SG11202109079YA - Rapid detection of gene fusions - Google Patents

Rapid detection of gene fusions

Info

Publication number
SG11202109079YA
SG11202109079YA SG11202109079YA SG11202109079YA SG11202109079YA SG 11202109079Y A SG11202109079Y A SG 11202109079YA SG 11202109079Y A SG11202109079Y A SG 11202109079YA SG 11202109079Y A SG11202109079Y A SG 11202109079YA SG 11202109079Y A SG11202109079Y A SG 11202109079YA
Authority
SG
Singapore
Prior art keywords
rapid detection
gene fusions
fusions
gene
rapid
Prior art date
Application number
SG11202109079YA
Inventor
Viraj Deshpande
Johann Felix Wilhelm Schlesinger
Sean Truong
John Cooper Roddey
Michael Ruehle
Severine Catreux
Rami Mehio
Original Assignee
Illumina Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Illumina Inc filed Critical Illumina Inc
Publication of SG11202109079YA publication Critical patent/SG11202109079YA/en

Links

Classifications

    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/10Sequence alignment; Homology search
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • G16B40/20Supervised data analysis
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • GPHYSICS
    • G06COMPUTING; CALCULATING OR COUNTING
    • G06FELECTRIC DIGITAL DATA PROCESSING
    • G06F18/00Pattern recognition
    • G06F18/20Analysing
    • G06F18/25Fusion techniques
    • G06F18/251Fusion techniques of input or preprocessed data
    • GPHYSICS
    • G06COMPUTING; CALCULATING OR COUNTING
    • G06NCOMPUTING ARRANGEMENTS BASED ON SPECIFIC COMPUTATIONAL MODELS
    • G06N20/00Machine learning
    • GPHYSICS
    • G06COMPUTING; CALCULATING OR COUNTING
    • G06NCOMPUTING ARRANGEMENTS BASED ON SPECIFIC COMPUTATIONAL MODELS
    • G06N3/00Computing arrangements based on biological models
    • G06N3/02Neural networks
    • G06N3/08Learning methods
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding

Landscapes

  • Engineering & Computer Science (AREA)
  • Physics & Mathematics (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Theoretical Computer Science (AREA)
  • Health & Medical Sciences (AREA)
  • Medical Informatics (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Health & Medical Sciences (AREA)
  • Biophysics (AREA)
  • Data Mining & Analysis (AREA)
  • Evolutionary Biology (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Biotechnology (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Software Systems (AREA)
  • Artificial Intelligence (AREA)
  • Evolutionary Computation (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Chemical & Material Sciences (AREA)
  • Analytical Chemistry (AREA)
  • Computer Vision & Pattern Recognition (AREA)
  • General Physics & Mathematics (AREA)
  • General Engineering & Computer Science (AREA)
  • Computing Systems (AREA)
  • Molecular Biology (AREA)
  • Mathematical Physics (AREA)
  • Bioethics (AREA)
  • Databases & Information Systems (AREA)
  • Epidemiology (AREA)
  • Public Health (AREA)
  • Genetics & Genomics (AREA)
  • Biomedical Technology (AREA)
  • Computational Linguistics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
SG11202109079YA 2019-12-05 2020-12-04 Rapid detection of gene fusions SG11202109079YA (en)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US201962944304P 2019-12-05 2019-12-05
PCT/US2020/063496 WO2021113779A1 (en) 2019-12-05 2020-12-04 Rapid detection of gene fusions

Publications (1)

Publication Number Publication Date
SG11202109079YA true SG11202109079YA (en) 2021-09-29

Family

ID=74004162

Family Applications (1)

Application Number Title Priority Date Filing Date
SG11202109079YA SG11202109079YA (en) 2019-12-05 2020-12-04 Rapid detection of gene fusions

Country Status (12)

Country Link
US (1) US20210193254A1 (en)
EP (1) EP4070320A1 (en)
JP (1) JP2023503739A (en)
KR (1) KR20220107117A (en)
CN (1) CN113574603A (en)
AU (1) AU2020398180A1 (en)
BR (1) BR112021018933A2 (en)
CA (1) CA3131487A1 (en)
IL (1) IL286129A (en)
MX (1) MX2021012019A (en)
SG (1) SG11202109079YA (en)
WO (1) WO2021113779A1 (en)

Families Citing this family (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2024086499A1 (en) * 2022-10-17 2024-04-25 University Of Washington Systems and methods for detecting fusion genes from sequencing data
CN115662520B (en) * 2022-10-27 2023-04-14 黑龙江金域医学检验实验室有限公司 Detection method of BCR/ABL1 fusion gene and related equipment

Family Cites Families (10)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
EP3169806B1 (en) * 2014-07-18 2019-05-01 Life Technologies Corporation Systems and methods for detecting structural variants
CN106795568A (en) * 2014-10-10 2017-05-31 因维蒂公司 Method, system and the process of the DE NOVO assemblings of read is sequenced
US10354747B1 (en) * 2016-05-06 2019-07-16 Verily Life Sciences Llc Deep learning analysis pipeline for next generation sequencing
BR112019009830A2 (en) * 2016-11-16 2019-08-13 Illumina Inc Realignment methods for reading sequencing data
US10964410B2 (en) * 2017-05-25 2021-03-30 Koninklijke Philips N.V. System and method for detecting gene fusion
WO2018231860A1 (en) * 2017-06-12 2018-12-20 Grail, Inc. Alignment free filtering for identifying fusions
CN107267646A (en) * 2017-08-02 2017-10-20 广东国盛医学科技有限公司 A kind of polygenes fusion detection method based on next generation's sequencing
US20200105373A1 (en) * 2018-09-28 2020-04-02 10X Genomics, Inc. Systems and methods for cellular analysis using nucleic acid sequencing
EP4369356A2 (en) * 2018-11-30 2024-05-15 Caris MPI, Inc. Next-generation molecular profiling
CN110322925B (en) * 2019-07-18 2021-09-03 杭州纽安津生物科技有限公司 Method for predicting generation of neoantigen by fusion gene

Also Published As

Publication number Publication date
JP2023503739A (en) 2023-02-01
EP4070320A1 (en) 2022-10-12
KR20220107117A (en) 2022-08-02
AU2020398180A1 (en) 2021-09-16
US20210193254A1 (en) 2021-06-24
WO2021113779A1 (en) 2021-06-10
CA3131487A1 (en) 2021-06-10
IL286129A (en) 2021-10-31
BR112021018933A2 (en) 2022-06-21
MX2021012019A (en) 2021-10-26
CN113574603A (en) 2021-10-29

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