SE9403612D0 - Method for identifying two nucleic acid base code sequences - Google Patents

Method for identifying two nucleic acid base code sequences

Info

Publication number
SE9403612D0
SE9403612D0 SE9403612A SE9403612A SE9403612D0 SE 9403612 D0 SE9403612 D0 SE 9403612D0 SE 9403612 A SE9403612 A SE 9403612A SE 9403612 A SE9403612 A SE 9403612A SE 9403612 D0 SE9403612 D0 SE 9403612D0
Authority
SE
Sweden
Prior art keywords
sequences
base code
sequence
code sequences
identifying
Prior art date
Application number
SE9403612A
Other languages
Swedish (sv)
Inventor
Lennart Bjoerkesten
Original Assignee
Pharmacia Biotech Ab
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Pharmacia Biotech Ab filed Critical Pharmacia Biotech Ab
Priority to SE9403612A priority Critical patent/SE9403612D0/en
Publication of SE9403612D0 publication Critical patent/SE9403612D0/en
Priority to PCT/SE1995/001213 priority patent/WO1996012822A1/en
Priority to AU38193/95A priority patent/AU3819395A/en

Links

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869—Methods for sequencing
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/10—Sequence alignment; Homology search
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/20—Sequence assembly
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00—Oligonucleotides characterized by their use
    • C12Q2600/156—Polymorphic or mutational markers

Landscapes

  • Life Sciences & Earth Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Chemical & Material Sciences (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Analytical Chemistry (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Biophysics (AREA)
  • Biotechnology (AREA)
  • Theoretical Computer Science (AREA)
  • Medical Informatics (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Evolutionary Biology (AREA)
  • Organic Chemistry (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Molecular Biology (AREA)
  • Microbiology (AREA)
  • Immunology (AREA)
  • Biochemistry (AREA)
  • General Engineering & Computer Science (AREA)
  • Genetics & Genomics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)

Abstract

In a method and an apparatus for identifying two nucleic acid base code sequences belonging to a given set of known base code sequences and being superposed on each other in an original sequence which comprises base codes as well as ambiguity codes, a master template sequence is constructed from said given set of base code sequences as combination sequences of base codes and ambiguity codes. One or more determinations of the original sequence are made to obtain one or more test sequences which are aligned against said master template sequence in such a manner that the matching between the sequences is optimized. A consensus sequence is determined from the aligned test sequences and is compared with all the combination sequences. A match between one of the combination sequences and the consensus sequence indicates that particular combination sequence corresponds to said two nucleic acide base code sequences to be identified.
SE9403612A 1994-10-21 1994-10-21 Method for identifying two nucleic acid base code sequences SE9403612D0 (en)

Priority Applications (3)

Application Number Priority Date Filing Date Title
SE9403612A SE9403612D0 (en) 1994-10-21 1994-10-21 Method for identifying two nucleic acid base code sequences
PCT/SE1995/001213 WO1996012822A1 (en) 1994-10-21 1995-10-17 Method for indentifying two nucleic acid base code sequences
AU38193/95A AU3819395A (en) 1994-10-21 1995-10-17 Method for indentifying two nucleic acid base code sequences

Applications Claiming Priority (1)

Application Number Priority Date Filing Date Title
SE9403612A SE9403612D0 (en) 1994-10-21 1994-10-21 Method for identifying two nucleic acid base code sequences

Publications (1)

Publication Number Publication Date
SE9403612D0 true SE9403612D0 (en) 1994-10-21

Family

ID=20395701

Family Applications (1)

Application Number Title Priority Date Filing Date
SE9403612A SE9403612D0 (en) 1994-10-21 1994-10-21 Method for identifying two nucleic acid base code sequences

Country Status (3)

Country Link
AU (1) AU3819395A (en)
SE (1) SE9403612D0 (en)
WO (1) WO1996012822A1 (en)

Families Citing this family (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO1992015711A1 (en) * 1991-03-06 1992-09-17 Regents Of The University Of Minnesota Dna sequence-based hla typing method
ES2683707T3 (en) * 2012-05-02 2018-09-27 Ibis Biosciences, Inc. DNA sequencing

Also Published As

Publication number Publication date
AU3819395A (en) 1996-05-15
WO1996012822A1 (en) 1996-05-02

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