SG11202010040YA - Fluorescence image registration method, gene sequencing instrument and system, and storage medium - Google Patents

Fluorescence image registration method, gene sequencing instrument and system, and storage medium

Info

Publication number
SG11202010040YA
SG11202010040YA SG11202010040YA SG11202010040YA SG11202010040YA SG 11202010040Y A SG11202010040Y A SG 11202010040YA SG 11202010040Y A SG11202010040Y A SG 11202010040YA SG 11202010040Y A SG11202010040Y A SG 11202010040YA SG 11202010040Y A SG11202010040Y A SG 11202010040YA
Authority
SG
Singapore
Prior art keywords
storage medium
image registration
fluorescence image
registration method
gene sequencing
Prior art date
Application number
SG11202010040YA
Inventor
Mei Li
Yuxiang Li
Yiwen Liu
Original Assignee
Mgi Tech Co Ltd
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Mgi Tech Co Ltd filed Critical Mgi Tech Co Ltd
Publication of SG11202010040YA publication Critical patent/SG11202010040YA/en

Links

Classifications

    • G—PHYSICS
    • G06—COMPUTING; CALCULATING OR COUNTING
    • G06T—IMAGE DATA PROCESSING OR GENERATION, IN GENERAL
    • G06T7/00—Image analysis
    • G06T7/30—Determination of transform parameters for the alignment of images, i.e. image registration
    • G—PHYSICS
    • G06—COMPUTING; CALCULATING OR COUNTING
    • G06T—IMAGE DATA PROCESSING OR GENERATION, IN GENERAL
    • G06T7/00—Image analysis
    • G06T7/30—Determination of transform parameters for the alignment of images, i.e. image registration
    • G06T7/33—Determination of transform parameters for the alignment of images, i.e. image registration using feature-based methods
    • G—PHYSICS
    • G06—COMPUTING; CALCULATING OR COUNTING
    • G06T—IMAGE DATA PROCESSING OR GENERATION, IN GENERAL
    • G06T7/00—Image analysis
    • G06T7/30—Determination of transform parameters for the alignment of images, i.e. image registration
    • G06T7/33—Determination of transform parameters for the alignment of images, i.e. image registration using feature-based methods
    • G06T7/337—Determination of transform parameters for the alignment of images, i.e. image registration using feature-based methods involving reference images or patches
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869—Methods for sequencing
    • C—CHEMISTRY; METALLURGY
    • C40—COMBINATORIAL TECHNOLOGY
    • C40B—COMBINATORIAL CHEMISTRY; LIBRARIES, e.g. CHEMICAL LIBRARIES
    • C40B20/00—Methods specially adapted for identifying library members
    • C40B20/02—Identifying library members by their fixed physical location on a support or substrate
    • G—PHYSICS
    • G06—COMPUTING; CALCULATING OR COUNTING
    • G06T—IMAGE DATA PROCESSING OR GENERATION, IN GENERAL
    • G06T7/00—Image analysis
    • G06T7/0002—Inspection of images, e.g. flaw detection
    • G06T7/0012—Biomedical image inspection
    • G—PHYSICS
    • G06—COMPUTING; CALCULATING OR COUNTING
    • G06T—IMAGE DATA PROCESSING OR GENERATION, IN GENERAL
    • G06T7/00—Image analysis
    • G06T7/10—Segmentation; Edge detection
    • G06T7/11—Region-based segmentation
    • G—PHYSICS
    • G06—COMPUTING; CALCULATING OR COUNTING
    • G06T—IMAGE DATA PROCESSING OR GENERATION, IN GENERAL
    • G06T7/00—Image analysis
    • G06T7/70—Determining position or orientation of objects or cameras
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B25/00—ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2563/00—Nucleic acid detection characterized by the use of physical, structural and functional properties
    • C12Q2563/107—Nucleic acid detection characterized by the use of physical, structural and functional properties fluorescence
    • G—PHYSICS
    • G06—COMPUTING; CALCULATING OR COUNTING
    • G06T—IMAGE DATA PROCESSING OR GENERATION, IN GENERAL
    • G06T2207/00—Indexing scheme for image analysis or image enhancement
    • G06T2207/10—Image acquisition modality
    • G06T2207/10056—Microscopic image
    • G—PHYSICS
    • G06—COMPUTING; CALCULATING OR COUNTING
    • G06T—IMAGE DATA PROCESSING OR GENERATION, IN GENERAL
    • G06T2207/00—Indexing scheme for image analysis or image enhancement
    • G06T2207/10—Image acquisition modality
    • G06T2207/10064—Fluorescence image
    • G—PHYSICS
    • G06—COMPUTING; CALCULATING OR COUNTING
    • G06T—IMAGE DATA PROCESSING OR GENERATION, IN GENERAL
    • G06T2207/00—Indexing scheme for image analysis or image enhancement
    • G06T2207/20—Special algorithmic details
    • G06T2207/20021—Dividing image into blocks, subimages or windows
    • G—PHYSICS
    • G06—COMPUTING; CALCULATING OR COUNTING
    • G06T—IMAGE DATA PROCESSING OR GENERATION, IN GENERAL
    • G06T2207/00—Indexing scheme for image analysis or image enhancement
    • G06T2207/30—Subject of image; Context of image processing
    • G06T2207/30004—Biomedical image processing
    • G06T2207/30072—Microarray; Biochip, DNA array; Well plate
    • G—PHYSICS
    • G06—COMPUTING; CALCULATING OR COUNTING
    • G06T—IMAGE DATA PROCESSING OR GENERATION, IN GENERAL
    • G06T2207/00—Indexing scheme for image analysis or image enhancement
    • G06T2207/30—Subject of image; Context of image processing
    • G06T2207/30241—Trajectory

Landscapes

  • Engineering & Computer Science (AREA)
  • Physics & Mathematics (AREA)
  • Theoretical Computer Science (AREA)
  • Computer Vision & Pattern Recognition (AREA)
  • General Physics & Mathematics (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Organic Chemistry (AREA)
  • General Health & Medical Sciences (AREA)
  • Molecular Biology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Medical Informatics (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Wood Science & Technology (AREA)
  • Biophysics (AREA)
  • Biotechnology (AREA)
  • Genetics & Genomics (AREA)
  • Analytical Chemistry (AREA)
  • Biochemistry (AREA)
  • Zoology (AREA)
  • Nuclear Medicine, Radiotherapy & Molecular Imaging (AREA)
  • Radiology & Medical Imaging (AREA)
  • Quality & Reliability (AREA)
  • Evolutionary Biology (AREA)
  • General Engineering & Computer Science (AREA)
  • Immunology (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Microbiology (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • General Chemical & Material Sciences (AREA)
  • Medicinal Chemistry (AREA)
  • Investigating, Analyzing Materials By Fluorescence Or Luminescence (AREA)
  • Image Analysis (AREA)
SG11202010040YA 2018-04-10 2018-04-10 Fluorescence image registration method, gene sequencing instrument and system, and storage medium SG11202010040YA (en)

Applications Claiming Priority (1)

Application Number Priority Date Filing Date Title
PCT/CN2018/082578 WO2019196019A1 (en) 2018-04-10 2018-04-10 Fluorescence image registration method, gene sequencing instrument and system, and storage medium

Publications (1)

Publication Number Publication Date
SG11202010040YA true SG11202010040YA (en) 2020-11-27

Family

ID=68162773

Family Applications (1)

Application Number Title Priority Date Filing Date
SG11202010040YA SG11202010040YA (en) 2018-04-10 2018-04-10 Fluorescence image registration method, gene sequencing instrument and system, and storage medium

Country Status (11)

Country Link
US (2) US11682125B2 (en)
EP (1) EP3779868B1 (en)
JP (1) JP7072081B2 (en)
KR (1) KR102504987B1 (en)
CN (1) CN111971711A (en)
AU (1) AU2018418609B2 (en)
BR (1) BR112020020949A2 (en)
CA (1) CA3096723C (en)
RU (1) RU2749893C1 (en)
SG (1) SG11202010040YA (en)
WO (1) WO2019196019A1 (en)

Families Citing this family (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN113255649B (en) * 2021-06-21 2023-09-19 北博（厦门）智能科技有限公司 Image segmentation frame selection method and terminal based on image recognition
WO2024001051A1 (en) * 2022-06-29 2024-01-04 深圳华大生命科学研究院 Spatial omics single cell data acquisition method and apparatus, and electronic device
CN115331735B (en) * 2022-10-11 2023-03-17 青岛百创智能制造技术有限公司 Chip decoding method and device
CN117237441B (en) * 2023-11-10 2024-01-30 湖南科天健光电技术有限公司 Sub-pixel positioning method, sub-pixel positioning system, electronic equipment and medium

Family Cites Families (17)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
KR100463336B1 (en) * 2001-10-11 2004-12-23 (주)가이아진 System for image analysis of biochip and method thereof
WO2004047007A1 (en) * 2002-11-15 2004-06-03 Bioarray Solutions, Ltd. Analysis, secure access to, and transmission of array images
US20050281462A1 (en) * 2004-06-16 2005-12-22 Jayati Ghosh System and method of automated processing of multiple microarray images
US8774494B2 (en) * 2010-04-30 2014-07-08 Complete Genomics, Inc. Method and system for accurate alignment and registration of array for DNA sequencing
US9671344B2 (en) * 2010-08-31 2017-06-06 Complete Genomics, Inc. High-density biochemical array chips with asynchronous tracks for alignment correction by moiré averaging
JP5822664B2 (en) * 2011-11-11 2015-11-24 株式会社Pfu Image processing apparatus, straight line detection method, and computer program
CN102821238B (en) * 2012-03-19 2015-07-22 北京泰邦天地科技有限公司 Wide-field ultra-high-resolution imaging system
CN103150550B (en) * 2013-02-05 2015-10-28 长安大学 A kind of road pedestrian event detection method based on gripper path analysis
US9481903B2 (en) * 2013-03-13 2016-11-01 Roche Molecular Systems, Inc. Systems and methods for detection of cells using engineered transduction particles
CN105531377A (en) * 2013-07-30 2016-04-27 哈佛学院院长及董事 Quantitative dna-based imaging and super-resolution imaging
US9536334B2 (en) * 2013-10-18 2017-01-03 Schlumberger Technology Corporation Image strip display
CN105550990B (en) 2015-12-10 2017-07-28 北京中科紫鑫科技有限责任公司 A kind of DNA image processing method and processing device based on Fourier's registration
CN105427327B (en) * 2015-12-10 2017-05-31 北京中科紫鑫科技有限责任公司 The method for registering images and device of a kind of DNA sequencing
CN105427328B (en) 2015-12-10 2017-05-31 北京中科紫鑫科技有限责任公司 The mutual information method for registering images and device of a kind of DNA sequencing
CN105303187B (en) * 2015-12-10 2017-03-15 北京中科紫鑫科技有限责任公司 A kind of image-recognizing method of DNA sequencing and device
JP6687039B2 (en) * 2016-02-05 2020-04-22 株式会社リコー Object detection device, device control system, imaging device, object detection method, and program
CN107730541A (en) * 2016-08-12 2018-02-23 广州康昕瑞基因健康科技有限公司 Method for registering images and system and image taking alignment method and system

Also Published As

Publication number Publication date
EP3779868A1 (en) 2021-02-17
AU2018418609B2 (en) 2021-10-07
US20230298188A1 (en) 2023-09-21
AU2018418609A1 (en) 2020-11-12
US11682125B2 (en) 2023-06-20
EP3779868A4 (en) 2021-11-17
JP2021517701A (en) 2021-07-26
KR102504987B1 (en) 2023-02-28
BR112020020949A2 (en) 2021-03-02
CA3096723A1 (en) 2019-10-17
RU2749893C1 (en) 2021-06-18
KR20200142040A (en) 2020-12-21
JP7072081B2 (en) 2022-05-19
WO2019196019A1 (en) 2019-10-17
US20210019895A1 (en) 2021-01-21
EP3779868B1 (en) 2024-05-08
CN111971711A (en) 2020-11-20
CA3096723C (en) 2023-10-24

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