SG11202102591TA - Fpga-based resequencing analysis method and device - Google Patents
Fpga-based resequencing analysis method and deviceInfo
- Publication number
- SG11202102591TA SG11202102591TA SG11202102591TA SG11202102591TA SG11202102591TA SG 11202102591T A SG11202102591T A SG 11202102591TA SG 11202102591T A SG11202102591T A SG 11202102591TA SG 11202102591T A SG11202102591T A SG 11202102591TA SG 11202102591T A SG11202102591T A SG 11202102591TA
- Authority
- SG
- Singapore
- Prior art keywords
- fpga
- analysis method
- based resequencing
- resequencing analysis
- resequencing
- Prior art date
Links
Classifications
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
- G16B30/10—Sequence alignment; Homology search
-
- G—PHYSICS
- G06—COMPUTING; CALCULATING OR COUNTING
- G06F—ELECTRIC DIGITAL DATA PROCESSING
- G06F30/00—Computer-aided design [CAD]
- G06F30/30—Circuit design
- G06F30/32—Circuit design at the digital level
- G06F30/33—Design verification, e.g. functional simulation or model checking
- G06F30/3308—Design verification, e.g. functional simulation or model checking using simulation
- G06F30/331—Design verification, e.g. functional simulation or model checking using simulation with hardware acceleration, e.g. by using field programmable gate array [FPGA] or emulation
-
- G—PHYSICS
- G06—COMPUTING; CALCULATING OR COUNTING
- G06F—ELECTRIC DIGITAL DATA PROCESSING
- G06F30/00—Computer-aided design [CAD]
- G06F30/20—Design optimisation, verification or simulation
-
- G—PHYSICS
- G06—COMPUTING; CALCULATING OR COUNTING
- G06F—ELECTRIC DIGITAL DATA PROCESSING
- G06F9/00—Arrangements for program control, e.g. control units
- G06F9/06—Arrangements for program control, e.g. control units using stored programs, i.e. using an internal store of processing equipment to receive or retain programs
- G06F9/30—Arrangements for executing machine instructions, e.g. instruction decode
- G06F9/30098—Register arrangements
- G06F9/3012—Organisation of register space, e.g. banked or distributed register file
- G06F9/30123—Organisation of register space, e.g. banked or distributed register file according to context, e.g. thread buffers
-
- G—PHYSICS
- G06—COMPUTING; CALCULATING OR COUNTING
- G06F—ELECTRIC DIGITAL DATA PROCESSING
- G06F9/00—Arrangements for program control, e.g. control units
- G06F9/06—Arrangements for program control, e.g. control units using stored programs, i.e. using an internal store of processing equipment to receive or retain programs
- G06F9/30—Arrangements for executing machine instructions, e.g. instruction decode
- G06F9/34—Addressing or accessing the instruction operand or the result ; Formation of operand address; Addressing modes
- G06F9/345—Addressing or accessing the instruction operand or the result ; Formation of operand address; Addressing modes of multiple operands or results
-
- G—PHYSICS
- G06—COMPUTING; CALCULATING OR COUNTING
- G06F—ELECTRIC DIGITAL DATA PROCESSING
- G06F9/00—Arrangements for program control, e.g. control units
- G06F9/06—Arrangements for program control, e.g. control units using stored programs, i.e. using an internal store of processing equipment to receive or retain programs
- G06F9/46—Multiprogramming arrangements
- G06F9/48—Program initiating; Program switching, e.g. by interrupt
- G06F9/4806—Task transfer initiation or dispatching
- G06F9/4843—Task transfer initiation or dispatching by program, e.g. task dispatcher, supervisor, operating system
- G06F9/4881—Scheduling strategies for dispatcher, e.g. round robin, multi-level priority queues
-
- G—PHYSICS
- G06—COMPUTING; CALCULATING OR COUNTING
- G06N—COMPUTING ARRANGEMENTS BASED ON SPECIFIC COMPUTATIONAL MODELS
- G06N3/00—Computing arrangements based on biological models
- G06N3/12—Computing arrangements based on biological models using genetic models
- G06N3/126—Evolutionary algorithms, e.g. genetic algorithms or genetic programming
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
- G16B20/20—Allele or variant detection, e.g. single nucleotide polymorphism [SNP] detection
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
Landscapes
- Engineering & Computer Science (AREA)
- Physics & Mathematics (AREA)
- Theoretical Computer Science (AREA)
- Life Sciences & Earth Sciences (AREA)
- Health & Medical Sciences (AREA)
- Software Systems (AREA)
- Biophysics (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Physics & Mathematics (AREA)
- General Engineering & Computer Science (AREA)
- Bioinformatics & Computational Biology (AREA)
- Evolutionary Biology (AREA)
- Computer Hardware Design (AREA)
- General Health & Medical Sciences (AREA)
- Medical Informatics (AREA)
- Evolutionary Computation (AREA)
- Spectroscopy & Molecular Physics (AREA)
- Biotechnology (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Chemical & Material Sciences (AREA)
- Analytical Chemistry (AREA)
- Geometry (AREA)
- Molecular Biology (AREA)
- Genetics & Genomics (AREA)
- Artificial Intelligence (AREA)
- Data Mining & Analysis (AREA)
- Computing Systems (AREA)
- Computational Linguistics (AREA)
- Mathematical Physics (AREA)
- Biomedical Technology (AREA)
- Physiology (AREA)
- Bioethics (AREA)
- Computer Vision & Pattern Recognition (AREA)
- Databases & Information Systems (AREA)
- Epidemiology (AREA)
- Public Health (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Management, Administration, Business Operations System, And Electronic Commerce (AREA)
- Apparatus Associated With Microorganisms And Enzymes (AREA)
Applications Claiming Priority (1)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
PCT/CN2018/111357 WO2020082224A1 (en) | 2018-10-23 | 2018-10-23 | Fpga-based resequencing analysis method and device |
Publications (1)
Publication Number | Publication Date |
---|---|
SG11202102591TA true SG11202102591TA (en) | 2021-04-29 |
Family
ID=70330861
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
SG11202102591TA SG11202102591TA (en) | 2018-10-23 | 2018-10-23 | Fpga-based resequencing analysis method and device |
Country Status (7)
Country | Link |
---|---|
US (1) | US11836430B2 (en) |
EP (1) | EP3852111A4 (en) |
JP (1) | JP7334244B2 (en) |
KR (1) | KR20210091126A (en) |
CN (1) | CN113168888A (en) |
SG (1) | SG11202102591TA (en) |
WO (1) | WO2020082224A1 (en) |
Families Citing this family (1)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN115691672B (en) * | 2022-12-20 | 2023-06-16 | 臻和(北京)生物科技有限公司 | Base quality value correction method and device for sequencing platform characteristics, electronic equipment and storage medium |
Family Cites Families (12)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
JP2014516514A (en) * | 2011-04-14 | 2014-07-17 | コンプリート・ジェノミックス・インコーポレイテッド | Processing and analysis of complex nucleic acid sequence data |
EP2634717A2 (en) * | 2012-02-28 | 2013-09-04 | Koninklijke Philips Electronics N.V. | Compact next generation sequencing dataset and efficient sequence processing using same |
US9600625B2 (en) | 2012-04-23 | 2017-03-21 | Bina Technologies, Inc. | Systems and methods for processing nucleic acid sequence data |
US9679104B2 (en) | 2013-01-17 | 2017-06-13 | Edico Genome, Corp. | Bioinformatics systems, apparatuses, and methods executed on an integrated circuit processing platform |
US9436565B2 (en) * | 2013-07-04 | 2016-09-06 | Altera Corporation | Non-intrusive monitoring and control of integrated circuits |
CN105631239B (en) * | 2014-10-30 | 2018-08-17 | 国际商业机器公司 | Method and apparatus for managing gene order |
CN104462211B (en) * | 2014-11-04 | 2018-01-02 | 北京诺禾致源科技股份有限公司 | The processing method and processing unit of weight sequencing data |
AU2015349725B2 (en) | 2014-11-21 | 2022-02-03 | Research Institute At Nationwide Children's Hospital | Parallel-processing systems and methods for highly scalable analysis of biological sequence data |
US10192026B2 (en) | 2015-03-05 | 2019-01-29 | Seven Bridges Genomics Inc. | Systems and methods for genomic pattern analysis |
US20170270245A1 (en) * | 2016-01-11 | 2017-09-21 | Edico Genome, Corp. | Bioinformatics systems, apparatuses, and methods for performing secondary and/or tertiary processing |
CN107194204A (en) * | 2017-05-22 | 2017-09-22 | 人和未来生物科技(长沙)有限公司 | A kind of sequencing data of whole genome calculates deciphering method |
CN107609350B (en) | 2017-09-08 | 2020-04-03 | 厦门极元科技有限公司 | Data processing method of second-generation sequencing data analysis platform |
-
2018
- 2018-10-23 JP JP2021519716A patent/JP7334244B2/en active Active
- 2018-10-23 KR KR1020217010322A patent/KR20210091126A/en not_active Application Discontinuation
- 2018-10-23 WO PCT/CN2018/111357 patent/WO2020082224A1/en active Application Filing
- 2018-10-23 CN CN201880095562.5A patent/CN113168888A/en active Pending
- 2018-10-23 EP EP18937933.2A patent/EP3852111A4/en active Pending
- 2018-10-23 SG SG11202102591TA patent/SG11202102591TA/en unknown
- 2018-10-23 US US17/275,075 patent/US11836430B2/en active Active
Also Published As
Publication number | Publication date |
---|---|
WO2020082224A1 (en) | 2020-04-30 |
CN113168888A (en) | 2021-07-23 |
EP3852111A1 (en) | 2021-07-21 |
EP3852111A4 (en) | 2022-04-20 |
US20220058321A1 (en) | 2022-02-24 |
JP7334244B2 (en) | 2023-08-28 |
JP2022504611A (en) | 2022-01-13 |
US11836430B2 (en) | 2023-12-05 |
KR20210091126A (en) | 2021-07-21 |
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