OA21239A - Anti-chemokin like receptor 1 humanized antibodies and their therapeutic applications. - Google Patents
Anti-chemokin like receptor 1 humanized antibodies and their therapeutic applications. Download PDFInfo
- Publication number
- OA21239A OA21239A OA1202200137 OA21239A OA 21239 A OA21239 A OA 21239A OA 1202200137 OA1202200137 OA 1202200137 OA 21239 A OA21239 A OA 21239A
- Authority
- OA
- OAPI
- Prior art keywords
- seq
- antibody
- cmklr1
- antigen
- binding fragment
- Prior art date
Links
- 230000001225 therapeutic effect Effects 0.000 title claims description 35
- 102100031011 Chemerin-like receptor 1 Human genes 0.000 claims abstract description 222
- 150000001875 compounds Chemical class 0.000 claims abstract description 90
- 230000004054 inflammatory process Effects 0.000 claims abstract description 89
- 206010061218 Inflammation Diseases 0.000 claims abstract description 86
- 239000000556 agonist Substances 0.000 claims abstract description 74
- 208000037265 diseases, disorders, signs and symptoms Diseases 0.000 claims abstract description 55
- 101000919756 Homo sapiens Chemerin-like receptor 1 Proteins 0.000 claims abstract description 37
- 201000010099 disease Diseases 0.000 claims abstract description 32
- 230000027455 binding Effects 0.000 claims description 238
- 108700038876 Chemerin-like receptor 1 Proteins 0.000 claims description 205
- 239000000427 antigen Substances 0.000 claims description 185
- 108091007433 antigens Proteins 0.000 claims description 185
- 102000036639 antigens Human genes 0.000 claims description 185
- 239000012634 fragment Substances 0.000 claims description 166
- 210000004027 cell Anatomy 0.000 claims description 143
- 238000011282 treatment Methods 0.000 claims description 92
- 125000003275 alpha amino acid group Chemical group 0.000 claims description 87
- 241000282414 Homo sapiens Species 0.000 claims description 66
- 206010028980 Neoplasm Diseases 0.000 claims description 62
- 108090000765 processed proteins & peptides Proteins 0.000 claims description 53
- 230000000694 effects Effects 0.000 claims description 48
- 102000004196 processed proteins & peptides Human genes 0.000 claims description 37
- 101710170513 Retinoic acid receptor responder protein 2 Proteins 0.000 claims description 33
- 102100033914 Retinoic acid receptor responder protein 2 Human genes 0.000 claims description 33
- 206010009944 Colon cancer Diseases 0.000 claims description 29
- 229920001184 polypeptide Polymers 0.000 claims description 29
- 230000002757 inflammatory effect Effects 0.000 claims description 28
- 201000011510 cancer Diseases 0.000 claims description 26
- 208000027866 inflammatory disease Diseases 0.000 claims description 26
- 206010053219 non-alcoholic steatohepatitis Diseases 0.000 claims description 20
- 101100454807 Caenorhabditis elegans lgg-1 gene Proteins 0.000 claims description 19
- 208000022559 Inflammatory bowel disease Diseases 0.000 claims description 19
- 208000023275 Autoimmune disease Diseases 0.000 claims description 18
- 102000049854 human CMKLR1 Human genes 0.000 claims description 18
- 201000004681 Psoriasis Diseases 0.000 claims description 16
- 125000000539 amino acid group Chemical group 0.000 claims description 16
- 201000008275 breast carcinoma Diseases 0.000 claims description 16
- 208000037976 chronic inflammation Diseases 0.000 claims description 16
- 238000000338 in vitro Methods 0.000 claims description 16
- 230000001154 acute effect Effects 0.000 claims description 15
- 230000001684 chronic effect Effects 0.000 claims description 15
- 206010040047 Sepsis Diseases 0.000 claims description 14
- 206010047115 Vasculitis Diseases 0.000 claims description 14
- 208000037893 chronic inflammatory disorder Diseases 0.000 claims description 14
- 206010034674 peritonitis Diseases 0.000 claims description 14
- 201000003883 Cystic fibrosis Diseases 0.000 claims description 13
- 208000015181 infectious disease Diseases 0.000 claims description 13
- 201000009030 Carcinoma Diseases 0.000 claims description 12
- 201000004624 Dermatitis Diseases 0.000 claims description 12
- 208000010668 atopic eczema Diseases 0.000 claims description 11
- 102000000072 beta-Arrestins Human genes 0.000 claims description 11
- 108010080367 beta-Arrestins Proteins 0.000 claims description 11
- 206010023332 keratitis Diseases 0.000 claims description 11
- 201000010666 keratoconjunctivitis Diseases 0.000 claims description 11
- 208000015122 neurodegenerative disease Diseases 0.000 claims description 11
- 208000028169 periodontal disease Diseases 0.000 claims description 11
- 206010058467 Lung neoplasm malignant Diseases 0.000 claims description 10
- 206010039710 Scleroderma Diseases 0.000 claims description 10
- 201000005202 lung cancer Diseases 0.000 claims description 10
- 208000020816 lung neoplasm Diseases 0.000 claims description 10
- 208000037819 metastatic cancer Diseases 0.000 claims description 10
- 208000011575 metastatic malignant neoplasm Diseases 0.000 claims description 10
- 208000035475 disorder Diseases 0.000 claims description 9
- 238000001727 in vivo Methods 0.000 claims description 9
- 230000019491 signal transduction Effects 0.000 claims description 9
- 210000000805 cytoplasm Anatomy 0.000 claims description 8
- 208000008338 non-alcoholic fatty liver disease Diseases 0.000 claims description 8
- 208000015943 Coeliac disease Diseases 0.000 claims description 7
- 208000003556 Dry Eye Syndromes Diseases 0.000 claims description 7
- 206010013774 Dry eye Diseases 0.000 claims description 7
- 206010024291 Leukaemias acute myeloid Diseases 0.000 claims description 7
- 239000007788 liquid Substances 0.000 claims description 7
- 206010025135 lupus erythematosus Diseases 0.000 claims description 7
- 201000006417 multiple sclerosis Diseases 0.000 claims description 7
- 206010028417 myasthenia gravis Diseases 0.000 claims description 7
- 206010039073 rheumatoid arthritis Diseases 0.000 claims description 7
- 239000007787 solid Substances 0.000 claims description 7
- 230000029663 wound healing Effects 0.000 claims description 7
- 208000019693 Lung disease Diseases 0.000 claims description 6
- 206010027406 Mesothelioma Diseases 0.000 claims description 6
- 208000001333 Colorectal Neoplasms Diseases 0.000 claims description 4
- 101100454808 Caenorhabditis elegans lgg-2 gene Proteins 0.000 claims description 3
- 101100217502 Caenorhabditis elegans lgg-3 gene Proteins 0.000 claims description 3
- 208000025113 myeloid leukemia Diseases 0.000 claims description 2
- SGPGESCZOCHFCL-UHFFFAOYSA-N Tilisolol hydrochloride Chemical compound [Cl-].C1=CC=C2C(=O)N(C)C=C(OCC(O)C[NH2+]C(C)(C)C)C2=C1 SGPGESCZOCHFCL-UHFFFAOYSA-N 0.000 claims 2
- 102000051375 Chemerin-like receptor 1 Human genes 0.000 claims 1
- 208000021386 Sjogren Syndrome Diseases 0.000 claims 1
- 230000003111 delayed effect Effects 0.000 abstract description 12
- 230000003993 interaction Effects 0.000 abstract description 12
- AOPOCGPBAIARAV-OTBJXLELSA-N resolvin E1 Chemical compound CC[C@@H](O)\C=C\C=C/C[C@@H](O)\C=C\C=C\C=C/[C@@H](O)CCCC(O)=O AOPOCGPBAIARAV-OTBJXLELSA-N 0.000 abstract 1
- 101150001828 Cmklr1 gene Proteins 0.000 description 202
- 230000014509 gene expression Effects 0.000 description 73
- 210000002540 macrophage Anatomy 0.000 description 71
- 241000699670 Mus sp. Species 0.000 description 70
- 238000000034 method Methods 0.000 description 51
- AOPOCGPBAIARAV-OTBJXLELSA-M resolvin E1(1-) Chemical compound CC[C@@H](O)\C=C\C=C/C[C@@H](O)\C=C\C=C\C=C/[C@@H](O)CCCC([O-])=O AOPOCGPBAIARAV-OTBJXLELSA-M 0.000 description 45
- 238000004519 manufacturing process Methods 0.000 description 42
- 210000003622 mature neutrocyte Anatomy 0.000 description 40
- 210000000440 neutrophil Anatomy 0.000 description 40
- 102000004169 proteins and genes Human genes 0.000 description 36
- 108090000623 proteins and genes Proteins 0.000 description 36
- 206010009887 colitis Diseases 0.000 description 34
- 235000018102 proteins Nutrition 0.000 description 32
- 102000005962 receptors Human genes 0.000 description 31
- 108020003175 receptors Proteins 0.000 description 31
- 210000004443 dendritic cell Anatomy 0.000 description 28
- 208000011231 Crohn disease Diseases 0.000 description 27
- 241000699666 Mus <mouse, genus> Species 0.000 description 26
- 230000004913 activation Effects 0.000 description 26
- 206010009900 Colitis ulcerative Diseases 0.000 description 25
- 201000006704 Ulcerative Colitis Diseases 0.000 description 25
- 239000007924 injection Substances 0.000 description 25
- 238000002347 injection Methods 0.000 description 25
- 230000000770 proinflammatory effect Effects 0.000 description 23
- 102000004127 Cytokines Human genes 0.000 description 22
- 108090000695 Cytokines Proteins 0.000 description 22
- 102100024952 Protein CBFA2T1 Human genes 0.000 description 21
- 210000001744 T-lymphocyte Anatomy 0.000 description 20
- 210000004602 germ cell Anatomy 0.000 description 20
- 102100036301 C-C chemokine receptor type 7 Human genes 0.000 description 19
- 101000716065 Homo sapiens C-C chemokine receptor type 7 Proteins 0.000 description 19
- 210000001072 colon Anatomy 0.000 description 19
- 210000001616 monocyte Anatomy 0.000 description 19
- 108060003951 Immunoglobulin Proteins 0.000 description 18
- 102000018358 immunoglobulin Human genes 0.000 description 18
- 230000037361 pathway Effects 0.000 description 18
- 239000003814 drug Substances 0.000 description 17
- 229940124597 therapeutic agent Drugs 0.000 description 17
- 230000004968 inflammatory condition Effects 0.000 description 16
- 210000004962 mammalian cell Anatomy 0.000 description 16
- 230000002269 spontaneous effect Effects 0.000 description 16
- 230000005847 immunogenicity Effects 0.000 description 15
- 108020004707 nucleic acids Proteins 0.000 description 15
- 102000039446 nucleic acids Human genes 0.000 description 15
- 150000007523 nucleic acids Chemical class 0.000 description 15
- 238000012286 ELISA Assay Methods 0.000 description 14
- 238000004458 analytical method Methods 0.000 description 14
- 238000003556 assay Methods 0.000 description 14
- 230000004083 survival effect Effects 0.000 description 14
- 239000013598 vector Substances 0.000 description 14
- 240000002390 Pandanus odoratissimus Species 0.000 description 13
- 235000005311 Pandanus odoratissimus Nutrition 0.000 description 13
- 235000001014 amino acid Nutrition 0.000 description 13
- 238000000684 flow cytometry Methods 0.000 description 13
- 230000005764 inhibitory process Effects 0.000 description 13
- 230000002829 reductive effect Effects 0.000 description 13
- 238000001262 western blot Methods 0.000 description 13
- 102000003952 Caspase 3 Human genes 0.000 description 12
- 108090000397 Caspase 3 Proteins 0.000 description 12
- 150000001413 amino acids Chemical class 0.000 description 12
- 239000003795 chemical substances by application Substances 0.000 description 12
- 230000007423 decrease Effects 0.000 description 12
- 230000007547 defect Effects 0.000 description 12
- 230000007170 pathology Effects 0.000 description 12
- 238000002965 ELISA Methods 0.000 description 11
- 230000006907 apoptotic process Effects 0.000 description 11
- 239000000872 buffer Substances 0.000 description 11
- 230000035772 mutation Effects 0.000 description 11
- 230000010287 polarization Effects 0.000 description 11
- 230000008569 process Effects 0.000 description 11
- 239000006228 supernatant Substances 0.000 description 11
- 101001018097 Homo sapiens L-selectin Proteins 0.000 description 10
- 102100033467 L-selectin Human genes 0.000 description 10
- 208000006673 asthma Diseases 0.000 description 10
- 238000001943 fluorescence-activated cell sorting Methods 0.000 description 10
- 239000008194 pharmaceutical composition Substances 0.000 description 10
- 210000004978 chinese hamster ovary cell Anatomy 0.000 description 9
- 239000013066 combination product Substances 0.000 description 9
- 229940127555 combination product Drugs 0.000 description 9
- 230000001506 immunosuppresive effect Effects 0.000 description 9
- 230000001965 increasing effect Effects 0.000 description 9
- 230000005012 migration Effects 0.000 description 9
- 238000013508 migration Methods 0.000 description 9
- 230000031972 neutrophil apoptotic process Effects 0.000 description 9
- 102100031650 C-X-C chemokine receptor type 4 Human genes 0.000 description 8
- 101000922348 Homo sapiens C-X-C chemokine receptor type 4 Proteins 0.000 description 8
- 230000004071 biological effect Effects 0.000 description 8
- 238000001574 biopsy Methods 0.000 description 8
- 230000001976 improved effect Effects 0.000 description 8
- 239000000203 mixture Substances 0.000 description 8
- 210000000066 myeloid cell Anatomy 0.000 description 8
- 238000002560 therapeutic procedure Methods 0.000 description 8
- -1 CAR-T cells) Substances 0.000 description 7
- 108010087819 Fc receptors Proteins 0.000 description 7
- 102000009109 Fc receptors Human genes 0.000 description 7
- 101001138127 Homo sapiens Immunoglobulin kappa variable 1-13 Proteins 0.000 description 7
- 102100020772 Immunoglobulin kappa variable 1-13 Human genes 0.000 description 7
- 102100037850 Interferon gamma Human genes 0.000 description 7
- 108010074328 Interferon-gamma Proteins 0.000 description 7
- 206010027476 Metastases Diseases 0.000 description 7
- 241001465754 Metazoa Species 0.000 description 7
- 241001529936 Murinae Species 0.000 description 7
- 108700012920 TNF Proteins 0.000 description 7
- 239000012190 activator Substances 0.000 description 7
- 230000003110 anti-inflammatory effect Effects 0.000 description 7
- 239000003246 corticosteroid Substances 0.000 description 7
- 229960001334 corticosteroids Drugs 0.000 description 7
- 210000000416 exudates and transudate Anatomy 0.000 description 7
- 239000001963 growth medium Substances 0.000 description 7
- 239000002955 immunomodulating agent Substances 0.000 description 7
- 238000011534 incubation Methods 0.000 description 7
- 230000001939 inductive effect Effects 0.000 description 7
- 229960000598 infliximab Drugs 0.000 description 7
- 208000032839 leukemia Diseases 0.000 description 7
- 210000004072 lung Anatomy 0.000 description 7
- 230000035800 maturation Effects 0.000 description 7
- 230000009401 metastasis Effects 0.000 description 7
- 238000010172 mouse model Methods 0.000 description 7
- 230000004044 response Effects 0.000 description 7
- 238000010186 staining Methods 0.000 description 7
- 230000035899 viability Effects 0.000 description 7
- BTBUEUYNUDRHOZ-UHFFFAOYSA-N Borate Chemical compound [O-]B([O-])[O-] BTBUEUYNUDRHOZ-UHFFFAOYSA-N 0.000 description 6
- 208000025721 COVID-19 Diseases 0.000 description 6
- 241000711573 Coronaviridae Species 0.000 description 6
- 208000014997 Crohn colitis Diseases 0.000 description 6
- 241000283074 Equus asinus Species 0.000 description 6
- OHCQJHSOBUTRHG-KGGHGJDLSA-N FORSKOLIN Chemical compound O=C([C@@]12O)C[C@](C)(C=C)O[C@]1(C)[C@@H](OC(=O)C)[C@@H](O)[C@@H]1[C@]2(C)[C@@H](O)CCC1(C)C OHCQJHSOBUTRHG-KGGHGJDLSA-N 0.000 description 6
- 102000003814 Interleukin-10 Human genes 0.000 description 6
- 108090000174 Interleukin-10 Proteins 0.000 description 6
- 229920000392 Zymosan Polymers 0.000 description 6
- 239000003242 anti bacterial agent Substances 0.000 description 6
- 229940088710 antibiotic agent Drugs 0.000 description 6
- 230000015572 biosynthetic process Effects 0.000 description 6
- 230000002708 enhancing effect Effects 0.000 description 6
- 210000003714 granulocyte Anatomy 0.000 description 6
- 210000002865 immune cell Anatomy 0.000 description 6
- 229940126533 immune checkpoint blocker Drugs 0.000 description 6
- 239000003446 ligand Substances 0.000 description 6
- 239000000463 material Substances 0.000 description 6
- 239000002609 medium Substances 0.000 description 6
- 239000000546 pharmaceutical excipient Substances 0.000 description 6
- 239000003642 reactive oxygen metabolite Substances 0.000 description 6
- 208000011580 syndromic disease Diseases 0.000 description 6
- 210000001519 tissue Anatomy 0.000 description 6
- 238000012546 transfer Methods 0.000 description 6
- 230000003612 virological effect Effects 0.000 description 6
- TVZRAEYQIKYCPH-UHFFFAOYSA-N 3-(trimethylsilyl)propane-1-sulfonic acid Chemical compound C[Si](C)(C)CCCS(O)(=O)=O TVZRAEYQIKYCPH-UHFFFAOYSA-N 0.000 description 5
- 102000004190 Enzymes Human genes 0.000 description 5
- 108090000790 Enzymes Proteins 0.000 description 5
- 206010062016 Immunosuppression Diseases 0.000 description 5
- 101150036449 SIRPA gene Proteins 0.000 description 5
- 239000002671 adjuvant Substances 0.000 description 5
- 230000037396 body weight Effects 0.000 description 5
- 210000002798 bone marrow cell Anatomy 0.000 description 5
- OETYBDQHOHLNBH-GNXGYILWSA-N c7 peptide Chemical compound C([C@@H](C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CC(C)C)C(=O)NCC(=O)N1[C@@H](CCC1)C(=O)N[C@H](CCCNC(N)=N)C(=O)N1[C@@H](CCC1)C(=O)N[C@@H](CCCCN)C(=O)N1[C@@H](CCC1)C(=O)N[C@@H](CCC(N)=O)C(=O)N[C@@H](CCC(N)=O)C(=O)N[C@H](CC=1C2=CC=CC=C2NC=1)C(=O)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CC(C)C)NC(=O)[C@@H](CC=1C2=CC=CC=C2NC=1)NC(=O)[C@@H](N)CC=1C=CC=CC=1)NC(=O)CNC(=O)[C@H](C)NC(=O)[C@H](CO)NC(=O)[C@H](CC(N)=O)NC(=O)[C@H](CC(C)C)NC(=O)[C@@H](NC(=O)[C@H](CC=1C2=CC=CC=C2NC=1)NC(=O)CN)[C@@H](C)O)C1=CC=C(O)C=C1 OETYBDQHOHLNBH-GNXGYILWSA-N 0.000 description 5
- 238000007796 conventional method Methods 0.000 description 5
- 230000034994 death Effects 0.000 description 5
- 230000001419 dependent effect Effects 0.000 description 5
- 238000011161 development Methods 0.000 description 5
- 230000018109 developmental process Effects 0.000 description 5
- 229940088598 enzyme Drugs 0.000 description 5
- 238000002474 experimental method Methods 0.000 description 5
- 108010032877 galanin (1-13)-spantide amide Proteins 0.000 description 5
- DOUYETYNHWVLEO-UHFFFAOYSA-N imiquimod Chemical compound C1=CC=CC2=C3N(CC(C)C)C=NC3=C(N)N=C21 DOUYETYNHWVLEO-UHFFFAOYSA-N 0.000 description 5
- 230000006872 improvement Effects 0.000 description 5
- 230000006698 induction Effects 0.000 description 5
- 230000000977 initiatory effect Effects 0.000 description 5
- 239000003550 marker Substances 0.000 description 5
- 102000013415 peroxidase activity proteins Human genes 0.000 description 5
- 108040007629 peroxidase activity proteins Proteins 0.000 description 5
- 239000004033 plastic Substances 0.000 description 5
- 108091033319 polynucleotide Proteins 0.000 description 5
- 102000040430 polynucleotide Human genes 0.000 description 5
- 239000002157 polynucleotide Substances 0.000 description 5
- 239000000243 solution Substances 0.000 description 5
- 230000008685 targeting Effects 0.000 description 5
- 238000012360 testing method Methods 0.000 description 5
- 230000005748 tumor development Effects 0.000 description 5
- 238000005406 washing Methods 0.000 description 5
- 230000004580 weight loss Effects 0.000 description 5
- YBJHBAHKTGYVGT-ZKWXMUAHSA-N (+)-Biotin Chemical compound N1C(=O)N[C@@H]2[C@H](CCCCC(=O)O)SC[C@@H]21 YBJHBAHKTGYVGT-ZKWXMUAHSA-N 0.000 description 4
- NHJVRSWLHSJWIN-UHFFFAOYSA-N 2,4,6-trinitrobenzenesulfonic acid Chemical compound OS(=O)(=O)C1=C([N+]([O-])=O)C=C([N+]([O-])=O)C=C1[N+]([O-])=O NHJVRSWLHSJWIN-UHFFFAOYSA-N 0.000 description 4
- 108091006027 G proteins Proteins 0.000 description 4
- 102000003688 G-Protein-Coupled Receptors Human genes 0.000 description 4
- 108090000045 G-Protein-Coupled Receptors Proteins 0.000 description 4
- 102000030782 GTP binding Human genes 0.000 description 4
- 108091000058 GTP-Binding Proteins 0.000 description 4
- WQZGKKKJIJFFOK-GASJEMHNSA-N Glucose Natural products OC[C@H]1OC(O)[C@H](O)[C@@H](O)[C@@H]1O WQZGKKKJIJFFOK-GASJEMHNSA-N 0.000 description 4
- 206010019668 Hepatic fibrosis Diseases 0.000 description 4
- 102000018071 Immunoglobulin Fc Fragments Human genes 0.000 description 4
- 108010091135 Immunoglobulin Fc Fragments Proteins 0.000 description 4
- 108010021625 Immunoglobulin Fragments Proteins 0.000 description 4
- 102000008394 Immunoglobulin Fragments Human genes 0.000 description 4
- 230000003044 adaptive effect Effects 0.000 description 4
- 229940060265 aldara Drugs 0.000 description 4
- 239000005557 antagonist Substances 0.000 description 4
- 230000001363 autoimmune Effects 0.000 description 4
- 210000003719 b-lymphocyte Anatomy 0.000 description 4
- 230000008827 biological function Effects 0.000 description 4
- 210000004369 blood Anatomy 0.000 description 4
- 239000008280 blood Substances 0.000 description 4
- 210000001185 bone marrow Anatomy 0.000 description 4
- 238000006243 chemical reaction Methods 0.000 description 4
- 230000003247 decreasing effect Effects 0.000 description 4
- 239000008103 glucose Substances 0.000 description 4
- ZDXPYRJPNDTMRX-UHFFFAOYSA-N glutamine Natural products OC(=O)C(N)CCC(N)=O ZDXPYRJPNDTMRX-UHFFFAOYSA-N 0.000 description 4
- 125000002924 primary amino group Chemical group [H]N([H])* 0.000 description 4
- 208000005069 pulmonary fibrosis Diseases 0.000 description 4
- 238000011002 quantification Methods 0.000 description 4
- 230000007115 recruitment Effects 0.000 description 4
- 239000000126 substance Substances 0.000 description 4
- 230000004614 tumor growth Effects 0.000 description 4
- 229960004914 vedolizumab Drugs 0.000 description 4
- MZOFCQQQCNRIBI-VMXHOPILSA-N (3s)-4-[[(2s)-1-[[(2s)-1-[[(1s)-1-carboxy-2-hydroxyethyl]amino]-4-methyl-1-oxopentan-2-yl]amino]-5-(diaminomethylideneamino)-1-oxopentan-2-yl]amino]-3-[[2-[[(2s)-2,6-diaminohexanoyl]amino]acetyl]amino]-4-oxobutanoic acid Chemical compound OC[C@@H](C(O)=O)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CCCN=C(N)N)NC(=O)[C@H](CC(O)=O)NC(=O)CNC(=O)[C@@H](N)CCCCN MZOFCQQQCNRIBI-VMXHOPILSA-N 0.000 description 3
- 241000894006 Bacteria Species 0.000 description 3
- 101150097775 CMLKR1 gene Proteins 0.000 description 3
- 102100035360 Cerebellar degeneration-related antigen 1 Human genes 0.000 description 3
- SUZLHDUTVMZSEV-UHFFFAOYSA-N Deoxycoleonol Natural products C12C(=O)CC(C)(C=C)OC2(C)C(OC(=O)C)C(O)C2C1(C)C(O)CCC2(C)C SUZLHDUTVMZSEV-UHFFFAOYSA-N 0.000 description 3
- 238000012413 Fluorescence activated cell sorting analysis Methods 0.000 description 3
- 101001037140 Homo sapiens Immunoglobulin heavy variable 3-23 Proteins 0.000 description 3
- 108700005091 Immunoglobulin Genes Proteins 0.000 description 3
- 102100040220 Immunoglobulin heavy variable 3-23 Human genes 0.000 description 3
- PIWKPBJCKXDKJR-UHFFFAOYSA-N Isoflurane Chemical compound FC(F)OC(Cl)C(F)(F)F PIWKPBJCKXDKJR-UHFFFAOYSA-N 0.000 description 3
- 241000124008 Mammalia Species 0.000 description 3
- 101100226902 Mus musculus Fcrlb gene Proteins 0.000 description 3
- 239000012979 RPMI medium Substances 0.000 description 3
- 239000006146 Roswell Park Memorial Institute medium Substances 0.000 description 3
- 101000844753 Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) DNA-binding protein 7d Proteins 0.000 description 3
- 239000012505 Superdex™ Substances 0.000 description 3
- 108700019146 Transgenes Proteins 0.000 description 3
- 108060008682 Tumor Necrosis Factor Proteins 0.000 description 3
- 102000000852 Tumor Necrosis Factor-alpha Human genes 0.000 description 3
- 238000005415 bioluminescence Methods 0.000 description 3
- 230000029918 bioluminescence Effects 0.000 description 3
- 125000003178 carboxy group Chemical group [H]OC(*)=O 0.000 description 3
- 239000003153 chemical reaction reagent Substances 0.000 description 3
- KRKNYBCHXYNGOX-UHFFFAOYSA-N citric acid Chemical compound OC(=O)CC(O)(C(O)=O)CC(O)=O KRKNYBCHXYNGOX-UHFFFAOYSA-N 0.000 description 3
- OHCQJHSOBUTRHG-UHFFFAOYSA-N colforsin Natural products OC12C(=O)CC(C)(C=C)OC1(C)C(OC(=O)C)C(O)C1C2(C)C(O)CCC1(C)C OHCQJHSOBUTRHG-UHFFFAOYSA-N 0.000 description 3
- 239000010432 diamond Substances 0.000 description 3
- 239000003085 diluting agent Substances 0.000 description 3
- 238000010790 dilution Methods 0.000 description 3
- 239000012895 dilution Substances 0.000 description 3
- 239000003937 drug carrier Substances 0.000 description 3
- 201000002491 encephalomyelitis Diseases 0.000 description 3
- 238000005516 engineering process Methods 0.000 description 3
- 210000002950 fibroblast Anatomy 0.000 description 3
- 230000006870 function Effects 0.000 description 3
- 238000002523 gelfiltration Methods 0.000 description 3
- 230000012010 growth Effects 0.000 description 3
- 239000003102 growth factor Substances 0.000 description 3
- 206010073071 hepatocellular carcinoma Diseases 0.000 description 3
- 238000003018 immunoassay Methods 0.000 description 3
- 229940072221 immunoglobulins Drugs 0.000 description 3
- 229960002725 isoflurane Drugs 0.000 description 3
- 150000002632 lipids Chemical class 0.000 description 3
- 230000001404 mediated effect Effects 0.000 description 3
- 239000012528 membrane Substances 0.000 description 3
- 238000010197 meta-analysis Methods 0.000 description 3
- 230000004048 modification Effects 0.000 description 3
- 238000012986 modification Methods 0.000 description 3
- 210000000822 natural killer cell Anatomy 0.000 description 3
- 238000002823 phage display Methods 0.000 description 3
- 230000026731 phosphorylation Effects 0.000 description 3
- 238000006366 phosphorylation reaction Methods 0.000 description 3
- 239000013612 plasmid Substances 0.000 description 3
- 230000008092 positive effect Effects 0.000 description 3
- 239000000047 product Substances 0.000 description 3
- 238000002702 ribosome display Methods 0.000 description 3
- 238000012216 screening Methods 0.000 description 3
- 241000894007 species Species 0.000 description 3
- 238000006467 substitution reaction Methods 0.000 description 3
- 238000003786 synthesis reaction Methods 0.000 description 3
- 230000001173 tumoral effect Effects 0.000 description 3
- NFGXHKASABOEEW-UHFFFAOYSA-N 1-methylethyl 11-methoxy-3,7,11-trimethyl-2,4-dodecadienoate Chemical compound COC(C)(C)CCCC(C)CC=CC(C)=CC(=O)OC(C)C NFGXHKASABOEEW-UHFFFAOYSA-N 0.000 description 2
- 102000014777 Adipokines Human genes 0.000 description 2
- 108010078606 Adipokines Proteins 0.000 description 2
- 230000007730 Akt signaling Effects 0.000 description 2
- 108091023037 Aptamer Proteins 0.000 description 2
- 101100450694 Arabidopsis thaliana HFR1 gene Proteins 0.000 description 2
- 108091008875 B cell receptors Proteins 0.000 description 2
- 102220533532 Baculoviral IAP repeat-containing protein 1_T52S_mutation Human genes 0.000 description 2
- 206010006187 Breast cancer Diseases 0.000 description 2
- 208000026310 Breast neoplasm Diseases 0.000 description 2
- 108010029697 CD40 Ligand Proteins 0.000 description 2
- 229940123189 CD40 agonist Drugs 0.000 description 2
- 102100032937 CD40 ligand Human genes 0.000 description 2
- 102000019034 Chemokines Human genes 0.000 description 2
- 108010012236 Chemokines Proteins 0.000 description 2
- 206010016654 Fibrosis Diseases 0.000 description 2
- 108010017213 Granulocyte-Macrophage Colony-Stimulating Factor Proteins 0.000 description 2
- 102100039620 Granulocyte-macrophage colony-stimulating factor Human genes 0.000 description 2
- 101001019455 Homo sapiens ICOS ligand Proteins 0.000 description 2
- 101000998947 Homo sapiens Immunoglobulin heavy variable 1-46 Proteins 0.000 description 2
- 101000989065 Homo sapiens Immunoglobulin heavy variable 7-4-1 Proteins 0.000 description 2
- 101001090250 Homo sapiens Immunoglobulin kappa variable 6-21 Proteins 0.000 description 2
- 101001046686 Homo sapiens Integrin alpha-M Proteins 0.000 description 2
- 102100034980 ICOS ligand Human genes 0.000 description 2
- 102100036888 Immunoglobulin heavy variable 1-46 Human genes 0.000 description 2
- 102100029420 Immunoglobulin heavy variable 7-4-1 Human genes 0.000 description 2
- 102100034806 Immunoglobulin kappa variable 6-21 Human genes 0.000 description 2
- 102100022338 Integrin alpha-M Human genes 0.000 description 2
- 108010065805 Interleukin-12 Proteins 0.000 description 2
- 102000013462 Interleukin-12 Human genes 0.000 description 2
- 108090000978 Interleukin-4 Proteins 0.000 description 2
- 229930184725 Lipoxin Natural products 0.000 description 2
- 108091028043 Nucleic acid sequence Proteins 0.000 description 2
- 208000008589 Obesity Diseases 0.000 description 2
- 239000004365 Protease Substances 0.000 description 2
- 241000700605 Viruses Species 0.000 description 2
- 230000003213 activating effect Effects 0.000 description 2
- 210000001789 adipocyte Anatomy 0.000 description 2
- 239000000478 adipokine Substances 0.000 description 2
- 230000011759 adipose tissue development Effects 0.000 description 2
- 230000000259 anti-tumor effect Effects 0.000 description 2
- 239000003173 antianemic agent Substances 0.000 description 2
- 229940125644 antibody drug Drugs 0.000 description 2
- 210000000612 antigen-presenting cell Anatomy 0.000 description 2
- 239000002246 antineoplastic agent Substances 0.000 description 2
- 229960002685 biotin Drugs 0.000 description 2
- 235000020958 biotin Nutrition 0.000 description 2
- 239000011616 biotin Substances 0.000 description 2
- 238000009566 cancer vaccine Methods 0.000 description 2
- 229940022399 cancer vaccine Drugs 0.000 description 2
- 238000002659 cell therapy Methods 0.000 description 2
- 230000001413 cellular effect Effects 0.000 description 2
- 210000003169 central nervous system Anatomy 0.000 description 2
- 230000008859 change Effects 0.000 description 2
- 230000006020 chronic inflammation Effects 0.000 description 2
- 238000003776 cleavage reaction Methods 0.000 description 2
- 229940000425 combination drug Drugs 0.000 description 2
- 238000002648 combination therapy Methods 0.000 description 2
- 238000010276 construction Methods 0.000 description 2
- 229940127089 cytotoxic agent Drugs 0.000 description 2
- 230000006378 damage Effects 0.000 description 2
- 230000029087 digestion Effects 0.000 description 2
- 229940000406 drug candidate Drugs 0.000 description 2
- 230000009977 dual effect Effects 0.000 description 2
- 229940125367 erythropoiesis stimulating agent Drugs 0.000 description 2
- 230000001747 exhibiting effect Effects 0.000 description 2
- 239000013613 expression plasmid Substances 0.000 description 2
- 239000013604 expression vector Substances 0.000 description 2
- 230000004761 fibrosis Effects 0.000 description 2
- 230000003176 fibrotic effect Effects 0.000 description 2
- 108020001507 fusion proteins Proteins 0.000 description 2
- 102000037865 fusion proteins Human genes 0.000 description 2
- 239000008273 gelatin Substances 0.000 description 2
- 229920000159 gelatin Polymers 0.000 description 2
- 230000036541 health Effects 0.000 description 2
- 208000035861 hematochezia Diseases 0.000 description 2
- 238000003384 imaging method Methods 0.000 description 2
- 238000000126 in silico method Methods 0.000 description 2
- 230000008595 infiltration Effects 0.000 description 2
- 238000001764 infiltration Methods 0.000 description 2
- 230000028709 inflammatory response Effects 0.000 description 2
- 239000003112 inhibitor Substances 0.000 description 2
- 238000011081 inoculation Methods 0.000 description 2
- 238000007912 intraperitoneal administration Methods 0.000 description 2
- 239000007928 intraperitoneal injection Substances 0.000 description 2
- 238000002955 isolation Methods 0.000 description 2
- 210000000265 leukocyte Anatomy 0.000 description 2
- 150000002639 lipoxins Chemical class 0.000 description 2
- 210000005075 mammary gland Anatomy 0.000 description 2
- 238000005259 measurement Methods 0.000 description 2
- 210000004877 mucosa Anatomy 0.000 description 2
- 235000020824 obesity Nutrition 0.000 description 2
- 230000002018 overexpression Effects 0.000 description 2
- 230000036961 partial effect Effects 0.000 description 2
- 210000003819 peripheral blood mononuclear cell Anatomy 0.000 description 2
- 230000003389 potentiating effect Effects 0.000 description 2
- 230000004647 pro-inflammatory pathway Effects 0.000 description 2
- 239000006041 probiotic Substances 0.000 description 2
- 235000018291 probiotics Nutrition 0.000 description 2
- 238000001959 radiotherapy Methods 0.000 description 2
- 229940044601 receptor agonist Drugs 0.000 description 2
- 239000000018 receptor agonist Substances 0.000 description 2
- 238000011084 recovery Methods 0.000 description 2
- 230000007017 scission Effects 0.000 description 2
- 210000005212 secondary lymphoid organ Anatomy 0.000 description 2
- 230000011664 signaling Effects 0.000 description 2
- 239000002356 single layer Substances 0.000 description 2
- 239000000758 substrate Substances 0.000 description 2
- 229940021747 therapeutic vaccine Drugs 0.000 description 2
- 210000003462 vein Anatomy 0.000 description 2
- XLYOFNOQVPJJNP-UHFFFAOYSA-N water Substances O XLYOFNOQVPJJNP-UHFFFAOYSA-N 0.000 description 2
- 108091032973 (ribonucleotides)n+m Proteins 0.000 description 1
- QAPSNMNOIOSXSQ-YNEHKIRRSA-N 1-[(2r,4s,5r)-4-[tert-butyl(dimethyl)silyl]oxy-5-(hydroxymethyl)oxolan-2-yl]-5-methylpyrimidine-2,4-dione Chemical compound O=C1NC(=O)C(C)=CN1[C@@H]1O[C@H](CO)[C@@H](O[Si](C)(C)C(C)(C)C)C1 QAPSNMNOIOSXSQ-YNEHKIRRSA-N 0.000 description 1
- UAIUNKRWKOVEES-UHFFFAOYSA-N 3,3',5,5'-tetramethylbenzidine Chemical compound CC1=C(N)C(C)=CC(C=2C=C(C)C(N)=C(C)C=2)=C1 UAIUNKRWKOVEES-UHFFFAOYSA-N 0.000 description 1
- 108010088751 Albumins Proteins 0.000 description 1
- 102000009027 Albumins Human genes 0.000 description 1
- 108090000672 Annexin A5 Proteins 0.000 description 1
- 102100034283 Annexin A5 Human genes 0.000 description 1
- 101100255935 Arabidopsis thaliana RVE1 gene Proteins 0.000 description 1
- 101100004028 Avena sativa P60A gene Proteins 0.000 description 1
- DGAKHGXRMXWHBX-ONEGZZNKSA-N Azoxymethane Chemical compound C\N=[N+](/C)[O-] DGAKHGXRMXWHBX-ONEGZZNKSA-N 0.000 description 1
- 108010017384 Blood Proteins Proteins 0.000 description 1
- 102000004506 Blood Proteins Human genes 0.000 description 1
- 101150073986 C3AR1 gene Proteins 0.000 description 1
- 101800001654 C5a anaphylatoxin Proteins 0.000 description 1
- 108010017158 CCR7 Receptors Proteins 0.000 description 1
- 102000004428 CCR7 Receptors Human genes 0.000 description 1
- 101150013553 CD40 gene Proteins 0.000 description 1
- 102220513171 CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 2_N92Q_mutation Human genes 0.000 description 1
- 102000014914 Carrier Proteins Human genes 0.000 description 1
- 102000009410 Chemokine receptor Human genes 0.000 description 1
- 108050000299 Chemokine receptor Proteins 0.000 description 1
- 241000282552 Chlorocebus aethiops Species 0.000 description 1
- 102220465972 Cilium assembly protein DZIP1_S24R_mutation Human genes 0.000 description 1
- 102000007644 Colony-Stimulating Factors Human genes 0.000 description 1
- 108010071942 Colony-Stimulating Factors Proteins 0.000 description 1
- 241001625326 Commellus colon Species 0.000 description 1
- 208000035473 Communicable disease Diseases 0.000 description 1
- 102100031506 Complement C5 Human genes 0.000 description 1
- 241000699802 Cricetulus griseus Species 0.000 description 1
- CMSMOCZEIVJLDB-UHFFFAOYSA-N Cyclophosphamide Chemical compound ClCCN(CCCl)P1(=O)NCCCO1 CMSMOCZEIVJLDB-UHFFFAOYSA-N 0.000 description 1
- 108020004414 DNA Proteins 0.000 description 1
- 229940021995 DNA vaccine Drugs 0.000 description 1
- 102000052510 DNA-Binding Proteins Human genes 0.000 description 1
- 101710096438 DNA-binding protein Proteins 0.000 description 1
- 108700022150 Designed Ankyrin Repeat Proteins Proteins 0.000 description 1
- BWGNESOTFCXPMA-UHFFFAOYSA-N Dihydrogen disulfide Chemical compound SS BWGNESOTFCXPMA-UHFFFAOYSA-N 0.000 description 1
- 238000008157 ELISA kit Methods 0.000 description 1
- 241000196324 Embryophyta Species 0.000 description 1
- 108010076288 Formyl peptide receptors Proteins 0.000 description 1
- 102000011652 Formyl peptide receptors Human genes 0.000 description 1
- 241000233866 Fungi Species 0.000 description 1
- 101710196151 Gamma-glutamyl phosphate reductase 1 Proteins 0.000 description 1
- 206010064147 Gastrointestinal inflammation Diseases 0.000 description 1
- 108010010803 Gelatin Proteins 0.000 description 1
- 108700039691 Genetic Promoter Regions Proteins 0.000 description 1
- 241000238631 Hexapoda Species 0.000 description 1
- 101001047617 Homo sapiens Immunoglobulin kappa variable 3-11 Proteins 0.000 description 1
- 101000946889 Homo sapiens Monocyte differentiation antigen CD14 Proteins 0.000 description 1
- 101000829761 Homo sapiens N-arachidonyl glycine receptor Proteins 0.000 description 1
- 101001009517 Homo sapiens Probable G-protein coupled receptor 32 Proteins 0.000 description 1
- 101001117317 Homo sapiens Programmed cell death 1 ligand 1 Proteins 0.000 description 1
- 101000914484 Homo sapiens T-lymphocyte activation antigen CD80 Proteins 0.000 description 1
- 206010053317 Hydrophobia Diseases 0.000 description 1
- 108091058560 IL8 Proteins 0.000 description 1
- 229940076838 Immune checkpoint inhibitor Drugs 0.000 description 1
- 108091008036 Immune checkpoint proteins Proteins 0.000 description 1
- 102000037982 Immune checkpoint proteins Human genes 0.000 description 1
- 108010054477 Immunoglobulin Fab Fragments Proteins 0.000 description 1
- 102000001706 Immunoglobulin Fab Fragments Human genes 0.000 description 1
- 102000012745 Immunoglobulin Subunits Human genes 0.000 description 1
- 108010079585 Immunoglobulin Subunits Proteins 0.000 description 1
- 108010067060 Immunoglobulin Variable Region Proteins 0.000 description 1
- 102000017727 Immunoglobulin Variable Region Human genes 0.000 description 1
- 102100022955 Immunoglobulin kappa variable 3-11 Human genes 0.000 description 1
- 102000004890 Interleukin-8 Human genes 0.000 description 1
- 108090001007 Interleukin-8 Proteins 0.000 description 1
- YQEZLKZALYSWHR-UHFFFAOYSA-N Ketamine Chemical compound C=1C=CC=C(Cl)C=1C1(NC)CCCCC1=O YQEZLKZALYSWHR-UHFFFAOYSA-N 0.000 description 1
- 241001197082 Knodus beta Species 0.000 description 1
- 102000019298 Lipocalin Human genes 0.000 description 1
- 108050006654 Lipocalin Proteins 0.000 description 1
- 208000007433 Lymphatic Metastasis Diseases 0.000 description 1
- 241000282553 Macaca Species 0.000 description 1
- 208000001145 Metabolic Syndrome Diseases 0.000 description 1
- 102100035877 Monocyte differentiation antigen CD14 Human genes 0.000 description 1
- 102100023302 Myelin-oligodendrocyte glycoprotein Human genes 0.000 description 1
- 108010008211 N-Formylmethionine Leucyl-Phenylalanine Proteins 0.000 description 1
- 102100023414 N-arachidonyl glycine receptor Human genes 0.000 description 1
- 108010057466 NF-kappa B Proteins 0.000 description 1
- 102000003945 NF-kappa B Human genes 0.000 description 1
- 239000000020 Nitrocellulose Substances 0.000 description 1
- 241000283973 Oryctolagus cuniculus Species 0.000 description 1
- 102220517210 P antigen family member 4_T51A_mutation Human genes 0.000 description 1
- 102000016387 Pancreatic elastase Human genes 0.000 description 1
- 108010067372 Pancreatic elastase Proteins 0.000 description 1
- 108090000526 Papain Proteins 0.000 description 1
- 102000057297 Pepsin A Human genes 0.000 description 1
- 108090000284 Pepsin A Proteins 0.000 description 1
- 102000035195 Peptidases Human genes 0.000 description 1
- 108091005804 Peptidases Proteins 0.000 description 1
- 206010057249 Phagocytosis Diseases 0.000 description 1
- 102100030321 Probable G-protein coupled receptor 32 Human genes 0.000 description 1
- 102100024216 Programmed cell death 1 ligand 1 Human genes 0.000 description 1
- 108010076504 Protein Sorting Signals Proteins 0.000 description 1
- 102100033810 RAC-alpha serine/threonine-protein kinase Human genes 0.000 description 1
- 239000012083 RIPA buffer Substances 0.000 description 1
- 229940022005 RNA vaccine Drugs 0.000 description 1
- 241000700159 Rattus Species 0.000 description 1
- 231100000991 Reactive Oxygen Species (ROS) Photosafety Assay Toxicity 0.000 description 1
- 102220472894 Receptor-type tyrosine-protein phosphatase beta_R94K_mutation Human genes 0.000 description 1
- 108020004511 Recombinant DNA Proteins 0.000 description 1
- 108700008625 Reporter Genes Proteins 0.000 description 1
- 102220485514 Rhodopsin_M33L_mutation Human genes 0.000 description 1
- 241000283984 Rodentia Species 0.000 description 1
- 240000004808 Saccharomyces cerevisiae Species 0.000 description 1
- 108010003723 Single-Domain Antibodies Proteins 0.000 description 1
- 241000205098 Sulfolobus acidocaldarius Species 0.000 description 1
- 201000009594 Systemic Scleroderma Diseases 0.000 description 1
- 206010042953 Systemic sclerosis Diseases 0.000 description 1
- 102100027222 T-lymphocyte activation antigen CD80 Human genes 0.000 description 1
- 108091023040 Transcription factor Proteins 0.000 description 1
- 102000040945 Transcription factor Human genes 0.000 description 1
- 102100040245 Tumor necrosis factor receptor superfamily member 5 Human genes 0.000 description 1
- 102220532165 WW domain-binding protein 11_Y53S_mutation Human genes 0.000 description 1
- 208000027418 Wounds and injury Diseases 0.000 description 1
- 210000001015 abdomen Anatomy 0.000 description 1
- 201000000690 abdominal obesity-metabolic syndrome Diseases 0.000 description 1
- 230000009471 action Effects 0.000 description 1
- 208000038016 acute inflammation Diseases 0.000 description 1
- 230000006022 acute inflammation Effects 0.000 description 1
- 230000001270 agonistic effect Effects 0.000 description 1
- 230000003321 amplification Effects 0.000 description 1
- 210000004102 animal cell Anatomy 0.000 description 1
- 238000010171 animal model Methods 0.000 description 1
- 230000003466 anti-cipated effect Effects 0.000 description 1
- 230000002001 anti-metastasis Effects 0.000 description 1
- 238000003782 apoptosis assay Methods 0.000 description 1
- 230000025194 apoptotic cell clearance Effects 0.000 description 1
- 238000013459 approach Methods 0.000 description 1
- 210000004507 artificial chromosome Anatomy 0.000 description 1
- 230000001580 bacterial effect Effects 0.000 description 1
- 239000011324 bead Substances 0.000 description 1
- 230000008901 benefit Effects 0.000 description 1
- 108091008324 binding proteins Proteins 0.000 description 1
- 238000002306 biochemical method Methods 0.000 description 1
- 230000003115 biocidal effect Effects 0.000 description 1
- 230000008512 biological response Effects 0.000 description 1
- 210000000988 bone and bone Anatomy 0.000 description 1
- 210000004979 bone marrow derived macrophage Anatomy 0.000 description 1
- 102220383642 c.212A>T Human genes 0.000 description 1
- 230000003491 cAMP production Effects 0.000 description 1
- 230000009084 cardiovascular function Effects 0.000 description 1
- 235000010418 carrageenan Nutrition 0.000 description 1
- 239000000679 carrageenan Substances 0.000 description 1
- 229920001525 carrageenan Polymers 0.000 description 1
- 229940113118 carrageenan Drugs 0.000 description 1
- 230000020411 cell activation Effects 0.000 description 1
- 238000004113 cell culture Methods 0.000 description 1
- 239000002771 cell marker Substances 0.000 description 1
- 239000006285 cell suspension Substances 0.000 description 1
- 239000002975 chemoattractant Substances 0.000 description 1
- 230000035605 chemotaxis Effects 0.000 description 1
- 238000004587 chromatography analysis Methods 0.000 description 1
- 210000003690 classically activated macrophage Anatomy 0.000 description 1
- 230000007012 clinical effect Effects 0.000 description 1
- 238000011260 co-administration Methods 0.000 description 1
- 239000011248 coating agent Substances 0.000 description 1
- 238000000576 coating method Methods 0.000 description 1
- 208000029742 colonic neoplasm Diseases 0.000 description 1
- 230000000295 complement effect Effects 0.000 description 1
- 239000000356 contaminant Substances 0.000 description 1
- 230000008602 contraction Effects 0.000 description 1
- 239000006071 cream Substances 0.000 description 1
- 238000005520 cutting process Methods 0.000 description 1
- 229960004397 cyclophosphamide Drugs 0.000 description 1
- 238000004163 cytometry Methods 0.000 description 1
- 230000001086 cytosolic effect Effects 0.000 description 1
- 230000001472 cytotoxic effect Effects 0.000 description 1
- 230000003013 cytotoxicity Effects 0.000 description 1
- 231100000135 cytotoxicity Toxicity 0.000 description 1
- 230000009615 deamination Effects 0.000 description 1
- 238000006481 deamination reaction Methods 0.000 description 1
- 238000013461 design Methods 0.000 description 1
- 239000000032 diagnostic agent Substances 0.000 description 1
- 229940039227 diagnostic agent Drugs 0.000 description 1
- 239000002552 dosage form Substances 0.000 description 1
- 230000035622 drinking Effects 0.000 description 1
- 238000009509 drug development Methods 0.000 description 1
- 239000000975 dye Substances 0.000 description 1
- 230000000547 effect on apoptosis Effects 0.000 description 1
- 239000012636 effector Substances 0.000 description 1
- 239000012149 elution buffer Substances 0.000 description 1
- 239000003623 enhancer Substances 0.000 description 1
- 210000003527 eukaryotic cell Anatomy 0.000 description 1
- 238000010195 expression analysis Methods 0.000 description 1
- 239000012530 fluid Substances 0.000 description 1
- 239000007850 fluorescent dye Substances 0.000 description 1
- 238000011010 flushing procedure Methods 0.000 description 1
- 239000012737 fresh medium Substances 0.000 description 1
- 230000004927 fusion Effects 0.000 description 1
- 238000001641 gel filtration chromatography Methods 0.000 description 1
- 235000019322 gelatine Nutrition 0.000 description 1
- 235000011852 gelatine desserts Nutrition 0.000 description 1
- 230000002068 genetic effect Effects 0.000 description 1
- 230000013595 glycosylation Effects 0.000 description 1
- 238000006206 glycosylation reaction Methods 0.000 description 1
- 230000035876 healing Effects 0.000 description 1
- 238000010438 heat treatment Methods 0.000 description 1
- 239000000833 heterodimer Substances 0.000 description 1
- 210000005260 human cell Anatomy 0.000 description 1
- 210000004408 hybridoma Anatomy 0.000 description 1
- 229960002751 imiquimod Drugs 0.000 description 1
- 230000002519 immonomodulatory effect Effects 0.000 description 1
- 230000005746 immune checkpoint blockade Effects 0.000 description 1
- 210000000987 immune system Anatomy 0.000 description 1
- 239000012274 immune-checkpoint protein inhibitor Substances 0.000 description 1
- 230000003053 immunization Effects 0.000 description 1
- 238000002649 immunization Methods 0.000 description 1
- 229940127121 immunoconjugate Drugs 0.000 description 1
- 230000002163 immunogen Effects 0.000 description 1
- 230000016784 immunoglobulin production Effects 0.000 description 1
- 239000003018 immunosuppressive agent Substances 0.000 description 1
- 229940125721 immunosuppressive agent Drugs 0.000 description 1
- 230000001024 immunotherapeutic effect Effects 0.000 description 1
- 238000009169 immunotherapy Methods 0.000 description 1
- 238000001802 infusion Methods 0.000 description 1
- 208000014674 injury Diseases 0.000 description 1
- 102000006495 integrins Human genes 0.000 description 1
- 108010044426 integrins Proteins 0.000 description 1
- 210000000936 intestine Anatomy 0.000 description 1
- 238000011835 investigation Methods 0.000 description 1
- 229960003299 ketamine Drugs 0.000 description 1
- 210000003734 kidney Anatomy 0.000 description 1
- 210000003292 kidney cell Anatomy 0.000 description 1
- 238000011813 knockout mouse model Methods 0.000 description 1
- 238000002350 laparotomy Methods 0.000 description 1
- 230000004807 localization Effects 0.000 description 1
- 238000004020 luminiscence type Methods 0.000 description 1
- 229920002521 macromolecule Polymers 0.000 description 1
- 238000004949 mass spectrometry Methods 0.000 description 1
- 230000007246 mechanism Effects 0.000 description 1
- 201000001441 melanoma Diseases 0.000 description 1
- 230000004060 metabolic process Effects 0.000 description 1
- MYWUZJCMWCOHBA-VIFPVBQESA-N methamphetamine Chemical compound CN[C@@H](C)CC1=CC=CC=C1 MYWUZJCMWCOHBA-VIFPVBQESA-N 0.000 description 1
- 244000005700 microbiome Species 0.000 description 1
- 230000009456 molecular mechanism Effects 0.000 description 1
- 230000019581 neuron apoptotic process Effects 0.000 description 1
- 229920001220 nitrocellulos Polymers 0.000 description 1
- 231100000252 nontoxic Toxicity 0.000 description 1
- 230000003000 nontoxic effect Effects 0.000 description 1
- 230000005937 nuclear translocation Effects 0.000 description 1
- 238000003199 nucleic acid amplification method Methods 0.000 description 1
- 231100000590 oncogenic Toxicity 0.000 description 1
- 230000002246 oncogenic effect Effects 0.000 description 1
- 238000005457 optimization Methods 0.000 description 1
- 210000000056 organ Anatomy 0.000 description 1
- 150000002894 organic compounds Chemical class 0.000 description 1
- 210000001672 ovary Anatomy 0.000 description 1
- 229940055729 papain Drugs 0.000 description 1
- 235000019834 papain Nutrition 0.000 description 1
- 230000008506 pathogenesis Effects 0.000 description 1
- 230000001575 pathological effect Effects 0.000 description 1
- 229940111202 pepsin Drugs 0.000 description 1
- 229940023041 peptide vaccine Drugs 0.000 description 1
- 230000008782 phagocytosis Effects 0.000 description 1
- 230000004962 physiological condition Effects 0.000 description 1
- 239000000902 placebo Substances 0.000 description 1
- 229940068196 placebo Drugs 0.000 description 1
- 210000003281 pleural cavity Anatomy 0.000 description 1
- 229920000642 polymer Polymers 0.000 description 1
- 235000020777 polyunsaturated fatty acids Nutrition 0.000 description 1
- 230000004481 post-translational protein modification Effects 0.000 description 1
- 239000002243 precursor Substances 0.000 description 1
- 238000012545 processing Methods 0.000 description 1
- 230000005522 programmed cell death Effects 0.000 description 1
- 210000001236 prokaryotic cell Anatomy 0.000 description 1
- 230000002035 prolonged effect Effects 0.000 description 1
- 125000006239 protecting group Chemical group 0.000 description 1
- 238000001742 protein purification Methods 0.000 description 1
- 230000002285 radioactive effect Effects 0.000 description 1
- 238000003259 recombinant expression Methods 0.000 description 1
- 210000003289 regulatory T cell Anatomy 0.000 description 1
- 230000001105 regulatory effect Effects 0.000 description 1
- 230000001850 reproductive effect Effects 0.000 description 1
- 230000000717 retained effect Effects 0.000 description 1
- 210000003705 ribosome Anatomy 0.000 description 1
- 238000005096 rolling process Methods 0.000 description 1
- 102200016465 rs104894275 Human genes 0.000 description 1
- 102220321735 rs1372403007 Human genes 0.000 description 1
- 102220227917 rs375497905 Human genes 0.000 description 1
- 102200004925 rs56136737 Human genes 0.000 description 1
- 102220183908 rs9282732 Human genes 0.000 description 1
- 102220322006 rs950054021 Human genes 0.000 description 1
- 238000003118 sandwich ELISA Methods 0.000 description 1
- 238000011450 sequencing therapy Methods 0.000 description 1
- 238000013207 serial dilution Methods 0.000 description 1
- 210000000952 spleen Anatomy 0.000 description 1
- 230000000638 stimulation Effects 0.000 description 1
- 230000002459 sustained effect Effects 0.000 description 1
- 208000024891 symptom Diseases 0.000 description 1
- 230000000699 topical effect Effects 0.000 description 1
- 238000013518 transcription Methods 0.000 description 1
- 230000035897 transcription Effects 0.000 description 1
- 230000002103 transcriptional effect Effects 0.000 description 1
- 238000001890 transfection Methods 0.000 description 1
- 230000009466 transformation Effects 0.000 description 1
- 230000009261 transgenic effect Effects 0.000 description 1
- 210000004881 tumor cell Anatomy 0.000 description 1
- 238000002255 vaccination Methods 0.000 description 1
- 239000003981 vehicle Substances 0.000 description 1
- 230000003442 weekly effect Effects 0.000 description 1
- BPICBUSOMSTKRF-UHFFFAOYSA-N xylazine Chemical compound CC1=CC=CC(C)=C1NC1=NCCCS1 BPICBUSOMSTKRF-UHFFFAOYSA-N 0.000 description 1
- 229960001600 xylazine Drugs 0.000 description 1
- 210000005253 yeast cell Anatomy 0.000 description 1
- UHVMMEOXYDMDKI-JKYCWFKZSA-L zinc;1-(5-cyanopyridin-2-yl)-3-[(1s,2s)-2-(6-fluoro-2-hydroxy-3-propanoylphenyl)cyclopropyl]urea;diacetate Chemical compound [Zn+2].CC([O-])=O.CC([O-])=O.CCC(=O)C1=CC=C(F)C([C@H]2[C@H](C2)NC(=O)NC=2N=CC(=CC=2)C#N)=C1O UHVMMEOXYDMDKI-JKYCWFKZSA-L 0.000 description 1
Abstract
The present invention provides humanized antiCMKLR 1 compounds having an agonist capability on the interaction between Resolvin E1 and CMKLR1, and their uses for treating or preventing a disease, in particular wherein the resolution of inflammation is delayed or disrupted.
Description
ANTI-CHEMOKIN LIKE RECEPTOR 1 HUMANIZED ANTIBODIES AND THEIR
THERAPEUTIC APPLICATIONS
Field of the invention
The invention pertains to the field of immunotherapy. The présent invention provides new humanized anti-chemerin receptor antibodies which hâve a Resolvin E1-like agonist activity on chemokine like receptor-1 (CMKLR1 ). The présent invention also provides uses of such antibody in therapy, in particular for treating autoimmune diseases and chronic inflammatory diseases, infectious diseases, cancers, and any condition wherein the resolution phase of inflammation is disrupted or delayed.
Background of the invention
The critical rôle of inflammatory processes in health and diseases has long been recognized. The detailed molecular mechanisms and biological events that regulate the progression and the resolution of inflammation remain of critical interest. Recent investigations hâve provided strong evidence that the resolution of inflammation is not a passive process, as believed earlier. Resolution of the inflammation is instead a biosynthetically active process, regulated by biochemical mediators and receptors-signaling pathways. Resolution is therefore driven by specialized pro-resolving mediators. Inflammation is a spontaneous mechanism that occurs during an infection, an injury or a traumatism. Inflammation is inévitable and usually salutary, and its response is orchestrated by a délicate balance between positive and négative feedback loops. The inflammation is usually divided in 3 steps: initiation, amplification and resolution.
The resolution process which allows the ending of the inflammatory response is a complex process involving the sequential and chronological engagement of cellular (e.g. granulocytes or macrophages) and Chemical (e.g. cytokines or specialized pro-solving mediators or factors) effectors.
Chemokine-like receptor 1 (CMKLR1), also known as ChemR23, and chemokine receptorlike 2 (CCRL2) are 7-transmembrane receptors identified by their homology to known G-proteincoupled receptors (AJ Kennedy and AP Davenport, 2018). The Chemokine-like Receptor 1 (CMKLR1 ; also named Dez in Murine animais), is an orphan G protein-coupled receptor related to GPR-1 (38% overall amino acid identity), C3a receptor (38%), C5a anaphylatoxin receptor (36%) and formyl Met-Leu-Phe receptors (35%). ChemR23 is more distantly related to the chemokine receptors subfamily (Samson et al., 1998). CMKLR1 is expressed on monocytes, on macrophages, on dendritic cells, and on NK cells, as well as on adipocytes and endothélial cells. Recent studies identified ligands for these receptors and their functions hâve begun to be unveiled. Accordingly, a first plasma protein-derived chemoattractant named chemerin has been identified as a ligand for CMKLR1.
The second ligand of CMKLR1 is the lipid mediator Resolvin E1 (RvE1) that belongs to the Resolvin family. The anti-inflammatory lipid mediator Resolvin E1 inhibits leukocyte infiltration and pro-inflammatory gene expression.
Initially, the interest in the chemerin System (Le. the signaling pathway(s) activated or not by Chemerin receptors by their ligands like Chemerin and Resolvin) was focused on its rôle in inflammation and chemotaxis of immune cells following its discovery in psoriasis disease. Most recently, in connection with its rôle in inflammation, in obesity, metabolic syndrome, its potential rôle in association with cardiovascular functions has been considered, as well as rôle in reproductive biology. Therefore, the chemerin System is of major interest for its rôle in the inflammation process, in particular for its rôle in the resolution of the inflammation. A number of diseases are related to delay or disruption of the resolution process. Most of the specialized pro-resolving factor mediators currently known are derived from polyunsaturated fatty acids, including lipoxins, the resolving family, including E-series resolvins and D-series resolvins, protectins, and maresins. Nonetheless, pro-resolving molécules are difficult to synthesize because of their lipidic nature. Production of pro-resolving molécules in sufficient quantifies, for a clinical trial for example, is a burden, and very few SPM hâve gone through efficient production. Besides that, antibodies specifically targeting G-protein-coupled receptors are difficult to produce. There is therefore a need for molécules having the capability to take part, in particular to initiate or enhance the resolution stage of the inflammatory response like proresolving factors.
Summary of the invention
In a first aspect, the invention relates to a humanized anti-CMKLR1 antibody or antigenbinding fragment thereof or antigen-binding antibody mimetic or modified antibody.
The inventors hâve sought to obtain improved humanized antibodies when compared to wild type anti-CMKLR1 antibody known in the prior art. While it is known that some residues in the variable domain CDR and framework (FR) sequences, including residues in the Vernier zone, canonical residues, residues at the variable heavy and variable light chains interface, etc, are critical in the structure of an antibody and should not be mutated in order to preserve the biochemical and biological activity of an antibody, the inventors hâve surprisingly discovered that some mutations within the heavy chain variable domain and/or the light Chain variable domain sequence of wild type antibody, including some of such critical residues, allow increasing human residue content (up to 99% of humanization) while functional features are associated with these humanized antibodies, which are not shared by wild type anti-CMKLR1 in particular which are improved, and at the same time that production of these humanized antibodies may be improved as compared to less or distinctly humanized anti-CMKLR1 antibodies. These humanized antibodies lead to the provision of compounds exhibiting functional features useful in the treatment of diseases, including diseases wherein inflammation is implicated, which can be produced on a large scale for candidate drug development. The combination of these two features leads to the provision of anti-CMKLR1 antibodies showing improved capabilities as compared to the antibodies of the prior art.
Starting from a not humanized anti-CMKLR1 antibody and selecting human germline sequences, the inventors designed particular humanized heavy chain variable domains and light chain variable domains. The humanized heavy chain variable domain and light chain variable domain derived from non-humanized antibody allow a production of functional antibodies in different cell lines, like but no limited to Chinese Hamster Ovary (CHO) cell line, transformed African Green Monkey Kidney Fibroblast Cells (COS-7) cell line and Human Embryonic Kidney cell line (HEK 293) in conditions that enable recovering significant yield of antibodies that bind their target with an activity that may even be increased with respect to the binding activity of the wild type antibody. Some of the obtained humanized heavy chain variable domain and light chain variable domain were in particular further humanized with respect to a first humanization step carried out on framework régions of the heavy and light chains variable domains, leading to the provision of antibodies suitable for high yield production in different cell lines, with a reduced immunogenicity, and having at least the functional features of their parental antibody. The skilled artisan would not hâve expected that said mutations, particularly at such positions in the CDR domains and in framework régions of the heavy and/or light chain variable domain would lead to the provision of anti-CMKLR1 antibodies with a preserved binding capability in particular preserved affinity, a preserved stability, the préservation of the Resolvin-like agonist capability of these antibodies on CMKLR1, with a lowered immunogenicity index, while the production scale of these antibodies comprising a heavy variable domain and a light variable domain according to the invention would be improved as compared to less or differently humanized antibodies. It was not foreseeable that the introduction of the disclosed mutations, and particularly in the CDR2 of the heavy chain would resuit in improved production, while still preserving binding features and advantageously other functional features of the antiCMKLR1 antibodies of the prior art. Anti-CMKLR1 antibodies exhibiting the recited features (binding capability, in particular affinity, for CMKLR1, in particular for the particular third extraloop of CMKLR1, low immunogenicity, good production scale and Resolvin-like agonist capability for CMKLR1 ) are useful for a potent treatment of several diseases, including diseases wherein inflammation is involved, and more particularly inflammatory diseases.
Further, as will be explained later in the présent application, several very advantageous biological effects hâve been reached, associated in particular to the apoptosis of neutrophils and to the réduction of migration and/or transmigration of neutrophils and/or macrophages notably, leading to strong benefic action in the resolution of inflammation. The new compounds allow thus to combine the production capacity and the biological activity.
Accordingly, in a first aspect of the invention, it is disclosed an antibody or antigen-binding fragment thereof, which binds to Chemokin-like receptor 1 (CMKLR1), in particular human CMKLR1, comprising:
a) an antibody heavy chain variable (VH) domain comprising the three CDRs VHCDR1, VHCDR2 and VHCDR3, wherein:
- VHCDR1 is selected from the group consisting of SEQ ID No.3, SEQ ID No. 4, SEQ ID No. 5, SEQ ID No. 6 and SEQ ID No. 7;
- VHCDR2 is selected from the group consisting of SEQ ID No. 9, SEQ ID No. 10, SEQ ID No. 11, SEQ ID No. 12 and SEQ ID No. 61;
- VHCDR3 is selected from the group consisting of SEQ ID No. 13, SEQ ID No. 14, SEQ ID No. 15 and SEQ ID No. 16;
b) an antibody light chain variable (VL) domain comprising the three CDRs VLCDR1, VLCDR2 and VLCDR3, wherein:
- VLCDR1 is selected from the group consisting of SEQ ID No. 17, SEQ ID No.18,
SEQ ID No. 19, SEQ ID No. 20, SEQ ID No. 21, SEQ ID No. 22 and SEQ ID No. 23;
- VLCDR2 is selected from the group consisting of SEQ ID No. 24, SEQ ID No.25,
SEQ ID No. 26, SEQ ID No. 27, SEQ ID No. 28, SEQ ID No. 29, SEQ ID No.30,
SEQ ID No. 31, SEQ ID No. 32 and SEQ ID No. 33;
- VLCDR3 is selected from the group consisting of SEQ ID No. 34, SEQ ID No. 35 and SEQ ID No. 36.
In a particular embodiment, said antibody or antigen-binding fragment thereof, which binds to Chemokin-like receptor 1 (CMKLR1), in particular human CMKLR1, comprises:
c) an antibody heavy chain variable (VH) domain comprising the three CDRs VHCDR1, VHCDR2 and VHCDR3, wherein:
- VHCDR1 is selected from the group consisting of SEQ ID No.3, SEQ ID No. 4, SEQ ID No. 5, SEQ ID No. 6 and SEQ ID No. 7;
- VHCDR2 is selected from the group consisting of SEQ ID No. 9, SEQ ID No. 10, SEQ ID No. 11 and SEQ 61; or VHCDR2 corresponds to the amino acid sequence of SEQ ID No. 12 or SEQ ID No. 63 with the proviso that VHCDR1 is not SEQ ID No. 3 or SEQ ID No. 4;
- VHCDR3 is selected from the group consisting of SEQ ID No. 13, SEQ ID No. 14, SEQ ID No. 15 and SEQ ID No. 16;
d) an antibody light chain variable (VL) domain comprising the three CDRs VLCDR1, VLCDR2 and VLCDR3, wherein:
- VLCDR1 is selected from the group consisting of SEQ ID No. 17, SEQ ID No. 18, SEQ ID No. 19, SEQ ID No. 20, SEQ ID No. 21, SEQ ID No. 22 and SEQ ID No. 23;
- VLCDR2 is selected from the group consisting of SEQ ID No. 24, SEQ ID No. 25, SEQ ID No. 26, SEQ ID No. 27, SEQ ID No. 28, SEQ ID No. 29, SEQ ID No. 30, SEQ ID No. 31, SEQ ID No. 32 and SEQ ID No. 33;
- VLCDR3 is selected from the group consisting of SEQ ID No. 34, SEQ ID No. 35 and SEQ ID No. 36.
In another particular embodiment, said antibody or antigen-binding fragment thereof, which binds to Chemokin-like receptor 1 (CMKLR1), in particular human CMKLR1, comprises:
e) an antibody heavy chain variable (VH) domain comprising the three CDRs VHCDR1, VHCDR2 and VHCDR3, wherein:
- VHCDR1 is selected from the group consisting of SEQ ID No.3, SEQ ID No. 4, SEQ ID No. 5, SEQ ID No. 6 and SEQ ID No. 7;
- VHCDR2 is selected from the group consisting of SEQ ID No. 9, SEQ ID No. 10, SEQ ID No. 11 and SEQ No. 61, o when VHCDR1 is SEQ ID No. 3 or SEQ ID No. 4 and VHCDR2 corresponds to the amino sequence of SEQ ID NO: 12 said heavy chain variable (VH) domain does not comprise a framework VHFR3 of SEQ ID No. 70, preferably with the proviso that said heavy chain variable (VH) domain comprises a framework FR3 of SEQ ID NO: 69,
- VHCDR3 is selected from the group consisting of SEQ ID No. 13, SEQ ID No. 14, SEQ ID No. 15 and SEQ ID No. 16;
f) an antibody light chain variable (VL) domain comprising the three CDRs VLCDR1, VLCDR2 and VLCDR3, wherein:
- VLCDR1 is selected from the group consisting of SEQ ID No. 17, SEQ ID No. 18,
SEQ ID No. 19, SEQ ID No. 20, SEQ ID No. 21, SEQ ID No. 22 and SEQ ID No. 23;
- VLCDR2 is selected from the group consisting of SEQ ID No. 24, SEQ ID No. 25,
SEQ ID No. 26, SEQ ID No. 27, SEQ ID No. 28, SEQ ID No. 29, SEQ ID No. 30,
SEQ ID No. 31, SEQ ID No. 32 and SEQ ID No. 33;
- VLCDR3 is selected from the group consisting of SEQ ID No. 34, SEQ ID No. 35 and SEQ ID No. 36.
In particular advantageously, the antibody or antigen-binding fragment thereof binds specifically to the third extra-cellular loop (EL3) of CMKLR1, in particular an epitope located within the third extra-cellular loop (EL3) of CMKLR1; more particularly the antibody or antigenbinding fragment thereof binds specifically to a polypeptide comprising amino acid sequence SEQ ID No: 2 or SEQ ID No. 59 or to an epitope located within amino acid sequence SEQ ID No. 60.
An antibody or an antigen-binding fragment thereof according to this embodiment is suitable for production in different cell lines, including but not limited to mammalian cell lines, with a yield of production suitable for purposes of development of a drug candidate, while the spécifie binding capability to the extra cellular third loop of CMKLR1 and its Resolvin E1-like agonist capability on CMKLR1 are retained. The humanized antibodies disclosed herein may therefore be efficiently produced and share the functional capabilities of their parental antibody.
In a particular aspect of the invention, which may be distinguished from the définition of the antibodies of the invention solely by their CDR domains, but which may be combined with such a définition in particular embodiments, it is disclosed an antibody or antigen-binding fragment thereof, which binds to Chemokin-like receptor 1 (CMKLR1), in particular human CMKLR1, suitable for the production in mammalian cells such as COS or CHO or HEK cells, in particular with a yield over 0.1mg/ml, in particular with a yield over 1 mg/ml, more particularly with a yield of at least 10 mg/ml, and again more particularly with a yield over 100 mg/ml wherein:
g) the Variable Heavy (VH) domain comprises the amino acid sequence of the frameworks (FR1, FR2, FR3 and FR4) of a Heavy Chain variable domain wherein each framework harbors a sequence identity respectively with the framework of the same rank in the sequence of SEQ ID No. 41 that is 100 % for FR1, at least 60 % for FR2, at least 78 % for FR3 and at least 80 % for FR4; more particularly 100 % or FR1, at least 80 % for FR2, at least 85 % for FR3 and at least 90 % for FR4;
h) the Variable Light (VL) domain comprises the amino acid sequence of the frameworks (FR1, FR2, FR3 and FR4) of a Light Chain Variable domain wherein each framework harbors a sequence identity respectively with the framework of the same rank in the sequence of SEQ ID No.50 that is at least 60 % for FR1, at least 70 % for FR2, at least 75 % for FR3 and at least 80 % for FR4, and more particularly of 100% for FR1, at least 90 % for FR2, at least 90% for FR3 and 100 % for FR4.
In particular, said humanized anti-CMKLR1 antibody or said antigen binding fragment thereof specifically binds to the third extra-cellular loop (EL3) of CMKLR1, in particular the antibody or antigen-binding fragment thereof binds specifically to a polypeptide comprising amino acid sequence SEQ ID No: 2 or SEQ ID No. 59 or to an epitope located within amino acid sequence SEQ ID No. 60.
The inventors, starting from the anti-CMKLR1 antibody 2G1, synthetized various heavy chain variable domains and light chain variable domains. The humanized heavy chain variable domain of SEQ ID No. 41 and the humanized light chain variable domain of SEQ ID No. 50 were particularly suitable for the production of humanized anti-CMKLR1 antibodies in cell or cell line, including mammalian cell like CHO cells or COS cells or HEK Cells. Having selected a particular human germline sequence for the design of the heavy chain variable domain and light chain variable domain, humanized antibodies with the herein defined identifies in framework régions were also able to be produced in decent amounts in cell or cell line for the purpose of developing an antibody that may give rise to a drug candidate. There is a high interest in the provision of humanized antibodies which are able to be produced in high amount in cell or cell line, in particular in mammalian cell or cell line, for developing therapeutic antibodies. The particular anti-CMKLR1 antibodies provided herein share a highly similar structure with their parental antibody comprising heavy chain variable domain of SEQ ID No. 41 and light Chain variable domain of SEQ ID No. 50, allowing the correct production, conformation and sécrétion of the anti-CMKLR1 antibody, thereby allowing the provision of an antibody which binds to the particular epitope of the Chemerin-like receptor 1 and having a Resolvin E1-like agonist capability on this receptor in sufficient amount for therapeutic purposes.
In a particular embodiment of the invention, it is provided an antibody which is a humanized anti- Chemerin Like Receptor 1 (CMKLR1) antibody or an antigen-binding fragment thereof suitable for the production in mammalian cells such as COS or CHO cells, in particular with a yield over 0.1 mg/ml, more particularly with a yield over 1 mg/ml, more particularticularly with a yield over 10 mg/ml, again more particularly with a yield over 100 mg/ml, wherein :
i) the Variable Heavy (VH) domain comprises the amino acid sequence of the frameworks (FR1, FR2, FR3 and FR4) of a Heavy Chain variable domain wherein each framework harbors a sequence identity respectively with the framework of the same rank in the sequence of SEQ ID No. 41 that is at least 90 % for FR1, at least 70 % for FR2, at least 80 % for FR3 and at least 80 % for FR4;
j) the Variable Light (VL) domain comprises the amino acid sequence of the frameworks (FR1, FR2, FR3 and FR4) of a Light Chain Variable domain wherein each framework harbors a sequence identity respectively with the framework of the same rank in the sequence of SEQ ID No.50 that is at least 60 % for FR1, at least 80 % for FR2, at least 75 % for FR3 and at least 70 % for FR4.
In particular, said humanized anti-CMKLR1 antibody or said antigen binding fragment thereof specifically binds to the third extra-cellular loop (EL3) of CMKLR1; in particular the antibody or antigen-binding fragment thereof binds specifically to a polypeptide comprising amino acid sequence SEQ ID No: 2 or SEQ ID No. 59 or located within amino acid sequence SEQ ID No 60.
In a particular embodiment of the humanized antibody or the antigen-binding fragment thereof defined above, such humanized antibody or the antigen-binding fragment thereof comprises , a) an antibody heavy chain variable (VH) domain comprising the three CDRs VHCDR1, VHCDR2 and VHCDR3, wherein:
- VHCDR1 is selected from the group consisting of SEQ ID No.3, SEQ ID No. 4, SEQ ID No: 5, SEQ ID No. 6 and SEQ ID No. 7; and
- VHCDR2 is selected from the group consisting of SEQ ID No. 9, SEQ ID No. 10, SEQ ID No. 11, SEQ ID No. 12 and SEQ 61; and
- VHCDR3 is selected from the group consisting of SEQ ID No. 13, SEQ ID No. 14, SEQ ID No. 15 and SEQ ID No. 16; and
b) an antibody light chain variable (VL) domain comprising the three CDRs VLCDR1, VLCDR2 and VLCDR3, wherein:
- VLCDR1 is selected from the group consisting of SEQ ID No. 17, SEQ ID No. 18, SEQ ID No. 19, SEQ ID No. 20, SEQ ID No. 21, SEQ ID No. 22 and SEQ ID No. 23; and In a particular embodiment, of the humanized antibody or the antigen-binding fragment thereof defined above, such humanized antibody or the antigen-binding fragment thereof comprises:
a) an antibody heavy chain variable (VH) domain comprising the three CDRs VHCDR1, VHCDR2 and VHCDR3, wherein:
- VHCDR1 is selected from the group consisting of SEQ ID No.3, SEQ ID No. 4, SEQ ID No. 5, SEQ ID No. 6 and SEQ ID No. 7; and
- VHCDR2 is selected from the group consisting of SEQ ID No. 9, SEQ ID No. 10, SEQ ID No. 11and SEQ 61; or VHCDR2 comprises or consists of the amino acid » sequence of SEQ ID No. 12 or SEQ ID No. 63 with the proviso that VHCDR1 is not SEQ ID No.3 or SEQ ID No. 4; and
- VHCDR3 is selected from the group consisting of SEQ ID No. 13, SEQ ID No. 14, SEQ ID No. 15 and SEQ ID No. 16; and
b) an antibody light chain variable (VL) domain comprising the three CDRs VLCDR1, VLCDR2 and VLCDR3, wherein:
- VLCDR1 is selected from the group consisting of SEQ ID No. 17, SEQ ID No. 18, SEQ ID No. 19, SEQ ID No. 20, SEQ ID No. 21, SEQ ID No. 22 and SEQ ID No. 23; and
- VLCDR2 is selected from the group consisting of SEQ ID No. 24, SEQ ID No. 25, SEQ ID No. 26, SEQ ID No. 27, SEQ ID No. 28, SEQ ID No. 29, SEQ ID No. 30, SEQ ID No. 31, SEQ ID No. 32 and SEQ ID No. 33; and
- VLCDR3 is selected from the group consisting of SEQ ID No. 34, SEQ ID No. 35 and SEQ ID No. 36.
In another particular embodiment of the humanized antibody or the antigen-binding fragment thereof defined above, such humanized antibody or the antigen-binding fragment thereof comprises:
a) an antibody heavy chain variable (VH) domain comprising the three CDRs VHCDR1, VHCDR2 and VHCDR3, wherein:
- VHCDR1 is selected from the group consisting of SEQ ID No.3, SEQ ID No. 4, SEQ ID No. 5, SEQ ID No. 6 and SEQ ID No. 7; and
- VHCDR2 is selected from the group consisting of SEQ ID No. 9, SEQ ID No. 10, SEQ IDNo. 11 and SEQ 61;
when VHCDR1 is SEQ ID No. 3 or SEQ ID No. 4 and VHCDR2 comprises or consists of the amino acid sequence of SEQ ID No. 12 said heavy chain variable (VH) domain does not comprise a framework VHFR3 of SEQ ID No. 70, preferably with the proviso that said heavy chain variable (VH) domain comprises VHFR3 of SEQ ID No. 69 ; and
- VHCDR3 is selected from the group consisting of SEQ ID No. 13, SEQ ID No. 14, SEQ ID No. 15 and SEQ ID No. 16; and
b) an antibody light chain variable (VL) domain comprising the three CDRs VLCDR1, VLCDR2 and VLCDR3, wherein:
- VLCDR1 is selected from the group consisting of SEQ ID No. 17, SEQ ID No. 18, SEQ ID No. 19, SEQ ID No. 20, SEQ ID No. 21, SEQ ID No. 22 and SEQ ID No. 23; and
- VLCDR2 is selected from the group consisting of SEQ ID No. 24, SEQ ID No. 25, SEQ ID No. 26, SEQ ID No. 27, SEQ ID No. 28, SEQ ID No. 29, SEQ ID No. 30, SEQ ID No. 31, SEQ ID No. 32 and SEQ ID No. 33; and
- VLCDR3 is selected from the group consisting of SEQ ID No. 34, SEQ ID No. 35 and SEQ ID No. 36.
Such antibody présents the same advantageous features as the antibodies defined according to the fîrst aspect and the second aspect of the invention; i.e. high yield production, spécifie binding to an epitope located within the third extra loop of the chemerin4ike Receptor 1, a Resolvin E1 -like agonist capability.
The disclosed antibodies are suitable for being used in the treatment of a condition wherein the resolution of the inflammation is delayed or disrupted. Ail antibodies described herein are suitable for inducing the resolution of the inflammation, and/or enhancing resolution of the inflammation, and/or initiating resolution of the inflammation.
In the following disclosure, a humanized anti-CMKLR1 compound is considered as being either a humanized anti-CMKLR1 antibody or antigen-binding fragment thereof or antigenbinding antibody mimetic or modified antibody. In a particular embodiment of the invention, said compound is defined by the sequences of its CDR. In a more particular embodiment of the invention, the anti-CMKLR1 compound is an antibody defined by the sequences of its CDRs and its framework régions (FR). An anti-CMKLR1 compound is a compound which binds specifically to the Chemokin-like receptor 1 (CMKLR1). In the following disclosure, the terms Chemokin-like receptor 1, CMKLR1 and ChemR23 are used interchangeably, and ail designate the receptor encoded by gene CMKLR1 in human or cmklrl in non-human animais. In a particular embodiment of the invention, the anti-CMKLR1 compound binds specifically to human CMKLR1 or, in other words, the invention relates to an anti-human CMKLR1 compound. As used herein, the term “CMKLR1” refers to a Chemokin-Like Receptor 1 protein (also designated as chemR23), a member of the G-protein coupled receptor family from a mammal species, preferably a human CMKLR1. A référencé sequence of the human CMKLR1 protein, used in the examples of the présent application, corresponds to the sequence associated to the Uniprot Accession number Q99788 (SEQ ID No: 1).
In a particular aspect, the invention relates to an anti-CMKLR1 antibody or antigen-binding fragment thereof or antigen-binding antibody mimetic or modified antibody defined by at least one functional feature. In a preferred embodiment, said anti-CMKLR1 compound is defined by its capability to inhibit sécrétion of pro-inflammatory cytokines, in particular IL12, and/or its capability to enhance sécrétion of anti-inflammatory cytokines, in particular IL10. In a more particular embodiment, the anti-CMKLR1 compound inhibits or enhances cytokine sécrétion by macrophages, in particular by pro-inflammatory macrophages and/or by pro-resolution of the inflammation macrophages. In a particular embodiment, the anti-CMKLR1 compound of the invention enhances the polarization of macrophages into anti-inflammatory macrophages, in particular pro-resolution macrophages. In a particular embodiment, the anti-CMKLR1 compound of the invention enhances the apoptosis of neutrophils as compared to a control antibody.
In a particular aspect, the invention relates to an anti-CMKLR1 antibody or antigen-binding fragment thereof or antigen-binding antibody mimetic that has agonist properties towards the Resolvin E1 (RvE1)/CMKLR1 interaction, thereby mimicking at least one of the effects induced by the binding of RvE1 to CMKLR1 on CMKLR1-positive cells. “Agonist properties towards RvE1-CMKLR1 interaction” means that the antibody or antigen-binding fragment thereof or antigen-binding antibody mimetic or modified antibody of the invention, which targets the CMKLR1, has the effect of mimicking at least one of the effects provided by the binding of RvE1 to CMKLR1, thereby activating the receptor signaling pathway normally activated by RvE1, especially the binding of human RvE1 to human CMKLR1, in particular on dendritic cells, neutrophils, monocytes and macrophages. As a resuit of binding and activation of the receptor to produce a biological response, the compounds of the invention may lead to the activation of the G protein signaling pathway, in particular Gai signaling pathway and/or Ga0, without activating the β-arrestin pathway. In particular, the compound of the invention may lead to the inhibition of the β-arrestin pathway. In particular, the binding of a compound according to the invention induces the activation of Akt and/or Erk protein(s) in vitro and/or in vivo. In a particular embodiment, the compound may be considered as an anti-CMKLR1 agonist having a Resolvin E1-like capability when the G-protein signaling pathway is activated in CMKLRI-potitive cells stimulated with the compound of the invention, and in a more particular embodiment, also when the Β-arrestin pathway is not activated, and in particular conditions, when the B-arrestin pathway is inhibited. In other words, a Resolvin-E1 like agonist antibody may be defined as an antibody able to bind CMKLR1, and thereby able to induce the phosphorylation of the Akt and/or Erk protein(s), as compared to a control antibody. A control antibody may be an antibody which does not specifically bind CMKLR1. Phosphorylation of a protein may be determined according to methods well known by the skilled artisan, for example by the method disclosed in the examples of the présent description. In a particular embodiment, the compound of the invention enhances activation of the G protein pathway induced by CMKLR1. In another embodiment, the compound of the invention does not induce the activation of the β-arrestin pathway induced by CMKLR1. In another embodiment, the compound of the invention inhibits the β-arrestin pathway induced by CMKLR1. In another embodiment, since a compound of the invention induces at least one agonist effect of the binding of RvE1 to CMKLR1, and since RvE1 is a pro-resolution factor or pro-resolution mediator, a compound of the invention is a proresolution factor or a pro-resolution mediator; e.g. a pro-resolution factor may be defined as a compound which inhibits the β-arrestin pathway induced by CMKLR1 and/or enhances activation of the G protein pathway induced by CMKLR1 in CMKLR1-positive cells, as compared to a control compound, which is known for not specifically interacting with CMKLR1. The activation/inhibition of these pathways may be assessed according to the methods disclosed in the working examples of the invention. In a particular embodiment, the effect of the agonist compound is assessed in human cells.
In a particular embodiment, a compound of the invention does not interfère with the binding of Chemerin to CMKLR1. Chemerin is one of the natural ligand of CMKLR1. In other words, a compound according to the invention is not an agonist and/or not an antagonist of the interaction between Chemerin and CMKLR1. The absence of such an agonist and/or antagonist capability may be assessed according to the examples of the invention, wherein a compétition assay to measure Chemerin-dependent Beta-arrestin recruitment by CMKLR1 receptor in presence of anti-CMKLR1 antibody of the invention is disclosed. In a preferred embodiment, the anti-CMKLR1 compound of the invention does not compete with Chemerin for the binding to CMKLR1. The absence of compétition between an anti-CMKLR1 compound of the invention and chemerin may be determined when, in presence of the CMKLR1 compound of the invention, the binding of Chemerin to CMKLR1 is at least 50%, more preferably at least 80%, still more preferably at least 90% and most preferably similar, to the binding of Chemerin to CMKLR1, under the same experimental conditions but without the presence of the antiCMKLR1 of the invention. Alternatively, the absence of compétition between an anti-CMKLR1 compound of the invention and Chemerin may be determined according to the method illustrated in example 9.
In a particular embodiment, the anti-CMKLR1 compound has the capability in vitro and/or in vivo to activate at least one of the Akt signaling pathway proteins (also known as PI3K-Akt Pathway) and/or Erk signaling pathway proteins, preferably Akt protein and/or Erk protein, preferably both the Akt and the Erk proteins. Activation of a pathway may be assessed according to methods known in the art, and in particular with methods disclosed in the examples of the présent invention.
Detailed description of the invention
The présent invention relates to an agonist of CMKLR1 having a Resolvin E1 -like capability for use in the therapeutic treatment of an inflammatory condition in a patient, in particular an inflammatory condition wherein the resolution phase of the inflammation is delayed or disrupted, in particular in a chronic inflammation, in particular said agonist being selected from the group consisting of an antibody or antigen-binding fragment thereof, a peptide, a polypeptide and a protein.
In the following description, without any contrary mention, agonist of CMKLR1 having a Resolvin E1-like capability may be identified as the or a “agonist”; both terms include an antibody or antigen-bind fragment thereof (also reference anti-CMKLR1 antibody), a protein, a peptide or a polypeptide; the term compound or anti-CMKLR1 compound may also be used in the following description as a synonym of “agonist” (of the invention), thereby including an antibody or antigen-bind fragment thereof (also referred to as anti-CMKLR1 antibody), a protein, a peptide or a polypeptide. Among the effects provided by the use of such an agonist, the following particular effects hâve been demonstrated:
- an agonist of CMKLR1 having a Resolvin E1-like capability induces the apoptosis of polymorphonuclear neutrophils (also simply referenced neutrophils, PMN or PMNs herein), and/or the decrease or the inhibition of the migration capability of these cells, in particular through the inhibition of their capacity of transmigration through endothélium towards the site of inflammation as described later in the application
- an agonist of CMKLR1 having a Resolvin E1 -like capability induces the internalization of different receptors expressed on the cell surface on various myeloid cells, notably macrophages and/or dendritic cells, thereby enhancing the processes which induce or sustain the resolution of the inflammation as described later in the application;
- in particular an agonist of CMKLR1 having a Resolvin E1-like capability induces the internalization of different receptors CMKLR1, and CXCR4 and/or CCR7 expressed on the cell surface of macrophages and/or dendritic cells, such internalization leading to the much lower targeting and récognition of the CXCR4, CCR7 receptors by cytokines known to induce the migration of the cells in direction to the site of inflammation, and as a conséquence leading to the decrease or inhibition of the migration of macrophages and/or dendritic cells from the site of inflammation to secondary lymphoid organs and/or towards the site of inflammation;
- An agonist of CMKLR1 having a Resolvin E1-like capability decreases or inhibits the capability of neutrophils and macrophages and/or dendritic cells to migrate; in particular, it decreases or inhibits the ability of neutrophils to transmigrate through the site of inflammation by lowering the rolling capability of these cells due to the internalization and/or the decrease of cell surface expression of CD62L, reducing their ability to transmigrate through the endothélium;
- In a particular aspect of the invention, the inventors demonstrated that agonist of CMKLR1 having a Resolvin E1-like capability comprising a domain suitable for interaction with a Fc receptor, like IgG constant domain, in particular lgG1 constant domain, are particularly efficient. The Fc Receptors of macrophages or neutrophils recognize particularly very efficiently the Fc fragment of the anti-CMKLR1 IgG-constant domain, or lgG1 constant domain, leading or contributing to the apoptosis of the neutrophils recognized by the anti-CMKLR1 lgG1-antibodies
- The inventors herein demonstrate that myeloid cells which are involved in the inflammation process (Le. which sustain inflammation) and which express CMKLR1, and CXCR4 and/or CCR7, are particularly suitable targets for an agonist of CMKLR1 having a Resolvin E1-like capability, for the treatment of a pathological inflammation process.
The invention relates especially to an agonist of anti-Chemerin Like Receptor 1 (CMKLR1) having a Resolvin E1-like capability, for use in the treatment of a patient suffering from an inflammatory condition, in particular an inflammatory condition wherein the resolution of inflammation is delayed or disrupted, wherein the agonist of CMKLR1 having a Resolvin E1 -like capability is selected from the group consisting of an antibody or antigen-binding fragment thereof, a peptide, a polypeptide and a protein, and wherein the agonist :
- induces or activâtes the apoptosis of neutrophils at the site of inflammation, and/or
- inhibits or decreases the transmigration capability of neutrophils through endothélium towards the site of inflammation, and/or
- inhibits the migration of macrophages and/or of dendritic cells from the site of inflammation to secondary lymphoid organs and/or towards the site of inflammation.
- The invention relates to the use of an agonist of CMKLR1 having a Resolvin E1-like capability, like an antibody, in particular a humanized antibody, or antigen-binding fragment thereof, to induce or enhance or activate the apoptosis of neutrophils, in the treatment of an inflammatory condition, in particular an inflammatory condition wherein the resolution of inflammation is delayed or disrupted.
In particular embodiment, the invention relates to a humanized anti-CMKLR1 antibody or antigen-binding fragment thereof or antigen-binding antibody mimetic or modified antibody.
As used herein, the term “antibody” comprises polyclonal antibodies, monoclonal antibodies or recombinant antibodies. As used herein, a monoclonal antibody is intended to refer to a préparation of antibody molécules to obtain antibodies which share a common heavy chain and common light chain amino acid sequence, in contrast with polyclonal antibody préparations which contain a mixture of antibodies of different amino acid sequence. Monoclonal antibodies can be generated by several known technologies like phage, bacteria, yeast or ribosomal display, as well as by classical methods exemplified by hybridoma-derived antibodies. They may also be synthetized using the disclosed amino acid sequences as référencé. Thus, the term monoclonal is used to refer to ail antibodies derived from one nucleic acid clone.
As used herein, the term “antibody” further comprises antibodies which hâve been modified as compared to a wild type antibody; and encompass chimeric antibodies, humanized antibodies, modified antibodies, and antigen-binding antibody mimetics. A particular wild type antibody of référencé in the context of the invention is antibody 2G1.
The antibodies of the présent invention include recombinant antibodies. As used herein, the term recombinant antibody refers to antibodies which are produced, expressed, generated or isolated by recombinant means, such as antibodies which are expressed using a recombinant expression vector transfected into a host cell; antibodies isolated from a recombinant combinatorial antibody library; antibodies isolated from an animal (e.g. a mouse) which is transgenic due to human immunoglobulin genes; or antibodies which are produced, expressed, generated or isolated in any other way in which particular immunoglobulin gene sequences (such as human immunoglobulin gene sequences) are assembled with other DNA sequences. Recombinant antibodies include, for example, chimeric and humanized antibodies.
As used herein, a “chimeric antibody” refers to an antibody in which the sequence of the variable domain derived from the germline of a mammalian species, such as a mouse, hâve been grafted onto the sequence of the constant domain derived from the germline of another mammalian species, such as a human.
As used herein, a “humanized antibody” refers in a first embodiment to an antibody in which CDR sequences derived from the germline of another mammalian species, such as a mouse, hâve been grafted onto human or especially humanized framework sequences. In a further embodiment, a “humanized antibody” refers to an antibody wherein at least one CDR and ail or part of framework sequences hâve been humanized.
As used herein, an “antigen-binding fragment of an antibody” means a part of an antibody, i.e. a molécule corresponding to a portion of the structure of the antibody of the invention, that exhibits antigen-binding capability for CMKLR1, possibly in its native form; such fragment especially exhibits the same or substantially the same antigen-binding specificity for said antigen compared to the antigen-binding specificity of the corresponding four-chain antibody. Advantageously, the antigen-binding fragments hâve a similar binding affinity as the corresponding 4-chain antibodies. However, antigen-binding fragment that hâve a reduced antigen-binding affinity with respect to corresponding 4-chain antibodies are also encompassed within the invention. The antigen-binding capability can be determined by measuring the affinity between the antibody and the target fragment. These antigen-binding fragments may also be designated as “functional fragments” of antibodies.
Antigen-binding fragments of antibodies are fragments which comprise their hypervariable domains designated CDRs (Complementary Determining Régions) or part(s) thereof encompassing the récognition site for the antigen, i.e. the extracellular domain of CMKLR1, in particular the third loop of the extracellular domain of CMKLR1 (designated EL3), thereby defining antigen récognition specificity. EL3 is localized between amino acid residue 283 and amino acid residue 300 of SEQ ID No: 1. The amino acid sequence of the EL3 domain is the amino acid sequence of SEQ ID No: 2. EL3 is also comprised within the polypeptide of SEQ ID No: 52.Each Light and Heavy chain variable domains (respectively VL and VH) of a four-chain immunoglobulin has three CDRs designated VLCDR1, VLCDR2 and VLCDR3 for the light Chain variable domain; and VHCDR1, VHCDR2, VHCDR3 for the heavy chain variable domain. Each Light chain and Heavy chain variable domains of a four-chain immunoglobulin has four framework régions (FR), designated LFR1, LFR2, LFR3 and LFR4 for the light chain variable domain; and HFR1, HFR2, HFR3 and HFR4 for the heavy chain variable domain. The nomenclature System used for defining the CDR domains and the framework domains is the kabat System.
The skilled person is able to détermine the location of the various regions/domains of antibodies by référencé to the standard définitions in this respect set forth, including a référencé 10 numbering System, a référencé to the numbering System of KABAT or by application of the IMGT “collier de perle” algorithm. In this respect, for the définition of the sequences of the invention, it is noted that the délimitation of the regions/domains may vary from one référencé System to another. Accordingly, the regions/domains as defined in the présent invention encompass sequences showing variations in length or localization of the concerned sequences 15 within the full-length sequence of the variable domains of the antibodies, of approximately +/10%.
Based on the structure of four-chain immunoglobulins, antigen-binding fragments can thus be defined by comparison with sequences of antibodies in the available databases and prior art, and especially by comparison of the location of the functional domains in these sequences, 20 noting that the positions of the framework and constant domains are well defined for various classes of antibodies, especially for IgGs, in particular for mammalian IgGs. Such comparison also involves data relating to 3-dimensional structures of antibodies.
For illustration purpose of spécifie embodiments of the invention, antigen binding fragments of an antibody that contain the variable domains comprising the CDRs of said antibody 25 encompass Fv, dsFv, scFv, Fab, Fab', F(ab')2. Fv fragments consist of the VL and VH domains of an antibody associated together by hydrophobie interactions; in dsFv fragments, the VH:VL heterodimer is stabilized by a disulphide bond; in scFv fragments, the VL and VH domains are connected to one another via a flexible peptide linker thus forming a single-chain protein. Fab fragments are monomeric fragments obtainable by papain digestion of an antibody; they 30 comprise the entire L chain, and a VH-CH1 fragment of the H chain, bound together through a disulfide bond. The F(ab')2 fragment can be produced by pepsin digestion of an antibody below the hinge disulfide; it comprises two Fab’ fragments, and additionally a portion of the hinge région of the immunoglobulin molécule. The Fab' fragments are obtainable from F(ab')2 fragments by cutting a disulfide bond in the hinge région. F(ab')2 fragments are divalent, i.e. 35 they comprise two antigen binding sites, like the native immunoglobulin molécule; on the other hand, Fv (a VHVL dimmer constituting the variable part of Fab), dsFv, scFv, Fab, and Fab' fragments are monovalent, i.e. they comprise a single antigen-binding site. These basic antigen-binding fragments of the invention can be combined together to obtain multivalent antigen-binding fragments, such as diabodies, tribodies or tetrabodies. These multivalent antigen-binding fragments are also part of the présent invention.
As used herein, the term modified antibody includes bispecific antibodies and refers to antibodies that recognize two different antigens by virtue of possessing at least one région (e.g. derived from a variable région of a first antibody) that is spécifie for a first antigen, and at least a second région (e.g. derived from a variable région of a second antibody) that is spécifie for a second antigen. A bispecific antibody specifically binds to two target antigens and is thus one type of multispecific antibody. Multispecific antibodies, which recognize two or more different antigens, can be produced by recombinant DNA methods or include, but are not limited to, antibodies produced chemically by any convenient method. Bispecific antibodies include ail antibodies or conjugales of antibodies, or polymeric forms of antibodies which are capable of recognizing two different antigens. Bispecific antibodies include antibodies that hâve been reduced and reformed so as to retain their bivalent characteristics and to antibodies that hâve been chemically coupled so that they can hâve several antigen récognition sites for each antigen such as BiME (Bispecific Macrophage Enhancing antibodies), BiTE (bispecific T cell engager), DART (Dual affinity retargeting); DNL (dock-and-lock), DVD-lg (dual variable domain immunoglobulins), HAS (human sérum albumin), kih (knobs into holes).
Antigen-binding antibody mimetics are organic compounds that specifically bind antigens, but that are not structurally related to antibodies. They are usually artificial peptides or small proteins with a molar mass of about 3 to 20 kDa. Nucleic acids and small molécules are sometimes considered antibody mimetics as well, but not artificial antibodies, antibody fragments and fusion proteins composed from these. Common advantages over antibodies are better solubility, tissue pénétration, stability towards heat and enzymes, and comparatively low production costs. Antibody mimetics are being developed as therapeutic and diagnostic agents. Antigen-binding antibody mimetics may also be selected among the group comprising affibodies, affilins, affimers, affitins, DARPins, and Monobodies.
An antigen-binding antibody mimetic is more preferentially selected from the groups comprising affitins and anticalins. Affitins are artificial proteins with the ability to selectively bind antigens. They are structurally derived from the DNA binding protein Sac7d, found in Sulfolobus acidocaldarius, a microorganism belonging to the archaeal domain. By randomizing the amino acids on the binding surface of Sac7d, e.g. by generating variants corresponding to random substitutions of 11 residues of the binding interface of Sac7d, an affitin library may be generated and subjecting the resulting protein library to rounds of ribosome display, the affinity can be directed towards various targets, such as peptides, proteins, viruses and bacteria. Affitins are antibody mimetics and are being developed as tools in biotechnology. They hâve also been used as spécifie inhibitors for various enzymes (Krehenbrink et al., J. mol. Biol., 383:5, 2008).
The skilled person may readily develop affitins with the required binding properties using methods know in the art, in particular as disclosed in patent application W02008068637 and the above-cited publication, in particular the génération of phage display and/or ribosome display libraries and their screening using an antigen as disclosed herein. Anticalins are artificial proteins that are able to bind to antigens, either to proteins or to small molécules. They are antibody mimetics derived from human lipocalins which are a family of naturally binding proteins. Anticalins are about eight times smaller with a size of about 180 amino acids and a mass of about 20 kDa (Skerra, Febs J., 275:11, 2008). Anticalin phage display libraries hâve been generated which allow for the screening and sélection, in particular of anticalins with spécifie binding properties. The skilled person may readily develop anticalins with the required binding properties using methods know in the art, in particular as disclosed in EP patent EP1270725 B1, US patent US8536307 B2, Schlehuber and Skerra, Biophys. Chem., 96:2-3, 2002 and the above-cited publication, in particular the génération of phage display and/or ribosome display libraries and their screening using an antigen as disclosed herein. Anticalins and affitins may both be produced in a number of expression System comprising bacterial expression Systems. Thus, the invention includes the use of affitins, anticalins and other similar antibody mimetics with the features of the antibodies described herein, in particular with regard to their binding capability to CMKLR1, to their agonist capability towards the binding between RvE1 and CMKLR1, their capability to induce or inhibit sécrétion of particular cytokines as described herein, to their use in the treatment or the prévention of a disease as described herein, ail of which are contemplated as mimetics according to the invention.
As used herein, a “modified antibody” refers to antibodies the amino sequence of which has been modified by mutation of at least one amino acid residue. Accordingly, “modified antibody” encompasses chimeric antibodies or humanized antibodies as defined herein, “modified antibody” may also correspond to a molécule comprising an antibody or an antigen-binding fragment thereof, wherein said monoclonal antibody or functional fragment thereof is associated with a functionally different molécule. A modified antibody of the invention may be either a fusion chimeric protein or a conjugale resulting from any suitable form of attachment including covalent attachment, grafting, Chemical bonding with a Chemical or biological group or with a molécule, such as a PEG polymer or another protective group or molécule suitable for protection against proteases cleavage in vivo, for improvement of stability and/or half-life of the antibody or functional fragment.
“Humanized” forms of non-human (e.g., murine) antibodies are chimeric immunoglobulins, immunoglobulin chains or fragments thereof (such as Fv, Fab, Fab', F(ab')2 or other targetbinding subsequences of antibodies) which contain minimal sequence derived from non-human immunoglobulin. In general, the humanized antibody will comprise substantially ail of at least one, and typically two, variable domains, in which ail the CDR régions correspond to those of a non-human immunoglobulin and/or humanized version of those; and ail or substantially ail of the
FR régions are those of a human immunoglobulin template sequence or harbors substitution of non-human residues (such as rodent residues) for amino acid residues présent in the human immunoglobulin template sequence at the corresponding location. The humanized antibody may also comprise at least a portion of an immunoglobulin constant région (Fc), typically that of a human immunoglobulin template chosen. In a particular embodiment, the invention relates to an antibody comprising a heavy chain variable région as disclosed herein and a light chain variable région as disclosed herein, the heavy chain variable région and/or the light chain variable région further comprising a constant région, in particular a Fc région.
The terms “Specifically binding” and “specifically bind to” refer to the ability of an antibody, antigen-binding fragment thereof, antigen-binding antibody mimetic or a modified antibody according to the invention to bind to CMKLR1 with an affinity of at least 1 X 106 M, 1 X 10’7 M, 1 X W8 M, 1 X 10’9 M, 1 X ΊΟ'10 M, 1 X 10’11 M, 1 X 10’12 M, or more, and/or to bind to CMKLR1 with an affinity which is at least two-fold greater to its affinity for a non-specific target (e.g. another protein than CMKLR1). The affinity may be assessed according to various methods well known from those skilled in the art. These methods include but are not limited to biosensors such as Biacore analysis, Blitz analysis and Scatchard plot.
The term therapeutically effective amount is used to refer to an amount of any given compound as defined herein sufficient for at least the improvement of the clinical or physiological condition of a treated patient. The therapeutically effective amount of the antibody, antigen-binding fragment thereof, antigen-binding antibody mimetic or modified antibody according to the invention to be administered is govemed by considérations such as the disorder being treated, the particular mammal being treated, the clinical condition of the individual patient, the cause of the disorder, the site of delivery of the agent, the method of administration, the scheduling of administration, and other factors known to medical practitioners.
Ail the embodiments disclosed herein for antibodies or antigen-binding fragments thereof are transposed mutatis mutandis to macromolecules of the invention, in particular to antigenbinding antibody mimetics and to modified antibodies.
[2] In a particular embodiment of the invention, the CMKLR1 is a human CMKLR1, which corresponds to NCBI Protein accession number Q99788.2.
A heavy chain variable domain and a light chain variable domain both comprise 3 CDRs (CDR1, CDR2 and CDR3 from 5’ end to 3’ end respectively) and 4 framework régions (FR1, FR2, FR3 and FR4 from 5’ end to 3’ end respectively). Humanization of the murine antibody may consist of humanizing at least one framework région within the light chain variable région and/or within the heavy chain variable région or both. In a particular embodiment, several framework régions may be humanized, in particular within the heavy chain variable région and within the light chain variable région. The wild type CDRs may be conserved, but the CDRs may also be replaced by the CDRs described herein. Hence, the anti-CMKLR1 compound according to the invention may comprise at least 1, or at least 2, or at least 3 or at least 4, or at least 5, or 6 wild type CDRs when the framework régions are humanized. In other words, the antiCMKLR1 compound is a humanized version of the parental chimeric antibody 2G1 (which comprises the heavy chain variable domain of SEQ ID No. 37 and the light chain variable domain of SEQ ID No. 49), wherein at least 1 framework région is humanized, in particular wherein at least 1 framework région and at least 1 CDR are humanized. In a particular embodiment of the invention, the variable régions of the antibody may be associated with antibody constant régions, like IGg1, lgG2, lgG3 or lgG4 constant régions, especially lgG1 constant région. These constant régions may be further mutated or modified, by methods known in the art, for modifying their binding capability towards Fc receptor. In a particular embodiment, the antibody or antigen-binding fragment thereof according to the invention is a humanized monoclonal antibody, in particular wherein the antibody light chain constant domain is derived from a human kappa light chain constant domain, in particular wherein the light chain constant domain comprises or consists of the sequence of SEQ ID No: 79, and wherein the antibody heavy chain constant domain is derived from a human lgG1, lgG2, lgG3, or lgG4 heavy chain constant domain, especially lgG1 heavy chain constant domain in particular wherein the antibody heavy chain constant domain comprises or consists of the amino acid sequence of SEQ ID 80, SEQ ID No. 81, SEQ ID No. 82, SEQ ID No. 83 or SEQ ID No. 84, in particular from a human lgG1 heavy chain constant domain, in particular wherein the antibody heavy chain constant domain comprises or consists of the amino acid sequence of SEQ ID No:80 or SEQ ID No. 83.
The binding to the polypeptide comprising or consisting of amino acid residues of sequence SEQ ID No: 2 and/or SEQ Id No: 59 and/or located within amino acid sequence SEQ ID No 60 and/or for the binding to the third extra-loop of CMKLR1 may be assessed by the examples disclosed in the examples of the invention by binding affinity analysis by ELISA assays. To détermine if a test antibody can compete for binding to the same antigen or to the third loop or to the same epitope bound by the 2G1 antibody (or an antigen-binding fragment comprising the heavy variable domain corresponding to SEQ ID No: 37 and the light chain domain corresponding to SEQ ID No: 49), a cross-blocking assay (e.g. a compétitive ELISA assay) can be performed. In an exemplary compétitive ELISA assay, a polypeptide comprising or consisting of the epitope or the third loop may be coated on the wells of a microtiter plate and preincubated with or without candidate competing antibody and then a biotin-labeled 2G1 antibody of the invention is added. The amount of labeled anti-2G1 antibody bound to the polypeptide comprising or consisting of the polypeptide of SEQ ID No: 2 and/or SEQ Id No: 59 and/or located within amino acid sequence SEQ ID No 60 and/or the third loop of CMKLR1 in the wells is measured using avidin-peroxidase conjugale and appropriate substrate. The antibody can be labeled with a radioactive or fluorescent label or some other détectable and measurable label. The amount of labeled anti-2G1 antibody that bound to the polypeptide of SEQ ID No: 2 and/or
SEQ Id No: 59 and/or located within amino acid sequence SEQ ID No 60 and/or to the third loop will hâve an indirect corrélation to the ability of the candidate competing antibody (test antibody) to compete for binding to the same epitope or to the same loop, i.e., the greater the affinity of the test antibody for the same epitope, the less labeled 2G1 antibody will be bound to 5 the antigen-coated wells. A candidate competing antibody is considered an antibody that competes for binding to the same polypeptide or third loop as 2G1 antibody of the invention when the candidate antibody can block binding of the 2G1 antibody by at least 20%, preferably by at least 20-50%, even more preferably, by at least 50% as compared to a control performed in parallel in the absence of the candidate competing antibody (but may be in the presence of a 10 known non-competing antibody). It will be understood that variations of this assay can be performed to arrive at the same quantitative value.
The anti-CMKLR1 antibody or antigen-binding fragment thereof has an effect of a proresolution factor of inflammation, in particular has such an effect by interacting with myeloid cell lineages.
In a particular embodiment of the invention, a particular VHCDR2 is présent in antibodies which may présent a reduced immunogenicity in human, thereby allowing the provision of antibodies which may be more potent for therapeutic purposes, since less side-effects are expected when reduced-immunogenic antibodies are administered to a patient.
In a particular aspect of the invention, it is disclosed anti-Chemokin Like Receptor 1 20 (CMKLR1) antibody or an antigen-binding fragment thereof which binds to CMKLR1, in particular human CMKLR1, said antibody of antigen-binding fragment thereof comprising:
a. an antibody heavy chain variable (VH) domain comprising the three CDRs VHCDR1, VHCDR2 and VHCDR3, wherein:
- VHCDR1 is selected from the group consisting of SEQ ID No.3, SEQ ID No. 4, SEQ 25 ID No. 5, SEQ ID No. 6 and SEQ ID No. 7;
- VHCDR2 is selected from the group consisting of SEQ ID No. 9, SEQ ID No. 10, SEQ ID No. 11, SEQ ID No. 12 and SEQ ID No. 61;
- VHCDR3 is selected from the group consisting of SEQ ID No. 13, SEQ ID No. 14, SEQ ID No. 15 and SEQ ID No. 16;
b. an antibody light chain variable (VL) domain comprising the three CDRs
VLCDR1, VLCDR2 and VLCDR3, wherein:
- VLCDR1 is selected from the group consisting of SEQ ID No. 17, SEQ ID No.18,
SEQ ID No. 19, SEQ ID No. 20, SEQ ID No. 21, SEQ ID No. 22 and SEQ ID No. 23;
- VLCDR2 is selected from the group consisting of SEQ ID No. 24, SEQ ID No.25,
SEQ ID No. 26, SEQ ID No. 27, SEQ ID No. 28, SEQ ID No. 29, SEQ ID No.30,
SEQ ID No. 31, SEQ ID No. 32 and SEQ ID No. 33;
- VLCDR3 is selected from the group consisting of SEQ ID No. 34, SEQ ID No. 35 and SEQ ID No. 36.
In particular, the antibody or antigen-binding fragment thereof binds specifically to an epitope located within the third extra-cellular loop (EL3) of CMKLR1, more particularly the antibody or antigen-binding fragment thereof binds specifically to a polypeptide comprising amino acid sequence SEQ ID No: 2 or SEQ ID No. 59 or to an epitope located within amino acid sequence SEQ ID No. 60.
In another particular aspect of the invention, it is disclosed anti-Chemokin Like Receptor 1 (CMKLR1) antibody or an antigen-binding fragment thereof which binds to CMKLR1, in particular human CMKLR1, said antibody of antigen-binding fragment thereof comprising:
a. an antibody heavy chain variable (VH) domain comprising the three CDRs VHCDR1, VHCDR2 and VHCDR3, wherein:
- VHCDR1 is selected from the group consisting of SEQ ID No.3, SEQ ID No. 4, SEQ ID No. 5, SEQ ID No. 6 and SEQ ID No. 7;
- VHCDR2 is selected from the group consisting of SEQ ID No. 9, SEQ ID No. 10, SEQ ID No. 11 and SEQ ID No. 61; or VHCDR2 corresponds to the amino acid residues of SEQ ID No. 12 or SEQ ID No. 63 with the proviso that VHCDR1 is not SEQ ID No. 3 or SEQ ID No. 4;
- VHCDR3 is selected from the group consisting of SEQ ID No. 13, SEQ ID No. 14, SEQ ID No. 15 and SEQ ID No. 16;
b. an antibody light chain variable (VL) domain comprising the three CDRs VLCDR1, VLCDR2 and VLCDR3, wherein:
- VLCDR1 is selected from the group consisting of SEQ ID No. 17, SEQ ID No.18,
SEQ ID No. 19, SEQ ID No. 20, SEQ ID No. 21, SEQ ID No. 22 and SEQ ID No.23;
- VLCDR2 is selected from the group consisting of SEQ ID No. 24, SEQ ID No.25,
SEQ ID No. 26, SEQ ID No. 27, SEQ ID No. 28, SEQ ID No. 29, SEQ ID No.30,
SEQ ID No. 31, SEQ ID No. 32 and SEQ ID No. 33;
- VLCDR3 is selected from the group consisting of SEQ ID No. 34, SEQ ID No. 35 and SEQ ID No. 36.
In particular, the antibody or antigen-binding fragment thereof binds specifically to an epitope located within the third extra-cellular loop (EL3) of CMKLR1, more particularly the antibody or antigen-binding fragment thereof binds specifically to a polypeptide comprising amino acid sequence SEQ ID No: 2 or SEQ ID No. 59 or to an epitope located within amino acid sequence SEQ ID No. 60.
In another particular aspect of the invention, it is disclosed anti-Chemokin Like Receptor 1 (CMKLR1) antibody or an antigen-binding fragment thereof which binds to CMKLR1, in particular human CMKLR1, said antibody of antigen-binding fragment thereof comprising:
a. an antibody heavy chain variable (VH) domain comprising the three CDRs VHCDR1, VHCDR2 and VHCDR3, wherein:
- VHCDR1 is selected from the group consisting of SEQ ID No.3, SEQ ID No. 4, SEQ ID No. 5, SEQ ID No. 6 and SEQ ID No. 7;
VHCDR2 is selected from the group consisting of SEQ ID No. 9, SEQ ID No. 10, SEQ ID No. 11 and SEQ ID No. 61;
when VHCDR1 is SEQ ID No. 3 or SEQ ID No. 4 and VHCDR2 corresponds to the amino sequence of SEQ ID NO: 12 said heavy chain variable (VH) domain does not comprise a framework VHFR3 of SEQ ID No. 70, preferably with the proviso that said heavy chain variable (VH) domain comprises a framework FR3 of SEQ ID NO: 69, ; and
- VHCDR3 is selected from the group consisting of SEQ ID No. 13, SEQ ID No. 14, SEQ ID No. 15 and SEQ ID No. 16;
b. an antibody light chain variable (VL) domain comprising the three CDRs VLCDR1, VLCDR2 and VLCDR3, wherein:
- VLCDR1 is selected from the group consisting of SEQ ID No. 17, SEQ ID No.18,
SEQ ID No. 19, SEQ ID No. 20, SEQ ID No. 21, SEQ ID No. 22 and SEQ ID No.23;
- VLCDR2 is selected from the group consisting of SEQ ID .No. 24, SEQ ID No.25,
SEQ ID No. 26, SEQ ID No. 27, SEQ ID No. 28, SEQ ID No. 29, SEQ ID No.30,
SEQ ID No. 31, SEQ ID No. 32 and SEQ ID No. 33;
- VLCDR3 is selected from the group consisting of SEQ ID No. 34, SEQ ID No. 35 and SEQ ID No. 36.
In particular, the antibody or antigen-binding fragment thereof binds specifically to an epitope located within the third extra-cellular loop (EL3) of CMKLR1, more particularly the antibody or antigen-binding fragment thereof binds specifically to a polypeptide comprising amino acid sequence SEQ ID No: 2 or SEQ ID No. 59 or to an epitope located within amino acid sequence SEQ ID No. 60.
The binding to the epitope located within the third extra-cellular loop (EL3) of CMKLR1, in particular wherein the antibody or antigen-binding fragment thereof binds specifically to a polypeptide comprising amino acid sequence SEQ ID No: 2 or SEQ ID No. 59 or to an epitope located within amino acid sequence of SEQ ID No. 60, may be assessed according to the method disclosed here above. The particular sélection of VHCDR2 may allow the provision of antibodies with a reduced immunogenicity as compared to antibodies which hâve a different VHCDR2.
Such an antibody is an agonist of CMKLR1 mimicking the effect of a binding of Resolvin E1 to CMKLR1 ‘Le. having a Resolvin E1 -like capability as defined here above. The anti-CMKLR1 antibody or antigen-binding fragment thereof has an effect of a pro-resolution factor of inflammation, in particular has such an effect by interacting with myeloid cell lineages.
In a particular embodiment of the invention, the anti-CMKLR1 antibody or an antigen-binding fragment thereof comprises:
- VHCDR1 selected from the group consisting of SEQ ID No. 3 and SEQ ID No. 4.
In a particular embodiment of the invention, the anti-CMKLR1 antibody or an antigenbinding fragment thereof comprises:
- VHCDR2 selected from the group consisting of SEQ ID No. 9, SEQ ID No. 10, SEQ ID No. 11 and SEQ ID No. 61.
In a particular embodiment of the invention, the anti-CMKLR1 antibody or an antigenbinding fragment thereof comprises:
- VHCDR3 selected from the group consisting of SEQ ID No. 13, SEQ ID No. 14 and SEQ ID No. 15.
In a particular embodiment of the invention, the anti-CMKLR1 antibody or an antigenbinding fragment thereof comprises:
- VLCDR1 selected from the group consisting of SEQ ID No. 17, SEQ ID No. 18, SEQ ID No. 19 and SEQ ID No. 23.
In a particular embodiment of the invention, the anti-CMKLR1 antibody or an antigenbinding fragment thereof comprises:
- VLCDR2 selected from the group consisting of SEQ ID No. 24, SEQ ID No. 25, SEQ ID No. 26, SEQ ID No. 27 and SEQ ID No. 33.
In a particular embodiment of the invention, the anti-CMKLR1 antibody or an antigenbinding fragment thereof comprises:
- VLCDR3 selected from the group consisting of SEQ ID No. 34, SEQ ID No. 35 and SEQ ID No. 36.
In a particular embodiment of the invention, the anti-CMKLR1 antibody or an antigenbinding fragment thereof comprises:
- VHCDR1 selected from the group consisting of SEQ ID No. 3 and SEQ ID No. 4; and/or
- VHCDR2 selected from the group consisting of SEQ ID No. 9, SEQ ID No. 10, SEQ ID No. 11 and SEQ ID No. 61; and/or
- VHCDR3 selected from the group consisting of SEQ ID No. 13, SEQ ID No. 14 and SEQ IDNo. 15.
- VLCDR1 selected from the group consisting of SEQ ID No. 17, SEQ ID No. 18, SEQ ID No. 19 and SEQ ID No. 23, and/or
- VLCDR2 selected from the group consisting of SEQ ID No. 24, SEQ ID No. 25, SEQ ID No. 26, SEQ ID No. 27 and SEQ ID No. 33; and/or
- VLCDR3 selected from the group consisting of SEQ ID No. 34, SEQ ID No. 35 and SEQ ID No. 36.
In a particular embodiment, the anti-CMKLR1 antibody or an antigen-binding fragment thereof comprises the following CDRs: VHCDR1 of SEQ ID NO: 4, VHCDR2 of SEQ ID NO: 12,
VHCDR3 of SEQ ID NO: 13, VLCDR1 of SEQ ID NO: 19, VLCDR2 of SEQ ID NO: 26 and VLCDR3 of SEQ ID NO: 35.
In a particular embodiment of the invention, the anti-CMKLR1 antibody or an antigen-binding fragment thereof comprises a heavy chain variable domain comprising or consisting of an amino acid sequence selected from the group consisting of SEQ ID No. 38, SEQ ID No. 39, SEQ ID No. 40, SEQ ID No. 62, SEQ ID No. 89, SEQ ID No. 90 and SEQ ID No. 91.
In a more particular embodiment, the anti-CMKLR1 antibody or an antigen-binding fragment thereof comprises a heavy chain variable domain comprising or consisting of an amino acid sequence of SEQ ID No. 91.
In a particular embodiment of the invention, the anti-CMKLR1 antibody or an antigen-binding fragment thereof comprises a light chain variable domain comprising or consisting of an amino acid sequence selected from the group consisting of SEQ ID No. 49, SEQ ID No. 50, SEQ ID No. 51, SEQ ID No. 52, SEQ ID No. 53, SEQ ID No. 54, SEQ ID No. 55, SEQ ID No. 56, SEQ ID No. 57, SEQ ID No. 58, SEQ ID No. 92 and SEQ ID No. 93.
In a more particular embodiment of the invention, the anti-CMKLR1 antibody or an antigenbinding fragment thereof comprises a light chain variable domain comprising or consisting of an amino acid sequence of SEQ ID No. 93.
In a particular embodiment of the invention, the anti-CMKLR1 antibody or an antigen-binding fragment thereof comprises:
- a heavy chain variable domain comprising or consisting of an amino acid sequence selected from the group consisting of SEQ ID No. 38, SEQ ID No. 39, SEQ ID No. 40, SEQ ID No. 62, SEQ ID No. 89, SEQ ID No. 90 and SEQ ID No. 91; and
- a light chain variable domain comprising or consisting of an amino acid sequence selected from the group consisting of SEQ ID No. 49, SEQ ID No. 50, SEQ ID No. 51, SEQ ID No. 52, SEQ ID No. 53, SEQ ID No. 54, SEQ ID No. 55, SEQ ID No. 56, SEQ ID No. 57, SEQ ID No. 58, SEQ ID No. 92 and SEQ ID No. 93.
Any combination of a particular heavy chain variable domain and a light chain variable domain as disclosed herein is encompassed by the présent disclosure.
In a more particular embodiment, the anti-CMKLR1 antibody or an antigen-binding fragment thereof according to the invention comprises a heavy chain variable domain comprising or consisting of the amino acid residues selected from the group consisting of 38, SEQ ID No. 39, SEQ ID No. 40, and SEQ ID No. 62; and a light chain variable domain comprising or consisting of an amino acid sequence selected from the group consisting of SEQ ID No. 54, SEQ ID No. 55 and SEQ ID No. 56.
In a more particular embodiment of the invention, the anti-CMKLR1 antibody or an antigenbinding fragment thereof comprises a heavy chain variable domain comprising or consisting of an amino acid sequence SEQ ID No. 38 and a light chain variable domain of SEQ ID No. 49.
In a more particular embodiment of the invention, the anti-CMKLR1 antibody or an antigenbinding fragment thereof comprises a heavy chain variable domain comprising or consisting of an amino acid sequence of SEQ ID No. 91, and a light chain variable domain comprising or consisting of an amino acid sequence of SEQ ID No. 93.
In addition said antibody is advantageously characterized in that its Fc fragment is characteristic of an lgG1.
In a second aspect of the invention, it is disclosed a compound selected from the group of an antibody, an antigen-binding fragment thereof or a chimeric, modified or humanized antibody, which specifically binds to CMKLR1, in particular human CMKLR1, said compound comprising an antibody heavy chain variable domain comprising (i) VHCDR2 comprising or consisting of an amino acid sequence set forth in SEQ ID No: 9, SEQ ID No. 10, SEQ ID No. 11, SEQ ID No. 12 and SEQ ID No. 61, and (ii) VHCDR3 comprising or consisting of an amino acid sequence set forth in SEQ ID No: 13, SEQ ID No. 14, SEQ ID No. 15 and SEQ ID No. 16 or a mutated sequence thereof wherein amino acid residue(s) is(are) substituted provided that amino acid residues at positions 1 and 2 of the mutated sequence are respectively L and I; and wherein the anti-CMKLR1 compound binds specifically to an epitope located within the third extra-cellular loop (EL3) of CMKLR1, in particular wherein the compound binds specifically to a polypeptide comprising or consisting of amino acid sequence SEQ ID No: 2 or SEQ ID No. 59 or to an epitope located within amino acid sequence SEQ ID No. 60 ; and wherein said compound competes with an antibody comprising the heavy chain variable domain corresponding to SEQ ID No: 37 and the light chain variable domain corresponding to SEQ ID No: 49, for the binding to a polypeptide comprising or consisting of amino acid sequence of sequence SEQ ID No: 2 or SEQ ID No. 59 or of sequence SEQ ID No. 60 or to a polypeptide comprising or consisting of the third loop (EL3) of the extracellular domain of CMKLR1.
The combination of the heavy chain variable domain of SEQ ID No. 37 and light chain variable domain of SEQ ID No. 49 corresponds to the parental antibody 2G1. The binding of the compound to a polypeptide comprising or consisting of amino acid sequence of sequence SEQ ID No: 2 or SEQ ID No. 59 or located within SEQ ID No. 60 or to a polypeptide comprising or consisting of the third loop (EL3) of the extracellular domain of CMKLR1 may be assessed according to the method disclosed here above, and illustrated in the examples of the invention.
In a more particular embodiment, the anti-CMKLR1 antibody or an antigen-binding fragment thereof comprises a heavy chain variable domain comprising or consisting of an amino acid sequence of SEQ ID No. 91.
In a more particular embodiment of the invention, the anti-CMKLR1 antibody or an antigenbinding fragment thereof comprises a light chain variable domain comprising or consisting of an amino acid sequence of SEQ ID No. 93.
In a more particular embodiment of the invention, the anti-CMKLR1 antibody or an antigenbinding fragment thereof comprises a heavy chain variable domain comprising or consisting of an amino acid sequence of SEQ ID No. 91, and a light chain variable domain comprising or consisting of an amino acid sequence of SEQ ID No. 93.
In addition said antibody is advantageously characterized in that its Fc fragment is characteristic of an Ig G1.
The invention relates to any of the above defined compound of the invention, for use in the prévention and/or the treatment of a disease wherein the resolution of inflammation is delayed or disrupted, and/or a disease selected from the group of inflammatory diseases, in particular acute inflammatory diseases, chronic inflammatory diseases such as chronic inflammatory pulmonary diseases (e.g asthma), keratoconjunctivitis, periodontal disease, eczema, inflammatory bowel disease, in particular Crohn’s disease or colitis, in particular ulcerative colitis or spontaneous colitis, cystic fibrosis, cutaneous inflammation ; autoimmune diseases such as diabètes, NASH, in particular type I diabètes, psoriasis, lupus, rheumatoid arthritis, multiple sclerosis, Sjôgren’s syndrome, celiac disease, vasculitis, myasthenia gravis; infection diseases such as sepsis, severe viral indications with severe inflammatory conditions, such as coronavirus (e.g.COVID-19), peritonitis; degenerative diseases; wound healing disorders, dry eye syndrome; cancer diseases, in particular solid and liquid cancers, metastatic cancers, in particular carcinoma, in particular mammary carcinoma or colon carcinoma, or colorectal cancer or lung cancer or mesothelioma, or myeloid cancer, in particular leukemia, in particular a cancer wherein cancer cells express CMKLR1 or where the microenvironment of the tumor is invaded by cells expressing or overexpressing CMKLR1.
Fibrosis (notably lung and hepatic fibrosis), ANCA (Anti neutrophil Cytoplasmic Autoantibodies) pathologies (vasculitis), and pathologies due to apoptosis of neurons linked to ChermR23 are in particular concerned.
In a particular embodiment, the invention relates to any of the above defined compound of the invention, for use in the prévention and/or the treatment of a disease wherein the resolution of inflammation is delayed or disrupted, and/or a disease selected from the group of inflammatory diseases, in particular acute inflammatory diseases, chronic inflammatory diseases such as asthma, keratoconjunctivitis, periodontal disease, eczema, inflammatory bowel disease, in particular Crohn’s disease or colitis, in particular ulcerative colitis or spontaneous colitis; cystic fibrosis, autoimmune diseases such as diabètes, in particular type I diabètes, psoriasis, lupus, rheumatoid arthritis, multiple sclerosis, Sjôgren’s syndrome, celiac disease, vasculitis, myasthenia gravis; infection diseases such as sepsis, peritonitis; severe viral indications with severe inflammatory conditions, such as coronavirus (e.g.COVID-19), degenerative diseases; wound healing disorders, NASH (Nonalcoholic steatohepatitis), scleroderma, and dry eye syndrome. In another particular embodiment of the invention, the invention relates to any of the above defined compound of the invention, for use in the prévention and/or the treatment of a cancer, in particular solid and liquid cancers, metastatic cancers, in particular carcinoma, in particular mammary carcinoma or colon carcinoma, or colorectal cancer or lung cancer or myeloid cancer, in particular leukemia, in particular a cancer wherein cancer cells express CMKLR1 or where the microenvironment of the tumor is invaded by cells expressing or overexpressing CMKLR1.
In a particular embodiment, the antibody of the invention elicits at least one of the following effect in favor of resolution in vitro and/or in vivo:
- increases the apoptosis of polymorphonuclear neutrophils, referenced herein under the acronym PMN or PMNs, on the inflammation site; such an effect is illustrated in the examples of the invention. The régulation of apoptosis of neutrophils is crucial for therapeutic intervention in inflammatory related-diseases. As illustrated in the examples of the invention, the use of an agonist of CMKLR1 having Resolvin E1 -like capability antibody on PMNs induces a strong apoptosis of neutrophils, as compared to a control antibody, during the inflammation induction.
- enhances the caspase-3 expression in neutrophils, thereby leading to caspase-3 dépendent apoptosis; It may be considered that apoptosis is enhanced or induced when the expression of caspase-3 is over 1-log, more preferably 2-log, and most preferably 3-log, after 11 hours of treatment with an agonist of CMKLR1 having Resolvin E1-like capability antibody as compared to a négative control; a method is disclosed in the examples of the invention;
- reduces or inhibits transmigration through endothélium of PMNs (neutrophils) towards the site of inflammation; preventing them to relocate to the site of inflammation, and exert their pro-inflammation effects. In a particular embodiment of the invention, the migration and transmigration of neutrophils is prevented or reduced by the administration of an agonist of CMKLR1 having Resolvin E1-like capability lgG1 antibody. Therefore, in a particular embodiment, the Agonist of CMKLR1 having Resolvin E1-like capability is a humanized antibody with human constant régions derived or issued from human lgG1. In a particular embodiment, the Agonist of CMKLR1 having Resolvin E1-like capability antibody is of the human lgG1 isotype, i.e. the constant fragment of the heavy chain and of the light chain are derived or issued from a human lgG1 antibody constant heavy chain and light chain fragment. Accordingly, the agonist of CMKLR1 having Resolvin E1-like capability antibody of the présent invention comprises a Fc domain of lgG1 isotype. Transmigration of neutrophils may be assessed by the method disclosed in the examples of the invention; it may be considered that a neutrophil has a reduced migration and/or transmigration capability when the cell surface expression of CD62L is reduced by at least 1-log in a staining experiment, as compared to a négative control. The inventors found that agonist of CMKLR1 having Resolvin E1-like capability humanized lgG1 antibodies of the invention does not exhibit cytotoxicity in vivo-, in other words, the use of the agonist of CMKLR1 does not exhibit a significant déplétion of CMKLR1 -positive cells in vivo. In a particular embodiment, the use of the agonist of the invention does not exhibit a cytotoxic activity on CMKLR1-positive cells;
- decreases the cell surface expression of CMKLR1, and CXCR4 and/or CCR7. In a particular embodiment, the cell surface expression is considered on macrophages and/or dendritic cells. When the agonist of CMKLR1 having Resolvin E1 capability binds to its target, CMKLR1, and CXCR4 and/or CCR7 hand are heterodimerized 10 and internalized. In a preferred embodiment, the antibody of the invention does induce the internalization and/or inhibit the expression of CMLKLR1 and/or CXCR4 and/or CCR7 at the cell surface of CMKLR1-positive cells. Thus, the cell surface expression of CMLKLR1, and CXCR4 and/or CCR7 in cells incubated in the presence of the antibody is reduced, or is significantly reduced, relatively to cell surface expression in cells incubated in otherwise identical conditions, but in the absence of the Agonist of CMKLR1 having Resolvin E1-like capability.
In a particular aspect, the invention relates to humanized anti-Chemerin Like Receptor 1 (CMKLR1) antibody or an antigen-binding fragment thereof suitable for the production in mammalian cells such as COS or CHO cells with a yield over 0.1 mg/ml, in particular over 1 20 mg/ml, in particular over 10 mg/ml, and more particularly over 100 mg/ml, wherein:
a) the Variable Heavy (VH) domain comprises the amino acid sequence of the frameworks (FR1, FR2, FR3 and FR4) of a Heavy Chain variable domain wherein each framework harbors a sequence identity respectively with the framework of the same rank in the sequence of SEQ ID No. 41 that 100 % for FR1, at least 60 % for FR2, at least 78 % for
FR3 and at least 80 % for FR4; more particularly 100 % or FR1, at least 80 % for FR2, at least 85 % for FR3 and at least 90 % for FR4;
b) the Variable Light (VL) domain comprises the amino acid sequence of the frameworks (FR1, FR2, FR3 and FR4) of a Light Chain Variable domain wherein each framework harbors a sequence identity respectively with the framework of the same rank in the sequence of SEQ ID No.50 that is at least 60 % for FR1, at least 70 % for FR2, at least 75 % for FR3 and at least 80 % for FR4; and more particularly of 100% for FR1, at least 90 % for FR2, at least 90% for FR3 and 100 % for FR4.
In a particular embodiment, the humanized anti-CMKLR1 antibody or antigen binding fragment thereof specifically binds to the third extra-cellular loop (EL3) of CMKLR1, in 35 particular wherein the antibody or antigen-binding fragment thereof binds specifically to a polypeptide comprising amino acid sequence SEQ ID No: 2 or SEQ ID No. 59 or located within amino acid sequence SEQ ID No 60. This embodiment may lead to ease the production of antibodies (or antigen-binding fragment thereof) in vitro. It should be noted that this définition of the antibody is independent from any other définition of the anti-CMKLR1 antibody of the invention, including the définition of antibodies by CDR domains. In a particular aspect of the invention, the définition of the antibody of the invention by FR sequences may be combined by a définition with CDR domains and/or functional features. To this end, it is also encompassed by the présent invention the antibody defined by its FR domains and characterized by their CDR domains that are selected from a particular group. To this end, such an antibody, which may or may not exhibit identity to the framework domains as disclosed herein, comprises at least one, in particular six, of the following CDRs:
- a VHCDR1 selected from the group consisting of SEQ ID No.3, SEQ ID No. 4, SEQ ID No. 5, SEQ ID No. 6 and SEQ ID No. 7; and/or
- a VHCDR2 selected from the group consisting of SEQ ID No 9, SEQ ID No. 10, SEQ ID No. 11, SEQ ID No. 12, SEQ 61, SEQ ID No. 63 and SEQ ID No. 64; and/or
- a VHCDR3 selected from the group consisting of SEQ ID No. 13, SEQ ID No. 14, SEQ ID No. 15 and SEQ ID No. 16; and/or and wherein the Variable Light (VL) domain comprises:
- a VLCDR1 selected from the group consisting of SEQ ID No. 17, SEQ ID No. 18, SEQ ID No. 19, SEQ ID No. 20, SEQ ID No. 21, SEQ ID No. 22 and SEQ ID No. 23; and/or
- a VLCDR2 selected from the group consisting of SEQ ID No. 24, SEQ ID No. 25, SEQ ID No. 26, SEQ ID No. 27, SEQ ID No. 28, SEQ ID No. 29, SEQ ID No. 30, SEQ ID No. 31, SEQ ID No. 32 and SEQ ID No. 33; and/or
- a VLCDR3 selected from the group consisting of SEQ ID No. 34, SEQ ID No. 35 and SEQ ID No. 36.
In a more particular aspect, at least one of the framework domains HFR1, HFR2, HFR3, HFR4, LFR1, LFR2, LFR3 and LFR4 is selected from the following groups:
for VHFR1 of SEQ ID No. 65;
for VHFR2 of SEQ ID No. 66, SEQ ID No. 67 or SEQ ID NO. 68;
for VHFR3 of SEQ ID No. 69 or SEQ ID No. 70;
for VHFR4 of SEQ ID No: 71 ;
for VLFR1 of SEQ ID No. 72;
for VLFR2 of SEQ ID No. 73 or SEQ ID No. 74;
for VLFR3 of SEQ ID No. 75 or SEQ ID No. 76 for VLFR4 of SEQ ID No. 77.
It should be understood that a plurality of framework domains, or ail, may be selected from the groups recited here above.
In a more particular embodiment, the antibody or antigen-binding fragment thereof according to the two previous paragraphs has the amino acid sequence of the heavy chain variable domain selected from the group of SEQ ID No: 41, SEQ ID No: 38 SEQ ID No: 42,
SEQ ID No: 43 and the amino acid sequence of the light chain variable domain is the sequence of SEQ ID No: 50.
In a more particular embodiment, said antibody or antigen-binding fragment thereof comprises the following frameworks domains:
- VHFR1 of SEQ ID NO: 65
- VHFR2 of SEQ UD NO: 67,
- VHFR3 of SEQ ID NO: 69
- VHFR4 of SEQ ID NO: 71,
- VLFR1 of SEQ ID NO: 72,
- VLFR2 of SEQ ID NO: 73
- VLFR3 of SEQ ID NO: 76, and
- VLFR4 of SEQ ID NO: 77.
In a more particular embodiment, said antibody comprises the following frameworks domains:
- VHFR1 of SEQ ID NO: 65
- VHFR2 of SEQ ID NO: 67,
- VHFR3 of SEQ ID NO: 69
- VHFR4 of SEQ ID NO: 71,
- VLFR1 of SEQ ID NO: 72,
- VLFR2 of SEQ ID NO: 73
- VLFR3 of SEQ ID NO: 76,
- VLFR4 of SEQ ID NO: 77, and comprises the following CDRs:
- a VHCDR1 selected from the group consisting of SEQ ID No.3, SEQ ID No. 4, SEQ ID No. 5, SEQ ID No. 6 and SEQ ID No. 7; and/or
- a VHCDR2 selected from the group consisting of SEQ ID No 9, SEQ ID No. 10, SEQ ID No. 11, SEQ ID No. 12, SEQ 61, SEQ ID No. 63 and SEQ ID No. 64; and/or
- a VHCDR3 selected from the group consisting of SEQ ID No. 13, SEQ ID No. 14, SEQ ID No. 15 and SEQ ID No. 16; and/or and wherein the Variable Light (VL) domain comprises:
- a VLCDR1 selected from the group consisting of SEQ ID No. 17, SEQ ID No. 18, SEQ ID No. 19, SEQ ID No. 20, SEQ ID No. 21, SEQ ID No. 22 and SEQ ID No. 23; and/or
- a VLCDR2 selected from the group consisting of SEQ ID No. 24, SEQ ID No. 25, SEQ ID No. 26, SEQ ID No. 27, SEQ ID No. 28, SEQ ID No. 29, SEQ ID No. 30, SEQ ID No. 31, SEQ ID No. 32 and SEQ ID No. 33; and/or
- a VLCDR3 selected from the group consisting of SEQ ID No. 34, SEQ ID No. 35 and SEQ ID No. 36.
This embodiment may lead to ease the production of antibodies (or antigen-binding fragment thereof) in vitro.
The invention particularly relates to humanized anti-CMKLR1 antibody or an antigen-binding fragment thereof optimized to reduce immunogenicity while maintaining high binding activity and 5 stability and biological functions, said antibody or antigen-binding fragment thereof comprises the following CDRs:
- a VHCDR1 of SEQ ID NO: 4,
- a VHCDR2 of SEQ ID NO: 12,
- a VHCDR3 of SEQ ID NO: 13,
- a VLCDR1 of SEQ ID NO: 19
- a VLCDR2 of SEQ ID NO: 26, and
- a VLCDR3 of SEQ ID NO: 35.
In a particular embodiment, said antibody or an antigen-binding fragment thereof whose CDRs sequences are SEQ ID NO: 4, 12, 13, 19, 26 and 35 comprises the following frameworks 15 domains:
- a VHFR1 of SEQ ID NO: 65
- a VHFR2 of SEQ ID NO: 67, .
- a VHFR3 of SEQ ID NO: 69
- a VHFR4 of SEQ ID NO: 71,
- a VLFR1 of SEQ ID NO: 72,
- a VLFR2 of SEQ ID NO: 73
- a VLFR3 of SEQ ID NO: 76,
- a VLFR4 of SEQ ID NO: 77.
The présent disclosure particularly relates to an antibody anti-CMKLR1 or an antigen25 binding fragment thereof optimized to reduce immunogenicity while maintaining high binding activity and stability and biological functions which is suitable for in vitro production. The antibody anti-CMKLR1 or an antigen-binding according to the previous paragraph has the amino acid sequence of the heavy chain variable domain of SEQ ID No: 91, and the amino acid sequence of the light chain variable domain is the sequence of SEQ ID No: 93.
In addition said antibody is advantageously characterized in that its Fc fragment is characteristic of an lgG1.
In a particular embodiment, the antibodies of the invention may be characterized by the amino acid sequence of framework domains as disclosed above and further characterized by the amino acid sequence of at least one of their CDR domains. In particular, the humanized 35 anti- CMKLR1 antibody or an antigen binding fragment thereof according to this embodiment harbors a Heavy Chain variable domain VHCDR2 comprising or consisting of an amino acid sequence selected from the group consisting of SEQ ID No 9, SEQ ID No. 10, SEQ ID No. 11, SEQ ID No. 12, SEQ 61, SEQ ID No. 63 and SEQ ID No. 64.
In a particular embodiment of the invention, it is provided an antibody or antigen-binding fragment thereof, which comprises:
c) an antibody heavy chain variable (VH) domain comprising the three CDRs VHCDR1, VHCDR2 and VHCDR3, wherein:
- VHCDR1 is selected from the group consisting of SEQ ID No.3, SEQ ID No. 4, SEQ ID No. 5, SEQ ID No. 6 and SEQ ID No. 7;
- VHCDR2 is selected from the group consisting of SEQ ID No. 9, SEQ ID No. 10, SEQ ID No. 11 and SEQ 61; or VHCDR2 corresponds to the amino acid residues of SEQ ID No. 12 with the proviso that VHCDR1 is not SEQ ID No. 4;
- VHCDR3 is selected from the group consisting of SEQ ID No. 13, SEQ ID No. 14, SEQ ID No. 15 and SEQ ID No. 16;
d) an antibody light chain variable (VL) domain comprising the three CDRs VLCDR1, VLCDR2 and VLCDR3, wherein:
- VLCDR1 is selected from the group consisting of SEQ ID No. 17, SEQ ID No.18,
SEQ ID No. 19, SEQ ID No. 20, SEQ ID No. 21, SEQ ID No. 22 and SEQ ID No.23;
- VLCDR2 is selected from the group consisting of SEQ ID No. 24, SEQ ID No.25,
SEQ ID No. 26, SEQ ID No. 27, SEQ ID No. 28, SEQ ID No. 29, SEQ ID No.30,
SEQ ID No. 31, SEQ ID No. 32 and SEQ ID No. 33;
- VLCDR3 is selected from the group consisting of SEQ ID No. 34, SEQ ID No. 35 and SEQ ID No. 36;
for the préventive or the therapeutic treatment of:
- an inflammatory disease, in particular acute inflammatory diseases, chronic inflammatory diseases such as chronic inflammatory pulmonary diseases (e.g. asthma), keratoconjunctivitis, periodontal disease, eczema, inflammatory bowel disease, in particular Crohn’s disease or colitis, in particular ulcerative colitis or spontaneous colitis, cystic fibrosis, NASH (Nonalcoholic steatohepatitis), hepatic fibrosis, lung fibrosis, anti -neutrophil cytoplasm antibodies-related disease (ANCA), vasculitis, in particular ANCA mediated vasculitis, scleroderma, in particular wherein, as a resuit of the administration of the treatment, the resolution of inflammation is enhanced;
- an autoimmune disease such as diabètes, in particular type I diabètes, psoriasis, lupus, rheumatoid arthritis, multiple sclerosis, Sjôgren’s syndrome, celiac disease, vasculitis, myasthenia gravis, or an infection disease such as sepsis, peritonitis, degenerative diseases, wound healing disorders or dry eye syndrome, severe viral indications with severe inflammatory conditions, such as coronavirus (e.g.COVID19), in particular wherein, as a resuit of the administration of the treatment, the resolution of inflammation is enhanced;
- a cancer, in particular metastatic cancers, solid or liquid cancers such as carcinoma, more particularly hepatocarcinoma, in particular mammary carcinoma or colon carcinoma, or lung cancer or myeloid cancer such as leukemia, in particular a cancer wherein cancer cells express CMKLR1 or where the microenvironment of the tumor is invaded by cells expressing or overexpressing CMKLR1, in particular wherein, as a resuit of the administration of the treatment, the resolution of inflammation is enhanced.
In another particular embodiment of the invention, it is provided an antibody or antigenbinding fragment thereof, which comprises:
e) an antibody heavy chain variable (VH) domain comprising the three CDRs VHCDR1, VHCDR2 and VHCDR3, wherein:
- VHCDR1 is selected from the group consisting of SEQ ID No.3, SEQ ID No. 4, SEQ ID No. 5, SEQ ID No. 6 and SEQ ID No. 7;
- VHCDR2 is selected from the group consisting of SEQ ID No. 9, SEQ ID No. 10, SEQ IDNo. 11 and SEQ 61;
when VHCDR1 is SEQ ID No. 3 or SEQ ID No. 4 and VHCDR2 corresponds to the amino sequence of SEQ ID NO: 12, said heavy chain variable (VH) domain does not comprise a framework VHFR3 of SEQ ID No. 70, preferably with the proviso that said heavy chain variable (VH) domain comprises a framework FR3 of SEQ ID NO: 69,
- VHCDR3 is selected from the group consisting of SEQ ID No. 13, SEQ ID No. 14, SEQ ID No. 15 and SEQ ID No. 16;
f) an antibody light chain variable (VL) domain comprising the three CDRs VLCDR1, VLCDR2 and VLCDR3, wherein:
- VLCDR1 is selected from the group consisting of SEQ ID No. 17, SEQ ID No.18,
SEQ ID No. 19, SEQ ID No. 20, SEQ ID No. 21, SEQ ID No. 22 and SEQ ID No.23;
- VLCDR2 is selected from the group consisting of SEQ ID No. 24, SEQ ID No.25,
SEQ ID No. 26, SEQ ID No. 27, SEQ ID No. 28, SEQ ID No. 29, SEQ ID No.30,
SEQ ID No. 31, SEQ ID No. 32 and SEQ ID No. 33;
VLCDR3 is selected from the group consisting of SEQ ID No. 34, SEQ ID No. 35 and SEQ ID No. 36; for the préventive or the therapeutic treatment of the diseases as described above.
In a particular embodiment of the invention, the humanized antibody or antigen-binding fragment thereof, or antigen-binding antibody mimetic or modified antibody comprises:
g) the Variable Heavy (VH) domain comprises the amino acid sequence of the frameworks (FR1, FR2, FR3 and FR4) of a Heavy Chain variable domain wherein each framework harbors a sequence identity respectively with the framework of the same rank in the sequence of SEQ ID No. 41 that 100 % for FR1, at least 60 % for FR2, at least 78 % for
FR3 and at least 80 % for FR4; more particularly 100 % or FR1, at least 80 % for FR2, at least 85 % for FR3 and at least 90 % for FR4;
h) The Variable Light (VL) domain comprises the amino acid sequence of the frameworks (FR1, FR2, FR3 and FR4) of a Light Chain Variable domain wherein each framework harbors a sequence identity respectively with the framework of the same rank in the sequence of SEQ ID No.50 that is at least 60 % for FR1, at least 70 % for FR2, at least 75 % for FR3 and at least 80 % for FR4, and more particularly of 100% for FR1, at least 90 % for FR2, at least 90% for FR3 and 100 % for FR4;
for the préventive or the therapeutic treatment of:
- an inflammatory disease, in particular acute inflammatory diseases, chronic inflammatory diseases such as chronic inflammatory pulmonary diseases (e.g. asthma), keratoconjunctivitis, periodontal disease, eczema, inflammatory bowel disease, in particular Crohn’s disease or colitis, in particular ulcerative colitis or spontaneous colitis, cystic fibrosis, NASH (Nonalcoholic steatohepatitis), hepatic fibrosis, lung fibrosis, anti -neutrophil cytoplasm antibodies-related disease (ANCA), vasculitis, in particular ANCA mediated vasculitis, scleroderma, in particular wherein, as a resuit of the administration of the treatment, the resolution of inflammation is enhanced;
- an autoimmune disease such as diabètes, in particular type I diabètes, psoriasis, lupus, rheumatoid arthritis, multiple sclerosis, Sjôgren’s syndrome, celiac disease, vasculitis, myasthenia gravis, or an infection disease such as sepsis, peritonitis, degenerative diseases, wound healing disorders, severe viral indications with severe inflammatory conditions, such as coronavirus (e.g.COVID-19), or dry eye syndrome, in particular wherein, as a resuit of the administration of the treatment, the resolution of inflammation is enhanced;
- a cancer, in particular metastatic cancers, solid or liquid cancers such as carcinoma, more particularly hepatocarcinoma, in particular mammary carcinoma or colon carcinoma, or lung cancer or myeloid cancer such as leukemia, in particular a cancer wherein cancer cells express CMKLR1 or where the microenvironment of the tumor is invaded by cells expressing or overexpressing CMKLR1, in particular wherein, as a resuit of the administration of the treatment, the resolution of inflammation is enhanced.
In a particular embodiment, the antibody comprises the following frameworks domains,
- a VHFR1 of SEQ ID NO: 65
- a VHFR2 of SEQ UD NO: 67,
- a VHFR3 of SEQ ID NO: 69
- a VHFR4 of SEQ ID NO: 71,
- a VLFR1 of SEQ ID NO: 72,
- a VLFR2 of SEQ ID NO: 73
- a VLFR3 of SEQ ID NO: 76,
- a VLFR4 of SEQ ID NO: 77, and comprises the foilowing CDRs:
- VHCDR1 is selected from the group consisting of SEQ ID No.3, SEQ ID No. 4, SEQ ID No. 5, SEQ ID No. 6 and SEQ ID No. 7; and/or
- VHCDR2 is selected from the group consisting of SEQ ID No. 9, SEQ ID No. 10, SEQ ID No. 11, SEQ ID No. 12 and SEQ No. 61;
- VHCDR3 is selected from the group consisting of SEQ ID No. 13, SEQ ID No. 14, SEQ ID No. 15 and SEQ ID No. 16;
and wherein the Variable Light (VL) domain comprises:
- a VLCDR1 is selected from the group consisting of SEQ ID No. 17, SEQ ID No. 18,
SEQ ID No. 19, SEQ ID No. 20, SEQ ID No. 21, SEQ ID No. 22 and SEQ ID No. 23;
and/or
- VLCDR2 is selected from the group consisting of SEQ ID No. 24, SEQ ID No. 25,
SEQ ID No. 26, SEQ ID No. 27, SEQ ID No. 28, SEQ ID No. 29, SEQ ID No. 30,
SEQ ID No. 31, SEQ ID No. 32 and SEQ ID No. 33; and/or
- VLCDR3 is selected from the group consisting of SEQ ID No. 34, SEQ ID No. 35 and SEQ ID No. 36 and is for use in the préventive or therapeutic treatment of:
- an inflammatory disease, in particular acute inflammatory diseases, chronic inflammatory diseases such as chronic inflammatory pulmonary diseases (e.g. asthma), keratoconjunctivitis, periodontal disease, eczema, inflammatory bowel disease, in particular Crohn’s disease or colitis, in particular ulcerative colitis or spontaneous colitis, cystic fibrosis, NASH (Nonalcoholic steatohepatitis), hepatic fibrosis, lung fibrosis, anti -neutrophil cytoplasm antibodies-related disease (ANCA), vasculitis, in particular ANCA mediated vasculitis, scleroderma, in particular wherein, as a resuit of the administration of the treatment, the resolution of inflammation is enhanced;
- an autoimmune disease such as diabètes, in particular type l diabètes, psoriasis, lupus, rheumatoid arthritis, multiple sclerosis, Sjôgren’s syndrome, celiac disease, vasculitis, myasthenia gravis, or an infection disease such as sepsis, peritonitis, degenerative diseases, wound healing disorders, severe viral indications with severe inflammatory conditions, such as coronavirus (e.g.COVID-19), or dry eye syndrome, in particular wherein, as a resuit of the administration of the treatment, the resolution of inflammation is enhanced;
- a cancer, in particular metastatic cancers, solid or liquid cancers such as carcinoma, more particularly hepatocarcinoma, in particular mammary carcinoma or colon carcinoma, or lung cancer or myeloid cancer such as leukemia, in particular a cancer wherein cancer cells express CMKLR1 or where the microenvironment of the tumor is invaded by cells expressing or overexpressing CMKLR1, in particular wherein, as a resuit of the administration of the treatment, the resolution of inflammation is enhanced.
Such particular antibody or antigen-binding fragment thereof for the préventive or therapeutic treatment of one of the conditions disclosed above is particular characterized in that it comprises the following CDRs: VHCDR1 of SEQ ID NO: 4, VHCDR2 of SEQ ID NO: 12, VHCDR3 of SEQ ID NO: 13 and, VLCDR1 of SEQ ID NO: 19, VLCDR2 of SEQ ID NO: 26, VLCDR3 of SEQ ID NO: 35 and the following frameworks VHFR1 of SEQ ID NO: 65, VHFR2 of SEQ ID NO: 67, VHFR3 of SEQ ID NO: 69, VHFR4 of SEQ ID NO: 71, VLFR1 of SEQ ID NO: 72, VLFR2 of SEQ ID NO: 73, VLFR3 of SEQ ID NO: 76, VLFR4 of SEQ ID NO: 77. In particular for the above disclosed préventive or therapeutic use of the antibody or antigenbinding fragment thereof, the amino acid sequence of the heavy chain variable domain of the antibody comprises or consists of SEQ ID NO: 91 and the amino acid sequence of the light chain variable domain of the antibody comprises or consists of SEQ ID NO: 93.
In another aspect, the invention relates to a composition comprising an anti-CMKLR1 compound as described herein, in particular a pharmaceutical composition comprising an antiCMKLR1 compound according to the invention and a further therapeutic agent, or pharmaceutical acceptable carrier. In a particular embodiment, the invention relates to a composition comprising an anti-CMKLR1 compound according to the invention and a therapeutic agent selected from the group consisting of immunomodulatory agent, immune checkpoint blocker, immune checkpoint activator, antibody, or anti-SIRPa antibody (P84 - antimouse SIRPa from Merck Millipore).
In another aspect, the invention relates to a combination of compounds comprising an antiCMKLR1 compound as described herein, in particular a pharmaceutical composition comprising an anti-CMKLR1 compound according to the invention and an anti-PD1 or an anti-PDL1 compound, in particular an anti-PD1 compound; such a compound is in particular selected from the group consisting of an antibody, an antigen-binding antibody fragment, an antigen-binding antibody mimetic, a small molécule like an aptamer or a peptide, a modified antibody, like but not limited to a humanized or a chimeric antibody, able to bind to PD1 or PDL1.
In another aspect, the invention relates to a combination of compounds comprising an antiCMKLR1 compound as described herein, in particular a pharmaceutical composition comprising an anti-CMKLR1 compound according to the invention and an anti-SIRPa compound; such a compound is in particular selected from the group consisting of an antibody, an antigen-binding antibody fragment, an antigen-binding antibody mimetic, a small molécule like an aptamer or a peptide, a modified antibody, like but not limited to a humanized or a chimeric antibody, able to bind to SIRPa, in particular human SIRPa.
The invention also relates to a combination, for instance for fibrosis treatment, comprising a therapeutic compound, which is or not a cytokine, and which stimulâtes pro-resolution macrophages.
In another aspect, the invention concerns the therapeutic use of the anti-CMKLR1 compound of the invention, especially for inducing and/or enhancing the resolution of inflammation, in particular for inducing and/or enhancing the resolution of inflammation when said resolution is delayed or disrupted, in view of treating diseases wherein the extension of the inflammation is pathologie, or wherein the duration of the resolution of inflammation is pathologie.
In a particular embodiment of the invention, the anti-CMKLR1 compound binds CMKLR1 with an affinity (KD value) of at least 10E-8 M, more preferably with an affinity of at least 10E-9 M. The spécifie binding between the antibody, or antigen-binding fragment thereof, or antigenbinding antibody mimetic or modified antibody of the invention and CMKLR1 (or a région of CMKLR1 comprising the third extra-cellular loop, including amino acid sequences set forth in SEQ ID No: 2 and 59 or located within amino acid sequences of SEQ ID No. 60) implies that the antibody exhibits appréciable affinity for CMKLR1. “Appréciable affinity” includes binding with an affinity of about 10-8 M (KD) or stronger. Preferably, binding is considered spécifie when the binding affinity is between 10‘8 M and 10’12 M, optionally between 10'9 M and 10'1° M, in particular at least 10'9 M. Whether a binding domain specifically reacts with or binds to a target can be tested readily by, inter alia, comparing the reaction of said binding domain with a target protein or antigen with the reaction of said binding domain with proteins or antigens other than the target protein. Such an antibody of the invention specifically binds CMKLR1 and has an agonist effect towards the interaction between RvE1 and CMKLR1. Methods for determining antibody specificity and affinity by compétitive inhibition are known in the art (see, e.g., Harlow et al., Antibodies: A Laboratory Manual, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY (1998); Colligan et al., Current Protocols in Immunology, Green Publishing Assoc., NY (1992; 1993); Muller, Meth. Enzym, 92:589-601 (1983)). These methods include, but are not limited to, Biacore Analysis, Blitz analysis, flow cytometry and ELISA assay.
In a particular embodiment of the invention, the anti-CMKLR1 compound binds specifically to an epitope localized within the third extra-loop of CMKLR1, in particular to an epitope localized within amino acid residue sequences set forth in SEQ ID No: 2 or SEQ ID No: 59 or SEQ ID No. 60, in particular SEQ ID No: 2. An anti-CMKLR1 compound binding within this particular région of CMKLR1 may hâve an agonist property on CMKLR1, thereby mimicking the binding of RvE1 to CMKLR1.
In another aspect, the invention relates to an anti-CMKLR1 antibody or antigen-binding fragment thereof or antigen-binding antibody mimetic or modified antibody as defined here above, which has an agonist capability towards the interaction between RvE1 and CMKLR1, for use as a médicament.
38 . .
In another aspect, the invention relates to an anti-CMKLR1 antibody or antigen-binding fragment thereof or antigen-binding antibody mimetic or modified antibody as defined here above, which has the capability to induce the activation of Akt and/or Erk protein(s) in vitro and/or in vivo. The activation of these proteins may be assessed by the methods described in 5 the examples of the présent invention. In particular, the anti-CMKLR1 antibody or antigenbinding fragment thereof or antigen-binding antibody mimetic or modified antibody has the capability to activate either Akt and/or Erk protein, or both, in macrophages, in particular in human macrophages.
The présent invention also relates to a method of treatment in a subject in need thereof 10 comprising administering to said subject an effective amount of an anti-CMKLR1 antibody or antigen-binding fragment thereof or antigen-binding antibody mimetic as defmed above, which has an agonist capability towards the interaction between RvE1 and CMKLR1, or in other words which is an RvE1-agonist like factor or modulator.
Modifying the polarization of macrophages to favour anti-inflammatory cells can be useful in 15 a number of pathologies or situations. As described above, this modification is particularly useful in the context of a disease selected from the group of inflammatory diseases, including but not limited to acute inflammatory diseases and chronic inflammatory diseases, inflammatory bowel disease, Crohn’s disease, asthma, keratoconjunctivitis, periodontal disease, eczema, colitis, in particular ulcerative colitis or spontaneous colitis, cystic fibrosis; diabètes, in particular 20 type I diabètes, peritonitis, psoriasis, carcinoma, in particular mammary carcinoma or colon carcinoma, cancers, metastatic cancers, lung cancer, degenerative disease, infection disease, in particular sepsis, autoimmune diseases, NASH, scleroderma, colitis or Crohn’s disease in a subject that is refractory to corticosteroids and/or immunosuppressive treatment.
The présent invention also relates to the use of an anti-CMKLR1 antibody or antigen-binding 25 fragment thereof or antigen-binding antibody mimetic as defined above, which has a Resolvin E1 -like agonist capability, in the manufacture of a médicament.
In another aspect, the invention relates to an anti-CMKLR1 antibody or antigen-binding fragment thereof or antigen-binding antibody mimetic or modified antibody, like but not limited to humanized or chimeric antibody, as defined here above, for its use in the treatment of a chronic 30 inflammatory disease, in particular for treating chronic colitis.
In another aspect, the invention relates to an anti-CMKLR1 antibody or antigen-binding fragment thereof or antigen-binding antibody mimetic as defined above, which has an agonist activity towards the interaction of CMKLR1 for use in the treatment of a delayed or disrupted resolution of an inflammatory condition, in particular an inflammatory disease wherein its 35 resolution is delayed or disrupted, and/or in the treatment or the prévention of a disease selected from the group of inflammatory diseases, including but not limited to acute inflammatory diseases and chronic inflammatory diseases, inflammatory bowel disease, Crohn’s disease, asthma, keratoconjunctivitis, periodontal disease, eczema, colitis, in particular ulcerative colitis or spontaneous colitis, cystic fibrosis, diabètes, in particular type I diabètes, peritonitis, psoriasis, carcinoma, in particular mammary carcinoma or colon carcinoma, cancers, degenerative disease, infection disease, in particular sepsis, autoimmune diseases.
As defined herein, “a delay or a disruption in the resolution of an inflammatory condition” 5 occurs when the resolution of inflammation is delayed or disrupted as compared to a normal resolution (i.e. the resolution occurring in a patient who expériences physiological resolution after an inflammatory event). A resolution delay or defect can resuit in an increased pénétration of granulocytes at the inflammatory site. Hence, a resolution delay or defect may be assessed by quantification of granulocytes at the inflammatory site. Granulocyte population may be 10 measured for example by histology, cytometry or indirect biochemical techniques such as elastase quantification by enzyme immunoassay or molecular quantification by PCR of granulocyte receptor 1). A resolution delay or defect may also be assessed by the détermination of a delay in the apoptosis of granulocytes, measured for example by cytology using spécifie antibodies against annexin 5. A defect or a delay in the resolution of the inflammation may also 15 be determined by assessing by quantifying the synthesis of pro-inflammatory cytokines such as TNF-alpha, IL8 or IL12 and anti-inflammatory cytokines such as 1L-10. Cytokine sécrétion may be assessed by enzyme immunoassay or by PCR. A defect or a delay in the resolution of the inflammation may also be determined by assessing the activation of transcription factors involved in the synthesis of inflammatory cytokines, such as NF-kappaB which can be 20 measured for example by nuclear translocation or by Western blot and/or by quantification of the level of dégradation of IkappaB). A defect or a delay in the resolution of the inflammation may also be determined by quantifying specialized pro-resolving mediators (such as lipoxins, resolvins, protectins or maresins) or their precursors (like 17-HDOHE or 14-HDOHE) by mass spectrometry or enzyme immunoassay. A defect or a delay of the resolution then results in a 25 defect of the synthesis of one or more of these mediators. A resolution defect or delay can also be determined when expression of the receptors of the resolution molécules is decreased. These receptors may be selected from the group comprising ALX, CMK1R1, GPR32 or GPR18. Alternatively or complementarily, the internalization and Processing of those receptors into the cytoplasm may also be assessed. Alternatively or complementarily, expression of some 30 receptors of inflammatory cytokines or lipids may also be assessed, an overexpression compared to a normal condition being significant of a delay or a defect in the resolution of the inflammation. These conditions may be measured by histology, cytology or PCR. The resolution defect can also resuit in a decreased or inhibited switch of pro-inflammatory to pro-resolutive macrophages, a damage in phagocytosis or efferocytosis of the same cells. Hence, a delay or a 35 defect of the resolution may be assessed by analyzing the switch of pro-inflammatory to proresolutive macrophages in a particular condition as compared to a normal condition, as exemplified in the examples of the présent invention.
According to a particular embodiment, anti-CMKLR1 compound can be used to treat an individual who has a cancer selected from the group consisting of mammary cancer, in particular mammary carcinoma cancer, melanoma, colon cancer, in particular colon carcinoma cancer, leukemia, in particular acuter myeloid leukemia, in particular when cancer cells over5 express CMKLR1.
In an embodiment, the invention relates to an anti-human CMKLR1 antibody or antigenbinding fragment thereof or antigen-binding antibody mimetic or modified antibody as defined above, for its uses as defined above, wherein said anti-human CMKLR1 antibody or antigenbinding fragment thereof or antigen-binding antibody mimetic or modified antibody of the 10 invention is administered to a patient presenting a CMKLR1 -positive tumor.
The antibody or antigen-binding fragment thereof of the invention can be administered in a variety of suitable routes, e.g., intravenously (IV), subcutaneously (SC), or, intramuscularly (IM) to the subject. The anti-CMKLR1 compound can be administered alone or in combination with another therapeutic agent, e.g., a second human monoclonal antibody or antigen binding 15 fragment thereof. In another example, the antibody is administered together with another agent, for example, an immunosuppressive agent, an erythropoiesis-stimulating agent (ESA), in combination with therapeutic cell compositions, and the like. In an embodiment, the invention relates to an anti-CMKLR1 compound or antigen-binding fragment thereof or antigen-binding antibody mimetic for its use as defined above, wherein the anti-CMKLR1 antibody or antigen20 binding fragment is combined with a second therapeutic agent.
The administration of the second therapeutic agent can be simultaneous or not with the administration of the anti-CMKLR1 compound. Depending on the nature of the second agent, a co-administration can be prepared in the form of a combination drug (product), also known as a “combo”. A combo is a fixed-dose combination that includes two or more active pharmaceutical 25 ingrédients combined in a single dosage form, which is manufactured and distributed in fixed doses. But the dose regimen and/or the administration route can also differ.
In a preferred embodiment, this second therapeutic agent is selected from the group consisting of chemotherapeutic agents, radiotherapy agents, immunotherapeutic agents, cell therapy agents (such as CAR-T cells), antibiotics and probiotics.
In particular, immunotherapeutic agents useful in the context of the invention are selected from the group consisting of therapeutic vaccines (DNA, RNA or peptide vaccines), immune checkpoint blockers or activators, in particular of adaptive immune cells (T or B lymphocytes) or immunoconjugates such as antibody-drug conjugales.
As used herein, the term “immunotherapeutic agents” refers in particular to agents that 35 could take cancer vaccines from interesting biological phenomena to effective therapeutic agents including: T-cell growth factors to increase number and répertoire of naive T cells, growth factors to increase the number of dendritic cells (DCs), agonists to activate DCs and other antigen-presenting cells (APCs), adjuvants to allow and augment cancer vaccines, agonists to activate and stimulate T cells, inhibitors of T-cell checkpoint blockade, T-cell growth factors to increase the growth and survival of immune T cells, agents to inhibit, block, or neutralize cancer cell and immune cell-derived immunosuppressive cytokine.
Numerous immune checkpoint blocker or activator are known in the art. In the context of the 5 invention, examples of immune checkpoint blockers or activators of adaptive immune cells (B or T lymphocytes) that could be useful are anti-PDL1, anti-PD1, anti-CTLA4, anti-SIRPa; antiCD137, anti-CD2, anti-CD28, anti-CD40, anti-HVEM, anti-BTLA, anti-CD160, anti-TIGIT, antiTIM-1/3, anti-LAG-3, anti-2B4, and anti-OX40, anti-CD40 agonist, CD40-L, TLR agonists, antiICOS, ICOS-L and B-cell receptor agonists, in particular anti-CD137 and anti-SIRPa. In a 10 particular embodiment of the invention, the second therapeutic agent is an anti-PDL1 or an antiPD1 compound, in particular an anti-PD1 compound, and more particularly an anti-PD1 antibody. In a particular embodiment of the invention, the second therapeutic agent is an antiSIRPa compound, in particular an anti-SIRPa antibody
Said immunotherapeutic agent can also be an antibody targeting tumoral antigen, 15 particularly selected from the group consisting of anti-Her2, anti-EGFR, anti-CD20, anti-CD19, anti-CD52.
The antibody may be provided at an effective dose from about 1 ng/kg body weight to about 30 mg/kg body weight, or more. In spécifie embodiments, the dosage may range from 1 pg/kg to about 20 mg/kg, optionally from 10 pg/kg up to 10 mg/kg or from 100 pg/kg up to 5 mg/kg.
The term “effective dose” or “effective dosage” or “effective amount” is defined as an amount sufficient to achieve or at least partially achieve the desired effect. The term “effective dose” is meant to encompass an amount sufficient to cure or at least partially arrest the disease and its complications or alleviate the symptoms of the disease in a patient already suffering from the disease. Amounts or doses effective for this use will dépend on the condition to be treated, the 25 delivered antibody construct, the therapeutic context and objectives, the severity of the disease, prior therapy, the patient's clinical history and response to the therapeutic agent, the route of administration, the size (body weight, body surface or organ size) and/or condition (the âge and general health) of the patient, and the general state of the patient's own immune System. The proper dose can be adjusted such that it can be administered to the patient once or over a 30 sériés of administrations, and in order to obtain the optimal therapeutic effect.
Dosing for such purposes may be repeated as required, e.g. daily, semi-weekly, weekly, semi-monthly, monthly, or as required during relapses.
In another aspect, the invention relates to a pharmaceutical composition comprising an antibody or antigen-binding fragment thereof as defined above and a pharmaceutically 35 acceptable carrier.
As used herein, a pharmaceutical composition is meant to encompass a composition suitable for administration to a subject or patient, such as a mammal, especially a human. In general, a pharmaceutical composition is stérile and is usually free of contaminants that are capable of eliciting an undesirable response within the subject (e.g. the compound(s) in the pharmaceutical composition is pharmaceutical grade). Pharmaceutical compositions can be designed for administration to subjects or patients in need thereof via a number of different routes of administration including oral, buccal, rectal, parentéral, intraperitoneal, intradermal, 5 intratracheal and the like.
As used herein, a pharmaceutically acceptable carrier is meant to encompass an excipient, diluent, carrier, and adjuvant that are useful in preparing a pharmaceutical composition that are generally safe, non-toxic and neither biologically nor otherwise undesirable, and include an excipient, diluent, carrier, and adjuvant that are acceptable for 10 veterinary use as well as human pharmaceutical use. A pharmaceutically acceptable carrier as used herein includes both one and more than one such excipient, diluent, carrier, and adjuvant.
In particular, the invention relates to a pharmaceutical composition which comprises as an active ingrédient an antibody or antigen-binding fragment thereof as defined above and a pharmaceutically acceptable carrier.
In another aspect, the invention relates to a therapeutic means, in particular a combination product means, which comprises as active ingrédients: an anti-SIRPa antibody or antigenbinding fragment thereof or antigen-binding antibody mimetic as defined above and a second therapeutic agent, wherein said active ingrédients are formulated for separate, sequential or combined therapy, in particular for combined or sequential use.
In particular, the invention relates to a combination product comprising an anti-CMKLR1 compound as defined above and a second therapeutic agent for simultaneous, separate or sequential use a médicament.
In an embodiment, the invention relates to a combination product as defined above, wherein the second therapeutic agent is selected from the group consisting of chemotherapeutic agents, 25 radiotherapy agents, cell therapy agents, immunotherapeutic agents, antibiotics and probiotics.
In an embodiment, the invention relates to a combination product as defined above, wherein said immunotherapeutic agent is selected from the group consisting of therapeutic vaccines, immune checkpoint blockers or activators, in particular of adaptive immune cells (T and B lymphocytes) and antibody-drug conjugales.
In an embodiment, the invention relates to a combination product as defined above, wherein said immune checkpoint blocker or activator of adaptive immune cells (T and B lymphocytes) is selected from the group consisting of anti-PDL1, anti-PD1, anti-SIRPA, anti-CTLA4, antiCD137, anti-CD2, anti-CD28, anti-CD40, anti-HVEM, anti-BTLA, anti-CD160, anti-TIGIT, antiTIM-1/3, anti-LAG-3, anti-2B4, and anti-OX40, anti-CD40 agonist, CD40-L, TLR agonists, anti35 ICOS, ICOS-L and B-cell receptor agonists, in particular selected from the group consisting of anti-PDL1, anti-PD1 and anti-CD137. In a particular embodiment of the invention, the second therapeutic agent is an anti-PDL1 or an anti-PD1 compound, in particular an anti-PD1 compound, and more particularly an anti-PD1 antibody. In a particular embodiment of the invention, the second therapeutic agent is an anti-SIRPa compound, in particular an anti-SIRPa antibody.
In one embodiment, said immunotherapeutic agent is an antibody targeting tumoral antigen, particularly selected from the group consisting of anti-Her2, anti-EGFR, anti-CD20, anti-CD19, 5 anti-CD52.
In an aspect, the invention relates to a combination product as defined above, for simultaneous, separate or sequential use in the treatment of any condition susceptible of being improved or prevented by modifying macrophage polarization to proresolutive macrophages.
In an embodiment, the invention relates to a method of treatment of any condition 10 susceptible of being improved or prevented by modifying macrophage polarization to proresolutive macrophages in a subject in need thereof comprising administering simultaneously, separately or sequentially to said subject an effective amount of a combination product as defined above.
In an embodiment, the invention relates to the use of a combination product as defined 15 above in the manufacture of a médicament for the treatment of any condition susceptible of inducing proresolutive-inflammatory macrophages.
In an aspect, the invention relates to a combination product as defined above, for simultaneous, separate or sequential use in the treatment of a pathology selected from the group consisting of inflammatory diseases, including but not limited to acute inflammatory 20 diseases and chronic inflammatory diseases, inflammatory bowel disease, Crohn’s disease, NASH, scleroderma, asthma, keratoconjunctivitis, periodontal disease, eczema, colitis, in particular ulcerative colitis or spontaneous colitis, cystic fibrosis, diabètes, in particular type I diabètes, peritonitis, psoriasis, carcinoma, in particular mammary carcinoma or colon carcinoma, cancers, metastatic cancers, lung cancer, degenerative disease, infection disease, 25 in particular sepsis, autoimmune diseases or for use in vaccination.
In an embodiment, the invention relates to a method of treatment of a pathology selected from the group of inflammatory diseases, including but not limited to acute inflammatory diseases and chronic inflammatory diseases, inflammatory bowel disease, Crohn’s disease, NASH, scleroderma, asthma, keratoconjunctivitis, periodontal disease, eczema, colitis, in 30 particular ulcerative colitis or spontaneous colitis, cystic fibrosis, diabètes, in particular type I diabètes, peritonitis, psoriasis, carcinoma, in particular mammary carcinoma or colon carcinoma, cancers, metastatic cancers, lung cancer, degenerative disease, infection disease, in particular sepsis, autoimmune diseases of a subject in need thereof comprising administering simultaneously, separately or sequentially to said subject an effective amount of a combination 35 product as defined above.
The invention also relates to a polynucleotide encoding an anti-CMKLR1 compound as defined herein. To this end, the invention also relates to a nucleic acid molécule, or a group of nucleic acid molécules, more particularly an isolated nucleic acid molecule(s) and/or a recombinant a nucleic acid molecule(s), which encode(s) any anti-CMKLR1 compound according to the présent disclosure, more particularly which encode(s) a heavy chain variable domain comprising or consisting of the amino acid residues of sequences set forth in SEQ ID No. 38, SEQ ID No. 39, SEQ ID No. 40 and SEQ ID No. 62; and a light chain variable domain comprising or consisting of the amino acid residues of sequences set forth in SEQ ID No. 49, SEQ ID No. 50, SEQ ID No. 51, SEQ ID No. 52, SEQ ID No. 53, SEQ ID No. 54, SEQ ID No. 55, SEQ ID No. 56, SEQ ID No. 57 and SEQ ID No. 58. In a particular embodiment, the présent invention relates to a nucleic acid molécule, or a group of nucleic acid molécules, more particularly an isolated nucleic acid molecule(s) and/or a recombinant a nucleic acid molecule(s), which encode(s) a heavy chain variable domain of the antibody consists of SEQ ID NO: 91 and the amino acid sequence of the light chain variable domain of the antibody consists of SEQ ID NO: 93.
The nucleic acid molecule(s) may further comprise régulation sequences, like but not limited to enhancers, silencers, promoters, in particular expression promoters, signal peptide, for transcription and expression of the encoded heavy chain variable domain and/or the light chain variable domain.
The invention also relates to a vector comprising the polynucleotide as disclosed herein, or comprising the nucleic acid molecule(s) as disclosed herein. As used herein, a vector is a nucleic acid molécule used as a vehicle to transfer a genetic material into a cell, and in a preferred embodiment allows the expression of a polynucleotide inserted within the vector. The term vector encompasses plasmids, viruses, cosmids and artificial chromosomes. A vector generally comprises an origin of réplication, a multicloning site, and a selectable marker. The vector itself is generally a nucléotide sequence, commonly a DNA sequence, that comprises an insert (transgene) and a larger sequence that serves as the backbone of the vector. Modem vectors may encompass additional features besides the transgene insert and a backbone: promoter, genetic marker, antibiotic résistance, reporter gene, targeting sequence, protein purification tag. Vectors called expression vectors (expression constructs) specifically are for the expression of the transgene in the target cell, and generally hâve control sequences.
In another aspect, the invention relates to a cell, an isolated cell, a host cell, an isolated host cell, or a cell line comprising a vector as defined above. As used herein, these terms related to cells are intended to include any individual cell or cell culture that can be or has been récipient of vectors, exogenous nucleic acid molécules, and polynucleotides encoding the antibody construct of the présent invention; and/or récipients of the antibody construct itself. The introduction of the respective material into the cell can be carried out by way of transformation, transfection and the like. These terms are also intended to include progeny or potential progeny of a single cell. Suitable host cells include prokaryotic or eukaryotic cells, and also include but are not limited to bacteria, yeast cells, fungi cells, plant cells, and animal cells such as insect cells and mammalian cells, e.g., murine, rat, rabbit, macaque or human.
In a particular embodiment of the invention, the cell or cell line is selected from the group consisting of CHO, COS and HEK cells, and produced at least 0.1 mg/ml, in particular at least 1 mg/ml of antibodies, in particular at least 10 mg/ml, more particularly at least 100 mg/ml, when genetically engineered with a vector comprising vectors, exogenous nucleic acid molécules, and 5 polynucleotides encoding the antibody construct of the présent invention; and/or récipients of the antibody construct itself.
The following Figures and Examples are put forth so as to provide those of ordinary skill in the art with a complété disclosure and description of how to make and use the présent invention, and are not intended to limit the scope of what the inventors regard as their invention 10 nor are they intended to represent that the experiments below are ail or the only experiments performed. While the présent invention has been described with référencé to the spécifie embodiments thereof, it should be understood by those skilled in the art that various changes may be made and équivalents may be substituted without departing from the true spirit and scope of the invention. In addition, many modifications may be made to adapt a particular 15 situation, material, composition of matter, process, process step or steps, to the objective, spirit and scope of the présent invention. AH such modifications are intended to be within the scope of the daims appended hereto.
In a particular embodiment, the invention concerns the use of an antibody or antigen binding fragment thereof as defined in any one of the embodiments disclosed herein, for the 20 manufacture of a médicament. In a particular embodiment, the invention concerns the use of an antibody or antigen binding fragment thereof as defined in any one of the embodiments disclosed herein, for the manufacture of a médicament useful for treating a condition wherein inflammation is involved. In a particular embodiment, the invention concerns the use of an antibody or antigen binding fragment thereof as defined in any one of the embodiments 25 disclosed herein, for the manufacture of a médicament useful for préventive or the therapeutic treatment of:
- an inflammatory disease, in particular acute inflammatory diseases, chronic inflammatory diseases such as chronic inflammatory pulmonary diseases (e.g. asthma) keratoconjunctivitis, periodontal disease, eczema, inflammatory bowel 30 disease, in particular Crohn’s disease or colitis, in particular ulcerative colitis or spontaneous colitis, cystic fibrosis, NASH (Nonalcoholic steatohepatitis), scleroderma, anti-neutrophil cytoplasm antibodies-related disease ANCA associated disease, in particular wherein, as a resuit of the administration of the treatment, the resolution of inflammation is enhanced;
- an autoimmune disease such as diabètes, in particular type I diabètes, psoriasis, lupus, rheumatoid arthritis, multiple sclerosis, Sjôgren’s syndrome, celiac disease, vasculitis, myasthenia gravis, or an infection disease such as sepsis, peritonitis, degenerative diseases, wound healing disorders, severe viral indications with severe inflammatory conditions, such as coronavirus (e.g.COVID-19), or dry eye syndrome, in particular wherein, as a resuit of the administration of the treatment, the resolution of inflammation is enhanced;
- a cancer, in particular metastatic cancers, solid or liquid cancers such as carcinoma, more particularly hepatocarcinoma, in particular mammary carcinoma or colon carcinoma, colorectal cancer or lung cancer or mesothelioma or myeloid cancer such as leukemia, in particular a cancer wherein cancer cells express CMKLR1 or where the microenvironment of the tumor is invaded by cells expressing or overexpressing CMKLR1, in particular wherein, as a resuit of the administration of the treatment, the resolution of inflammation is enhanced;
- NASH (Nonalcoholic steatohepatitis), scleroderma, cystic fibrosis or anti-neutrophil cytoplasm antibodies-related disease (ANCA).
FIGURE LEGENDS
Figure 1. Effect of the anti-CMKLR1 variants 1G1, 2G1, 3G1 and 4G1 chimeric antibodies on the DCs maturation and différentiation. Mice dendritic cells were incubated during maturation phase (24h or 48h) followed by a différentiation phase with excipient or RvE1 or antiCMKLR1 antibodies variants (mutations on positions 1 and 2 of SEQ ID No. 8, corresponding to the VH-CDR3: 1G1 (LL), 2G1 (Ll), 3G1 (IL) or 4G1 (II) or isotype Controls (hlgG1 or mlgG)). Cells were then stained for FACS analysis with cell marker antibodies: A. CD80-PE; B. CD86FITC; C. CD103-PerCPCy5.5; D. l/Ab-APC. Mean of Fluorescence was determined in each condition. E and F represent the viability of the cells measured by FACS using LIVE/DEAD® kit from Life Technologies in each condition after 24 or 48 hours of maturation respectively.
Figure 2. Effect of an anti-CMKLR1 antibody on a mice acute inflammatory colitis model induced by DSS. Mice were injected after 6 days of DSS induction with isotype control hlgG1 (10pg per mouse) (x), RvE1 (1pg per mouse) daily (·), or 2G1 antibody (10pg per mouse) three times ( ) for 5 days. Wild type mice, not treated, are represented by an ▼. A. Animal weight loss. B. Animal stool score C. Colon length. D. Resolution index.
Figure 3. Effect of an anti-CMKLR1 antibody on a mice acute inflammatory colitis model induced by TNBS. Mice received 200 yL of the haptenating agent TNBS at 5% in 50% éthanol on day 0 and then were injected with isotype control hlgG1 (10pg per mouse) (x), RvE1 (1pg per mouse) daily (·), or 2G1 antibody (10pg per mouse) three times ( ) for 5 days, or nontreated (wild type animais) (A). Mice were sacrificed colon length was measured in each condition.
Figure 4. Effect of an anti-CMKLR1 antibody on a IL10 KO mice chronic inflammatory colitis model. Mice KO for IL10 develop a spontaneous inflammatory colitis. They were treated with an Anti-CMKLR1 antibody (2G1) ( ) or isotype control (hlgG1) (x) intra-peritoneally (25pg/injection, 3 times a week). A. Animal weight loss during and after treatment. B. Animal score stool.
Figure 5. Effect of an anti-CMKLR1 antibody on a mice typel non-obese diabètes model.
Mice develop spontaneous diabètes. When glycaemia was between 180 and 234 mg/dL, they 5 were treated with anti-CMKLR1 antibody ( in A and B, in C) or isotype control antibody (x in
A and B; in C) intraperitoneally at 20pg/injection three times a week for 2 weeks. A. Percentage of survival, B. individual représentation of blood glucose concentration in mg/dL. C. pooled représentation of blood glucose concentration in mg/dL.
Figure 6. Effect of anti-CMKLR1 agonist on an autoimmune disease such as mice psoriasis model. Aldara treated mice for 4 to 6 consecutive days were injected intraperitoneally with: 2G1 (·) or isotype control antibody (x). A. thicknesses and B weight.
Figure 7. Effect of an anti-CMKLR1 antibody on a mice peritonitis model. Préventive injection of anti-CMKLR1 was performed before Zymosan A injection (1mg per mouse in 1mL).: RvE1 (1 pg per mouse) (·), 2G1 antibody (1 Opg per mouse) ( ) or isotype control antibody (x).
A. PMN numbered during the first 50 hours after Zymosan A injection. B. Macrophages numbered during the first 50 hours after Zymosan A injection. C. Resolution index.
Figure 8. Effect of an anti-CMKLR1 antibody on a 4T1 breast tumor model. Mice were inoculated with 4T1 cells (0,25 million) in the mammary gland. Then the anti- CMKLR1 antibody (2G1) (A. B. ·) or an anti-41BB antibody (3H3) (·) or both antibodies (A) were injected twice at day 4 and day 7 (10pg/injection) or a control antibody (lgG1 isotype antibody clone 3G8) (x A. and B.) was injected three time a week for three weeks. A. The tumor area was measured 8 days after tumor injection and then every 2 days. B. Tumor lung metastasis was measured by Bioluminescence imaging (BLI) in animais treated with isotype control and anti-CMKLR1 antibody (n=4).
Figure 9. Effect of an anti-CMKLR1 antibody on 2 different colon carcinoma mice models. Two mice models were studied, and animais received isotype control antibody (3G8) (x) or antiCMKLR1 (2G1) ( ) at 20pg/injection intraperitoneally for 3 weeks. A-C. Results in the CT26 colon carcinoma model comparing single treatment with p84 (A) and 2G1 (B) with combined therapy with both antibodies (C). D: Results in the MC38 colon carcinoma model.
Figure 10. Expression of CMKLR1 on Ulcerative Colitis (UC) or Crohn’s Disease patient biopsies before and after anti-TNFa treatment. x represents Controls; represents CMKLR1 expression in patient responding to corticosteroids treatment and/or immunosuppression treatment before Infliximab treatment; represents CMKLR1 expression in patient nonresponding to corticosteroids treatment and/or immunosuppression treatment before Infliximab treatment; Δ represents CMKLR1 expression in patient responding to corticosteroids treatment and/or immunosuppression treatment after Infliximab treatment; A represents CMKLR1 expression in patient non-responding to corticosteroids treatment and/or immunosuppression treatment after Infliximab treatment. A. CMKLR1 transcript expression in Ulcerative colitis patients before and after Infliximab treatment. B. CMKLR1 transcript expression in Crohn’s Disease patients before and after Infliximab treatment in inflamed colon biopsies.
Figure 11. Expression of CMKLR1 on UC patient biopsies before and after anti α4β7 5 (VDZ) treatment. A. Represents the CMKLR1 (CMKLR1) transcript expression in Ulcerative colitis patients before and after Vedolizumab treatment in inflamed colon biopsies. R corresponds to patient responsive to VDZ treatment, NR corresponds to patient non-responsive to VDZ treatment.
Figure 12. Binding analysis of the anti-CMKLR1 antibody on a CMKLR1 peptide by ELISA.
The binding of the 2G1 antibody ( ) on the CMKLR1 EL3 loop (SEQ ID No: 18) was compared to the isotype control antibody (3G8) (x) by measuring the QD at 450nm by ELISA.
Figure 13. Study of CMKLR1 expression on different cell lines by FACS and western blot.
A. The protein expression at cell surface of CMKLR1 was determined using the 2G1 antibody at different concentration (ng/ml) on two human different T cell lines Thp1 and U937. B. the 15 CMKLR1 protein expression was tested by western blot on T cell lines (Thp1 and U937), fibroblast cell line MRC5, NK cell lines NKL and négative and transduced CHO cells for . CMKLR1.
Figure 14. Expression of CMKLR1 on mice myeloid cells by FACS. After différentiation, mice myeloid lineage cells were analyzed for their CMKLR1 expression at cell surface. A. 20 expression on macrophage monocytes (MO). B and C. expression on macrophages (proinflammatory mMIand pro-resolution mM2 macrophages). D and E. expression on Dendritic cells (mDC and iDC).
Figure 15. Expression of CMKLR1 on human monocytes and mice bone marrow cells stimulated with pro-inflammatory stimuli.
After 16 or 48 hours of stimulation of the cells with LPS, TNFa or IL6, expression of the CMKLR1 (ChemR23) was measured by FACS. A. Results on human blood monocytes, B. and C. Results on myeloid and neutrophil cells from mice bone marrow.
Figure 16. Study of the myeloid cell activation markers after CMKLR1 pathway activation.
Dendritic cells incubated in excipient, RvE1, 2G1 or isotype control (hlgG1) were then stained 30 for FACS analysis with marker antibodies: A. CD80-PE. B. CD86-FITC. C. CD103-PerCPCy5.5.
D. CD40-PeCy7. E. I/Ab-APC. Mean of Fluorescence was determined in each condition.
Figure 17. Study of the CMKLR1 pathway activation: Akt and Erk phosphorylation. Western blot analysis of the ERK and AKT activation pathway after 5, 10 and 30 minutes of mice pro-inflammatory (M1) macrophages incubated with 2G1 or RvE1. The Phosphorylated 35 protein Akt or Erk were assessed using P-Akt antibody or P-Erk antibody (p44/42). A. Erk and
Akt activation with RvE1. B. Erk and Akt activation with 2G1.
Figure 18. Compétition study on chemerin-CMLKRI interaction with anti-CMKLR1 antibodies.
A. Inhibition of the cAMP by Chemerin from two different providers were tested from DiscoverX (·) or R&D System (A) or combined with anti-CMKLR1 antibody (2G1) alone ( 0) or combined with chemerin from DiscoverX ( ).
B. beta Arrestin activation in presence of anti-CMKLR1 antibody at different concentrations 5 from 1 μΜ to 1 nM and Chemerin 2nM (0) or 6nM (·)
Figure 19. Effect of an anti-CMKLR1 antibody in the CD45Rbhi9h T-cell transfer chronic colitis mouse model. A. Weight variation of treated animais was followed up to sixty days. Animais were treated with isotype control hlgG1 (x) or anti-CMKLR1 antibody (). B. Histological staining of colon tissue in the mice treated with the anti-CMKLR1 (right) compared 10 to control (left). C. Anatomie pathology scores used to calculate the severity of the pathology and the inflammation (inflammation score, vasculutis score, colon thickness and fibrotic colon wall). D. CD3 and Ly6G infiltration.
Figure 20. Effect of an anti-CMKLR1 antibody on a Hepatocarcinoma mice model (HCC model). Anti-tumor effect of anti-CMKLR1 antibody (2G1, 0.8mg/kg) i.p. administration three 15 times a week for 2 weeks in combination (A) or not (·) with two injections on day 4 and 8 of anti-PD1 mAb (RMP1-14 clone, 8mg/kg) or with injections (twice a week) of anti-PD-1 antibody alone (Δ). Mice hâve been treated during 2 weeks in an orthotropic model of murine hepatoma (2.5.10Λ6 of Hepa 1.6 cells injected through the portai vein on day 0). Isotype control antibody was used at 0,8 mg/kg three times a week for 2 weeks. Mice response were considered partial 20 (PR) when mice survive few days to 1 month after stop of treatment or complété (CR) when mice survive over 1 month or cured when they survive three times longer than the time necessary to ail control mice dye.
Figure 21. Production of anti-CMKLR1 antibody in different cell lines.
CDR of 2G1 heavy chain were grafted in three human germlines framework, named IGHV325 23*04, IGHV1-46*01 and IGHV7-4-1 (IMGT nomenclature). CDR of 2G1 light chain were grafted in three human germlines framework, named IGKV1-13*02, IGKV6-21*01 and IGKV311*01 (IMGT nomenclature). Each sequence was fused to constant fragment of human immunoglobulin and co-transfected in mammalian cells to produce humanized antibody in COS and CHO cells. Production was assessed in the supernatant. VH WT and VL WT correspond 30 respectively to the heavy and light chains of 2G1 antibody.
Figure 22. Production of humanized antibody derived from 2G1.
Concentration and yield of production of different combinations of heavy variable chain and light variable chain domains in CHO cells. VH WT and VL WT corresponds to the variable domains of the 2G1 antibody. The germline is issued from humanized version of the variable domains of 35 2G1, and are disclosed here below in the examples.
Figure 23. Binding récognition of C7 peptide by humanized anti-CMKLR1 derived from 2G1. Binding of C7biot in the supernatant of CHO cells transfected with different combinations of heavy and light chains (VHWT+VLWT: combination of SEQ ID No. 37 and SEQ ID No. 49;
HCLC: combination of SEQ ID No. 42 and SEQ ID No.52; HDLC: combination of SEQ ID No. 43 and SEQ ID No.52; HCLD: combination of SEQ ID No. 42 and SEQ ID No.53; HDLD: combination of SEQ ID No. 43 and SEQ ID No.53).
Figure 24. ED50 of anti-CMKLR1 derived from 2G1 antibody. 2G1wt: HALA: combination of SEQ ID No. 41 and SEQ ID No. 50; combination of SEQ ID No. 37 and SEQ ID No. 49; HCLC: combination of SEQ ID No. 42 and SEQ ID No.52; HDLC: combination of SEQ ID No. 43 and SEQ ID No.52; HCLD: combination of SEQ ID No. 42 and SEQ ID No.53; HDLD: combination of SEQ ID No. 43 and SEQ ID No.53.
Figure 25. Inhibition of CCR7 expression on M1 macrophages cells in vitro with antiChemR23 antibodies coated. 2G1 and ail humanized 2G1 variants (HALA, HCLC, HCLD, HDLC and HDLD) were immobilized on plate. Isotype control were added as Controls. Two isotypes which prevent FcRy binding, Le., 2G1-N297A (2G1wt mutated in N297A to reduce FcyR binding), and 2G4 (wt with isotype lgG4mutated in S228P to stabilise hinge région) were 15 also added. Pro-inflammatory macrophages M1 were added on coated plate for 48h, and CCR7 expression at the surface of the macrophages was measured by flow cytometry.
Figure 26 - Neutrophil apoptosis. A) Survival/Mortality of neutrophils B) Caspase-3 expression C) ROS production.
Neutrophils were isolated from blood of healthy volunteers and cultured for 24h (Mortality 20 analysis), or 4h, 6h, 11h (Caspase-3 assay), or 5h (ROS assay) on coated Iso Ctrl (cross), chimeric anti-ChemR23 2G1 (square) or different humanized versions of the 2G1 (diamonds). Mortality of PMN was analyzed by incubating PMN with spécifie markers of the mortality and viability and then counted by picture analysis. Caspase-3 is revealed by western blot and intensity of signais was determined with a software. ROS production was revealed with a 25 spécifie marker and analyzed on pictures.
Figure 27 - in vivo neutrophils apoptosis - A) Experimental proceedings - B) ChemR23 expression C) neutrophils frequency in exudates D) macrophages frequency in exudates E) neutrophils mortality F) Ratio dead/living neutrophils.
Stérile air was injected two times at d3 and d6 and inflammation was initiated with the injection 30 of carrageenan. Exudates were collected at different times and stained for flow cytometry analysis.
Figure 28- Neutrophils transmigration ratio- A) transmigration ratio of PMNs in healthy patients - B) Ratio PMNs in inflamed patients suffering from ANCA
Endothélial cells were coated and +/- activated with 100U/mL of TNFa ovemight. Then PMN 35 were added with or without TNFa at 100U/mL and Ab for two hours. The transmigrated PMN were collected and analyzed by flow cytometry.
Figure 29 - CD62L expression. PMN from healthy volunteers were incubated in culture medium with coated Ab at 10pg/mL for different times and collected for CD62L staining analyzed by flow cytometry (left panel). The soluble form of the CD62L released by shedding is detected by ELISA in the supernatant of PMN incubated with coated Ab (right panel).
Figure 30 - Mesothelioma model Survival
AK-7 cells (3M) were injected in the pleural cavity and mice received either Iso Ctrl or 2G1 three times a week for 3 weeks starting at d4 at 1mg/kg.
Figure 31 - CRC model A) Tumor cell inoculated model of CRC: tumor development and survival B) Chemically and inflammation induced CRC.
Tumor inoculation was performed with 0.5M of MC38 CRC cell line subcutaneously. Mice were injected three times a week with 1mg/kg of 2G1 or Ctrl Ab for 3 weeks starting at d4 after tumor induction. Cyclophosphamide was injected I.P. once at 100mg/kg. Tumor development was assessed three times a week and survival curves were established when mice developed a tumor > 1000mm3.
In the AOM-DSS model, mice received an IP injection of azoxymethane at 7,5mg/kg and 5 days later, three cycles of 5 days-DSS and 14 days-water started. Treatment or placebo were administered after the 1st cycle and kept going until the end two times a week. Mice were weighted and stool analyzed two times a week. Colons and tumors were measured and numbered 80 days after the Chemical injection.
Figure 32 - autoimmune encephalomyelitis experimental model. - A) Weight variation over time B) illness score
Lésions in the central nervous System were induced by injection of the immunogenic MOG peptide combined with adjuvants. Treatment (2G1) or Isotype control were administered at 1mg/kg when animais had a clinical score equal to 2 meaning the central nervous System is 25 already affected by T cell activity, until the end of the experiment.
Figure 33- Binding of purified antibodies on human ChemR23 peptide by ELISA assay (A), with ED50 concentration (ng/ml) (B). For activity ELISA assay, donkey anti-human IgG, Fc spécifie (Jackson Immunoresearch; USA; reference 709-005-098) was immobilized on plastic at 1.3pg/ml in borate buffer (pH9) and purified antibody was added to measure binding in 30 BSA1% buffer, compared to wild-type 2G1. After incubation and washing, biotinylated antigenspecific peptide (Biot-C7 peptide) then, peroxidase-streptavidin (Jackson Immunoresearch; USA; reference 016-030-084) was added and revealed by conventional methods.
Figure 34- A. Binding of purified antibodies incubated 7 days at 4°C or 37°C on human ChemR23 ELISA assay. B. SEC profile by gel filtration chromatography of purified 35 antibodies incubated 7 days at 37°C. Each purified humanized anti-ChemR23 antibody (HALA, HDLD, HD-LDT52S, HEF-LDT52S, HEF-LEF) were incubated for 7 days at 4°C or
37°C. After 7 days, the binding of purified antibodies was analyzed by ELISA assay and the aggregate formation was analyzed by gel filtration (Superdex 200 10/300GL, GeHealthcare).
Figure 35 - Inhibition of CCR7 expression on NI1 macrophages cells in vitro with antiChemR23 antibody coated. The humanized 2G1 variant HEF-LD-T52S was immobilized on 5 plate. Isotype control were added as contrais. Pro-inflammatory macrophages M1 were added on coated plate, and CCR7 expression at the surface of the macrophages was measured by flow cytometry.
Figure 36- Increase of dead PMN neutrophils in vitro with anti-ChemR23 antibodies coated. PMN from healthy volunteers were incubated in culture medium with coated HEF10 LDT52S, HEF-LEF and HDLD antibody variants at 10pg/mL for 24h and stained either with a dead/viability kit (LIVE/DEAD (Invitrogen)). The percentages of positive cells were obtained by analyzing the pictures with Fiji software. Isotype control was added as control. A mutated version of HEF-LDT52S antibody which does not bind to Fc receptors (FcR) (HEF-LDT52S N297A) were also added.
EXAMPLES
Production and Sélection of anti-CMKLR1 antibody
Several antibodies having different CDR sequences within their heavy and light chain variable domains hâve been synthetized. The distinct antibodies were tested for their ability to induce 20 maturation and différentiation of dendritic cells towards a pro-inflammatory pathway or an antiinflammatory pathway. They selected antibody 2G1 (SEQ ID No: 37 and SEQ ID No: 49) to assess its properties in resolving inflammatory status of at least influencing said status in résolution phase, and the génération of 3 germlines for assessing the production of antibodies in vitro.
As shown in Fig. 1; the 2G1 and 1G1 (another synthetized antibody) antibodies were able to inhibit DCs activation and/or maturation in a stronger manner than other synthetized antibodies (3G1 and 4G1) cells towards a pro-inflammatory pathway since level of détection of DCs expressing CD103 and lAb treated with 2G1 was lower than DCs cells treated with C7 antibody (the method used in this assay is described in point 10.2 of the examples). As shown in Fig. 1E 30 and 1F, the viability of cells is enhanced after treatment with 1G1 or 2G1 antibodies as compared to cells treated with others antibodies, including C7, or Resolvin E1.
The 2G1 was humanized using in silico CDR grafting method, a method of humanization. The resulting humanized sequences from the CDR and FR régions, as well as from the variable heavy chain and light chain are described in the following tables.
Germline Amino acid Sequence _________________SEQIDNo.
VHJGHV3-23*04 | EVQLVESGGGLVQPGGSLRLSCAASGFTFSSYGMSWVRQAPGKGLELV ATINRYGGSTYYPDSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCP RLIYYGN EGDSWGQGTLVTVSS | 41 |
VH_IGHV1-46*O1 | QVQLVQSGAEVKKPGASVKVSCKASGFTFSSYGMSWVRQAPGQGLE LVATINRYGGSTYYPDSFKGRVTITRDNSTSTLYMELSSLRSEDTAVYYCP RLIYYGN EGDSWGQGTLVTVSS | 85 |
VH_IGHV7-4-l*02 | QVQLVQSGSELKKPGASVKVSCKASGFTFSSYGMSWVRQAPGQGLEL VATINRYGGSTYYPDSFKGRFVISRDNSVSTLYLQISSLKAEDTAVYYCPR LIYYGN EGDSWGQGTLVTVSS | 86 |
Table 1. Heavy chain variable domain qermlines
Germline | Amino acid Sequence | SEQ ID No. |
VLJGKVl-13*02 | AIQLTQSPSSLSASVGDRVTITCSASSSVSFMHWYQQKPGKAPKRWIY DTTKLTSGVPSRFSGSGSGTDYTLTISSLQPEDFATYYCQQWNSKPPLTF GGGTKVEIK | 50 |
VL_IGKV6-21*01 | EIVLTQSPDFQSVTPKEKVTITCSASSSVSFMHWYQQKPDQSPKRWIY DTTKLTSGVPSRFSGSGSGTDYTLTINSLEAEDAATYYCQQWNSKPPLTF GGGTKVEIK | 87 |
VL_IGKV3-ll*01 | EIVLTQSPATLSLSPGERATLSCSASSSVSFMHWYQQKPGQAPRRWIY DTTKLTSGIPARFSGSGSGTDYTLTISSLEPEDFAVYYCQQWNSKPPLTF GGGTKVEIK | 88 |
Table 2. Light chain variable domain qermlines
Examples of therapeutic efficacy of anti-CMKLR1 antibody treatment on preclinical models of autoimmune and inflammatory diseases
EXAMPLE 1. Induction of colitis by DSS
Colitis was induced in 8-10 weeks-old-C57BI/6 male mice by adding 2% (wt/vol) of DSS to the stérile drinking ad libitum water for 6 days. Treatments were injected intra-peritoneally: Isotype 10 contrai hlgG1 (10pg per mouse), RvE1 (1pg per mouse) daily, or 2G1 antibody (10pg per mouse) three times for 5 days. Colitis follow-up consisting of body weight and stool score (0: normal stool; 4: blood in stool) parameters were performed daily. When mice were euthanized, colon length representing the pathology severity was measured. Resolution index was determined in the different conditions as described in Bannenberg et al., 2005.
RESULTS: The DSS animal model presented on Figure 2 is an acute inflammatory model. Figure 1 shows a better overall State of the animais treated with the anti-CMKLR1 antibody than States of animais receiving the contrai antibody or the resolvin RvE1. The anti-CMKLR1 treated mice lost significantly less weight (Fig. 2A) and the score stool (Fig. 2B) was significantly better.
54 ..
Regarding the colon length and resolution index (Figure 2C and 2D), the animais receiving the anti-CMKLR1 or RvE1 presented similar results.
EXAMPLE 2. Induction of colitis byTNBS
Colitis was induced in 8-10 weeks-old-C57BI/6 male mice by intrarectal injection of 200 pL of 5 the haptenating agent TNBS at 5% in 50% éthanol on day 0. Treatments were injected intraperitoneally; RvE1 (1pg per mouse) daily for three days, or 2G1 antibody (10pg per mouse) twice for 3 days. Colitis follow-up consisting of body weight and stool score (0: normal stool; 4: blood in stool) parameters were performed daily (data not represented). When mice are euthanized, colon length representing the pathology severity was measured.
RESULTS: Colitis induced by TNBS is another model of acute inflammation. Figure 3 shows that animais treated with anti-CMKLR1 or RvE1 hâve a colon length which is the same as normal animal (wt). However, those treated with the isotype contrai presented a shorten colon length. These results confirmed the therapeutic potential of an anti-CMKLR1 antibody acting like RvE1 on acute inflammatory mice models.
EXAMPLE 3. IL10-KO model - Spontaneous colitis model
IL-10KO mice develop a spontaneous colitis from 20 weeks of âge mostly due to the absence of regulatory T cells function through IL-10 sécrétion in the intestine. IL-10KO mice were followedup three times a week from 18-week old for their weight loss and stool consistency which are clinical hallmarks of this pathology. Anti-CMKLR1 antibody (2G1) or isotype contrai (hlgG1) 20 were injected intra-peritoneally when the weight loss was superior to 5% and the stool score was superior or equal to 1 for 2 weeks (25pg/injection, 3 times a week).
RESULTS: A chronic inflammatory model was used to study the efficacy of anti-CMKLR1 antibody treatment. Figure 4 shows the analysis of the percentage of weight loss (Fig. 4A) and the score stool (Fig. 4B) when animais were treated with isotype contrai or anti-CMKLR1 25 antibody. Results show that animais lost less weight when treated with the anti-CMKLR1 antibody and had a better score stool than those receiving the isotype contrai. Anti-CMKLR1 antibody seems hence to présent a therapeutic potential on chronic inflammatory diseases.
EXAMPLE 4. Preclinical model of Type 1 diabètes: the mice NOD model weeks-old NOD female mice were obtained from Charles River laboratory. These mice 30 develop a spontaneous type 1 diabètes at âge between 12 to 20 weeks. The diabètes initiation can be measured by the high glycaemia. When the glycaemia was between 180 and 234 mg/dL, anti-CMKLR1 and isotype contrai were given intra-peritoneally at 20pg/injection three times a week for 2 weeks. Mice were euthanized when the glycaemia was superior to 600mg/dL corresponding to an irréversible diabètes.
RESULTS: this type 1 diabètes model is considered as a mice autoimmune disease model as well. Results presented Figure 5 A-C show that animais treated with an anti-CMKLR1 antibody presented a better survival percentage and an almost normal glycaemia as indicated by measurement of the blood glucose concentration. This recovery seems to be stable over time and indicate a potential total recovery of animais that were previously ill. Anti-CMKLR1 antibody restored a tolerated state against glucose.
EXAMPLE 5. Imiquimod-induced psoriasis-like skin inflammation
Aldara® cream which is known to induce psoriasis in mice was used on male C57BI/6 mice (85 10-week old). Mice received a daily topical dose of Aldara. Treatments (anti-CMKLR1 agonist or contrai compound) were injected intra-peritoneally:
RESULTS: Anti-CMKLR1 agonist (2G1) reduces the thickness of the skin (Fig. 6A) after Aldara administration (see for example on day 15), while the weight of the animais is not impacted by the administration of the agonist (Fig. 6B).These résulte suggest an application for agonist anti10 CMKLR1 compound therapy on psoriasis mice model, illustrative of an autoimmune disease.
EXAMPLE 6. Therapeutic efficacy of anti-CMKLR1 antibody on preclinical model of sepsis: mice peritonitis model
Common peritonitis is induced by intraperitoneal injection of Zymosan A® (1mg per mouse in 1mL). Préventive injection of anti-CMKLR1 was performed 5 minutes before Zymosan A 15 injection: RvE1 (1pg per mouse), 2G1 antibody (10pg per mouse). Murine peritoneal polymorphonuclear neutrophil (PMN) and macrophages were collected at 2-4-8-16-24 and 48h after Zymosan A injection and numbered by flow cytometry analysis to determinate the resolution index (Bannenberg et al., 2005).
RESULTS: Results presented on Figure 7 on PMNs (7A) and Macrophages (7B) numbers and 20 on resolution index (70) show that animais treated with RvE1 or an anti-CMKLR1 antibody presented identical results and a slightly less PMNs and macrophages cells along with a better resolution index compared to the isotype contrai. In sepsis, even a slight différence could be of importance for therapy. Hence, these results are very positive for a potential application of an anti-CMKLR1 antibody in sepsis.
EXAMPLE 7. Therapeutic efficacy of anti-CMKLR1 antibody treatment on preclinical models of cancers:
Example 7.1. Effect of an anti-CMKLR1 antibody on the growth of a primary tumor and its lung metastasis development in an orthotopic mammary carcinoma model.
Mice were anesthetized with 3% of isoflurane. Mice were shaved on the abdomen and 4T1 cells 30 (0,25 millions) were injected in the mammary gland with an insulinic syringe (30 Gauges) in
50pL of PBS. The anti-CMKLR1 antibody (2G1) or an anti-41BB antibody (3H3) or both antibodies were injected twice at day 4 and day 7 (1 Opg/injection); a contrai antibody was injected three times a week for three weeks intraperitoneally in PBS (100pg/injection). In a second study to measure the lung metastasis following mammary carcinoma development, 35 animais were treated with anti-CMKLR1 antibody at 0.8mg/kg or contrai antibody (100pg/injection) three times a week for three weeks.
RESULTS: As shown in Figure 8A, animais treated by a single compound (2G1 or 3H3) did not show any improvement in the tumor growth compared to the animais receiving isotype contrai 56 .
antibody. However, the animais treated with the combination of anti-CMKLR1 antibody and anti41BB antibody show significant (p<0.01) réduction in the growth of the tumor in the mammary carcinoma model. Since this model of mammary carcinoma is a pretty aggressive model, results are considered positive. As shown on Figure 8B, which illustrâtes the effects of an anti5 CMKLR1 compound on the lung metastasis by bioluminescence imaging, it can be seen than the anti-CMKLR1 treatment reduces the lung metastasis as compared to animais treated with the control antibody. The analysis of the lymph node metastasis shows that no animais treated with the anti-CMKLR1 compound has metastasis while two animais in the control hâve metastasis (data not shown). Those results indicate that anti-CMLKR1 antibody with agonist activity mimicking RvE1 has an anti-metastatic effect. In this model, the antibody of the invention does not présent any significant efficacy on primary tumor development. However, results show an improvement when animais are treated by a combination of anti-CMKLR1 and anti-41 BB antibodies.
Example 7.2. Therapeutic effect on tumor growth in a colon carcinoma model
8-week old C57bl/6J male mice were anesthetized with 3% of isoflurane. Mice were shaved on the flank and MC38 cells (0,5.107^ cells/mouse) cell lines were injected subcutaneously with an insulinic syringe (30 Gauges) in 50pL of PBS. Another model was used, in which 8-week old Balb/c male mice were anesthetized with 3% of isoflurane. Mice were shaved on the flank and CT26 cells (1.10*6 cells/mouse) were injected subcutaneously with an insulinic syringe (30
Gauges) in 50pL of PBS.
The agonistic anti-CMKLR1 antibody (2G1) or an anti-SIRPa antibody (p84- anti-mouse SIRPa from Merck Millipore) (SIRPa is a new checkpoint inhibitor) were injected once a week (20pg/injection) intraperitoneally for 3 weeks starting at d4 after tumor inoculation alone or combined.
RESULTS: As shown in Figure 9 A-C, in the CT26 carcinoma model, the anti-CMKLR1 antibody on its own (Fig. 9B) did not demonstrate a clinical effect on the tumor development compared to the control group nor did the anti-SIRPa alone (Fig. 9A). However, and surprisingly, the combination of both compounds enabled an inhibition of the tumor growth in a timely manner (Fig. 9C). In another mice colon carcinoma model presented on Figure 9D, the anti-CMKLR1 did show an efficacy in the inhibition of the tumor growth compared to the isotype control. Ail together, these results for two different colon carcinoma models indicate that an agonist anti-CMKLR1 antibody can prevent tumor development on its own, or in combination with another therapeutic agent.
EXAMPLE 8. Meta-analysis of the CMKLR1 expression on UC or CD human patient biopsies 35 treated with an anti-TNFa or anti-a4p7 antibody thérapies.
Signaling networks perpetuating chronic gastrointestinal inflammation in Crohn’s disease (CD) and ulcerative colitis (UC), the two main forms of inflammatory bowel diseases (IBD), remain unclear in human. According to an analysis of nearly 500 patients with IBD and 100 Controls, inventors report here that CMKLR1 transcript are accumulated in inflamed colon tissues of severe IBD patients who were not responding to immunosuppressive/corticosteroids and immunothérapies such as anti-TNFa (infliximab) or anti-a4p7 integrin (vedolizumab) thérapies. The inventors first analyzed the mucosal CMKLR1 transcript expression by performing a meta5 analysis of publicly available transcriptional datasets of three cohorts of UC patients (GSE16879(Arijs et al., 2009a) and GSE12251(Arijs et al., 2009b), and GSE73661 with colon mucosa biopsies performed before anti-TNF treatment (within a week) in patients refractory to corticosteroids and/or immunosuppression. In these three cohorts, anti-TNF response was defined as histological healing analyzed 4-6 weeks after their first anti-TNF infusion (altogether:
n=18 non-IBD Controls, n=41 UC non-responders and n=28 UC responders).
RESULTS: The analysis showed that CMKLR1 transcript expression is significantly increased in colon biopsies of primary UC non-responder patients before and after treatment with anti-TNF therapy as compared to non-IBD contrais or patients with UC before anti-TNF and who will respond to anti-TNF therapy (Figure 10A). Mucosal CMKLR1 expression is also significantly 15 increased in colon or ileal biopsies of Crohn’s Disease patients (n=24 non-IBD contrais, n=17
CD non-responders and n=20 CD responders; GSE16879(Arijs et al., 2009a)) before and after anti-TNF therapy in patients who will not respond to anti-TNF as compared to non-IBD contrais or future responders (Figure 10B). Finally, colon mucosa gene expression analysis in a cohort of UC patients (GSE7366146) treated with anti-a4p7 (vedolizumab) therapy confirmed also that
CMKLR1 expression is also significantly increased in non-responders before and after treatment with Vedolizumab (Figure 11).
Altogether, the meta-analysis shows that CMKLR1 is over-expressed in inflamed tissues of IBD patients, in particular in patients non-responding to current immunosuppressive or immunothérapies even before initiation of the treatment. Our meta-analysis provide evidence that the CMKLR1 expression in the colon, or rather iléon for CD, from UC or CD patients who are treatment refractory may in contrast qualify these patients as being responsive to an agonist anti-CMKLR1 antibody treatment such as an antibody of the invention.
EXAMPLE 9. CMKLR1 expression and antibody binding study
- ELISA binding CMKLR1 (Figure 12)
CMKLR1 peptide (273NH2-PYHTLNLLELHHTAMPGSVFSLGLPLATALAIA-COOH305) (SEQ ID No: 60) (5pg/ml) was coated in borate buffer overnight. Saturation was performed with PBSTween 0,1%-Gelatin 0,25% for 2 hours at 37°C. Then, 2G1 or hlgG1 antibodies were added at different concentrations for 2 hours at 37°C. Then peroxidase-conjugated secondary antibody (0,8pg/ml) was added for 1 hour at 37°C and revealed by a TMB substrate. The colorimétrie 35 reaction was read with TECAN.
- CMKLR1 expression by FACS (Figure 13A)
Cells were resuspended in PBS-FBS-EDTA and incubated with Fc block (1/50) for 30 minutes on ice. Staining on monocytes, macrophages and dendritic cells were performed using A488labeled 2G1 (5pg) or A488-labeled hlgG1 (5pg).
- Western blot analysis CMKLR1 (Figure 13B)
After protein migration and transfer as described previously, 2G1 antibody (10pg/membrane) was incubated ovemight at 4°C and revealed with a peroxidase-conjugated secondary antibody (1:2000). The CMKLR1 expression was then detected by using Chemiluminescence and Image Reader. Western blot Images were quantified by Multi Gauge software.
RESULTS: the results illustrated on Figure 12 confirm that the anti-CMKLR1 antibody clone 10 2G1 is able to bind the polypeptide forming the loop EL3 of CMKLR1. Expression of CMKLR1 on different cell Unes assessed using 2G1 antibody by FACS and Western blot showed that human Tumor T cell Unes Trp1 and U937 express CMKLR1 as well as transduced CMKLR1 CHO cells and human lung fibroblast cell line MRC5 and human NK cell line NKL (Fig. 13).
EXAMPLE 10. Study of the CMKLR1 expression on myeloid lineage
Example 10.1 .Human monocytes différentiation and polarization
Monocytes were collected from PBMC of buffy coat of healthy volunteers and isolated by magnetic séparation or by élutriation. Then, monocytes were cultured with different cocktails of cytokines to generate differentiated unpolarized macrophages or polarized macrophages. This protocol allowed to generate polarized differentiated macrophages in order to hâve pro20 inflammatory (M1) or pro-resolution -(M2) of inflammation macrophages in different wells.
Monocytes were plated at 0,5.106 cells/mL in complété RPMI (RPMI with 10% FBS, 1% glutamine, 1% antibiotics) and 500pL of the cell suspension was plated per well in a 24-well plate. 100ng/mL of M-CSF was added with medium for différentiation of the cells. Cells were incubated 5 days and medium was replaced with fresh medium complemented with 100ng/mL 25 of M-CSF at day 3. For the polarization phases, solution of LPS-IFNg at 100ng/mL of LPS and
20ng/mL of IFNg complemented with isotype Controls (mlgG1 or hlgG4) (2pg/ml) or antiCMKLR1 antibodies (2pg/ml) (2G1 or 2G4, H6, BZ332 or 84939) or with C15 peptide (10nM) or RvE1 (10ng/ml) during 3 days to generate pro-inflammatory macrophages, pro-inflammatory IFNg macrophages could also be generated by adding only IFNg (20ng/mL) in culture medium. 30 For pro-resolution macrophage polarization, cells were incubated with IL-4 at 20ng/mL.
Following différentiation and/or polarization, phenotype and functional cytokines/chemokines release was studied by FACS analysis, ELISA and Western blot.
Example 10.2.Mice macrophages and DCs isolation and différentiation
-Isolation of murine bone marrow derived macrophages
Bone marrow cells were harvested and cultured in the RPMI medium supplemented with 10% FBS, glutamine and antibiotics containing macrophages colony-stimulating factor (M-CSF) at 100ng/mL for 5 days inducing the macrophages différentiation. The macrophages were harvested and cultured for 2 days with either IFNg (20ng/ml) and LPS (100ng/ml) inducing the 59 . .
pro-inflammatory polarization or with 1L-4 (20ng/ml) inducing the pro-resolution polarization.
Treatments were added during macrophage polarization at 2pg/ml.
-Bone marrow derived dendritic cells génération
Bone marrow cells were harvested and cultured in RPMI medium supplemented with 10% FBS, 5 glutamine and antibiotics and the dendritic cell différentiation was induced by GM-CSF at 20ng/ml for 7 days. Then, immature dendritic cells (iDC) were collected and cultured for 24 hours with LPS (100ng/ml) to induce the maturation from iDC to mDC. Treatments were added during différentiation and maturation at 2pg/ml.
After différentiation of mice pro-inflammatory or pro-resolution macrophagesas explain above, 10 cells were incubated in presence of medium, isotype contrai, anti-CMKLR1 antibodies: clones
H6 and BZ194, C15 peptides, 2G1 the anti-CMKLR1 antibody of interest or RvE1 were used. Then the sécrétion of IL10, CCL17 and IL12p40 was assessed by ELISA. Cytokines sécrétion was measured in the supernatant using an ELISA kit from BD. Supernatants were diluted at 1/10 for IL10 cytokines, 1/50 for CCL17 cytokines and 1/100 for IL12p40 cytokines.
- ELISA cytokines sécrétion study
Cytokines sécrétion was detected by ELISA according to the BD manufacturer instructions.
Briefly, supernatants were diluted in the appropriate buffer and incubated for 2 hours after ovemight coating with capture antibody and saturation. Then, cytokines were revealed with a détection biotin-coupled antibody and the signal was amplified with the biotin-streptavidin20 coupled peroxidase System. TMB supplied by BD Bioscience was used as substrate and colorimétrie reaction was read with TECAN.
- Activation cell markers analyzed by FACS
Dendritic cells were resuspended in PBS-FBS-EDTA and incubated with live and dead (LIVE/DEAD® Fixable Dead Cell Stains Yellow-Life Technologies) for 30 minutes on ice. 25 Staining of CD11c-BV711, CD11b-APCCy7, l/Ab-APC, CD103-PerCPCy5.5, CCR7-V450,
CD40-PeCy7, CD80-PE, CD86-FITC (ali provided by BD Pharmingen) were performed.
- Western blot analysis ERK/Akt
Mice pro-inflammatory macrophages (M1) were generated from bone marrow with M-CSF and polarized with IFN-gamma (IFNg) and LPS. Briefly, bone marrow cells were collected by 30 flushing the fémoral bone and cultured with 100ng/mL of mM-CSF for 5 days and then polarized with 20ng/mL of IFNg and 100ng/mL of LPS for 24h. Then, they were deprived of FBS for 24 hours with RPMI FBS 2% medium. Finally, mice pro-inflammatory macrophages were treated with 2pg/mL of 2G1 antibody at different times: 5, 10 and 30 minutes. Cells were collected in a RIPA buffer. The protein concentration was measured by a BCA protein kit assay. Proteins 35 were denatured by heating at 95°C for 5 minutes and diluted in DTT and Laemmli solution. After migration and transfer, the nitrocellulose membrane was blocked with 5% BSA in TBS-T for 2 hours. Anti-phospho-ERK antibody and anti-phospho-Akt antibody (1:1000) were incubated with 60 .
the membrane ovemight at 4°C and revealed with a peroxidase-conjugated secondary antibody (1:2000). Western blot Images were quantified by Multi Gauge software
Example 10.3: CMLKR1 expression after inflammatory stimuli on Human blood monocytes and mouse bone marrow myeloid and neutrophils cells.
Human monocytes were collected from PBMC of buffy coat of healthy volunteers and isolated by magnetic séparation or by élutriation. Then the monocytes (CD14 positive cells) were cultured in medium and treated with different pro-inflammatory stimuli 16 hours or 48 hours: LPS (100 ng/ml) or TNFa (100 U/ml) or IL6 (20 ng/ml).
Mouse monocytes (CD11b+ Ly6G- SSClow) and neutrophils (CD11b+ Ly6G- SSClow) were 10 obtained from bone marrow cells harvested and cultured in RPMI medium supplemented with
10% FBS, glutamine and antibiotics. Cells were then cultured in medium and treated with different pro-inflammatory stimuli 16 hours or 48 hours: LPS (100 ng/ml) or TNFa (100 U/ml) or IL6 (20 ng/ml).
The expression of CMLKR1 was measured by FACS using commercial anti-CMKLR1 antibodies 15 (Human anti-ChemR23: clone 84939 and Mouse anti-ChemR23 : clone 477806).
RESULTS: Analysis of the expression of CMKLR1 in mice myeloid lineage illustrated on Figure 14 revealed a good expression of the protein on monocytes and macrophages as well as on dendritic cells. On Figure 15, the expression of CMKLR1 on human monocyte and a mice bone marrow myeloid and neutrophil cells is illustrated. This expression is clearly increased by 20 inflammatory stimuli such as LPS, TNFa or IL6 (at least twice as compared to the contrai after
48h) confirming that CMKLR1 expression on myeloid cell lineage and overexpression during inflammation could represent a therapeutic approach to downregulate and/or induce resolution of inflammation. The DC activation markers were analyzed by FACS and results illustrated on Figure 16 shows a strong decrease of the expression of CD80, CD86, CD103, CD40 and lAb 25 when cells were treated with RvE1 lipid or with 2G1 antibody compared to the excipient or isotype contrai. These results indicate that 2G1 antibody is as active on CMKLR1 pathway on DCs as RVE1. Then inventors analyzed the CMKLR1 activation pathway on mice macrophages by Western blot. Figure 17 shows that anti-CMKLR1 antibody 2G1 was able to induce the activation of both Akt and Erk proteins after 10 to 30 minutes of incubation. These results 30 indicate that the 2G1 antibody is able to exhibit an agonist property against CMKLR1 receptor as does RvE1 lipid.
EXAMPLE 11. Compétition study on Chemerin-induced CMKLR1 activation with anti-CMKLR1 antibody
Methods.
Compétition assay to measure Chemerin-dependent B-arrestin recruitment by CMKLR1 receptor in presence of anti-CMKLR1 antibody:
The day before the assay, CH0-K1 CMKLR1 cells (Discover’X ref 93-0313E2) were plated in pre-warmed cell reagent then plated in a 96-well plate at 100 μΙ/well of cells as (Discover’X ref 15-103) and incubated 48 hours at 37°C, in a 5% CO2 humidified incubator. The anti-CMLKR1 antibody was diluted (22X in 7-point sériés of 3-fold dilutions from 1μΜ to 1nM) and cells were 5 incubated 30 min at 37°C with the antibody. Then cells were stimulated with Chemerin (2 or 6 nM) according to provider protocol (Discover’X ref 92-1036) 90 min at 37°C. The luminescence was measured after Working Détection Solution addition to the cells with a plate reader with 0,5 s intégration.
Measurement of the compétition of the anti-CMKLR1 antibody with Chemerin in the production of AMPc by CMKLR1 receptor:
The day before the experiment CHO-K1 CMKLR1 Gi cells (Discover’X ref 95-0080C2) were plated in pre-warmed cell reagent then plated in a 96-well plate at 100 μΙ/well of cells as (Discover’X ref 15-103) and incubated 24 hours at 37°C, in a 5% CO2 humidified incubator for 15 24 hours.
A mix of Chemerin agonist (6x in 7-point sériés of 3-fold dilutions from 10'7μΜ to 10'10M ) (Discover’X ref 92-1036 or 2324-CM-025 from R&D Systems) and forskolin (40μΜ) (a cAMP activator) (Discover’X ref 92-0005) was added to the cells during 30 min at 37°C; or cells were pre-incubated 30 min at 37°C with anti-CMKLR1 antibody (serial dilution : 6X in 7-point sériés of 20 3-fold dilutions from 1μΜ to 1nM). Then a mix of chemerin (2nM) + forskolin (60nM) was added to the cells 30 min at 37°C. For the détection cAMP, antibody reagent and cAMP working détection solution was added to the plate for 1 hour at room température, then cAMP solution A was added, and cells incubated 3 hours at room température in the dark. Bioluminescence was read with a plate reader with 0,5s intégration.
Results: In order to test if the antibody of the invention is an antagonist of the Chemerininduced CMKLR1 activation, two assays were performed, and the results are presented on Figure 18. Chemerin-induced inhibition of forskolin-dependent cAMP production is shown on Figure 18A (black circles or white squares); anti-CMLKR1 antibody of the invention could not revert this inhibition of production (black circles or white squares) as compared to the contrai 30 (grey diamonds). Chemerin-induced activation of the beta-arrestin presented Figure 18B, show that the anti-CMKLR1 antibody of the invention did not significantly modify chemerin-dependent activation of the beta-arrestin (white circles as compared to black diamonds). The antibodies of the invention do not hâve an antagonist activity of the CMLKR1-Chemerin interaction. Furthermore, the antibodies of the invention are not able to induce chemerin-induced CMKLR1 signaling pathway, confirming that these antibodies are not agonist of chemerin of the CMLKR1 pathway.
EXAMPLE 12. CD45Rbhigh T-cell transfer chronic colitis mouse model
Method: CD45Rbhi9h CD4 T cells were isolated from the spleen of naïve mice and sorted on an ARIA FACS after a négative sélection of the CD4 T cells by magnetic sorting, then injected intraperitoneally at 0,5.106 cells in 100pL of PBS into 6-weeks old female Rag1 knock-out mice. Anti-CMKLR1 antibody (2G1) or an isotype control were administered from day 32 after the 5 CD45Rbhi9h CD4 T cell transfer for 3 weeks three times a week at 1mg/kg. The follow-up of weight was evaluated three times a week and the weight variation was determined over the initial weight. * p < 0.05, ** p < 0.01.
Résulte: Figure 19 présents the percentage of weight variation over the time of animais treated with anti-CMLKR1 antibody or an isotype control. Both groups presented the same initial weight 10 évolution over the first 30 days are treated with anti-CMLKR1 antibody or an isotype control.
Mice treated with the anti-CMKLR1 continue to gain weight while, in contrast, control mice start to lose weight indicating development of chronic colitis as anticipated in this control group (Fig. 19A). A decrease of tissue thickness corresponding to réparation of colon was observed in the mice treated with the anti-CMKLR1. A decrease of fibrotic tissue was also observed (Fig. 19B). 15 The different scores represent anatomie pathology scores used to calculate the severity of the pathology. Scores, comprising inflammation scores, were lower in mice treated with antiCMKLR1 (Fig. 19C). The inventors confirm in a third model of colitis, here in a chronic model of inflammation, that anti-CMKLR1 antibodies of the invention could be of interest to treat chronic inflammatory and autoimmune diseases such as colitis.
EXAMPLE 13. Anti-tumor effect on the overall survival of mice hepatocarcinoma tumor model Method: Mice were anesthetized with a cocktail of xylazine/ketamine. After a laparotomy, tumoral Hepa 1.6 cells were injected in PBS through the portai vein (2,5.106 cells/100 pL) in PBS. The treatment was started 4 days after tumor injection. The anti-CMKLR1 antibody 25 (2G1 clone) and the hlgG1 istotype control were injected at 0.8mg/kg three times per week during 2 weeks. The anti-PD1 monoclonal antibody was injected twice a week during 2 weeks intraperitoneally in PBS (8mg/kg). Combination anti-CMKLR1 and anti-PD1 antibodies was tested as well (0.8 mg/kg and 8mg/kg respectively). The Overall survival was followed during sixty days and the percentage of survival in each condition was reported Figure 22.
Results: As shown in Figure 20, animais treated with the anti-CMKLR1 or the anti-PD1 antibodies had seen their survival rate prolonged only for 1 animal on 7 treated (15% of treated animais) indicating a partial response (PR). However, animais treated with a combination of anti-PD1 and anti-CMKLR1 antibodies allows a significant increase of the survival rate (from 15% to 45%) with animais alive 60 days after treatment, indicating a complété response (CR).
This resuit indicates an unexpected efficiency of the therapeutic combination (antiPD1/antiCMKLR1 antibodies) on HCC tumor model.
EXAMPLE 14. Antibody production in different cell lines.
CDR of 2G1 heavy chain were grafted in three human gemnlines framework, named IGHV323*04 (corresponding to SEQ ID No. 41), IGHV1-46*01 and IGHV7-4-1. CDR of 2G1 light chain were grafted in three human gemnlines framework, named IGKV1-13*02 (corresponding to SEQ ID No. 50), IGKV6-21*01 and IGKV3-11*01 (IMGT nomenclature). Each sequence was fused to 5 constant fragment of human immunoglobulin and co-transfected in mammalian cells to produce humanized antibody. In more details, for the construction of heavy chain of anti-ChemR23 A, antibody variable domain VH sequences were synthetized and cloned by EcoRV in pFUSECHIg-hG1 expression plasmid containing Fc of human lgG1 (pFUSE-CHIg-hG1 vector from Invivogen, Toulouse). For construction of light chain of anti-ChemR23 Antibody, variable 10 domain VL were synthetized and cloned by BsiWI in pFuse2CLIg-hk expression plasmid containing human CLkappa (pFuse2CLIg-hk from Invivogen, Toulouse). In mammalian HEK or CHO cells, we hâve co-transfected, by lipofectamine method, plasmids containing VH-hFcG1 with plasmid containing VL-CLkappa. After 3-7 days incubation, supernatant was recovered and quantified by sandwich ELISA assay. Supernatant could be purified by affinity on Protein A 15 chromatography (HiTrap, GeHealthcare) with citric acid 0.1M pH 3 elution buffer. Purified antibody was dialyzed in PBS and concentrated. They were quantified by UV (A280nm) and tested in activity assay against C7 antigen-specific peptides.
Results. As illustrated on Fig.21, the human germline IGHV3-23*04 for heavy chain was more efficient to produce the antibody in mammalian cells. Mutations implicated in the other 20 framework induced less productive chains. For light chain, the human germline IGKV1-13*02 was the best to produce humanized antibody, the other germline decreased 1-log the productivity. The combination of both humanized IGHV3-23*04 and IGKV1-13*02 is suitable for the production in high yield of humanized anti-CMKLR1 antibodies. As shown on Fig. 22, this combination indeed allows the production of sufficient quantifies of antibody, with a satisfactory 25 yield.
The germline IGHV3-23*04 and the germline IGKV1-13*02 were therefore selected for further humanization of antibodies.
Few mutations were added in heavy chain or light chain. In heavy chain, mutations G33A (in 30 CDR1), P60A (in CDR2), R94K (in FR3) were substituted to increase humanization, amino-acid
D61 (in CDR2) could be replace by amino-acid E or A to reduce risk of deamination of antibody (sequence variant vB-vD). In light chain, mutations S24R, S27Q, M33L (in CDR1), T51A (in CDR2), Y71F (in FR3) were substituted to increase humanization, amino-acid N92 could be replace by amino-acid Q to reduce risk of glycosylation of antibody (sequence variant vB-vD). 35 Each sequences were fused to constant fragment of human immunoglobulin and co-transfected in mammalian cells to produce humanized antibody. Results showed that ail combination of heavy and light chains produce antibodies. Productivity seems to be differently affected in mammalian cells depending on the combination of heavy and light chains, but always in an amount sufficient for efficient production in view of a therapeutic application of the antibody.
EXAMPLE 15. Récognition capability of anti-CMKLR1 antibodies produced in vitro and issued 5 from spécifie germlines of heavy chain variable domain and light chain variable domain.
For quantitation ELISA assay, donkey anti-human IgG, Fc spécifie (Jackson Immunoresearch;
USA; référencé 709-005-098) was immobilized on plastic at 1.3pg/ml in borate buffer (pH9) and supernatants containing antibody were added to measure binding, compared to standard antibody. After incubation and washing, mouse anti-human kappa antibody (Ose 10 Immunotherapeutics, référencé NaM76-5F3) was added and detected by peroxidase-labeled donkey anti-mouse IgG antibody (Jackson Immunoresearch; USA; référencé 715-036-151). Révélation of ELISA was made by conventional methods.
For activity ELISA assay, donkey anti-human IgG, Fc spécifie (Jackson Immunoresearch; USA; référencé 709-005-098) was immobilized on plastic at 1.3pg/ml in borate buffer (pH9) and 15 purified antibody were added to measure binding in BSA1% buffer, compared to wild-type 2G1.
After incubation and washing, biotinylated antigen-specific peptide (Biot-C7 peptide: biotinylated NH2 -PYHTLNLLELHHTAMPGSVFSLGLPLATALAIA -COOH, synthetized by synpeptide, SEQ ID No. 60) then, peroxidase-streptavidin (Jackson Immunoresearch; USA; référencé 016-030084) was added and revealed by conventional methods.
Combinations of heavy chains and light chains issued from VHvAv3-23*04 (SEQ ID No. 41 89.8% humanisation) and VLvAvI-13*01 (SEQ ID No. 50 - 82.1% humanisation) generated a humanized antibody with good binding activity to antigen-specific peptides (C7 peptide) like wild-type antibody 2G1. As illustrated on Fig. 23 and, the combinations of humanized antibody variable domain chains derived from 2G1 (For the heavy variable domain: HA corresponds to 25 VHvAv3-23*04 and SEQ ID No. 4 ; HC corresponds to SEQ ID No. 42; HD corresponds to SEQ
ID No. 43 ; For the light variable chain: LA corresponds to SEQ ID No. 50 ; LC corresponds to SEQ ID No. 52 ; LD corresponds to SEQ ID No. 53).
Ail combinations bound antigen-specific peptides (C7 peptide) with at least the same activity as 30 wild-type antibody 2G1. In some cases (the combinations of HCLC, HCLD, HDLC and HDLD), binding is even better than the germline antibody HALA and the wild type antibody 2G1 (Fig.
23). As illustrated on Fig. 24, the ED50 (ng/ml) of humanized antibodies is at least équivalent to the ED50 of 2G1 antibody, and better in most of the cases.
EXAMPLE 16. Biological effect on CCR7 internalization
MATERIAL AND METHODS. Macrophages were generated from monocytes of healthy volunteers with 100ng/mL of M-CSF for 5 days. Then, macrophages were collected and incubated with coated mAb at 10mg/mL in presence of 20ng/mL of IFNy in order to obtain M1 inflammatory macrophages. Then, M1 were phenotyped for CXCR4 and CCR7 by flow cytometry and cytokines released in the supernatant were dosed by ELISA. Dendritic cells were generated from monocytes of healthy volunteers with 50 ng/mL of GM-CSF and 20 ng/mL of IL4 for 6 days. Then DC were phenotyped for CCR7 by flow cytometry.
RESULTS. 2G1 and ail humanized 2G1 variants (HALA, HCLC, HCLD, HDLC and HDLD) were immobilized on plate. Isotype control was added as Controls. Two isotypes which prevent FcRy binding, i.e., 2G1-N297A (2G1wt mutated in N297A to reduce FcyR binding), and 2G4 (wt with isotype lgG4mutated in S228P to stabilise hinge région) were also added. Pro-inflammatory macrophages M1 were added on coated plate for 48h, and CCR7 expression at the surface of the macrophages was measured by flow cytometry.
As illustrated on Fig. 25, 2G1 and ail the humanized 2G1 variants were able to decrease expression of CCR7 at the surface of pro-inflammatory macrophages (M1). However, the internalization of CCR7 is not observed with isotype lgG1-N297A or lgG4 which prevents FcRy binding indicating that isotype lgG1 was preferred to obtain this biological activity.
EXAMPLE 17. Apoptosis and mortality of neutrophils
Neutrophils are usually located at the site of inflammation and their presence sustain the inflammatory process, thereby preventing the resolution of the inflammation to be initiated or to be actively sustained which may lead to chronic inflammation. Neutrophil apoptosis prevents the 20 release of neutrophil histotoxic contents and exerts an anti-inflammatory effect.
As illustrated on Fig. 26A, neutrophils life/death ratio is higher in cells treated with an antibody of the invention, thereby illustrating the effect on these cells of the agonist of the invention.
CASPASE-3 expression
MATERIAL AND METHODS:
PMN from healthy volunteers were incubated in culture medium with coated Ab at 10pg/mL for different times and collected for Caspase-3 staining analyzed by Western Blot. The intensity of Capase-3 expression was calculated on WB.
RESULTS: As illustrated on Fig. 26B, the administration of an anti-CMKLR1 agonist enhances caspase-3 activity, as compared to cells treated with a control antibody. The antibody HALA exhibits higher effect on caspase 3 activity as compared to the 2G1 antibody. 2G1 WT and HALA increases caspase-3 cleavage, which means that ChemR23 triggering leads to Caspase3-dependent apoptosis.
Percentaqe of dead PMN and ROS test (Fig. 26C):
PMN from healthy volunteers were incubated in culture medium with coated Ab at 10pg/mL for 35 24h or 5h and stained either with a dead/viability kit (LIVE/DEAD (Invitrogen)) or a spécifie marker of reactive oxygen species (ROS) respectively. The percentages of positive cells were obtained by analyzing the pictures with ImageJ software.
RESULTS: 2G1 and ail humanized variants of 2G1 increase the mortality of PMN after 24 hours. At 48 hours, the percentage of dead cells incubated with lgG1 control and HALA variant is similar indicating that antibodies by triggering CMKLR1 signaling only accelerate programmed cell death in PMN. 2G1 and ail humanized variants of 2G1 accelerate the death of PMN and so 5 the humanized variants preserve pro-resolutive properties. 2G1 and HALA variants increase the ROS production by PMN after 5h.
As illustrated on Fig. 27B, the percentage of ChemR23-positive cells (macrophages and neutrophils) is increased when inflammation is induced. But, the percentage of neutrophils in exudates is not significantly decreased in animais treated with the anti-CMKLR1 antibody (Fig.
27C; black square), while the overall percentage of macrophages in exudates is slightly enhanced (Fig. 27D). This indicates that the administration of the CMKLR1 agonist does not reduce the overall number of myeloid cells in the exudates, and has an effect on apoptosis of the neutrophils mainly at the site of inflammation. As illustrated on Fig. 27E and Fig. 27F, the percentage of dead neutrophils is increased when the agonist of CMKLR1 is administered, as 15 well as their death. These results illustrate the positive effect of the agonist of CMKLR1 for treating a delay in the resolution of the inflammation, since the neutrophil population is impacted not in exudates but at the site of inflammation.
In conclusion, except for induced apoptosis of neutrophils on the site of inflammation, a treatment with an antibody of the invention does not lead to the apoptosis of ail neutrophil 20 population. This feature may be advantageous to reduce side-effect(s).
EXAMPLE 18. Transmigration of neutrophils
Neutrophils migrate after recruitment to the inflammatory site, thereby initiating, enhancing and/or sustaining the inflammatory process.
MATERIAL AND METHODS
Human endothélial cells (HDMEC) were incubated for 24h in the transwell coated with gelatin and activated ovemight with TNF-alpha at 100U/mL or without inflammatory conditions. Then, PMN from healthy volunteers or ANCA patients were incubated in transwell containing the monolayer of HDMEC for 4 hours. Antibodies (Iso Ctrl and 2G1) were added at 10pg/mL +/30 TNF-alpha at 100U/mL during the 4hours of the transmigration assay. The lower transmigrated part of the transwell was collected and the transmigrated PMN were counted by flow cytometry using counting beads.
RESULTS
Neutrophil treated with 2G1 hâve a lower transmigration capability compared to cells treated 35 with control compounds (Fig. 28A). 2G1 avoids PMN transmigration through endothélial monolayer especially under inflammatory condition when PMN and endothélial cells were activated with TNFa in healthy volunteers and in AIDs’ patients (Fig. 28B).
The antibody of the invention has the capability to reduce the transmigration capability of neutrophils.
EXAMPLE 19 - CD62L expression
MATERIAL AND METHODS. PMN from healthy volunteers were incubated in culture medium with coated Ab at 10pg/mL for different times and collected for CD62L staining analyzed by flow cytometry (Fig. 29, left panel). The cell surface expression of CD62L in cells incubated with antibody of the invention is reduced compared to cells incubated in absence of the antibody. The soluble form of the CD62L released by shedding is detected by ELISA in the supernatant of PMN incubated with coated Ab. The treatment of PMN with the anti-ChemR23 antibody increases the concentration of soluble CD62L compared to the isotype control condition (Fig. 29, right panel).
EXAMPLE 20 - Mesothelioma model Survival
Mice treated according to the method explained in the description of the figure with an agonist of CMKLR1 hâve a higher survival rate than mice treated with a control antibody, thereby illustrating the positive effect of a compound according to the invention for treating mesothelioma (Fig. 30).
EXAMPLE 21- CRC model
As illustrated on Fig. 31 A, the tumor volume is reduced in animais treated with the antiCMKLR1 antibody of the invention, as compared to the control antibody. In several cases, complété remission is also observed, thereby illustrating the positive effect of a compound according to the invention for treating CRC.
Moreover, as exemplified on Fig. 31 B, the treatment with an anti-CMKLR1 monoclonal antibody (OSE-230) leads to a réduction of the stool score, and the réduction of tumor number.
EXAMPLE 22 - autoimmune encephalomyelitis experimental model
In this model, the curative administration of the antibody of the invention in EAE model does not lead to the réduction of the weight (Fig. 32A), as compared to animais treated with a control antibody. But the illness score is significantly reduced when the treatment is performed with the anti-CMKLR1 antibody (Fig. 32B). The anti-CMKLR1 antibody leads to a great improvement of the illness score as soon as ten-day post treatment as compared to the control, since the score is approximately 30 % lower in animais treated with the agonist compound. It is therefore illustrated that a treatment with an anti-CMKLR1 compound is effective for treating autoimmune encephalomyelitis.
EXAMPLE 23: Optimization of CDR amino acid residue
Few mutations were added in heavy chain or light chain of HDLD variant to substitute aminoacid implicated in immunogenicity predicted with in silico with IEDB software and HLA-II prédiction software (NetMHCpanll method).
It is further emphasized that among a very high number of possible mutations of amino acids, 5 the inventors hâve studied and identified some very advantageous ones than do not impact substantially and inappropriately the biological activity of the product. The expertise lead to the sélection described hereafter.
In heavy chain, amino acids substitution D61E in CDR2 (HD-61E, SEQ ID NO: 89), R52G in CDR2 (HD-R52G, SEQ ID NO: 90), or R52aG, A49S, N52S and Y53S in CDR2 (HEF, SEQ ID
NO: 91) were achieved to reduce immunogenicity. In light chain, amino acid N92 in CDR3 was substituted with amino acid S (LD-N92S, SEQ ID NO: 92) or Q (LD-T52S, SEQ ID NO: 93) to prevent post-translational modification. T52S in CDR2 was also substituted to reduce immunogenicity in LD-N92S variant. N92Q in CDR3 and T52S, T55E in CDR2, and W47L in Framework 2 were substituted to reduce immunogenicity in LEF variant (SEQ ID NO: 55). The sequences are indicated in the table below:
HD-D61E: 2G1-VH- D61E_IGHV3-23*04 | EVQLVESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAP GKGLELVATINRYGGSTYYAESVKGRFTISRDNSKNTLYLQMN SLRAEDTAVYYCPKLIYYGNEGDSWGQGTLVTVSS | SEQ ID NO: 89 |
HD-R52G: 2G1-VHR52G-IGHV3-23*04 | EVQLVESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAP GKGLELVATINGYGGSTYYAASVKGRFTISRDNSKNTLYLQMN SLRAEDTAVYYCPKLIYYGNEGDSWGQGTLVTVSS | SEQ ID NO: 90 |
HEF: 2G1- VHvEF_IGHV3-23*04 | EVQLVESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAP GKGLELVSTISGSGGSTYYAASVKGRFTISRDNSKNTLYLQMN SLRAEDTAVYYCPKLIYYGNEGDSWGQGTLVTVSS | SEQ ID NO: 91 |
LD-N92S: 2G1- VLvD2-IGKV1-13*02 | AIQLTQSPSSLSASVGDRVTITCRASQSVSFLHWYQQKPGKAP KRWIYDATKLTSGVPSRFSGSGSGTDFTLTISSLQPEDFATYY CQQWSSKPPLTFGGGTKVEIK | SEQ ID NO: 92 |
LD-T52S: 2G1-VLvE- IGKV1-13*02 | AIQLTQSPSSLSASVGDRVTITCRASQSVSFLHWYQQKPGKAP KRWIYDASKLTSGVPSRFSGSGSGTDFTLTISSLQPEDFATYY CQQWQSKPPLTFGGGTKVEIK | SEQ ID NO: 93 |
LEF: 2G1-VLvEF- IGKV1-13*02 | AIQLTQSPSSLSASVGDRVTITCRASQSVSFLHWYQQKPGKAP KRLIYDASKLESGVPSRFSGSGSGTDFTLTISSLQPEDFATYYC QQWQSKPPLTFGGGTKVEIK | SEQ ID NO: 55 |
Table 3: Optimized heavy and light chain of HDLD variant sequences.
As it will be detailed in the following examples, among ail the possible combinations, antibodies 20 comprising light chain LDT52S, and in particular HEF-LDT52S variant are particularly advantageous. In comparison to the other antibodies tested, HEF-LDT52S optimized to reduce immunogenicity présent high binding activity and stability while maintaining biological functions.
Each sequence was fused to constant fragment of human immunoglobulin and co-transfected in mammalian cells to produce humanized antibody. Results showed that ail combination of heavy and light chains produce antibodies. Productivity seems to be differently affected in mammalian cells depending on the combination of heavy and light chains, but always in an amount suitable 5 for efficient production in view of a therapeutic application of the antibody.
EXAMPLE 24: Récognition capability of anti-CMKLR1 antibodies produced in vitro
For activity ELISA assay, donkey anti-human IgG, Fc spécifie (Jackson Immunoresearch; USA; reference 709-005-098) was immobilized on plastic at 1.3pg/ml in borate buffer (pH9) and 10 purified antibody was added to measure binding in BSA1% buffer, compared to wild-type 2G1.
After incubation and washing, biotinylated antigen-specific peptide (Biot-C7 peptide: biotinylated NH2 -PYHTLNLLELHHTAMPGSVFSLGLPLATALAIA -COOH, synthetized by synpeptide, SEQ ID No. 60) then, peroxidase-streptavidin (Jackson Immunoresearch; USA; reference 016-030084) was added and revealed by conventional methods.
As illustrated on Fig. 33 the combinations of humanized antibody variable domain chains derived from 2G1 (For the heavy variable domain: HD corresponds to SEQ ID No. 43 and HEF correspond to SEQ ID NO: 91 ; For the light variable chain: LD corresponds to SEQ ID No. 53 ; LD-T52S corresponds to SEQ ID No. 93 and LEF corresponds to SEQ ID NO: 55) generated a 20 humanized antibody with better binding activity than the germline antibody HALA and the wild type antibody 2G1 to antigen-specific peptides (C7 peptide).
EXAMPLE 25: Stability assay
Each purified humanized anti-ChemR23 antibody (HALA, HDLD, HD-LDT52S, HEF-LDT52S, 25 HEF-LEF) were incubated for 7 days at 4°C or 37°C. After 7 days, the binding of purified antibodies was analyzed by ELISA assay and the aggregate formation was analyzed by gel filtration (Superdex 200 10/300GL, GeHealthcare).
As illustrated on Fig. 34A , ail the purified antibodies presented similar binding activity at 37°C, 4°C or -80°C. As illustrated on Fig. 34B, the percentage of aggregate did not change after 7 30 days at 37°C for HDLD and HEF-LDT52S.
EXAMPLE 26: Biological effect on CCR7 internalization
The humanized 2G1 variant HEF-LD-T52S was immobilized on plate. Isotype control was added as control. Pro-inflammatory macrophages M1 were added on coated plate for 48h , and 35 CCR7 expression at the surface of the macrophages was measured by flow cytometry.
As illustrated on Fig. 35 , the humanized 2G1 variant HEF-LD-T52S was able to decrease expression of CCR7 at the surface of pro-inflammatory macrophages (M1) compared to isotype control. The humanized 2G1 variant HEF-LD-T52S optimized to reduce immunogenicity conserved functional properties of 2G1 antibody.
EXAMPLE 27: Biological effect on PMN viability
PMN from healthy volunteers were incubated in culture medium with coated HEF-LDT52S, 5 HEF-LEF and HDLD antibody variants at 10pg/mL for 24h and stained either with a dead/viability kit (LIVE/DEAD (Invitrogen)). The percentages of positive cells were obtained by analyzing the pictures with Fiji software. Isotype control was added as control. A mutated version of HEF-LDT52S antibody which does not bind to Fc receptors (FcR) (HEF-LDT52S N297A) were also added. As illustrated in Fig. 36 , 2G1 and ali HEF-LDT52S, HEF-LEF and 10 HDLD humanized variants of 2G1 accelerate the death of PMN and so the humanized variants preserve pro-resolutive properties.
The humanized HEF-LDT52S variant was optimized to reduce immunogenicity. This optimized variant maintains high binding activity and stability while maintaining biological functions.
Bibliography
Arijs, I., De Hertogh, G., Lemaire, K., Quintens, R„ Van Lommel, L., Van Steen, K., Leemans, P., Cleynen, L, Van Assche, G., Vermeire, S., et al. (2009a). Mucosal gene expression of antimicrobial peptides in inflammatory bowel disease before and after first infliximab treatment. PloS One 4, e7984.
Arijs, L, Li, K., Toedter, G., Quintens, R., Van Lommel, L., Van Steen, K., Leemans, P., De Hertogh, G., Lemaire, K., Ferrante, M., et al. (2009b). Mucosal gene signatures to predict response to infliximab in patients with ulcerative colitis. Gut 58,1612-1619.
Arijs, L, Hertogh, G.D., Lemmens, B., Lommel, L.V., Bruyn, M. de, Vanhove, W., Cleynen, L, Machiels, K., Ferrante, M., Schuit, F., et al. (2018). Effect of vedolizumab (anti-a437-integrin) therapy on histological healing and mucosal gene expression in patients with UC. Gut 67, 4352.
Bannenberg, G.L., Chiang, N., Ariel, A., Arita, M., Tjonahen, E., Gotlinger, K.H., Hong, S., and Serhan, C.N. (2005). Molecular circuits of resolution: formation and actions of resolvins and protectins. J. Immunol. Baltim. Md 1950 174, 4345-4355.
Bozaoglu, K., Bolton, K., McMillan, J., Zimmet, P., Jowett, J., Collier, G., Walder, K., and Segal, D. (2007). Chemerin Is a Novel Adipokine Associated with Obesity and Metabolic Syndrome. Endocrinology 148, 4687-4694.
Buckley, C.D., Gilroy, D.W., and Serhan, C.N. (2014). Proresolving Lipid Mediators and Mechanisms in the Resolution of Acute Inflammation. Immunity 40, 315-327.
Cash, J.L., et al., 2008. Synthetic chemerin-derived peptides suppress inflammation through ChemR23. J. Exp. Med. 205, 767-775
Ernst, M.C., and Sinal, C.J. (2010). Chemerin: at the crossroads of inflammation and obesity. Trends Endocrinol. Metab. TEM 21, 660-667.
Goralski, K.B., McCarthy, T.C., Hanniman, E.A., Zabel, B.A., Butcher, E.C., Parlee, S.D., Muruganandan, S., and Sinal, C.J. (2007). Chemerin, a Novel Adipokine That Régulâtes Adipogenesis and Adipocyte Metabolism. J. Biol. Chem. 282, 28175-28188.
Ichim, G., and Tait, S.W.G. (2016). A fate worse than death: apoptosis as an oncogenic process. Nat. Rev. Cancer 16, 539-548.
Kaur, J., Adya, R., Tan, B.K., Chen, J., and Randeva, H.S. (2010). Identification of chemerin receptor (ChemR23) in human endothélial cells: Chemerin-induced endothélial ângiogenesis. Biochem. Biophys. Res. Commun. 391,1762-1768.
Peyrassol, X„ Laeremans, T., Gouwy, M., Lahura, V., Debulpaep, M., Damme, J.V., Steyaert, J., Parmentier, M., and Langer, I. (2016). Development by Genetic Immunization of Monovalent
Antibodies (Nanobodies) Behaving as Antagoniste of the Human ChemR23 Receptor. J. Immunol. 196, 2893-2901.
Roh, S., Song, S.-H., Choi, K.-C., Katoh, K., Wittamer, V., Parmentier, M., and Sasaki, S. (2007). Chemerin-a new adipokine that modulâtes adipogenesis via its own receptor. Biochem. 5 Biophys. Res. Commun. 362, 1013-1018.
Samson, M., Edinger, A.L., Stordeur, P., Rucker, J., Verhasselt, V., Sharron, M., Govaerts, C., Mollereau, C., Vassart, G., Doms, R.W., et al. (1998). ChemR23, a putative chemoattractant receptor, is expressed in monocyte-derived dendritic cells and macrophages and is a coreceptor for SIV and some primary HIV-1 strains. Eur. J. Immunol. 28,1689-1700.
Sell, H., Laurencikiene, J., Taube, A., Eckardt, K., Cramer, A., Horrighs, A., Amer, P., and Eckel, J. (2009). Chemerin Is a Novel Adipocyte-Derived Factor Inducing Insulin Résistance in Primary Human Skeletal Muscle Cells. Diabètes 58, 2731-2740.
Serhan, C.N. (2014a). Pro-resolving lipid mediators are leads for resolution physiology. Nature 510, 92-101.
Serhan, C.N. (2014b). Pro-resolving lipid mediators are leads for resolution physiology. Nature 510, 92-101.
Sulciner, M.L., Serhan, C.N., Gilligan, M.M., Mudge, D.K., Chang, J., Gartung, A., Lehner, K.A., Bielenberg, D.R., Schmidt, B., Dalli, J., et al. (2017). Resolvins suppress tumor growth and enhance cancer therapy. J. Exp. Med. jem.20170681.
Watts, S.W., Dorrance, A.M., Penfold, M.E., Rourke, J.L., Sinal, C.J., Seitz, B., Sullivan, T.J., Charvat, T.T., Thompson, J.M., Burnett, R., et al. (2013). Chemerin connects fat to arterial contraction. Arterioscler. Thromb. Vase. Biol. 33,1320-1328.
Wittamer, V., Franssen, J.-D., Vulcano, M., Mirjolet, J.-F., Poul, E.L, Migeotte, I., Brézillon, S., Tyldesley, R., Blanpain, C., Detheux, M., et al. (2003). Spécifie Recruitment of Antigen25 presenting Cells by Chemerin, a Novel Processed Ligand from Human Inflammatory Fluids. J. Exp. Med. 198, 977-985.
Zabel, B.A., Rott, A., and Butcher, E.C. (2015). Leukocyte chemoattractant receptors in human disease pathogenesis. Annu. Rev. Pathol. 10, 51-81.
As it will be detailed in the following examples, among ail the possible combinations, antibodies comprising light chain LDT52S, and in particular HEF-LDT52S variant are particularly advantageous. In comparison to the other antibodies tested, HEF-LDT52S optimized to reduce immunogenicity présent high binding activity and stability while maintaining biological 5 functions.
Each sequence was fused to constant fragment of human immunoglobulin and co-transfected in mammalian cells to produce humanized antibody. Results showed that ail combination of heavy and light chains produce antibodies. Productivity seems to be differently affected in mammalian cells depending on the combination of heavy and light chains, but always in an 10 amount suitable for efficient production in view of a therapeutic application of the antibody.
EXAMPLE 24: Récognition capability of anti-CMKLR1 antibodies produced in vitro
For activity ELISA assay, donkey anti-human IgG, Fc spécifie (Jackson Immunoresearch;
USA; reference 709-005-098) was immobilized on plastic at 1.3pg/ml in borate buffer (pH9) 15 and purified antibody was added to measure binding in BSA1% buffer, compared to wild-type
2G1. After incubation and washing, biotinylated antigen-specific peptide (Biot-C7 peptide: biotinylated NH2 -PYHTLNLLELHHTAMPGSVFSLGLPLATALAIA -COOH, synthetized by synpeptide, SEQ ID No. 60) then, peroxidase-streptavidin (Jackson Immunoresearch; USA; reference 016-030-084) was added and revealed by conventional methods.
As illustrated on Fig. 33 the combinations of humanized antibody variable domain chains derived from 2G1 (For the heavy variable domain: HD corresponds to SEQ ID No. 43 and HEF correspond to SEQ ID NO: 91 ; For the light variable chain: LD corresponds to SEQ ID No. 53 ; LD-T52S corresponds to SEQ ID No. 93 and LEF corresponds to SEQ ID NO: 55) generated 25 a humanized antibody with better binding activity than the germline antibody HALA and the wild type antibody 2G1 to antigen-specific peptides (C7 peptide).
EXAMPLE 25: Stability assay
Each purified humanized anti-ChemR23 antibody (HALA, HDLD, HD-LDT52S, HEF-LDT52S, 30 HEF-LEF) were incubated for 7 days at 4°C or 37°C. After 7 days, the binding of purified antibodies was analyzed by ELISA assay and the aggregate formation was analyzed by gel filtration (Superdex 200 10/300GL, GeHealthcare).
As illustrated on Fig. 34A, ail the purified antibodies presented similar binding activity at 37°C, 4°C or -80°C. As illustrated on Fig. 34B, the percentage of aggregate did not change after 7 35 days at 37°C for HDLD and HEF-LDT52S.
Claims (22)
1. An anti- Chemerin Like Receptor 1 (CMKLR1) antibody or antigen-binding fragment thereof which binds to human CMKLR1, said antibody of antigen-binding fragment thereof comprising:
a. an antibody heavy chain variable (VH) domain comprising the three CDRs VHCDR1, VHCDR2 and VHCDR3, wherein:
- VHCDR1 is selected from the group consisting of SEQ ID No.3, SEQ ID No. 4, SEQ ID No. 5, SEQ ID No. 6 and SEQ ID No. 7; and
- VHCDR2 is selected from the group consisting of SEQ ID No. 9, SEQ ID No. 10, SEQ ID No. 11, SEQ ID NO: 12 and SEQ ID No. 61; and
- VHCDR3 is selected from the group consisting of SEQ ID No. 13, SEQ ID No. 14, SEQ ID No. 15 and SEQ ID No. 16; and
b. an antibody light chain variable (VL) domain comprising the three CDRs VLCDR1, VLCDR2 and VLCDR3, wherein:
- VLCDR1 is selected from the group consisting of SEQ ID No. 17, SEQ ID No. 18, SEQ ID No. 19, SEQ ID No. 20, SEQ ID No. 21, SEQ ID No. 22 and SEQ ID No. 23; and
- VLCDR2 is selected from the group consisting of SEQ ID No. 24, SEQ ID No. 25, SEQ ID No. 26, SEQ ID No. 27, SEQ ID No. 28, SEQ ID No. 29, SEQ ID No. 30, SEQ ID No. 31, SEQ ID No. 32 and SEQ ID No. 33; and
- VLCDR3 is selected from the group consisting of SEQ ID No. 34, SEQ ID No. 35 and SEQ ID No. 36.
2. The anti-CMKLR1 antibody or antigen-binding fragment thereof according to claim 1 wherein the antibody or antigen-binding fragment thereof binds specifically to an epitope located within third extra-cellular loop (EL3) of CMKLR1, or within the polypeptide comprising amino acid sequence SEQ ID No: 2 or SEQ ID No. 59 or to an epitope located within amino acid sequence SEQ ID No. 60.
3. The anti-CMKLR1 antibody or antigen-binding fragment thereof according to claim 1 or 2, which is a Resolvin E1-like agonist of CMKLR1 having an effect of a proresolution factor of inflammation.
4. The anti-CMKLR1 antibody or antigen-binding fragment thereof according to any one of daims 1 to 3, wherein:
- VHCDR1 is selected from the group consisting of SEQ ID No. 3 and SEQ ID No.
J 4; and/or
- VHCDR2 is selected from the group consisting of SEQ ID No. 9, SEQ ID No. 10, SEQ ID No. 11 and SEQ ID No. 61; and/or
- VHCDR3 is selected from the group consisting of SEQ ID No. 13, SEQ ID No. 14 and SEQ ID No. 15.
5. The anti-CMKLR1 antibody or antigen-binding fragment thereof according to any one of daims 1 to 4, wherein:
- VLCDR1 is selected from the group consisting of SEQ ID No. 17, SEQ ID No. 18, SEQ ID No. 19 and SEQ ID No. 23, and/or
- VLCDR2 is selected from the group consisting of SEQ ID No. 24, SEQ ID No. 25, SEQ ID No. 26, SEQ ID No. 27 and SEQ ID No. 33; and/or
- VLCDR3 is selected from the group consisting of SEQ ID No. 34, SEQ ID No. 35 and SEQ ID No. 36.
6. The anti-CMKLR1 antibody or antigen-binding fragment thereof according to any one of daims 1 to 5 which comprises a heavy chain variable domain comprising or consisting of an amino acid sequence selected from the group consisting of SEQ ID No. 38, SEQ ID No. 39, SEQ ID No. 40 and SEQ ID No. 62 and/or a light chain variable domain comprising or consisting of an amino acid sequence selected from the group consisting of SEQ ID No. 49, SEQ ID No. 50, SEQ ID No. 51, SEQ ID No. 52, SEQ ID No. 53, SEQ ID No. 54, SEQ ID No. 55, SEQ ID No. 56, SEQ ID No. 57 and, SEQ ID No. 58.
7«
7. The anti-CMKLR1 antibody or antigen-binding fragment thereof according to any one of daims 1 to 6, which comprises a heavy chain variable domain comprising or consisting of the amino acid sequence selected from the group consisting of SEQ ID No. 38, SEQ ID No. 39, SEQ ID No. 40 and, SEQ ID No. 62; and a light chain variable domain comprising or consisting of an amino acid sequence selected from the group consisting of SEQ ID No. 54, SEQ ID No. 55 and , SEQ ID No. 56.
8. The anti-CMKLR1 antibody or antigen-binding fragment thereof according to any one of daims 1 to 3, which comprises the following CDRs: VHCDR1 of SEQ ID No. 4; VHCDR2 of SEQ ID No. 12; VHCDR3 of SEQ ID No. 13, VLCDR1 of SEQ ID No. 19, VLCDR2 of SEQ ID No. 26, and VLCDR3 of SEQ ID No. 35.
:76
9. The anti-CMKLR1 antibody or antigen-binding fragment thereof according to any one J of daims 1 to 8, which comprises the following frameworks: VHFR1 of SEQ ID No.
65, VHFR2 of SEQ ID No. 67, VHFR3 of SEQ ID No. 69, VHFR4 of SEQ ID No. 71, VLFR1 of SEQ ID No. 72, VLFR2 of SEQ ID No. 73, VLFR3 of SEQ ID No. 76 and VLFR4 of SEQ ID No. 77.
10. The anti-CMKLR1 antibody or antigen-binding fragment thereof according to daim 8 or 9, which comprises a heavy chain variable domain comprising or consisting of the amino acid sequence SEQ ID No. 91 and a light chain variable domain comprising or consisting of the amino acid sequence SEQ ID No. 93.
11. The anti-CMKLR1 antibody or antigen-binding fragment thereof according to any one of daims 1 to 10, which does not activate the beta-arrestin signaling pathway in CMKLR1-positive cells in vitro and/or in vivo.
12. The anti-CMKLR1 antibody or antigen-binding fragment thereof according to any one of daims 1 to 11, which does not exhibit a significant déplétion of CMKLRI-positive cells in vitro and/or in vivo.
13. The anti-£MKLR1 antibody or antigen-binding fragment thereof according to any one of daims 1 to 12, which does not compete with Chemerin for the binding to CMKLR1, and/or which does not interfère with the binding of Chemerin to CMKLR1.
14. The anti-CMKLR1 antibody or antigen-binding fragment according to any one of daims 1 to 13 which is a humanized monoclonal antibody or antigen-binding fragment thereof, wherein the antibody light chain constant domain is derived from a human kappa light chain constant domain, wherein the light chain constant domain comprises or consists of the sequence of SEQ ID No: 79, and wherein the antibody heavy chain constant domain is derived from a human lgG1, lgG2, lgG3, or lgG4 heavy chain constant domain wherein the antibody heavy chain constant domain comprises or consists of the amino acid sequence of SEQ ID 80, SEQ ID No. 81, SEQ ID No. 82, SEQ ID No. 83 or SEQ ID No. 84.
15. An antibody or antigen-binding fragment which specifically binds to human CMKLR1 which comprises an antibody heavy chain variable domain comprising (i) VHCDR2 comprising or consisting of an amino acid sequence set forth in SEQ ID No: 9, SEQ ID No. 10, SEQ ID No. 11, SEQ ID No. 12 and SEQ ID No. 61, and (ii) VHCDR3 comprising or consisting of an amino acid sequence set forth in SEQ ID No: 13, SEQ
ID No. 14, SEQ ID No. 15 and SEQ ID No. 16 or a mutated sequence thereof wherein amino acid residue(s) is(are) substituted provided that amino acid residues at positions 1 and 2 of the mutated sequence are respectively L and I; and wherein the anti-CMKLR1 compound binds specifically to an epitope located within the third extra-cellular loop (EL3) of CMKLR1, and wherein said compound competes with an antibody comprising the heavy chain variable domain corresponding to SEQ ID No: 37 and the light chain variable domain corresponding to SEQ ID No: 49, for the binding to a polypeptide comprising or consisting of amino acid sequence of sequence SEQ ID No: 2 or SEQ ID No. 59 or of SEQ ID No. 60 or to a polypeptide comprising or consisting of the third loop (EL3) of the extracellular domain of CMKLR1.
16. The anti-CMKLR1 antibody or antigen-binding fragment thereof according to claim 15 wherein the antibody or antigen-binding fragment thereof binds specifically to a polypeptide comprising or consisting of amino acid sequence SEQ ID No: 2 or SEQ ID No. 59 orto an epitope located within amino acid sequence SEQ ID No. 60.
17. The anti-CMKLR1 antibody or antigen-binding fragment thereof according to claim 15 or 16, whjch comprises the following CDRs:
- VHCDR1 of SEQ ID No. 4;
- VHCDR2 of SEQ ID No. 12;
- VHCDR3 of SEQ ID No. 13,
- VLCDR1 of SEQ ID No. 19,
- VLCDR2 of SEQ ID No. 26, and
- VLCDR3 of SEQ ID No. 35.
18..The anti-CMKLR1 antibody or antigen-binding fragment thereof according to any one of daims 15 to 17, which comprises the following frameworks: VHFR1 of SEQ ID No. 65, VHFR2 of SEQ ID No. 67, VHFR3 of SEQ ID No. 69, VHFR4 of SEQ ID No. 71, VLFR1 of SEQ ID No. 72, VLFR2 of SEQ ID No. 73, VLFR3 of SEQ ID No. 76, and VLFR4ofSEQ ID No. 77.
19. The anti-CMKLR1 antibody or antigen-binding fragment thereof according to daim 18, which comprises a heavy chain variable domain comprising or consisting of the amino acid sequence SEQ ID No. 91 and a light chain variable domain comprising or consisting of the amino acid sequence SEQ ID No. 93.
20. The anti-CMKLR1 antibody or antigen-binding fragment thereof according to any one ’ of daims 1 to 19 for use in the préventive or the therapeutic treatment of an inflammatory disease, an autoimmune disease, an infection disease or a cancer.
21. The anti-CMKLR1 antibody or antigen-binding fragment thereof according to any one of daims 1 to 20 for use in the préventive or the therapeutic treatment of:
- an inflammatory disease selected from the group consisting of acute inflammatory disease, chronic inflammatory disease, chronic inflammatory pulmonary disease, keratoconjunctivitis, periodontal disease, eczema, inflammatory bowel disease, cystic fibrosis, NASH (Nonalcoholic steatohepatitis), scleroderma, and antineutrophil cytoplasm antibodies-related disease (ANCA),
- an autoimmune disease selected from the group consisting of diabètes, psoriasis, lupus, rheumatoid arthritis, multiple sclerosis, Sjogren’s syndrome, celiac disease, vasculitis, and myasthenia gravis,
- an infection disease selected from the group consisting of: sepsis, peritonitis, degenerative diseases, wound healing disorders and dry eye syndrome; or
- a cancer selected from the group consisting of: metastatic cancers, solid or liquid cancers, carcinoma, hepatocarcinoma, mammary carcinoma, colon carcinoma, colorectal cancer, lung cancer, mesothelioma or myeloid cancer and leukemia.
22. The anti-CMKLR1 antibody or antigen-binding fragment thereof according to any one of daims 1 to 21 for use in the préventive or the therapeutic treatment NASH (Nonalcoholic steatohepatitis), scleroderma, cystic fibrosis or anti-neutrophil cytoplasm antibodies-related disease (ANCA).
Applications Claiming Priority (2)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
EP19306323.7 | 2019-10-09 | ||
EP19306322.9 | 2019-10-09 |
Publications (1)
Publication Number | Publication Date |
---|---|
OA21239A true OA21239A (en) | 2024-03-18 |
Family
ID=
Similar Documents
Publication | Publication Date | Title |
---|---|---|
JP6609724B1 (en) | Anti-human 4-1BB antibody and use thereof | |
JP7425604B2 (en) | Anti-CTLA4-anti-PD-1 bifunctional antibodies, pharmaceutical compositions and uses thereof | |
CN107683289B (en) | IL13R alpha 2 binding agents and their use in cancer treatment | |
US20210147558A1 (en) | Anti-chemokin like receptor 1 antibodies and their therapeutic applications | |
JP7324565B2 (en) | Antibodies against CD127 | |
JP2020505017A (en) | Anti-PD-1 monoclonal antibody, its production method and use | |
TWI801862B (en) | Anti-tigit antibodies, preparation methods and use thereof | |
KR101695056B1 (en) | Humanized antibodies targeting the ec1 domain of cadherin-11 and related compositions and methods | |
KR20220121850A (en) | Anti-CD73 antibodies and uses thereof | |
JP5554703B2 (en) | Compositions and methods for the treatment of autoimmune diseases | |
MX2015002337A (en) | Antibodies and vaccines for use in treating ror1 cancers and inhibiting metastasis. | |
TW201922784A (en) | 4-1bb antibody and preparation method and use thereof | |
JP2009531273A (en) | Method for damaging cells using effector function of anti-EphA4 antibody | |
WO2020063660A1 (en) | An anti-ox40 antibody, antigen-binding fragment thereof, and the pharmaceutical use | |
JP6218603B2 (en) | Mouse anti-Aggrus monoclonal antibody | |
JP2024500920A (en) | Anti-IL1RAP antibody | |
US20240084019A1 (en) | Anti-Chemokin Like Receptor 1 Humanized Antibodies and Their Therapeutic Applications | |
JP2022512672A (en) | Binding protein-toxin fusion containing anthracyclines, and its use in immuno-oncological applications | |
EP2843051B1 (en) | Anti-human cd69 antibody, and use thereof for medical purposes | |
JP2018513141A (en) | Agents that specifically bind to RGD motifs of human cadherin-17, human cadherin-5, human cadherin-6 and human cadherin-20 | |
OA21239A (en) | Anti-chemokin like receptor 1 humanized antibodies and their therapeutic applications. | |
WO2024028509A2 (en) | Treatment of an inflammation-associated disease in a patient expressing high chemerin level | |
JP2019099492A (en) | Anti-human IL-26 antibody | |
WO2022089644A1 (en) | Fully human antibody targeting cd5, and fully human chimeric antigen receptor (car) and application thereof | |
WO2023186113A1 (en) | Antigen-binding protein targeting pd-l1 and cd40, preparation therefor, and use thereof |