PL3207481T3 - Redukowanie błędu w przewidywanych powiązaniach genetycznych - Google Patents

Redukowanie błędu w przewidywanych powiązaniach genetycznych

Info

Publication number
PL3207481T3
PL3207481T3 PL15850218T PL15850218T PL3207481T3 PL 3207481 T3 PL3207481 T3 PL 3207481T3 PL 15850218 T PL15850218 T PL 15850218T PL 15850218 T PL15850218 T PL 15850218T PL 3207481 T3 PL3207481 T3 PL 3207481T3
Authority
PL
Poland
Prior art keywords
reducing error
genetic relationships
predicted genetic
predicted
relationships
Prior art date
Application number
PL15850218T
Other languages
English (en)
Inventor
Mathew J. Barber
Yong Wang
Keith D. NOTO
Kenneth G. CHAHINE
Catherine Ann Ball
Original Assignee
Ancestry.Com Dna, Llc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Ancestry.Com Dna, Llc filed Critical Ancestry.Com Dna, Llc
Publication of PL3207481T3 publication Critical patent/PL3207481T3/pl

Links

Classifications

    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G16B20/40Population genetics; Linkage disequilibrium
    • GPHYSICS
    • G06COMPUTING; CALCULATING OR COUNTING
    • G06NCOMPUTING ARRANGEMENTS BASED ON SPECIFIC COMPUTATIONAL MODELS
    • G06N5/00Computing arrangements using knowledge-based models
    • G06N5/04Inference or reasoning models
    • G06N5/048Fuzzy inferencing
    • GPHYSICS
    • G06COMPUTING; CALCULATING OR COUNTING
    • G06NCOMPUTING ARRANGEMENTS BASED ON SPECIFIC COMPUTATIONAL MODELS
    • G06N7/00Computing arrangements based on specific mathematical models
    • G06N7/01Probabilistic graphical models, e.g. probabilistic networks
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B10/00ICT specially adapted for evolutionary bioinformatics, e.g. phylogenetic tree construction or analysis
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G16B20/20Allele or variant detection, e.g. single nucleotide polymorphism [SNP] detection
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6881Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for tissue or cell typing, e.g. human leukocyte antigen [HLA] probes

Landscapes

  • Engineering & Computer Science (AREA)
  • Physics & Mathematics (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Theoretical Computer Science (AREA)
  • Medical Informatics (AREA)
  • General Health & Medical Sciences (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Biotechnology (AREA)
  • Evolutionary Biology (AREA)
  • Biophysics (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Genetics & Genomics (AREA)
  • Software Systems (AREA)
  • Molecular Biology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Analytical Chemistry (AREA)
  • Chemical & Material Sciences (AREA)
  • Artificial Intelligence (AREA)
  • Data Mining & Analysis (AREA)
  • Evolutionary Computation (AREA)
  • Physiology (AREA)
  • General Physics & Mathematics (AREA)
  • Computing Systems (AREA)
  • General Engineering & Computer Science (AREA)
  • Mathematical Physics (AREA)
  • Databases & Information Systems (AREA)
  • Public Health (AREA)
  • Epidemiology (AREA)
  • Computer Vision & Pattern Recognition (AREA)
  • Bioethics (AREA)
  • Animal Behavior & Ethology (AREA)
  • Ecology (AREA)
  • Automation & Control Theory (AREA)
  • Fuzzy Systems (AREA)
  • Computational Linguistics (AREA)
  • Algebra (AREA)
  • Probability & Statistics with Applications (AREA)
  • Computational Mathematics (AREA)
PL15850218T 2014-10-14 2015-10-14 Redukowanie błędu w przewidywanych powiązaniach genetycznych PL3207481T3 (pl)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US201462063849P 2014-10-14 2014-10-14
PCT/US2015/055579 WO2016061260A1 (en) 2014-10-14 2015-10-14 Reducing error in predicted genetic relationships
EP15850218.7A EP3207481B1 (en) 2014-10-14 2015-10-14 Reducing error in predicted genetic relationships

Publications (1)

Publication Number Publication Date
PL3207481T3 true PL3207481T3 (pl) 2020-05-18

Family

ID=55747284

Family Applications (1)

Application Number Title Priority Date Filing Date
PL15850218T PL3207481T3 (pl) 2014-10-14 2015-10-14 Redukowanie błędu w przewidywanych powiązaniach genetycznych

Country Status (9)

Country Link
US (2) US10720229B2 (pl)
EP (2) EP3621080B1 (pl)
AU (1) AU2015332507B2 (pl)
CA (1) CA2964780C (pl)
DK (1) DK3207481T3 (pl)
ES (1) ES2762942T3 (pl)
MX (1) MX2017004989A (pl)
PL (1) PL3207481T3 (pl)
WO (1) WO2016061260A1 (pl)

Families Citing this family (28)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US10275569B2 (en) 2007-10-15 2019-04-30 22andMe, Inc. Family inheritance
US9336177B2 (en) 2007-10-15 2016-05-10 23Andme, Inc. Genome sharing
EP3276526A1 (en) 2008-12-31 2018-01-31 23Andme, Inc. Finding relatives in a database
US8990250B1 (en) 2011-10-11 2015-03-24 23Andme, Inc. Cohort selection with privacy protection
US10437858B2 (en) 2011-11-23 2019-10-08 23Andme, Inc. Database and data processing system for use with a network-based personal genetics services platform
US10025877B2 (en) 2012-06-06 2018-07-17 23Andme, Inc. Determining family connections of individuals in a database
US9213947B1 (en) 2012-11-08 2015-12-15 23Andme, Inc. Scalable pipeline for local ancestry inference
US9977708B1 (en) 2012-11-08 2018-05-22 23Andme, Inc. Error correction in ancestry classification
EP3621080B1 (en) * 2014-10-14 2023-09-06 Ancestry.com DNA, LLC Reducing error in predicted genetic relationships
MX2017004978A (es) 2014-10-17 2017-09-13 Ancestry Com Dna Llc Modelos de formacion de fases de haplotipo.
AU2015342771B2 (en) 2014-11-06 2021-05-06 Ancestryhealth.Com, Llc Predicting health outcomes
MX2018000622A (es) * 2015-07-13 2018-07-06 Ancestry Com Dna Llc Sistema de determinacion de etnicidad genetica local.
WO2018031739A1 (en) * 2016-08-10 2018-02-15 New York Genome Center, Inc. Ultra-low coverage genome sequencing and uses thereof
US10896741B2 (en) 2018-08-17 2021-01-19 Ancestry.Com Dna, Llc Prediction of phenotypes using recommender systems
AU2019370896A1 (en) 2018-10-31 2021-06-17 Ancestry.Com Dna, Llc Estimation of phenotypes using DNA, pedigree, and historical data
CA3147888A1 (en) 2019-07-19 2021-01-28 23Andme, Inc. Phase-aware determination of identity-by-descent dna segments
CA3149354A1 (en) * 2019-08-02 2021-02-11 Ancestry.Com Dna, Llc Clustering of matched segments to determine linkage of dataset in a database
US12050629B1 (en) 2019-08-02 2024-07-30 Ancestry.Com Dna, Llc Determining data inheritance of data segments
CA3154157A1 (en) 2019-09-13 2021-03-18 23Andme, Inc. Methods and systems for determining and displaying pedigrees
JP2023501006A (ja) * 2019-11-18 2023-01-17 エンバーク ヴェテリナリー,インコーポレーテッド 祖先血縁を決定するための方法およびシステム
US11817176B2 (en) 2020-08-13 2023-11-14 23Andme, Inc. Ancestry composition determination
CA3194288A1 (en) 2020-10-09 2022-04-14 23Andme, Inc. Formatting and storage of genetic markers
EP4341825A1 (en) 2021-05-20 2024-03-27 Ancestry.com Operations Inc. Domain knowledge guided selection of nodes for addition to data trees
WO2023281450A1 (en) 2021-07-09 2023-01-12 Ancestry.Com Operations Inc. Handwriting recognition pipelines for genealogical records
WO2023152692A1 (en) 2022-02-10 2023-08-17 Ancestry.Com Operations Inc. Determining relationships of historical data records
US20230281310A1 (en) * 2022-03-01 2023-09-07 Meta Plataforms, Inc. Systems and methods of uncertainty-aware self-supervised-learning for malware and threat detection
US20230325373A1 (en) 2022-03-15 2023-10-12 Ancestry.Com Operations Inc. Machine-learning based automated document integration into genealogical trees
US20230335217A1 (en) 2022-04-13 2023-10-19 Ancestry.Com Dna, Llc Accelerated hidden markov models for genotype analysis

Family Cites Families (9)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
EP3276526A1 (en) * 2008-12-31 2018-01-31 23Andme, Inc. Finding relatives in a database
WO2011139797A2 (en) * 2010-04-27 2011-11-10 Spiral Genetics Inc. Method and system for analysis and error correction of biological sequences and inference of relationship for multiple samples
WO2012099890A1 (en) * 2011-01-18 2012-07-26 University Of Utah Research Foundation Estimation of recent shared ancestry
AU2013312355A1 (en) * 2012-09-06 2014-09-18 Ancestry.Com Dna, Llc Using haplotypes to infer ancestral origins for recently admixed individuals
NZ629509A (en) 2013-03-15 2017-04-28 Ancestry Com Dna Llc Family networks
EP3621080B1 (en) * 2014-10-14 2023-09-06 Ancestry.com DNA, LLC Reducing error in predicted genetic relationships
US20170213127A1 (en) * 2016-01-24 2017-07-27 Matthew Charles Duncan Method and System for Discovering Ancestors using Genomic and Genealogic Data
WO2018031739A1 (en) * 2016-08-10 2018-02-15 New York Genome Center, Inc. Ultra-low coverage genome sequencing and uses thereof
SG11202001715YA (en) * 2017-09-07 2020-03-30 Regeneron Pharma Systems and methods for leveraging relatedness in genomic data analysis

Also Published As

Publication number Publication date
US20170220738A1 (en) 2017-08-03
EP3207481A4 (en) 2018-04-04
MX2017004989A (es) 2017-11-13
EP3621080A1 (en) 2020-03-11
US20200286591A1 (en) 2020-09-10
EP3207481A1 (en) 2017-08-23
CA2964780A1 (en) 2016-04-21
CA2964780C (en) 2023-03-21
NZ731808A (en) 2021-10-29
WO2016061260A1 (en) 2016-04-21
DK3207481T3 (da) 2020-02-03
EP3207481B1 (en) 2019-12-04
AU2015332507A1 (en) 2017-06-01
EP3621080B1 (en) 2023-09-06
ES2762942T3 (es) 2020-05-26
AU2015332507B2 (en) 2021-09-02
US10720229B2 (en) 2020-07-21

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