PL4179539T3 - Kompresja informacji genomicznych przez konfigurowalne kodowanie arytmetyczne oparte na uczeniu maszynowym - Google Patents

Kompresja informacji genomicznych przez konfigurowalne kodowanie arytmetyczne oparte na uczeniu maszynowym

Info

Publication number
PL4179539T3
PL4179539T3 PL21742062.9T PL21742062T PL4179539T3 PL 4179539 T3 PL4179539 T3 PL 4179539T3 PL 21742062 T PL21742062 T PL 21742062T PL 4179539 T3 PL4179539 T3 PL 4179539T3
Authority
PL
Poland
Prior art keywords
machine learning
arithmetic coding
genomic information
based configurable
configurable arithmetic
Prior art date
Application number
PL21742062.9T
Other languages
English (en)
Inventor
Shubham Chandak
Yee Him Cheung
Original Assignee
Koninklijke Philips N.V.
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Koninklijke Philips N.V. filed Critical Koninklijke Philips N.V.
Publication of PL4179539T3 publication Critical patent/PL4179539T3/pl

Links

Classifications

    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G16B50/50—Compression of genetic data
    • H—ELECTRICITY
    • H03—ELECTRONIC CIRCUITRY
    • H03M—CODING; DECODING; CODE CONVERSION IN GENERAL
    • H03M7/00—Conversion of a code where information is represented by a given sequence or number of digits to a code where the same, similar or subset of information is represented by a different sequence or number of digits
    • H03M7/30—Compression; Expansion; Suppression of unnecessary data, e.g. redundancy reduction
    • H03M7/40—Conversion to or from variable length codes, e.g. Shannon-Fano code, Huffman code, Morse code
    • H03M7/4006—Conversion to or from arithmetic code
    • H—ELECTRICITY
    • H03—ELECTRONIC CIRCUITRY
    • H03M—CODING; DECODING; CODE CONVERSION IN GENERAL
    • H03M7/00—Conversion of a code where information is represented by a given sequence or number of digits to a code where the same, similar or subset of information is represented by a different sequence or number of digits
    • H03M7/30—Compression; Expansion; Suppression of unnecessary data, e.g. redundancy reduction
    • H03M7/60—General implementation details not specific to a particular type of compression
    • H03M7/6064—Selection of Compressor
    • H03M7/6076—Selection between compressors of the same type
    • H—ELECTRICITY
    • H03—ELECTRONIC CIRCUITRY
    • H03M—CODING; DECODING; CODE CONVERSION IN GENERAL
    • H03M7/00—Conversion of a code where information is represented by a given sequence or number of digits to a code where the same, similar or subset of information is represented by a different sequence or number of digits
    • H03M7/30—Compression; Expansion; Suppression of unnecessary data, e.g. redundancy reduction
    • H03M7/3068—Precoding preceding compression, e.g. Burrows-Wheeler transformation
    • H03M7/3079—Context modeling

Landscapes

  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Physics & Mathematics (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Theoretical Computer Science (AREA)
  • Medical Informatics (AREA)
  • Biophysics (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • General Health & Medical Sciences (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Evolutionary Biology (AREA)
  • Biotechnology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Bioethics (AREA)
  • Databases & Information Systems (AREA)
  • Genetics & Genomics (AREA)
  • Computer Vision & Pattern Recognition (AREA)
  • Software Systems (AREA)
  • Public Health (AREA)
  • Evolutionary Computation (AREA)
  • Epidemiology (AREA)
  • Data Mining & Analysis (AREA)
  • Artificial Intelligence (AREA)
  • Chemical & Material Sciences (AREA)
  • Analytical Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Compression, Expansion, Code Conversion, And Decoders (AREA)
  • Compression Or Coding Systems Of Tv Signals (AREA)
PL21742062.9T 2020-07-10 2021-06-30 Kompresja informacji genomicznych przez konfigurowalne kodowanie arytmetyczne oparte na uczeniu maszynowym PL4179539T3 (pl)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US202063050193P 2020-07-10 2020-07-10
PCT/EP2021/067960 WO2022008311A1 (en) 2020-07-10 2021-06-30 Genomic information compression by configurable machine learning-based arithmetic coding

Publications (1)

Publication Number Publication Date
PL4179539T3 true PL4179539T3 (pl) 2026-01-05

Family

ID=76920753

Family Applications (1)

Application Number Title Priority Date Filing Date
PL21742062.9T PL4179539T3 (pl) 2020-07-10 2021-06-30 Kompresja informacji genomicznych przez konfigurowalne kodowanie arytmetyczne oparte na uczeniu maszynowym

Country Status (7)

Country Link
US (1) US20230253074A1 (pl)
EP (1) EP4179539B1 (pl)
JP (1) JP7826277B2 (pl)
CN (1) CN116018647A (pl)
ES (1) ES3050587T3 (pl)
PL (1) PL4179539T3 (pl)
WO (1) WO2022008311A1 (pl)

Families Citing this family (8)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN113810155B (zh) * 2020-06-17 2022-11-18 华为技术有限公司 信道编译码方法和通信装置
US11818399B2 (en) * 2021-01-04 2023-11-14 Tencent America LLC Techniques for signaling neural network topology and parameters in the coded video stream
US11841829B2 (en) * 2021-05-25 2023-12-12 Dell Products L.P. Content-based dynamic hybrid data compression
WO2023136375A1 (ko) * 2022-01-13 2023-07-20 엘지전자 주식회사 무선 통신 시스템에서 수신 기기가 단-대-단 학습을 수행하는 방법, 수신 기기, 프로세싱 장치 및 저장 매체, 그리고 전송 기기가 단-대-단 학습을 수행하는 방법, 전송 기기
WO2024005659A1 (en) * 2022-06-30 2024-01-04 Huawei Technologies Co., Ltd. Adaptive selection of entropy coding parameters
CN115083530B (zh) * 2022-08-22 2022-11-04 广州明领基因科技有限公司 基因测序数据压缩方法、装置、终端设备和存储介质
CN117692094B (zh) * 2022-09-02 2026-03-20 北京邮电大学 编码方法、解码方法、编码装置、解码装置及电子设备
CN116886104B (zh) * 2023-09-08 2023-11-21 西安小草植物科技有限责任公司 一种基于人工智能的智慧医疗数据分析方法

Family Cites Families (7)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN101461243A (zh) * 2006-03-29 2009-06-17 诺基亚西门子通信有限责任两合公司 为可定标的数据流产生数据块的方法和设备
AU2012268951B2 (en) * 2011-06-16 2015-07-30 Dolby Video Compression, Llc Context initialization in entropy coding
CN106096327B (zh) * 2016-06-07 2018-08-17 广州麦仑信息科技有限公司 基于Torch监督式深度学习的基因性状识别方法
CN110663022B (zh) * 2016-10-11 2024-03-15 耶诺姆希斯股份公司 使用基因组描述符紧凑表示生物信息学数据的方法和设备
JP7324145B2 (ja) * 2017-02-14 2023-08-09 ゲノムシス エスエー ゲノムシーケンスリードの効率的圧縮のための方法及びシステム
CN108306650A (zh) * 2018-01-16 2018-07-20 厦门极元科技有限公司 基因测序数据的压缩方法
CN115088038A (zh) * 2020-02-07 2022-09-20 皇家飞利浦有限公司 基于新上下文的经比对的测序数据中的改进质量值压缩框架

Also Published As

Publication number Publication date
EP4179539B1 (en) 2025-10-01
US20230253074A1 (en) 2023-08-10
EP4179539C0 (en) 2025-10-01
EP4179539A1 (en) 2023-05-17
CN116018647A (zh) 2023-04-25
ES3050587T3 (en) 2025-12-22
WO2022008311A1 (en) 2022-01-13
JP7826277B2 (ja) 2026-03-09
JP2023535131A (ja) 2023-08-16

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