SG11201913009RA - Variant classifier based on deep neural networks - Google Patents
Variant classifier based on deep neural networksInfo
- Publication number
- SG11201913009RA SG11201913009RA SG11201913009RA SG11201913009RA SG11201913009RA SG 11201913009R A SG11201913009R A SG 11201913009RA SG 11201913009R A SG11201913009R A SG 11201913009RA SG 11201913009R A SG11201913009R A SG 11201913009RA SG 11201913009R A SG11201913009R A SG 11201913009RA
- Authority
- SG
- Singapore
- Prior art keywords
- neural networks
- deep neural
- classifier based
- variant classifier
- variant
- Prior art date
Links
Classifications
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
-
- G—PHYSICS
- G06—COMPUTING; CALCULATING OR COUNTING
- G06F—ELECTRIC DIGITAL DATA PROCESSING
- G06F18/00—Pattern recognition
- G06F18/20—Analysing
- G06F18/24—Classification techniques
-
- G—PHYSICS
- G06—COMPUTING; CALCULATING OR COUNTING
- G06N—COMPUTING ARRANGEMENTS BASED ON SPECIFIC COMPUTATIONAL MODELS
- G06N3/00—Computing arrangements based on biological models
- G06N3/02—Neural networks
- G06N3/04—Architecture, e.g. interconnection topology
- G06N3/045—Combinations of networks
-
- G—PHYSICS
- G06—COMPUTING; CALCULATING OR COUNTING
- G06N—COMPUTING ARRANGEMENTS BASED ON SPECIFIC COMPUTATIONAL MODELS
- G06N3/00—Computing arrangements based on biological models
- G06N3/02—Neural networks
- G06N3/04—Architecture, e.g. interconnection topology
- G06N3/048—Activation functions
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
- G16B20/20—Allele or variant detection, e.g. single nucleotide polymorphism [SNP] detection
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
- G16B30/10—Sequence alignment; Homology search
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
- G16B40/20—Supervised data analysis
Landscapes
- Engineering & Computer Science (AREA)
- Physics & Mathematics (AREA)
- Life Sciences & Earth Sciences (AREA)
- Health & Medical Sciences (AREA)
- Theoretical Computer Science (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Medical Informatics (AREA)
- General Health & Medical Sciences (AREA)
- Biophysics (AREA)
- Data Mining & Analysis (AREA)
- Bioinformatics & Computational Biology (AREA)
- Evolutionary Biology (AREA)
- Spectroscopy & Molecular Physics (AREA)
- Biotechnology (AREA)
- Artificial Intelligence (AREA)
- Evolutionary Computation (AREA)
- Molecular Biology (AREA)
- Software Systems (AREA)
- Chemical & Material Sciences (AREA)
- Analytical Chemistry (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Computer Vision & Pattern Recognition (AREA)
- Public Health (AREA)
- Epidemiology (AREA)
- Databases & Information Systems (AREA)
- Bioethics (AREA)
- Genetics & Genomics (AREA)
- General Physics & Mathematics (AREA)
- General Engineering & Computer Science (AREA)
- Computing Systems (AREA)
- Computational Linguistics (AREA)
- Biomedical Technology (AREA)
- Mathematical Physics (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Apparatus Associated With Microorganisms And Enzymes (AREA)
- Image Analysis (AREA)
Applications Claiming Priority (3)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US201862656741P | 2018-04-12 | 2018-04-12 | |
NL2020861A NL2020861B1 (en) | 2018-04-12 | 2018-05-02 | Variant classifier based on deep neural networks |
PCT/US2019/027362 WO2019200338A1 (en) | 2018-04-12 | 2019-04-12 | Variant classifier based on deep neural networks |
Publications (1)
Publication Number | Publication Date |
---|---|
SG11201913009RA true SG11201913009RA (en) | 2020-01-30 |
Family
ID=62218283
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
SG11201913009RA SG11201913009RA (en) | 2018-04-12 | 2019-04-12 | Variant classifier based on deep neural networks |
Country Status (10)
Country | Link |
---|---|
EP (1) | EP3622524A1 (en) |
JP (3) | JP6907344B2 (en) |
KR (3) | KR102448484B1 (en) |
CN (1) | CN110832597A (en) |
AU (3) | AU2019253021A1 (en) |
CA (1) | CA3065784A1 (en) |
IL (1) | IL271092A (en) |
NL (1) | NL2020861B1 (en) |
NZ (1) | NZ759881A (en) |
SG (1) | SG11201913009RA (en) |
Families Citing this family (20)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN111402951B (en) * | 2020-03-17 | 2022-07-12 | 至本医疗科技(上海)有限公司 | Copy number variation prediction method, device, computer device and storage medium |
CN111584002B (en) * | 2020-05-22 | 2022-04-29 | 至本医疗科技(上海)有限公司 | Method, computing device and computer storage medium for detecting tumor mutational burden |
CN111755065B (en) * | 2020-06-15 | 2024-05-17 | 重庆邮电大学 | Protein conformation prediction acceleration method based on virtual network mapping and cloud parallel computing |
CN111933217B (en) * | 2020-06-17 | 2024-04-05 | 西安电子科技大学 | DNA motif length prediction method and prediction system based on deep learning |
CN112580288B (en) * | 2020-12-03 | 2022-04-12 | 复旦大学 | Semiconductor device characteristic modeling method and system based on multi-gradient neural network |
CN112528650B (en) * | 2020-12-18 | 2024-04-02 | 恩亿科(北京)数据科技有限公司 | Bert model pre-training method, system and computer equipment |
CN113055393B (en) * | 2021-03-26 | 2022-08-26 | 支付宝(杭州)信息技术有限公司 | Security service method, device and equipment |
CN113517021B (en) * | 2021-06-09 | 2022-09-06 | 海南精准医疗科技有限公司 | Cancer driver gene prediction method |
CN113658641A (en) * | 2021-07-20 | 2021-11-16 | 北京大学 | Phage classification method, device, equipment and storage medium |
CN113781551B (en) * | 2021-09-06 | 2023-10-31 | 中南民族大学 | Tea garden plant state monitoring and management system and method based on visual perception |
CN113876437B (en) * | 2021-09-13 | 2024-02-23 | 上海微创医疗机器人(集团)股份有限公司 | Storage medium, robot system, and computer device |
WO2023087277A1 (en) * | 2021-11-19 | 2023-05-25 | 深圳华大基因股份有限公司 | Sequence variation analysis method and system, and storage medium |
KR102544002B1 (en) * | 2022-03-10 | 2023-06-16 | 주식회사 아이엠비디엑스 | Method for Differentiating Somatic Mutation and Germline Mutation |
US20230410943A1 (en) * | 2022-05-05 | 2023-12-21 | Life Technologies Corporation | Methods for deep artificial neural networks for signal error correction |
CN115221871B (en) * | 2022-06-24 | 2024-02-20 | 毕开龙 | Multi-feature fusion English scientific literature keyword extraction method |
CN115019305B (en) * | 2022-08-08 | 2022-11-11 | 成都西交智汇大数据科技有限公司 | Method, device and equipment for identifying root tip cells and readable storage medium |
WO2024072164A1 (en) * | 2022-09-30 | 2024-04-04 | Seegene, Inc. | Methods and devices for predicting dimerization in nucleic acid amplification reaction |
WO2024086143A1 (en) * | 2022-10-17 | 2024-04-25 | Proteinea Inc. | Native expansion of a sparse training dataset into a dense training dataset for supervised training of a synonymous variant sequence generator |
CN115662520B (en) * | 2022-10-27 | 2023-04-14 | 黑龙江金域医学检验实验室有限公司 | Detection method of BCR/ABL1 fusion gene and related equipment |
CN116720123B (en) * | 2023-08-10 | 2023-11-28 | 中南大学 | Account identification method, account identification device, terminal equipment and medium |
Family Cites Families (9)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
SE9702008D0 (en) * | 1997-05-28 | 1997-05-28 | Pharmacia Biotech Ab | A method and a system for nucleic acid seouence analysis |
US10068053B2 (en) * | 2013-12-16 | 2018-09-04 | Complete Genomics, Inc. | Basecaller for DNA sequencing using machine learning |
EP3286677A4 (en) * | 2015-04-22 | 2019-07-24 | Genepeeks, Inc. | Device, system and method for assessing risk of variant-specific gene dysfunction |
US10185803B2 (en) * | 2015-06-15 | 2019-01-22 | Deep Genomics Incorporated | Systems and methods for classifying, prioritizing and interpreting genetic variants and therapies using a deep neural network |
CA2894317C (en) * | 2015-06-15 | 2023-08-15 | Deep Genomics Incorporated | Systems and methods for classifying, prioritizing and interpreting genetic variants and therapies using a deep neural network |
WO2017114810A1 (en) * | 2015-12-31 | 2017-07-06 | Vito Nv | Methods, controllers and systems for the control of distribution systems using a neural network arhcitecture |
CA3018186C (en) * | 2016-03-29 | 2023-06-13 | Regeneron Pharmaceuticals, Inc. | Genetic variant-phenotype analysis system and methods of use |
CA3030453C (en) * | 2016-07-04 | 2024-01-02 | Deep Genomics Incorporated | Systems and methods for generating and training convolutional neural networks using biological sequences and relevance scores derived from structural, biochemical, population and evolutionary data |
US20180060482A1 (en) * | 2016-08-31 | 2018-03-01 | Intermountain Invention Management, Llc | Interpreting genomic results and providing targeted treatment options in cancer patients |
-
2018
- 2018-05-02 NL NL2020861A patent/NL2020861B1/en active
-
2019
- 2019-04-12 KR KR1020227010332A patent/KR102448484B1/en active IP Right Grant
- 2019-04-12 JP JP2019567521A patent/JP6907344B2/en active Active
- 2019-04-12 SG SG11201913009RA patent/SG11201913009RA/en unknown
- 2019-04-12 KR KR1020197038076A patent/KR102381477B1/en active IP Right Grant
- 2019-04-12 EP EP19721182.4A patent/EP3622524A1/en active Pending
- 2019-04-12 CA CA3065784A patent/CA3065784A1/en active Pending
- 2019-04-12 KR KR1020227033229A patent/KR102562419B1/en active IP Right Grant
- 2019-04-12 AU AU2019253021A patent/AU2019253021A1/en not_active Abandoned
- 2019-04-12 CN CN201980003278.5A patent/CN110832597A/en active Pending
- 2019-04-12 NZ NZ759881A patent/NZ759881A/en unknown
- 2019-12-02 IL IL271092A patent/IL271092A/en unknown
-
2021
- 2021-06-30 JP JP2021108694A patent/JP7143486B2/en active Active
- 2021-10-26 AU AU2021257920A patent/AU2021257920A1/en not_active Abandoned
-
2022
- 2022-09-14 JP JP2022146121A patent/JP7302081B2/en active Active
-
2023
- 2023-12-14 AU AU2023282274A patent/AU2023282274A1/en active Pending
Also Published As
Publication number | Publication date |
---|---|
JP7143486B2 (en) | 2022-09-28 |
KR102381477B1 (en) | 2022-03-31 |
JP2021170350A (en) | 2021-10-28 |
AU2021257920A1 (en) | 2021-11-18 |
JP6907344B2 (en) | 2021-07-21 |
EP3622524A1 (en) | 2020-03-18 |
AU2023282274A1 (en) | 2024-01-18 |
AU2019253021A1 (en) | 2019-12-19 |
JP2022184947A (en) | 2022-12-13 |
NL2020861B1 (en) | 2019-10-22 |
CN110832597A (en) | 2020-02-21 |
KR102448484B1 (en) | 2022-09-28 |
KR20220043252A (en) | 2022-04-05 |
KR20220137142A (en) | 2022-10-11 |
IL271092A (en) | 2020-01-30 |
NZ759881A (en) | 2022-09-30 |
CA3065784A1 (en) | 2019-10-17 |
KR20200011471A (en) | 2020-02-03 |
JP2020525886A (en) | 2020-08-27 |
KR102562419B1 (en) | 2023-08-01 |
JP7302081B2 (en) | 2023-07-03 |
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