SG10201708498VA - Method for generating extended sequence reads - Google Patents

Method for generating extended sequence reads

Info

Publication number
SG10201708498VA
SG10201708498VA SG10201708498VA SG10201708498VA SG10201708498VA SG 10201708498V A SG10201708498V A SG 10201708498VA SG 10201708498V A SG10201708498V A SG 10201708498VA SG 10201708498V A SG10201708498V A SG 10201708498VA SG 10201708498V A SG10201708498V A SG 10201708498VA
Authority
SG
Singapore
Prior art keywords
sequence reads
extended sequence
generating extended
generating
reads
Prior art date
Application number
SG10201708498VA
Inventor
Stephen R Quake
William F Burkholder
Lewis Z Hong
Original Assignee
Agency Science Tech & Res
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Agency Science Tech & Res filed Critical Agency Science Tech & Res
Publication of SG10201708498VA publication Critical patent/SG10201708498VA/en

Links

Classifications

    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/10Processes for the isolation, preparation or purification of DNA or RNA
    • C12N15/1034Isolating an individual clone by screening libraries
    • C12N15/1065Preparation or screening of tagged libraries, e.g. tagged microorganisms by STM-mutagenesis, tagged polynucleotides, gene tags
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869Methods for sequencing
SG10201708498VA 2013-04-17 2014-04-17 Method for generating extended sequence reads SG10201708498VA (en)

Applications Claiming Priority (1)

Application Number Priority Date Filing Date Title
SG2013029400 2013-04-17

Publications (1)

Publication Number Publication Date
SG10201708498VA true SG10201708498VA (en) 2017-11-29

Family

ID=51731940

Family Applications (2)

Application Number Title Priority Date Filing Date
SG11201508193TA SG11201508193TA (en) 2013-04-17 2014-04-17 Method for generating extended sequence reads
SG10201708498VA SG10201708498VA (en) 2013-04-17 2014-04-17 Method for generating extended sequence reads

Family Applications Before (1)

Application Number Title Priority Date Filing Date
SG11201508193TA SG11201508193TA (en) 2013-04-17 2014-04-17 Method for generating extended sequence reads

Country Status (4)

Country Link
US (2) US11859171B2 (en)
EP (2) EP3597772A1 (en)
SG (2) SG11201508193TA (en)
WO (1) WO2014171898A2 (en)

Families Citing this family (9)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US10233490B2 (en) 2014-11-21 2019-03-19 Metabiotech Corporation Methods for assembling and reading nucleic acid sequences from mixed populations
EP3245304B1 (en) * 2015-01-16 2021-06-30 Seqwell, Inc. Normalized iterative barcoding and sequencing of dna collections
EP3247804B1 (en) * 2015-01-23 2020-08-05 Qiagen Sciences, LLC High multiplex pcr with molecular barcoding
CN104878125B (en) * 2015-06-18 2017-11-07 上海昂朴生物科技有限公司 A kind of high-flux detection method for many resistance sites of hepatitis type B virus
US20190048413A1 (en) * 2016-02-23 2019-02-14 Novozymes A/S Improved next-generation sequencing
CN107858408A (en) * 2016-09-19 2018-03-30 深圳华大基因科技服务有限公司 A kind of generation sequence assemble method of genome two and system
EP3874511A1 (en) * 2018-10-31 2021-09-08 Illumina, Inc. Systems and methods for grouping and collapsing sequencing reads
CN111131184B (en) * 2019-12-06 2022-07-29 长沙理工大学 Autonomous adjustment method for block chain consensus mechanism
US20220336052A1 (en) * 2021-04-19 2022-10-20 University Of Utah Research Foundation Systems and methods for facilitating rapid genome sequence analysis

Family Cites Families (81)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
EP0695305B1 (en) 1993-04-12 2003-08-06 Northwestern University Method of forming oligonucleotides
US5780613A (en) 1995-08-01 1998-07-14 Northwestern University Covalent lock for self-assembled oligonucleotide constructs
AR021833A1 (en) 1998-09-30 2002-08-07 Applied Research Systems METHODS OF AMPLIFICATION AND SEQUENCING OF NUCLEIC ACID
US7955794B2 (en) 2000-09-21 2011-06-07 Illumina, Inc. Multiplex nucleic acid reactions
US7582420B2 (en) 2001-07-12 2009-09-01 Illumina, Inc. Multiplex nucleic acid reactions
US6448717B1 (en) 2000-07-17 2002-09-10 Micron Technology, Inc. Method and apparatuses for providing uniform electron beams from field emission displays
US7108976B2 (en) * 2002-06-17 2006-09-19 Affymetrix, Inc. Complexity management of genomic DNA by locus specific amplification
WO2005003375A2 (en) 2003-01-29 2005-01-13 454 Corporation Methods of amplifying and sequencing nucleic acids
US8114978B2 (en) * 2003-08-05 2012-02-14 Affymetrix, Inc. Methods for genotyping selected polymorphism
EP1790202A4 (en) 2004-09-17 2013-02-20 Pacific Biosciences California Apparatus and method for analysis of molecules
EP2620510B2 (en) 2005-06-15 2020-02-19 Complete Genomics Inc. Single molecule arrays for genetic and chemical analysis
GB0514910D0 (en) 2005-07-20 2005-08-24 Solexa Ltd Method for sequencing a polynucleotide template
ES2338459T5 (en) 2005-09-29 2014-02-24 Keygene N.V. High performance exploration of mutagenized populations
US7932037B2 (en) 2007-12-05 2011-04-26 Perkinelmer Health Sciences, Inc. DNA assays using amplicon probes on encoded particles
ES2490601T3 (en) 2006-11-15 2014-09-04 Biospherex Llc Multi-label sequencing and ecogenomic analysis
EP2639578B1 (en) 2006-12-14 2016-09-14 Life Technologies Corporation Apparatus for measuring analytes using large scale fet arrays
AU2008282862B2 (en) 2007-07-26 2014-07-31 Pacific Biosciences Of California, Inc. Molecular redundant sequencing
CA2697640C (en) 2007-09-21 2016-06-21 Katholieke Universiteit Leuven Tools and methods for genetic tests using next generation sequencing
CA2700838A1 (en) * 2007-09-28 2009-04-09 Pacific Biosciences Of California, Inc. Error-free amplification of dna for clonal sequencing
WO2009091934A1 (en) 2008-01-17 2009-07-23 Sequenom, Inc. Single molecule nucleic acid sequence analysis processes and compositions
PL2963709T3 (en) * 2008-10-24 2017-11-30 Epicentre Technologies Corporation Transposon end compositions and methods for modifying nucleic acids
US9085798B2 (en) 2009-04-30 2015-07-21 Prognosys Biosciences, Inc. Nucleic acid constructs and methods of use
US9524369B2 (en) 2009-06-15 2016-12-20 Complete Genomics, Inc. Processing and analysis of complex nucleic acid sequence data
WO2011015944A2 (en) 2009-08-06 2011-02-10 Cedars-Sinai Medical Center Use of free dna as an early predictor of severity in acute pancreatitis
EP3029141A1 (en) 2009-08-20 2016-06-08 Population Genetics Technologies Ltd. Compositions and methods for intramolecular nucleic acid rearrangement
US9023769B2 (en) 2009-11-30 2015-05-05 Complete Genomics, Inc. cDNA library for nucleic acid sequencing
US9315857B2 (en) 2009-12-15 2016-04-19 Cellular Research, Inc. Digital counting of individual molecules by stochastic attachment of diverse label-tags
US8835358B2 (en) 2009-12-15 2014-09-16 Cellular Research, Inc. Digital counting of individual molecules by stochastic attachment of diverse labels
CN102656279A (en) 2009-12-17 2012-09-05 凯津公司 Restriction enzyme based whole genome sequencing
EP3392349A1 (en) 2010-02-12 2018-10-24 Raindance Technologies, Inc. Digital analyte analysis
US8652779B2 (en) 2010-04-09 2014-02-18 Pacific Biosciences Of California, Inc. Nanopore sequencing using charge blockade labels
WO2011143231A2 (en) * 2010-05-10 2011-11-17 The Broad Institute High throughput paired-end sequencing of large-insert clone libraries
US8653779B2 (en) 2010-05-25 2014-02-18 Toyota Jidosha Kabushiki Kaisha Rotating electrical-machine control system and method of operating magnet temperature of rotating electrical-machine
BR112012032586B1 (en) 2010-06-30 2021-08-17 Bgi Genomics Co., Ltd METHODS FOR DETERMINING THE NUCLEOTIDE SEQUENCE OF A NUCLEIC ACID OF INTEREST AND FOR DETERMINING THE HLA GENOTYPE IN A SAMPLE
WO2012024658A2 (en) 2010-08-20 2012-02-23 IntegenX, Inc. Integrated analysis system
WO2012054873A2 (en) 2010-10-22 2012-04-26 Cold Spring Harbor Laboratory Varietal counting of nucleic acids for obtaining genomic copy number information
US8829171B2 (en) 2011-02-10 2014-09-09 Illumina, Inc. Linking sequence reads using paired code tags
CA2821299C (en) * 2010-11-05 2019-02-12 Frank J. Steemers Linking sequence reads using paired code tags
US8877442B2 (en) 2010-12-07 2014-11-04 The Board Of Trustees Of The Leland Stanford Junior University Non-invasive determination of fetal inheritance of parental haplotypes at the genome-wide scale
WO2012103154A1 (en) 2011-01-24 2012-08-02 Nugen Technologies, Inc. Stem-loop composite rna-dna adaptor-primers: compositions and methods for library generation, amplification and other downstream manipulations
EP2675916B1 (en) 2011-02-15 2016-08-24 Leica Biosystems Newcastle Limited METHOD FOR LOCALIZED IN SITU DETECTION OF mRNA
EP3736281A1 (en) * 2011-02-18 2020-11-11 Bio-Rad Laboratories, Inc. Compositions and methods for molecular labeling
US9260753B2 (en) 2011-03-24 2016-02-16 President And Fellows Of Harvard College Single cell nucleic acid detection and analysis
US9476095B2 (en) 2011-04-15 2016-10-25 The Johns Hopkins University Safe sequencing system
WO2012149042A2 (en) 2011-04-25 2012-11-01 Bio-Rad Laboratories, Inc. Methods and compositions for nucleic acid analysis
US8722585B2 (en) 2011-05-08 2014-05-13 Yan Wang Methods of making di-tagged DNA libraries from DNA or RNA using double-tagged oligonucleotides
US8841071B2 (en) 2011-06-02 2014-09-23 Raindance Technologies, Inc. Sample multiplexing
US9679103B2 (en) 2011-08-25 2017-06-13 Complete Genomics, Inc. Phasing of heterozygous loci to determine genomic haplotypes
GB2496016B (en) 2011-09-09 2016-03-16 Univ Leland Stanford Junior Methods for obtaining a sequence
US9514272B2 (en) 2011-10-12 2016-12-06 Complete Genomics, Inc. Identification of DNA fragments and structural variations
US11177020B2 (en) 2012-02-27 2021-11-16 The University Of North Carolina At Chapel Hill Methods and uses for molecular tags
EP3305918B1 (en) 2012-03-05 2020-06-03 President and Fellows of Harvard College Methods for epigenetic sequencing
EP2825675B1 (en) 2012-03-13 2017-12-27 Patel, Abhijit Ajit Measurement of nucleic acid variants using highly-multiplexed error-suppressed deep sequencing
EP2861768A4 (en) 2012-06-15 2016-03-02 Genia Technologies Inc Chip set-up and high-accuracy nucleic acid sequencing
US10273541B2 (en) 2012-08-14 2019-04-30 10X Genomics, Inc. Methods and systems for processing polynucleotides
EP2898071A4 (en) 2012-09-21 2016-07-20 Broad Inst Inc Compositions and methods for long insert, paired end libraries of nucleic acids in emulsion droplets
DK2914743T3 (en) 2012-11-02 2019-10-14 Life Technologies Corp EXTRACTION, DETECTION AND QUANTIFICATION OF LITTLE RNA
CN104903466B (en) 2012-11-05 2016-11-23 鲁比康基因组学公司 Bar coding nucleic acid
NZ710299A (en) 2013-01-31 2020-01-31 Codexis Inc Methods, systems, and software for identifying bio-molecules with interacting components
WO2014129894A1 (en) 2013-02-19 2014-08-28 Cergentis B.V. Sequencing strategies for genomic regions of interest
US9328382B2 (en) 2013-03-15 2016-05-03 Complete Genomics, Inc. Multiple tagging of individual long DNA fragments
US10385334B2 (en) 2013-05-31 2019-08-20 Si Lok Molecular identity tags and uses thereof in identifying intermolecular ligation products
US20160122753A1 (en) 2013-06-12 2016-05-05 Tarjei Mikkelsen High-throughput rna-seq
CN105637099B (en) 2013-08-23 2020-05-19 深圳华大智造科技有限公司 Long fragment de novo assembly using short reads
DK3039158T3 (en) 2013-08-28 2019-03-04 Becton Dickinson Co MASSIVE PARALLEL SINGLE CELL CELL ANALYSIS
CN105593683B (en) 2013-10-01 2018-11-30 考利达基因组股份有限公司 That identifies the variation in genome determines phase and connection method
US9834814B2 (en) 2013-11-22 2017-12-05 Agilent Technologies, Inc. Spatial molecular barcoding of in situ nucleic acids
US10428376B2 (en) 2013-12-02 2019-10-01 Regents Of The University Of Minnesota RNA amplification and oligonucleotide library preparation
US10428368B2 (en) 2013-12-05 2019-10-01 New England Biolabs, Inc. Methods for enriching for a population of RNA molecules
EP4039811B1 (en) 2014-01-31 2023-09-20 Integrated DNA Technologies, Inc. Improved methods for processing dna substrates
CN114214314A (en) 2014-06-24 2022-03-22 生物辐射实验室股份有限公司 Digital PCR barcoding
US10233490B2 (en) 2014-11-21 2019-03-19 Metabiotech Corporation Methods for assembling and reading nucleic acid sequences from mixed populations
AU2016215304B2 (en) 2015-02-04 2022-01-27 The Regents Of The University Of California Sequencing of nucleic acids via barcoding in discrete entities
EP4039824A1 (en) 2016-08-15 2022-08-10 Pacific Biosciences of California, Inc. Method and system for sequencing nucleic acids
WO2018045109A1 (en) 2016-08-30 2018-03-08 Metabiotech Corporation Methods and compositions for phased sequencing
EP3665280A4 (en) 2017-08-10 2021-10-06 Metabiotech Corporation Tagging nucleic acid molecules from single cells for phased sequencing
EP3752832A1 (en) 2018-02-12 2020-12-23 10X Genomics, Inc. Methods characterizing multiple analytes from individual cells or cell populations
EP3853358A1 (en) 2018-09-17 2021-07-28 Omniome, Inc. Engineered polymerases for improved sequencing
US20200149095A1 (en) 2018-11-14 2020-05-14 Element Biosciences, Inc. Low binding supports for improved solid-phase dna hybridization and amplification
WO2022018055A1 (en) 2020-07-20 2022-01-27 Westfälische Wilhelms-Universität Münster Circulation method to sequence immune repertoires of individual cells
WO2022086880A1 (en) 2020-10-19 2022-04-28 Morava Inc. Improved next generation sequencing

Also Published As

Publication number Publication date
SG11201508193TA (en) 2015-11-27
US11859171B2 (en) 2024-01-02
US20240043832A1 (en) 2024-02-08
EP2986741B1 (en) 2019-07-24
EP3597772A1 (en) 2020-01-22
EP2986741A4 (en) 2016-12-14
EP2986741A2 (en) 2016-02-24
WO2014171898A2 (en) 2014-10-23
US20160076023A1 (en) 2016-03-17
WO2014171898A3 (en) 2014-12-11

Similar Documents

Publication Publication Date Title
GB201314695D0 (en) Method
GB201309057D0 (en) Method
SG10201708498VA (en) Method for generating extended sequence reads
GB201316744D0 (en) Method
GB201309928D0 (en) Method
GB201316849D0 (en) Method
GB201301857D0 (en) Method
SI2837678T1 (en) Method for improved rendering
GB201313249D0 (en) Method
GB201309654D0 (en) Method
GB201301233D0 (en) Method
GB201300409D0 (en) Method
GB201311385D0 (en) Method
GB201305714D0 (en) Method
GB201301094D0 (en) Method
GB201314054D0 (en) Method
GB201312609D0 (en) Method
GB201311389D0 (en) Method
GB201317970D0 (en) Method
GB201317826D0 (en) Method
GB201316878D0 (en) Method
GB201316321D0 (en) Method
GB201314332D0 (en) Method
GB201313412D0 (en) Method
GB201313416D0 (en) Method