跟正常生理環境較相近,而且可洞悉生體可用性(即化 合物是否可以進入細胞以作用於細胞内目標)及毒性(即 化合物是否危及細胞生長)。 以下的實施例僅供解釋為說明例證,且不限於詳細說 17 200307040 明書的其餘内容, 不目^任何熟悉該技術人士,不需更深入 進一步精巧的工作, ^ 都可以藉由這份文件之敘述完整地利 用本發明,這裡列集 〜準的所有出版品茲以其全部内容列入參In order to identify compounds that can interfere with protein-protein interactions, the above-mentioned split-hybrid systems will be in contact with candidate compounds, and the reported gene expression will be evaluated relative to the degree of expression in the absence of this compound. If the degree of expression of the reporter gene is greater when there is a candidate compound than when there is no candidate compound, this candidate compound is considered a potential drug and can be used to treat diseases involving abnormal interactions between proteins. The four tests can be performed in vivo or in vitro. There are significant advantages to using cells for testing. For example, the starting material (ie, the cell) will replicate on its own, the biological situation is closer to the normal physiological environment, and it can provide insight into the biological availability (ie, whether the compound can enter the cell to act on the intracellular target). And toxicity (ie, whether the compound threatens cell growth). The following examples are only for explanation and illustration, and are not limited to the details of the 17 200307040 certificate. It is not intended to ^ anyone familiar with the technology and does not need to go deeper and more delicate work, ^ can use this document The narrative uses the invention in its entirety, and all publications listed here are incorporated in their entirety by reference.

Gal4N-SMRT > η λ 汉1 Gal4N-Mad 和 Gal4N-SHP (短的異二 聚合對),被拿來:目,丨1 + 手术/貝彳试它們對於含有四份(4 copies) Gal4蛋 白、、、口 口位t TK啟動?,抑制其基因表現的能力。結果顯示Gal4N-SMRT > η λ Han1 Gal4N-Mad and Gal4N-SHP (short heterodimeric pairs), were used: mesh, 1 + surgery / bei test they are for 4 copies of Gal4 protein 、、、 口 口 位 t TK started? , The ability to inhibit its gene expression. The results show that

Gal4N-SMRT和Gal4N-Mad能夠抑制啟動子的活性,而Gal4N-SMRT and Gal4N-Mad can inhibit the activity of the promoter, while

Gal4N-SHP不能有效地抑制此啟動子的活性,這些結果暗 示SMRT和Mad可以被使用於建立分裂雜合系統。 Λ醆之分裂雜合条Μ 兩個融合蛋白,VP16-RAr和 Gal4N-IDII在含有 Gal-TK-Luc報導基因片段的細胞中一起被表現。結果顯 示’ RAR和IDII的交互作用導致報導基因活性被誘導約有 120倍,相反地,在imM A酸存在下,RAR與IDII的交互 作用則被妨礙,導致報導基因活性被誘導減少至只有7倍, 這些結果暗示RAR和IDII之間的交互作用相當強,且會被 外加的A酸干擾。 下一個例子:兩個融合蛋白,NLS (核定位序列)-ΗA (血球凝集素)-Mad-RAR 和 Gal4N-IDII 在含有 Gal-TK-Luc 報導基因片段的細胞中一起被表現。RAR和IDII間交互作 18 200307040 用導致報導基因活性被抑制約有7·5倍,而藉由加入A酸 (ImM),此抑制作用完全被逆轉。a酸只專一性地抑制蛋 白質間交互作用,A酸本身或其他一起轉染的對照組(即 Gal4N-Mad、Gal4N-IDII 和 NLS.HA_Mad-RAR)存在下不 會改變Gal-TK-Luc報導基因的活性。 gMV與RSV啟動子的使用 其他啟動子如CMV啟動子及RSV啟動子被拿來測 4,看看匕們是否有較兩的基礎活性,能容許有較寬的範 鲁 圍來測量抑制效應。五份(5 copies) Gal4蛋白結合位被置於 CMV或RSV啟動子的5’端,其連接在luc報導基因旁Gal4N-SHP cannot effectively inhibit the activity of this promoter. These results suggest that SMRT and Mad can be used to establish a split heterozygous system. The two fusion proteins of the cleavage heterozygous strand M of Λ 醆, VP16-RAr and Gal4N-IDII, are expressed together in cells containing the Gal-TK-Luc reporter gene fragment. The results showed that the interaction between RAR and IDII caused the reporter gene activity to be induced about 120 times. Conversely, in the presence of imM A acid, the interaction between RAR and IDII was hindered, resulting in the reporter gene activity being induced to decrease to only 7 These results suggest that the interaction between RAR and IDII is quite strong and will be disturbed by the added A acid. Next example: Two fusion proteins, NLS (nuclear localization sequence) -ΗA (hemagglutinin) -Mad-RAR and Gal4N-IDII, are expressed together in cells containing the Gal-TK-Luc reporter gene fragment. The interaction between RAR and IDII 18 200307040 caused the reporter gene activity to be inhibited approximately 7.5 times, and by adding A acid (ImM), this inhibition was completely reversed. A acid only specifically inhibits protein-protein interactions, and A acid itself or other control groups transfected together (ie Gal4N-Mad, Gal4N-IDII, and NLS.HA_Mad-RAR) will not change Gal-TK-Luc reports Gene activity. Use of gMV and RSV promoters Other promoters such as the CMV promoter and the RSV promoter were tested 4 to see if the daggers had two basic activities and could allow a wider range to measure the inhibitory effect. Five copies of the Gal4 protein binding site are placed at the 5 ’end of the CMV or RSV promoter, which is linked next to the luc reporter gene

(Gal-CMV-Luc 和 Gal-RSV-Luc ),結果,CMV 及 RSV 啟動子的基礎活性比TK啟動子高出很多。(Gal-CMV-Luc and Gal-RSV-Luc). As a result, the basic activity of the CMV and RSV promoters is much higher than that of the TK promoter.

Gal4N-SMRT 和 Gal4N-Mad 對 Gal-TK-Luc 有類似的 抑制作用。相較於對Gal-CMV-Luc的抑制而言,Gal4N-SMRT 對Gal-RSV-Lixc的抑制非常強(約3〇倍);另一方面, Gal4N-Mad對這兩個啟動子的抑制效應都不如其對τκ啟動 子來得有效。适些發現指出Gal-RSV-Luc加上SMRT抑制 麵 區是用來建立分裂雜合系統較好的組合。 下一個例子:兩個·融合蛋白,SMRT-RAR和Gal4N-IDII 在含有Gal-RSV-Luc報導基因片段的細胞中一起被表現。 矣口果顯不Gal4N-IDII和SMRT-RAR的交互作用有8.5倍的 抑制作用’此抑制作用在加入A酸處理後被逆轉。 另一對交互反應蛋白,TRI和FKBP12,被拿來測試在 19 200307040 分裂雜合系統中使用。已知此二蛋白質間的交互作用會被 小分子FK506抑制,TRI的胞内區域跟Gal4之dNA接合 區融合(Gal4_TRl ),FKBP12與SMRT的抑制區連接(SMRT-FKBP12 ),連同Gal4-RSV-Luc的此二質體一起轉染到CVe 1細胞裡。結果顯示Gal4-TRI和SMRT- FKBP12的交互反 應導致報導基因活性約倍的抑制。以FK5〇6處理之,蛋 白質交互反應被阻擋,導致與FK5〇6使用劑量相對應的啟 動子活性之活化。 i用報導基因SEAP及RED1 SEAP已被成功地使用在高通量篩選中。使用分裂雜合 系統來加速高通量篩選,建構一包含Gai-RSV-SEAP的質 體 ’ Gal4N-SMRT 和 Gal-RSV-SEAP —起轉染到 CV-1 細胞 裡。結果顯示Gal4N-SMRT造成報導基因活性I#倍的抑制; 此外,β-凱特素(β-catenin)和TCF間的交互作用,對於SEAp 報導基因活性與Luc報導基因活性之抑制程度相同。Gal4N-SMRT and Gal4N-Mad have similar inhibitory effects on Gal-TK-Luc. Compared with the inhibition of Gal-CMV-Luc, Gal4N-SMRT has very strong inhibition (about 30 times) of Gal-RSV-Lixc; on the other hand, Gal4N-Mad inhibits these two promoters Neither is as effective as the τκ promoter. Appropriate findings indicate that Gal-RSV-Luc plus SMRT inhibitory areas are a good combination for establishing a split-hybrid system. Next example: Two fusion proteins, SMRT-RAR and Gal4N-IDII, are expressed together in cells containing the Gal-RSV-Luc reporter gene fragment. It was found that the interaction between Gal4N-IDII and SMRT-RAR had an 8.5-fold inhibition effect. This inhibition effect was reversed after the addition of A acid treatment. Another pair of interacting proteins, TRI and FKBP12, were tested for use in the 19 200307040 split heterozygous system. It is known that the interaction between these two proteins will be inhibited by the small molecule FK506, the intracellular region of TRI is fused with the dNA junction region of Gal4 (Gal4_TRl), and FKBP12 is connected to the inhibition region of SMRT (SMRT-FKBP12), together with Gal4-RSV- Luc dimers were transfected into CVe 1 cells together. The results show that the interaction of Gal4-TRI and SMRT-FKBP12 results in approximately doubled inhibition of the reporter gene activity. When treated with FK506, the protein interaction was blocked, leading to the activation of promoter activity corresponding to the dose of FK506. The reporter genes SEAP and RED1 SEAP have been successfully used in high-throughput screening. A split-hybrid system was used to speed up high-throughput screening and construct a Gai-RSV-SEAP-containing plastid, Gal4N-SMRT and Gal-RSV-SEAP—transfected into CV-1 cells. The results showed that Gal4N-SMRT caused I # -fold inhibition of the reporter gene activity. In addition, the interaction between β-catenin and TCF had the same degree of inhibition of SEAp reporter gene activity as Luc reporter gene activity.

Gal4N-SMRT可有效地抑制RED1的表現,然而單單 Gal4N或報導基因仍有螢光信號,從redi產生之紅色榮光, 於A酸、RAR和IDII或FK506、TRI和FKBP12存在下均 可偵測到。 &他實施例 可以任何組合方式合併本發明說明書中所揭露的各個 特徵。本發明說明書中揭露的每一個特徵均可能被其他有 20 200307040 相同、相等或相似性質的特徵替換,因此,除非有其他表 達陳述,這裡揭露的每一個特徵都只是一群具有相等或相 似性質的特徵之單一舉例。 從以上敘述,熟悉該領域技術人士能夠輕易地了解本 發明最重要及根本的特性,在未偏離其中的精神與範_下, 可對本發明進行不同的變更與修改,以將其適應於不同的 用途及環境,因此,其他實施例也屬於附隨之申請專利範 圍的範缚。Gal4N-SMRT can effectively inhibit the performance of RED1, but Gal4N or the reporter gene alone still has a fluorescent signal, and the red glory generated from redi can be detected in the presence of A acid, RAR and IDII or FK506, TRI and FKBP12 . & Other embodiments The features disclosed in the description of the present invention may be combined in any combination. Each feature disclosed in the description of the present invention may be replaced by other features having the same, equal, or similar properties. Therefore, unless there are other expressions, each feature disclosed here is only a group of features with equal or similar properties. Single example. From the above description, those skilled in the art can easily understand the most important and fundamental characteristics of the present invention. Without departing from the spirit and scope of the present invention, different changes and modifications can be made to the present invention to adapt it to different Use and environment, therefore, other embodiments also fall within the scope of the scope of the accompanying patent application.

21twenty one

Claims (1)

200307040 拾、申請專利範圍: 1. 一種分裂雜合系統,其包含: 一段核酸,其中包括一個啟動子,與啟動子相連 且與其作用之一段含有蛋白質接合區的轉錄調節序 列,及與啟動子相連且與其作用之一個報導基因; 第一段重組多肽鏈,其中包含一個可和蛋白質接 合區相結合之DNA結合區,與一段「餌」多肽鏈;200307040 Scope of patent application: 1. A split hybrid system comprising: a nucleic acid, including a promoter, a transcriptional regulatory sequence connected to the promoter and containing a protein junction region, and connected to the promoter And a reporter gene that acts on it; the first recombinant polypeptide chain, which contains a DNA binding region that can be combined with the protein junction region, and a "bait" polypeptide chain; 第二段重組多肽鏈,其中包含一個轉錄抑制區, 與一段可和「I耳」多肽鏈相互結合之「獵物」多肽鏈; 其中的「餌」多肽鏈與「獵物」多肽鏈之間有交互作 用就會抑制報導基因的表現,「餌」多肽鏈與「獵物」 多肽鏈間的交互作用被干擾就會活化報導基因的表 現0 2. 如申請專利範圍第1項所述之一種分裂雜合系統,其 中之啟動子為胸腺嘧啶激酶(TK )啟動子、巨細胞病 毒(CMV )啟動子或羅氏肉瘤病毒(RSV )啟動子。The second segment of the recombinant polypeptide chain contains a transcriptional repression region and a "prey" polypeptide chain that can be combined with the "I ear" polypeptide chain; there is an interaction between the "bait" polypeptide chain and the "prey" polypeptide chain The effect will inhibit the performance of the reporter gene, and the interaction between the "bait" polypeptide chain and the "prey" polypeptide chain will be disturbed to activate the performance of the reporter gene. 2. A cleavage hybrid as described in item 1 of the scope of patent application System, wherein the promoter is a thymine kinase (TK) promoter, a cytomegalovirus (CMV) promoter, or a Roche sarcoma virus (RSV) promoter. 3. 如申請專利範圍第1項所述之一種分裂雜合系統,其 中之蛋白質接合區為 Gal4蛋白結合位置,且其DNA 結合區為Gal4N蛋白。 4. 如申請專利範圍第3項所述之一種分裂雜合系統,其 中之啟動子為胸腺嘧啶激酶啟動子、巨細胞病毒啟動 22 200307040 子或羅氏肉瘤病毒啟動子,且其轉譯抑制區為Max結 合蛋白(Mad )或 A酸與甲狀腺激素受器之靜止介質 (SMRT )區。 5. 如申請專利範圍第1項所述之一種分裂雜合系統,其 中「餌」多肽鏈與「獵物」多肽鏈,可藉由與「餌」 多肽鏈或「獵物」多肽鏈結合的化合物,阻止其彼此 間交互作用。3. A split-hybrid system according to item 1 of the scope of the patent application, wherein the protein-binding region is a Gal4 protein binding site and the DNA-binding region thereof is a Gal4N protein. 4. A split-hybrid system as described in item 3 of the patent application, wherein the promoter is a thymine kinase promoter, a cytomegalovirus promoter 22 200307040 promoter, or a Roche sarcoma virus promoter, and its translational suppression region is Max Binding protein (Mad) or A acid and the resting medium (SMRT) region of the thyroid hormone receptor. 5. A split hybrid system as described in item 1 of the scope of the patent application, wherein the "bait" polypeptide chain and the "prey" polypeptide chain can be a compound that binds to the "bait" polypeptide chain or "prey" polypeptide chain, Prevent them from interacting with each other. 6. 一種細胞,其包含: 第一段核酸,其中包括一個啟動子,與啟動子相 連且與其作用之一段含有蛋白質接合區的轉錄調節序 列,及與啟動子相連且與其作用之一個報導基因; 第二段核酸,其係可編碼產生第一段重組多肽鏈, 其中包含(1) 一個可和蛋白質接合區相結合之DNA 結合區,與(2) —段「餌」多肽鏈;6. A cell, comprising: a first nucleic acid comprising a promoter, a transcriptional regulatory sequence connected to the promoter and interacting with it comprising a protein junction region, and a reporter gene connected to the promoter and interacting with the promoter; The second nucleic acid, which can encode the first recombinant polypeptide chain, contains (1) a DNA binding region that can be combined with the protein junction region, and (2) a "bait" polypeptide chain; 第三段核酸,其係可編碼產生第二段重組多肽鏈, 其中包含(1 ) 一個轉錄抑制區,與(2 ) —段可和「餌」 多肽鏈相互結合之「獵物」多肽鏈; 其中的.「餌」多肽鏈與「獵物」多肽鏈之間有交 互作用就會抑制報導基因的表現,「餌」多肽鏈與「獵 物」多肽鏈間的交互作用被干擾就會活化報導基因的 表現。 23 200307040 7·如申請專利範圍第6項所述之一種細胞,其中之啟動 子為胸腺喊ϋ定激酶(ΤΚ )啟動子、巨細胞病毒(CMV ) 啟動子或羅氏肉瘤病毒(RSV)啟動子。 8 · 如申請專利範圍第6項所述之一種細胞,其中之蛋白 質接合區為Gal4蛋白結合位,且其DNA結合區為Gal4N 蛋白。 9. 如申請專利範圍第8項所述之一種細胞,其中之啟動 0 子為胸腺嘧啶激酶啟動子、巨細胞病毒啟動子或羅氏 肉瘤病毒啟動子,且其轉譯抑制區為Max結合蛋白 (Mad )或A酸與甲狀腺激素受器之靜止介質(SMRT ) 區0 10·申請專利範圍第6項所述之一種細胞,其中之「餌」 多肽鏈與「獵物」多肽鏈係藉由一可與「餌」多肽鏈 或「獵物」多肽鏈結合的化合物來阻止其彼此間的交 互作用。 Φ Π·如申請專利範圍第6項所述之一種細胞,其中之細胞 為一種哺乳動物細胞。 12·如申請專利範圍第11項所述之一種細胞,其中之啟動 子為胸腺喷咬激酶啟動子、巨細胞病毒啟動子成羅氏 24 200307040 γ瘤病毒啟動子,且其轉譯抑制區為Max結合蛋白 (Mad )或A酸與甲狀腺激素受器之靜止介質(smrT ) 〇 13.如申請專利範圍帛11項所述之一種細胞,其中之蛋白 質接合區為GaM蛋白結合位,且其DNA結合區為Gal4N 蛋白。 14. 如申明專利範圍帛13項所述之一種細胞,其中之啟動 φ 子為胸腺嘴咬激酶啟動子、巨細胞病毒啟動子或羅氏 肉瘤病毒啟動子,且其轉譯抑制區為Max結合蛋白 (厘以)或八酸與甲狀腺激素受器之靜止介質(31^^) 15. 如申請專利範圍第U項所述之一種細胞,其中之「_」 多肽鏈與「獵物」多肽鏈係藉由一可與「餌」多肽鏈 或「獄物」多肤鏈結合的化合物來阻止其彼此間之交 互作用。 痛 16· 一種可辨認出會抑制「餌」多肽鏈與「獵物」多肽鏈 間父互作用之化合物的方法,其係包含提供如申請專 利範圍第1項所述之一種分裂雜合系統,及以化合物 接觸該系統,其中倘若報導基因的表現程度在有化合 物時比沒有化合物時多,表示該化合物會干擾「輯 25 200307040 多肽鏈與「獵物」多肽鏈間的交互作用。 17. 一種可辨認出會抑制「餌」多肽鏈與「獵物」多肽鏈 間交互作用之化合物的方法,其係包含提供如申請專 利範圍第6項所述之一種細胞,及以化合物接觸該細 胞,其中倘若報導基因的表現程度在有化合物時比沒 有化合物時多,表示該化合物會干擾「_」多肽鏈與 「獵物」多肽鏈間的交互作用。The third nucleic acid, which can encode a second recombinant polypeptide chain, includes (1) a transcriptional repression region, and (2) a "prey" polypeptide chain that can be combined with a "bait" polypeptide chain; wherein The interaction between the "bait" polypeptide chain and the "prey" polypeptide chain will inhibit the performance of the reporter gene, and the interaction between the "bait" polypeptide chain and the "prey" polypeptide chain will interfere with the performance of the reporter gene. . 23 200307040 7. The cell according to item 6 of the scope of the patent application, wherein the promoter is a thymic thymus kinase (TK) promoter, a cytomegalovirus (CMV) promoter, or a Roche sarcoma virus (RSV) promoter . 8. A cell according to item 6 of the scope of the patent application, wherein the protein-binding region is a Gal4 protein binding site and the DNA-binding region thereof is a Gal4N protein. 9. A cell as described in item 8 of the scope of the patent application, wherein the promoter 0 is a thymine kinase promoter, a cytomegalovirus promoter, or a Roche sarcoma virus promoter, and its translation inhibition region is a Max binding protein (Mad ) Or A acid and thyroid hormone receptor stationary medium (SMRT) zone 0 10 · A cell described in item 6 of the scope of the patent application, in which the "bait" polypeptide chain and the "prey" polypeptide chain are Compounds bound by "bait" polypeptide chains or "prey" polypeptide chains to prevent their interaction with each other. Φ Π. A cell according to item 6 of the patent application, wherein the cell is a mammalian cell. 12. A cell according to item 11 in the scope of application for a patent, wherein the promoter is a thymus jet kinase promoter, a cytomegalovirus promoter, and a Roche 24 200307040 gamma tumor virus promoter, and its translation inhibition region is Max binding Protein (Mad) or A-acid and thyroid hormone receptor stationary medium (smrT) 〇13. A cell as described in the scope of patent application 帛 11, wherein the protein junction region is a GaM protein binding site, and its DNA binding region For Gal4N protein. 14. A cell according to item 13 of the declared patent, wherein the promoter φ promoter is a thymus-mouth biting kinase promoter, a cytomegalovirus promoter, or a Roche sarcoma virus promoter, and its translation inhibition region is a Max binding protein ( Centrifuge) or octanoic acid and thyroid hormone receptor stationary medium (31 ^^) 15. A cell as described in item U of the patent application, wherein the "_" polypeptide chain and the "prey" polypeptide chain are A compound that can bind to a "bait" polypeptide chain or a "prison" polypeptide chain to prevent their interaction with each other. Pain 16. A method for recognizing a compound that inhibits parental interaction between a "bait" polypeptide chain and a "prey" polypeptide chain, which comprises providing a cleavage hybrid system as described in item 1 of the scope of the patent application, and The system is contacted with a compound, and if the expression level of the reported gene is more when there is a compound than when there is no compound, it means that the compound will interfere with the interaction between the "chain 25" and "prey" polypeptide chains. 17. A method for identifying a compound capable of inhibiting the interaction between a "bait" polypeptide chain and a "prey" polypeptide chain, comprising providing a cell as described in item 6 of the patent application scope, and contacting the cell with the compound Among them, if the degree of expression of the reported gene is greater when there is a compound than when there is no compound, it means that the compound will interfere with the interaction between the "_" polypeptide chain and the "prey" polypeptide chain. 1 8.如申請專利範圍第1 7項所述之一種方法,其中之細胞 為一種哺乳動物細胞。18. A method as described in item 17 of the scope of patent application, wherein the cell is a mammalian cell. 26 200307040 柒、指定代表圖: (一) 、本案指定代表圖為:第 圖。 (二) 、本代表圖之元件代表符號簡單說明: 無指定代表圖26 200307040 (1) Designated representative map: (1) The designated representative map in this case is: Figure 2. (2) Brief description of the component representative symbols of this representative map: No designated representative map 捌、本案若有化學式時,請揭示最能顯示 發明特徵的化學式:捌 If there is a chemical formula in this case, please disclose the chemical formula that can best show the characteristics of the invention: 無代表化學式 4No representative chemical formula 4
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