OA18264A - 2-amino-3,5-difluoro-3,6-dimethyl-6-phenyl3,4,5,6-tetrahydropyridines as bacel inhibitors for treating Alzheimer's disease. - Google Patents

2-amino-3,5-difluoro-3,6-dimethyl-6-phenyl3,4,5,6-tetrahydropyridines as bacel inhibitors for treating Alzheimer's disease. Download PDF

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OA18264A
OA18264A OA1201700164 OA18264A OA 18264 A OA18264 A OA 18264A OA 1201700164 OA1201700164 OA 1201700164 OA 18264 A OA18264 A OA 18264A
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Prior art keywords
difluoro
dimethyl
tetrahydropyridin
amino
disease
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OA1201700164
Inventor
Mauro Marigo
Lena TAGMOSE
Karsten Juhl
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H. Lundbeck A/S
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Publication of OA18264A publication Critical patent/OA18264A/en

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Abstract

The present invention is directed to compounds according to Formula (I)

Description

FIELD OF THE INVENTION
The présent Invention provides compounds which act as BACE1 inhibitors. Separate aspects of the invention are directed to pharmaceutical compositions comprising said compounds and uses of the compounds to treat neurodegenerative and cognitive disorders.
BACKGROUND ART
Dementia is a clinical syndrome characterized by déficits in multiple areas of cognîtion that cannot be explained by normal aging, a noticeable décliné in function, and an absence of delirium. In addition, neuropsychiatrie symptoms and focal neurological findings are usually présent. Dementia is further classified based on etiology. Alzheimeris disease (AD) is the most common cause of dementia, followed by mixed AD and vascular dementia, Lewy body dementia (DLB), and frontotemporal dementia. β-Amyloid deposîts and neurofibrillary tangles are considered to be major pathologie characterizations associated with AD which is characterized by the loss of memory, cognîtion, reasoning, judgment, and orientation. Also affected, as the disease progresses, are motor, sensory and linguistic abilities until global Impairment of multiple cognitive functions occurs. βAmyloid deposîts are predominantly an aggregate of Αβ peptide, which In tum Is a product of the proteolysls of amyloid precursor protein (APP) as part of the β-amyloidogenic pathway. Αβ peptide results from the cleavage of APP at the C-terminal by one or more γ-secretases and at the N-terminal by β-secretase 1 (BACE1 ) also known as aspartyl protease 2. BACE1 activity is correlated directly to the génération of Αβ peptide from APP.
Studies Indicate that the Inhibition of BACE1 impedes the production of Αβ peptide. Further, BACE1 co-localizes with Its substrate APP in Golgi and endocytîc compartments (Willem M, et al. Semin.Cell Dev. Biol, 2009,20,175-182). Knock-out studies in mice hâve demonstrated the absence of amyloid peptide formation while the animais are healthy and fertile (Ohno M, et al. Neurobiol. Dis., 2007,26,134-145). Genetic ablation of BACE1 In APP-overexpressing mice has demonstrated absence of plaque formation, and the reverse of cognitive déficits (Ohno M, et al. Neuron·, 2004,41, 27-33). BACE1 levels are elevated in the brains of sporadic AD patients (Hampel and Shen, Scand. J. Clin. Lab. Invest. 2009,69,8-12).
These convergent findings Indicate that the inhibition of BACE1 may be a therapeutic target for the treatment of AD as well as disorders for which the réduction of Αβ deposîts is bénéficiai.
AstraZeneca announced the discovery of AZD3839, a potent BACE1 inhibitor clinical candidate for the treatment of AD (Jeppsson, F., et al. J. Biol. Chem., 2012,287,41245-41257) in October2012. The effort which led to the discovery of AZD3839 was further described In Ginman, T., et al. J. Med. Chem., 2013, 56,4181-4205. The Ginman publication describes the issues which were 5 overcome In connection with the discovery and identification of AZD3839. These issues related to poor blood brain barrier pénétration and P-giycoprotein mediated efflux of the compounds resulting in lack of brain exposure.
The Ginman manuscript hypothesized that the différences In brain exposure would largely be due to the core structures and Structure Activity Relationship data was provided wherein the in vitro 10 properties on the reported compounds were given into four tables according to core sub-types. In table 4, a sériés of amidine containing compounds are described that were considered Interesting from an activity perspective. However, the data suggests that the amidine containing core dîd not exhibit a favourable blood brain barrier permeability profile.
Researchers from Hoffmann-La Roche and Siena Biotech also reported the discovery of amidine containing compounds (Woltering, T. J., et al. Bioorg. Med. Chem. Lett. 2013,23, 42394243). These compounds (compounds 17 and 18 in the paper) were found notto hâve any in vivo effect (lack of Αβ40 réduction in brain In wild type mice).
Contrary to the teachings of Ginman, et al. and Woltering, T. J., et al., the Inventors hâve discovered a sériés of amidine compounds which are brain pénétrant. Accordingly, the présent 20 Invention relates to novel compounds having BACE1 Inhibitory activity, to their préparation, to their medical use and to médicaments comprising them.
SUMMARY OF THE INVENTION
It Is an objective ofthe présent invention to provide compounds that Inhibit BACE1. Accordingly, the présent invention relates to compounds of Formula I
wherein Ar is selected from the group consisting of phenyl, pyridyf, pyrimîdyl, pyrazinyl, Imidazolyl, pyrazolyl, thiazolyl, oxazolyl, isoxazolyl, and where the Ar 1s optionally substituted with one or more substituent selected from halogen, CN, CpCfe alkyl, CrCe alkenyl, CrCe alkynyl, CrCe fluoroalkyl or
CrCe alkoxy; and
R1 is one or more hydrogen, halogen, C1-C3 fluoroalkyl or C1-C3 alkyl;
or a pharmaceutically acceptable sait thereof.
In one embodiment the présent Invention provides a compound of Formula I or a pharmaceutically acceptable sait thereof for use in therapy.
The présent Invention further provides a pharmaceutical composition comprising a compound of Formula I or a pharmaceutically acceptable sait thereof and a pharmaceutically acceptable carrier.
In one embodiment the Invention provides the use of a compound of Formula I or a pharmaceutically acceptable sait thereof in the manufacture of a médicament for the treatment of a neurodegenerative or cognitive disorder.
In one embodiment, the invention provides a compound of Formula I or a pharmaceutically acceptable sait thereof for use In a method for the treatment of a neurodegenerative or cognitive disorder.
In one embodiment the présent invention provides a method of treating a neurodegenerative or cognitive disorder comprising administering a therapeutically effective amount of a compound of Formula I or a pharmaceutically acceptable sait thereof to a patient In need thereof.
Further embodiments of the Invention are provided Immediately below:
In one embodiment, the compound of the présent Invention is of formula la or lb
Formula la
or a pharmaceutically acceptable sait thereof.
In one embodiment, R1 Is F or H, particularly F.
In one embodiment, the compound of the présent invention is of Formula la and R1 Is F.
In one embodiment, Ar is optionally substituted with one or more substituents selected from F, Cl, Br, CN, C1-C3 alkyl, C1-C3 fluoroalkyl or C1-C3 alkoxy.
In one embodiment, Ar is optionally substituted phenyl.
In one embodiment, Ar is optionally substituted pyridyl.
In one embodiment, Ar is optionally substituted pyrimldyl.
In one embodiment, Ar is optionally substituted pyrazinyl. In one embodiment, Ar is optionally substituted Imidazolyl.
In one embodiment, Ar is optionally substituted pyrazolyl. In one embodiment, Ar Is optionally substituted thiazolyl.
In one embodiment, Ar Is optionally substituted oxazolyl.
In one embodiment, Ar Is optionally substituted isoxazolyl.
In one embodiment, the compound is selected from the group consalsting of:
/7-(3-((2^35,5S)-6-amino-3,5-difluoro-2,5-dimethyl-2,3,4,5-tetrahydropyridin-2-yl)-4-fluorophenyl)-
5-fl uoroplcolinamide,
W-(3-((2R,3S,5S)-6-amino-3,5-difIuoro-2,5-dimethyl-2I314,5-tetrahydropyridin-2-y!)-4-fluorophenyl)-
5-methoxypyrazine-2-carboxamide, /7-(3-((2R,3S,5S)-6-amino-315-difluoro-2,5-dÎmethyl-2,3,4,5-tetrahydropyridin-2-yl)-4-fluorophenyl)5-methoxypicolinamide,
N-(3-((2R,3S,5R)-6-amino-3l5-difluoro-2,5-dimethyl-21314,5-tetrahydropyridin-2-yl)-4-fluorophenyl)5-fluoropicolinamide, /7-(3-((2R13S15R)-6-amino-315-difluoro-2,5-dirTiethyl-21314,5-tetrahydropyridin-2-yl)-4-fluorophenyl)5-methoxypyrazine-2-carboxamlde,
N-(3-((2R13S15R)-6-amino-3,5-difluoro-2,5-dimethyl-2,3,4,5-tetrahydropyridin-2-yl)-4-fluorophenyl)-
2-methyloxazole-4-carboxamide, /7-(3-((2R,3S,5R)-6-amino-3l5-difluoro-2,5-dimethyl-2,3,4,5-tetrahydropyridin-2-yf)-4-fIuorophenyl)5-methoxypicolinamlde,
N-(3-((2Rt3S,5R)-6-amino-3l5-difluoro-2,5-dimethyl-2,314,5-tetrahydropyridin-2-yl)-4-fluorophenyl)5-(methoxy-c/3)plcolinamlde,
N-(3-((2R,3S,5R)-6-amino-3,5-difluoro-2,5-dimethy!-2,314,5-tetrahydropyridin-2-^)-4-fluorophenyl)5-chloropîcolinamide, /7-(3-((2RI3S15R)-6-amino-315-difluoro-2,5-dimethyl-2,3,4,5-tetrahydropyridin-2-yl)-4-fluorophenyl)-
-methyl-1 H-lmldazole-2-carboxamide,
N-(3-((2R,3S,5R)-6-amino-3,5-difluoro-2,5-dimethyl-2,31415-tetrahydropyridin-2-yl)-4-fluorophenyl)5-(trifluoromethyl)pyrazine-2-carboxamide,
N-(3-((2R,3S,5R)-6-amino-3,5-difluoro-2,5-dimethyl-2,3,4,5-tetrahydropyridin-2-y1)-4-fluorophenyl)-
4- methylthiazole-2-carboxamÎde,
N-(3-((2R,3S,5R)-6-amino-3I5-difluoro-2,5-dimethyl-2,314,5-tetrahydropyridin-2-yl)-4-fluorophenyl)2-(difluoromethyl)oxazole-4-carboxamide1 /7-(3-{(2R13S15R)-6-amino-3,5-difluoro-2,5-dimethyl-2,3,4,5-tetrahydropyridin-2-yl)-4-fluorophenyl)1 -(difluoromethyl)-l H-pyrazole-3-carboxamide,
N-(3-((2R,3S,5R)-6-amino-3t5-difluoro-2,5-dimethyl-2,3,4>5-tetrahydropyridin-2-yl)-4-fluorophenyl)-
5- (difluoromethyl}pyrazine-2-carboxamide,
N-(3-((2R,3S,5R)-6-amino-3I5-difluoro-2,5-dimethyl-213,4,5-tetrahydropyridin-2-yl)-4-fluorophenyl)-
4-chlorobenzamide,
N-(3-((2R13S,5R}-6-amino-315-difluoro-2,5-dimethyl-2,3,4l5-tetrahydropyridin-2-yl)-4-fluorophenyl)-
5-cyanopicolinamide, /7-(3-((2/7,35,5F? }-6-amino-315-difluoro-2,5-dimethyl-213,4)5-tetrahydropyridin-2-yl)-4,5difluorophenyl)-5-(methoxy-cf3}picolinamide,
W-(3-((2R13S15S)-6’amino-315-difluoro-2,5-dimethyl-2,3,415-tetrahydropyridin-2-yl)-4-fluorophenyl)5-(methoxy-d3)picolinamide,
Mp-f^R.SS.SSJ-e-amino-S.S-djfl uoro-2,5-dimethyl-213,415-tetrahydropyridin-2-yl)-4-f)uorophenyl)5-(methoxy-d3)pyrazine-2-carboxamide,
N-(3-((2/?,3S,5S)-6-amino-3,5-difluoro-215-dimethy!-2131415-tetrahydropyridin-2-yl)-4-fluorophenyl)5-cyano-3-methylpicolinamide, /7-(3-((2F?13S,5S)-6-amino-3,5-difluoro-2,5-dimethyt-21314,5-tetrahydropyridin-2-yl)-4,5difluorophenyl)-5-(methoxy-d3)pIcolïnamide,
N-(3-((2/?,3R15S)-6-amino-3,5-difluoro-2,5-dimethyl-2,3,4,5-tetrahydropyridin-2-yl)-4-fluorophenyl)5-(methoxy-d3)pïcolinamide,
M-(3-((2F?,3S,5S)-6-amino-3I5-ciifluoro-215-dimethyl-2,3,4,5-tetrahydropyridin-2-yl}-4-fluorophenyl}5-bromoplcolinamide or a pharmaceutically acceptable sait thereof.
A separate embodiment Is directed to a pharmaceutical composition comprising a compound from the above list and a pharmaceutically acceptable carrier.
Another embodiment is directed to a method of treating a neurodegenerative or cognitive disorder comprising administering a therapeutically effective amount of a compound from the above list to patient ln need thereof.
Yet another embodiment Is directed to a use of a compound from the above list for the manufacture of a médicament for treating a neurodegenerative or cognitive disorder.
In one embodiment the Invention provides a compound from the above list for use in therapy. Yet another embodiment of the invention Is directed to a compound from the above listfor use in the treatment of a neurodegenerative or cognitive disorder.
DETAILED DESCRIPTION OFTHE INVENTION
The présent Invention Is based on the discovery that the compounds of Formula I are inhibitors of BACE1, and as such, are useful for the treatment of related disorders. Certain aspects of the Invention are explalned In greater detail below but this description is not Intended to be a detailed catalog of ail the different ways in which the Invention may be implemented, or ail the features that may be added to the instant Invention. Hence, the following spécification is Intended to illustrate some embodiments of the invention, and not to exhaustively specify all permutations, combinations and variations thereof.
As used herein, the term CpCe alkyl refers to a straight chalned or branched saturated hydrocarbon having from one to six carbon atoms inclusive. Examples of CrC« alkyl Include, but are 5 not limited to, methyl, ethyl, 1 -propyf, 2-propyl, 1-butyl, 2-butyl, 2-methyi-2-propyl, 2-methyM-propyl, n-pentyf and n-hexyl. Similarly, the term “C1-C3 alkyl refers to a straight chained or branched saturated hydrocarbon having from one to three carbon atoms Inclusive. Examples of C1-C3 Include, but are not limited to, methyl, ethyl and n-propyl.
Llkewise, the term Ci-C0 alkoxy refers to a straight chained or branched saturated alkoxy group having from one to six carbon atoms Inclusive with the open valency on the oxygen. Examples of CrCe alkoxy Include, but are not limited to, methoxy, ethoxy, n-butoxy, t-butoxy and n-hexy!oxy. The Ci-Ce alkoxy Is optionally substituted with one or more fluorine atoms.
As used herein, the term 'Ci-Ce fluoroalkyl refers to a straight chained or branched saturated hydrocarbon having from one to six carbon atoms inclusive substituted with one or more fluorine 15 atoms. Examples of Cj-Ce fluoroalkyl include, but are not limited to, trifluoromethyl, pentafluoroethyl,
-fluoroethyl, monofluoromethyl, difluoromethyl, 1,2-difluoroethyl and 3,4 difluorohexyl. Similarly, the term “C1-C3 fluoroalkyl refers to a straight chained or branched saturated hydrocarbon having from one to three carbon atoms inclusive substituted with one or more fluorine atoms per carbon atom.
The term halogen refers to fluorine, chlorine, bromine and iodine.
The term ‘CrCe alkenyl refers to a branched or unbranched alkenyl group having from two to six carbon atoms and one double bond, including but not limited to ethenyl, propenyl, and butenyl.
The term CrCe alkynyl shall mean a branched or unbranched alkynyl group having from two to six carbon atoms and one triple bond, including but not limited to ethynyl, propynyl and butynyl.
As used herein, the phrase effective amount when applied to a compound of the invention, 25 Is intended to dénoté an amount sufficient to cause an intended blological effect. The phrase “therapeutically effective amount’ when applied to a compound of the invention Is intended to dénoté an amount of the compound that is sufficient to ameliorate, palliate, stabilize, reverse, slow or delay the progression of a disorder or disease state, or of a symptom of the disorder or disease. In an embodiment, the method of the présent invention provides for administration of combinations of 30 compounds. In such Instances, the effective amount is the amount of the compound in said combination sufficient to cause the intended biological effect.
The term “treatment or “treating as used herein means ameliorating or reversing the progress or severity of a disease or disorder, or ameliorating or reversing one or more symptoms or side effects of such disease or disorder. “Treatment or “treating, as used herein, also means to 35 Inhibit or block, as in retard, arrest, restrain, Impede or obstruct, the progress of a system, condition or state of a disease or disorder. For purposes of this invention, “treatment or “treating further means an approach for obtalning bénéficiai or desired clinical results, where ‘bénéficiai or desired clinlcal results Include, without limitation, alleviation of a symptom, diminishment ofthe extent of a disorder or disease, stabilized (i.e., not worsening) disease or disorder state, delay or slowing of a disease or disorder state, amelioration or palliation of a disease or disorder state, and remission of a disease or disorder, whether partial or total.
The présent invention Is based on the discovery that compounds of Formula I are Inhibitors of BACE1, and as such, are useful for the treatment of disorders which pathologlcal characteristics comprise β-amyloid deposits and neurofibriilary tangles, such as neurodegenerative or cognitive disorders.
The compounds ofthe présent Invention are, as discussed above, expected to be useful In the treatment of Alzheimer’s disease due to their effects on β-amyloid deposits and neurofibriilary tangles. This includes familial Alzheimer’s disease where patients carry mutations on spécifie genes intimately involved In the production of Αβ peptide. It Is, however, important to note that aggregates of Αβ peptide Is not limited to familial Alzheimer’s disease but Is similariy an Important pathophyslological characteristics of the more common sporadic Alzheimer’s disease [Mol Cell Neurosci, 66,3-11,2015].
The compounds of the présent invention are also believed to be useful in the treatment of eariy-stage Alzheimer’s disease, i.e. disease stages where the biological and structural changes hâve started but the clinical manifestations of the disease hâve not yet become évident or are not yet well developed. Eariy-stage Alzheimer’s disease may, In fact, start years before any clinical sign of the disease becomes manifest. Eariy-stage Alzheimer’s disease includes prodromal Alzheimer’s disease, predinical Alzheimer’s disease and mild cognitive Impairment. Although mild cognitive impairment may be unrelated to Alzheimer’s disease It Is often a transitional stage to Alzheimer’s disease or due to Alzheimer’s disease. Predinical and prodromal Alzheimer’s disease are asymptomatic stages, and they are typically diagnosed by the presence of Alzheimer’s disease related biomarkers. In this context the compounds ofthe présent Invention are believed to be useful in slowing down the progression of eariy-stage Alzheimer’s disease, such as mild cognitive impairment to Alzheimer’s disease. The compounds ofthe présent Invention are also believed to be useful in the treatment of memory loss, attention defidts and dementia assodated with Alzheimer’s disease.
Other diseases, In addition to the continuum of Alzheimer’s disease, are characterized by βamytoid deposits and neurofibriilary tangles. This indudes e.g. Trisomy 21 also known as Down's syndrome. Patients suffering from Down’s syndrome hâve an extra chromosome 21 which chromosome contains the gene for the amyloid precursor protein (APP). The extra chromosome 21 leads to overexpression of APP, which leads to increased levels of Αβ peptide, which eventually causes the markedly increased risk of developing Alzheimer’s disease seen in Down's syndrome patients [Alzheimer's & Dementia, 11,700-709,201J. Cérébral amyloid angiopathy is also characterized by β-amyloid deposits and neurofibrillary tangles in blood vessels of the central nervous system [Pharmacol Reports, 67,195-203,2015] and 1s as such expected to be treatable with compounds of the présent Invention.
In one embodiment, the présent invention provides a method of treating a disease selected from Alzheimer's disease (familial or sporadic), preclinlcal Alzheimer’s disease, prodromal Alzheimer’s disease, mild cognitive impairment, Down's syndrome and cérébral amyloid angiopathy, the method comprising the administration of a therapeutically effective amount of a compound of Formula I or a pharmaceutically acceptable sait thereof to a patient In need thereof.
The présent Invention further provides a method of inhibiting BACE1 In a patient comprising administering to a patient In need thereof a therapeutically effective amount of a compound of Formula I or a pharmaceutically acceptable sait thereof.
The présent invention also provides a method of inhibiting β-secretase mediated cleavage of amyloid precursor protein comprising administering to a patient In need of such treatment a therapeutically effective amount a compound of Formula I or a pharmaceutically acceptable sait thereof.
In further embodiments, the présent invention provides the use of a compound of Formula I or a pharmaceutically acceptable sait thereof for the manufacture of a médicament for the treatment of disease selected from Alzheimer's disease (familial or sporadic), preclinical Alzheimer's disease, prodromal Alzheimer’s disease, mild cognitive Impairment, Down's syndrome or cérébral amyloid angiopathy.
The présent invention also provides the use of a compound of Formula I or a pharmaceutically acceptable sait thereof for the manufacture of a médicament for the inhibition of BACE1. The présent invention further provides the use of a compound of Formula I or a pharmaceutically acceptable sait thereof for the manufacture of a médicament for the Inhibition of production or accumulation of Αβ peptide.
In one embodiment, the présent Invention provides a compound of Formula I or a pharmaceutically acceptable sait thereof for use in a method for the treatment of a disease selected form Alzheimer’s disease (familial or sporadic), preclinical Alzheimer’s disease, prodromal Alzheimer’s disease, mild cognitive Impairment, Down’s syndrome or cérébral amyloid angiopathy.
In one embodiment, the présent Invention relates to a compound of Formula I or a pharmaceutically acceptable sait thereof for use In a method for inhibiting of BACE1 or in a method for inhibiting of production or accumulation of Αβ peptide.
In a further embodiment, the invention provides a pharmaceutical formulation adapted for any of the above treatments and uses.
In one embodiment, a mammal is a human.
In one embodiment, the patient is a human patient.
The présent invention also comprises salts ofthe présent compounds, typically, pharmaceutically acceptable salts. Such salts include pharmaceutically acceptable acid addition salts. Acid addition salts include salts of inorganic acids as well as organic acids.
Représentative examples of suitable inorganic acids Include hydrochloric, hydrobromic, hydroiodic, phosphoric, sulfuric, sulfamic, nitric acids and the like. Représentative examples of suitable organic acids include formic, acetic, trichloroacetic, trifluoroacetic, propionic, benzoic, cinnamic, citric, fumaric, glycolic, itaconic, lactic, methanesulfonîc, maleic, malic, malonic, mandelic, oxalic, picric, pyruvic, salicylic, sucdnic, methane sulfonic, ethanesulfonlc, tartane, ascorbic, pamoîc, bismethylene salicylic, ethanedisulfonic, gfuconic, citraconîc, aspartic, stearic, palmitic, ethylenediaminetetraacetic acid (EDTA), glycolic, p-amlnobenzoic, glutamic, benzenesulfonic, ptoluenesulfonlc acids, theophylline acetic acids, as well as the 8-halotheophyllines (for example, 8bromotheophylline and the like). Further examples of pharmaceutically acceptable inorganic or organic acid addition salts Include the pharmaceutically acceptable salts listed in S. M. Berge, et al., J. Pharm. Sci., 1977,66,2.
Furthermore, the compounds of this Invention may exist In unsolvated as well as in solvated forms with pharmaceutically acceptable solvents such as water, éthanol and the like.
The compounds of the présent Invention may hâve one or more asymmetric centres and ît is intended that any optical Isomers (i.e. enantiomers or diastereomers), as separated, pure or partially purified optical isomers and any mixtures thereof including racemic mixtures, i.e. a mixture of stereoisomeres, are included within the scope of the invention.
In this context is understood that when specifying the enantiomeric form, then the compound ls In enantiomeric excess, e.g. essentially In a pure form. Accordingly, one embodiment of the invention relates to a compound of the invention having an enantiomeric excess of at least 60%, at least 70%, at least 80%, at least 85%, at least 90%, at least 96%, preferably at least 98%.
Racemic forms may be resolved into the optical antipodes by known methods, for example, by séparation of diastereomeric salts thereof with an optically active acid, and liberating the optically active amine compound by treatment with a base. Séparation of such diastereomeric salts can be achieved, e.g. by fractional crystallization. The optically active acids suitable for this purpose may Include, but are not limited to d- or I- tartaric, mandelic or camphorsulfonic acids. Another method for resolving racemates into the optical antipodes ls based upon chromatography on an optically active matrix. The compounds of the présent Invention may also be resolved by the formation and chromatographie séparation of diastereomeric dérivatives from chiral derivatizing reagents, such as, chiral alkylating or acylating reagents, followed by cleavage of the chiral auxiliary. Any of the above methods may be applied either to résolve the optical antipodes of the compounds of the invention per se or to résolve the optical antipodes of synthetic Intermediates, which can then be converted by methods described herein Into the optically resolved final products which are the compounds of the invention.
Additional methods for the resolution of optical isomers, known to those skilled in the art, may be used. Such methods include those discussed by J. Jaques, A. Collet and S. Wilen in Enantiomers, Racemates, and Resolutions, John Wiley and Sons, New York, 1981. Optically active compounds can also be prepared from optically active starting materials.
The présent Invention further provides a pharmaceutical composition comprising a therapeutically effective amount of a compound of Formula I or a pharmaceutically acceptable sait thereof and a pharmaceutically acceptable carrier. The présent invention also provides a pharmaceutical composition comprising a therapeutically effective amount of one of the spécifie compounds disclosed in the Experimental Section and a pharmaceutically acceptable carrier.
The compounds of the invention may be administered alone or in combination with pharmaceutically acceptable carriers or excipients, In either single or multiple doses. The pharmaceutical compositions according to the invention may be formulated with pharmaceutically acceptable carriers or diluents as well as any other known adjuvants and excipients In accordance with conventional techniques such as those disclosed in Remington: The Science and Practice of Pharmacy, 22^ Edition, Gennaro, Ed., Mack Publishing Co., Easton, PA, 2013.
Pharmaceutical compositions for oral administration Include solid dosage forms such as capsules, tablets, dragees, pills, lozenges, powders and granules. Where appropriate, the compositions may be prepared with coatings such as enteric coatings or they may be formulated so as to provide controlled release of the active ingrédient such as sustained or prolonged release according to methods well known in the art. Liquid dosage forms for oral administration Include solutions, émulsions, suspensions, syrups and élixirs. Pharmaceutical compositions for parentéral administration include stérile aqueous and nonaqueous injectable solutions, dispersions, suspensions or émulsions as well as stérile powders to be reconstituted in stérile Injectable solutions or dispersions prior to use. Other suitable administration forms indude, but are not limited to, supposîtories, sprays, ointments, creams, gels, Inhalants, dermal patches and implants.
Typical oral dosages range from about 0.01 to about 100 mg/kg body weight per day.
The compounds of this invention are generally utilized as the free base or as a pharmaceutically acceptable sait thereof. A pharmaceutically acceptable sait of a compound of
Formula I Is prepared e.g. In a conventional manner by treating a solution or suspension of a free base of Formula I with a molar équivalent of a pharmaceutically acceptable acid. Représentative examples of suitable organic and inorganic acids are described above.
Suitable pharmaceutical carriers include Inert solid diluents or fitlers, stérile aqueous solutions and various organic solvents. Examples of solid carriers include lactose, terra alba, sucrose, cyclodextrin, talc, gelatin, agar, pectïn, acacia, magnésium stéarate, stearic acid and lower alkyl ethers of cellulose. Examples of liquid carriers include, but are not limited to, syrup, peanut oil, olive oil, phospholipids, fatty acids, fatty acid amines, polyoxyethylene and water. Similarly, the carrier or diluent may include any sustained release material known in the art, such as glyceryl monostearate or glyceryl distearate, alone or mixed with a wax. The pharmaceutical compositions formed by combining the compounds of Formula I or a pharmaceuticaly acceptable sait thereof and a pharmaceutically acceptable carrier are readily administered in a variety of dosage forms suitable for the disclosed routes of administration. The formulations may conveniently be presented in unit dosage form by methods known In the art of pharmacy.
If a solid carrier is used for oral administration, the préparation may be tabletted, placed In a hard gelatin capsule In powder or pellet form or it may be in the form of a troche or lozenge. The amount of solid carrier will vary widely but will range from about 25 mg to about 1 g per dosage unit If a liquid carrier is used, the préparation may be In the form of a syrup, émulsion, soft gelatin capsule or stérile injectable liquid such as an aqueous or non-aqueous liquid suspension or solution.
The compounds of the présent invention are as demonstrated in the examples potent inhibitors of BACE1 and capable of lowering the level of Αβ peptide in rat brain and plasma, and said compounds are thus believed to be useful in the treatment of neurodegenerative and cognitive disorders which pathological characteristics comprise Αβ deposits and neurofibrilary tangles, such as e.g. Alzheimeris disease. It may be bénéficiai to combine a compound of the présent invention with another treatment paradigm useful in the treatment of such disease, e.g. Alzheimeris disease.
Tau proteins are abundant in neurons. Tau proteins are soluble and highly phosphorylation labile and bind to tubulin providing régulation and modulation of tubulin assembly, i.e. eventually the microtubular structure and stability. Tau proteins can only assocîate with tubulin In the most dephosphorylated state, and phosphorylation/de-phosphorylation acts as a switch controlling the tubulin association. Phosphoryiated Tau constïtutes an Important part of the neurofibrillary tangles which are one of the hallmarks of Alzheimer’s disease. The so-called Tau hypothesis suggests targeting these pathological tangles, a main constituent of which is phosphoryiated Tau protein, as a treatment paradigm for Alzheimeris disease. In particular, Immunothérapies, both active and passive, hâve been suggested as a way to target Tau neurofibrillary tangles. In active immunotherapy, a pathogenic antigen is injected Into the patient and the innate immune system elicits an Immune response. This triggers the maturation of B-cells generating high affinity antibodies against the administered antigen. In a passive immunotherapy, the triggering of the innate Immune System is circumvented by Infusing a spécifie antibody against the antigen. It is suggested that the inhérent clearance system then removes antibody bound ligand. Substantial evidence for the efficacy of both active and passive immunotherapy targeting phosphoryfated Tau protein as a treatment for Alzheimer’s disease exists [Alzheimer’s &Dementia, 7(4, suppl) S480481; J Neurosd 30,16559-16556, 2010; J Neurosd, 27, 9115-9129, 2007].
In one embodiment the invention provides a method for the treatment of a neurodegenerative or cognitive disorder, e.g. Alzheimer’s disease, the method comprising the administration of a therapeutically effect amount of two components (1) a compound of Formula I or a pharmaceutically acceptable sait thereof and (2) a compound useful in active or passive Tau immunotherapy to a patient in need thereof. Said compound useful in passive Tau immunotherapy may be an antibody directed against phosphorylated Tau protein. Said compound useful in active Tau immunotherapy may be a fragment of the Tau protein amino acid sequence which upon Injection in a patient elicïts génération of an anti-phosphorylated Tau protein antibody In said patient. The administration according to this embodiment of the invention may be simultaneous, or there may be a time gap between the administration of the two components.
In one embodiment, the Invention relates to the use of a compound of Formula I or a pharmaceutically acceptable sait thereof and a compound useful in active or passive Tau immunotherapy in the manufacture of a médicament for the treatment of neurodegenerative or cognitive disorder, e.g. Alzheimer’s disease.
In one embodiment, the invention provides a compound of Formula I or a pharmaceutically acceptable sait thereof and a compound useful in active or passive Tau immunotherapy for use in a method for the treatment of a neurodegenerative or cognitive disorder, e.g. Alzheimer’s disease.
In one embodiment, the invention provides a pharmaceutical composition comprising a compound of Formula I or a pharmaceutically acceptable sait thereof and a compound useful in active or passive Tau immunotherapy and a pharmaceutically acceptable carrier.
Another paradigm to treat neurodegenerative and cognitive disorder, e.g. Alzheimer’s disease is to target the Αβ peptides. It has been suggested that this can be achieved by either passive or active immunotherapy targeting Αβ peptides [J Neurosd, 34,11621-11630,2014; J Neurosd 33,4923-4934,2013]. In combination with compounds of the présent invention this would attempt to target the same pathological mechanism via two different routes. Anti-Αβ antibodies (either Injected directly into the patient or generated in the patient as a resuit of active immunotherapy) clear Αβ deposits in the brain, while further accumulation of Αβ peptide is blocked or reduced by the compounds of the présent invention.
In one embodiment the Invention provides a method for the treatment of a neurodegenerative or cognitive disorder, e.g. Alzheimer’s disease, the method comprising the administration of a therapeutically effect amount of two components (1) a compound of Formula I or a pharmaceutically acceptable sait thereof and (2) a compound useful In active or passive Αβ peptide immunotherapy to a patient in need thereof. Said compound useful In passive Αβ peptide immunotherapy may be an anti-Αβ peptide antibody, such as gantenerumab, solanezumab, aducanumab or crenezumab. Said compound useful in active Αβ peptide immunotherapy may be a fragment of the Αβ peptide amino acid sequence which upon Injection Into a patient elicits anti-Αβ peptide antibodies In said patient. The administration according to this embodiment of the Invention may be simultaneous, or there may be a time gap between the administration of the two components.
In one embodiment, the Invention relates to the use of a compound of Formula I or a pharmaceutically acceptable sait thereof and a compound useful in active or passive Αβ peptide immunotherapy in the manufacture of a médicament for the treatment of neurodegenerative or cognitive disorder, e.g. Alzheimer’s disease.
In one embodiment, the invention provides a compound of Formula I or a pharmaceutically acceptable sait thereof and a compound useful In active or passive Αβ peptide immunotherapy for use in a method for the treatment of a neurodegenerative or cognitive disorder, e.g. Alzheimer’s disease.
In one embodiment, the invention provides a pharmaceutical composition comprising a compound of Formula I or a pharmaceutically acceptable sait thereof and a compound useful in active or passive Αβ peptide immunotherapy and a pharmaceutically acceptable carrier.
The NMDA (N-Methyl-D-Aspartate) receptor antagonist memantine and the acétylcholine esterase Inhibitors donepezil, rivastigmine and galantamine are approved drugs for the treatment of Alzheimer’s disease.
In one embodiment the invention provides a method for the treatment of a neurodegenerative or cognitive disorder, e.g. Alzheimer’s disease, the method comprising the administration of a therapeutically effect amount of two components (1) a compound of Formula I or a pharmaceutically acceptable sait thereof and (2) an NMDA receptor antagonist or an acétylcholine esterase inhibitor to a patient In need thereof. The administration according to this embodiment of the invention may be simultaneous, or there may be a time gap between the administration of the two components.
In one embodiment, the Invention relates to the use of a compound of Formula I or a pharmaceutically acceptable sait thereof and an NMDA receptor antagonist or an acétylcholine esterase Inhibitor in the manufacture of a médicament for the treatment of neurodegenerative or cognitive disorder, e.g. Alzheimer’s disease.
In one embodiment, the Invention provides a compound of Formula I or a pharmaceutically acceptable sait thereof and an NMDA receptor antagonist or an acétylcholine esterase inhibitor for 5 use in a method for the treatment of a neurodegenerative or cognitive disorder, e.g. Alzheimer’s disease.
In one embodiment, the invention provides a pharmaceutical composition comprising a compound of Formula I or a pharmaceutically acceptable sait thereof and an NMDA receptor antagonist or an acétylcholine esterase inhibitor and a pharmaceutically acceptable carrier.
Selzures or epileptiform activity are also associated with Alzheimer’s disease, including early stages of Alzheimer’s disease, and treatment of said epileptic activity, which seeks to normalise hippocampal hyperactivity, may form part of an Alzheimer’s disease treatment paradigm [JAMA Neurol, 70,1158-1166, 2013; J Neurosci Res, 93, 454,465,2015; Neuron, 74,647-474, 2012; Neurepsychpharm, 35,1016-1025,2010; CNS Neurosci Ther, 19,871-881,2013]. Useful antiepîleptics include NMDA receptor antagonists and ion channel modulators, such as topiramate, levetiracetam and lamotrigine.
In one embodiment the Invention provides a method for the treatment of a neurodegenerative or cognitive disorder, e.g. Alzheimer’s disease, the method comprising the administration of a therapeutically effect amount of two components (1) a compound of Formula I or 20 a pharmaceutically acceptable sait thereof and (2) an antiepileptic to a patient In need thereof. The administration according to this embodiment of the invention may be slmultaneous, or there may be a time gap between the administration ofthe two components.
In one embodiment, the invention relates to the use of a compound of Formula I or a pharmaceutically acceptable sait thereof and an antiepileptic In the manufacture of a médicament 25 for the treatment of neurodegenerative or cognitive disorder, e.g. Alzheimer’s disease.
In one embodiment, the invention provides a compound of Formula I or a pharmaceutically acceptable sait thereof and an antiepileptic for use in a method for the treatment of a neurodegenerative or cognitive disorder, e.g. Alzheimer’s disease.
In one embodiment, the invention provides a pharmaceutical composition comprising a 30 compound of Formula I or a pharmaceutically acceptable sait thereof and an antiepileptic and a pharmaceutically acceptable carrier.
Emerging evidence suggests that inflammation has a causal rôle in Alzheimer’s disease pathogenesis and that neuroinflammation is not a passive system activated by emerging β-amyloid deposits and neurofibrilary tangles, but also contributes to pathogenesis itself [Lancet Neurol, 14,
388-405,2015; JAIz Dis, 44, 385-396,2015; Neurol, 84, 2161-2168,2015], It follows from this that anti-inflammatory drugs, such as NSAID (non-steriod anti-inflammatory drugs), TNFa inhibitors, such as etanercept and p38 MAP kinase Inhibitors, such as VX-745 (5-(2,6-Dichlorophenyl)-2-((214difluorophenyl)thio)-6H-pyrimido[1,6-b]pyridazin-6-one) may be useful In the treatment of Alzheimer's disease.
In one embodiment the invention provides a method for the treatment of a neurodegenerative or cognitive disorder, e.g. Alzheimer’s disease, the method comprising the administration of a therapeutically effect amount of two components (1) a compound of Formula I or a pharmaceutically acceptable sait thereof and (2) an anti-inflammatory drug to a patient in need thereof. The administration according to this embodiment of the invention may be simultaneous, or o there may be a time gap between the administration of the two components.
In one embodiment, the invention relates to the use of a compound of Formula I or a pharmaceutically acceptable sait thereof and anti-inflammatory drug in the manufacture of a médicament for the treatment of neurodegenerative or cognitive disorder, e.g. Alzheimer’s disease.
In one embodiment, the invention provides a compound of Formula I or a pharmaceutically 15 acceptable sait thereof and an anti-inflammatory drug for use In a method for the treatment of a neurodegenerative or cognitive disorder, e.g. Alzheimer's disease.
In one embodiment, the invention provides a pharmaceutical composition comprising a compound of Formula I or a pharmaceutically acceptable sait thereof and an anti-inflammatory drug and a pharmaceutically acceptable carrier.
In addition, efficacy in the treatment of Alzheimer’s disease has been demonstrated for Tau protein aggregation Inhibitors, such as TRX-0237, also known as Methylene Blue, and SSRIs (Sélective Serotonin Reuptake Inhibitor), such as citalopram [Behav Pharmacol, 26, 353-368, 2015; Sc/ Transi Med, 6(236re4), 2014].
In one embodiment the invention provides a method for the treatment of a neurodegenerative or cognitive disorder, e.g. Alzheimer’s disease, the method comprising the administration of a therapeutically effect amount of two components (1) a compound of Formula I or a pharmaceutically acceptable sait thereof and (2) Tau protein aggregation inhibitor or an SSRI to a patient in need thereof. The administration according to this embodiment of the invention may be simultaneous, or there may be a time gap between the administration of the two components.
In one embodiment, the Invention relates to the use of a compound of Formula I or a pharmaceutically acceptable sait thereof and a Tau protein aggregation inhibitor or an SSRI In the manufacture of a médicament for the treatment of neurodegenerative or cognitive disorder, e.g. Alzheimer’s disease.
In one embodiment, the Invention provides a compound of Formula I or a pharmaceutically acceptable sait thereof and a Tau protein aggregation Inhibitor or an SSRI drug for use in a method for the treatment of a neurodegenerative or cognitive disorder, e.g. Alzheimer’s disease.
In one embodiment, the invention provides a pharmaceutical composition comprising a compound of Formula I or a pharmaceutically acceptable sait thereof and a Tau protein aggregation inhibitor or an SSRI drug and a pharmaceutically acceptable carrier.
EXPERIMENTAL SECTION
The compounds ofthe présent Invention of the general formula I, wherein R1and Ar are as defined above can be prepared by the methods outlined in the following reaction schemes 1-7 and in the examples. In the described methods, It Is possible to make use of variants or modifications, which are themselves known to chemists skilled In the art or could be apparent to the person of ordinary skill in this art. Furthermore, other methods for preparing compounds of the invention will be readily apparent to the person skilled In the art in light of the following reaction schemes and examples.
For example, Scheme 2 describe the use of sélective protecting groups during the synthesis of the compounds of the invention. One skilled in the art would be able to select the appropriate protecting group for a particular reaction. Moreover, it may be necessary to incorporate protection and deprotectïon strategies for substituents such as amino, amido, keto and hydroxyl groups in the synthetic methods described below to synthesize the compounds of Formula I. Methods for protection and deprotection of such groups are well known in the art, and may be found in T. Green, et al., Protective Groups in Organic Synthesis, 1991,21*1 Edition, John Wiley & Sons, New York.
For compounds, which can exist as a mixture or equilibrium between two or more tautomers, only one tautomer is represented In the schemes, although it may not be the most stable tautomer. For compounds, which can extst in enantiomeric, stereoisomeric or géométrie isomeric forms their géométrie configuration Is specified; otherwise the structure represents a mixture of stereoisomers.
Analytical LC-MS data was obtained using the following methods.
Method A:
LC-MS was run on Waters Aquity UPLC-MS consisting of Waters Aquity including column manager, binary solvent manager, sample organizer, PDA detector (operating at 254 nm), ELS détecter, and SQ-MS equipped with APPI-source operating in positive Ion mode.
LC-conditions: The column was Acquity UPLC BEH C18 1.7pm ; 2.1x150mm operating at 60’C with 0.6 ml/min of a binary gradient consisting of water + 0,05 % trifluoroacetic acid (A) and acetonitrile + 5% water + 0.03 % trifluoroacetic acid (B). Gradient: 0.00 min: 10% B; 3.00 min: 99.9% B; 3.01 min: 10% B; 3.60 min: 10% B. Total run time: 3.60 min.
Method B:
LC-MS was run on Waters Acquity UPLC-MS consisting of Waters Acquity including column manager, binary solvent manager, sample organizer, PDA detector (operating at 254 nm), ELS detector, and TQ-MS equipped with APPI-source operating In positive Ion mode.
LC-conditions: The column was Acquity UPLC BEH C181.7pm ; 2.1x50mm operating at 60°C with
1.2 ml/min of a binary gradient consisting of water + 0.05 % trifluoroacetic add (A) and acetonitrile + 5% water + 0.05 % trifluoroacetic acid (B). Gradient: 0.00 min: 10% B; 1.00 min: 100% B; 1.01 min: 10% B; 1.15 min: 10% B. Total run time: 1.15 min.
1H NMR spectra were recorded at 600 MHz on a Broker Avance AV-lll-600 instrument orat 400 MHz on a Broker Avance AV-lll-400 Instrument or a Varian 400 instrument. Chemical shift values are expressed In ppm-values relative. The following abbreviations are used for multiplicity of NMR signais: s = singlet, d = doublet, t = triplet, q = quartet, dd - double doublet, ddd = double double doublet, dt = double triplet, br = broad, and m = multiplet.
Compoùnds of the general formulae Via and Vlb may be prepared as shown In Scheme 1. Scheme 1
O Λ H2N'S,'tBu 4- Brv-COjR* | T T +
U i» a0 qA IV v HN'S*O HN'S*O
% — R,1. ----- /^kxC02RJ * R1 Via QnïCOlR! R1 Vlb
where R1 is as defined under formula I and R2 is as an alkyl group such as methyl or ethyl. Compounds ofthe general formula IV (Scheme 1) may be prepared by reacting compounds of formula II with a sulfinamide such as III In the presence of a Lewis acid/drylng agent such as titanium tetraethoxide. Treatment of compounds of the formula IV with compounds of the general formula V such as ethyl bromofiuoroacetate In the presence of 2n powder or In the presence of diethyl zinc and trls(triphenylphosphine)rhodium(l) chloride gives compounds of the general formulae Via and Vlb which can be separated by chromatography.
Compounds of the general formulae Xlla and Xllb may be prepared as shown in Scheme 2.
Scheme 2
where R2 and R3 are alkyl groups such as methyl or ethyl and R4 Is protecting group such as tertbutoxy carbonyl.
Compounds of formula VII (Scheme 2) may be prepared by treatment of compounds of formula Via with a reducing agent such as diisobutyialuminium hydride. In some cases, compound VII might be In equilibrium with the hydrate form. Treatmentofcompounds ofthe general formula
VII with conditions such as ethyl 2-(diethoxyphosphoryl)-2-fluoroacetate In the presence of lithium chloride and a base such as Λ/,Ν-diisopropylethylamine gives compounds of the general formula
VIII as either the E or Z form or a mixture thereof. Compounds of the general formula IX are obtained by hydrogénation of compounds of the general formula VI11 In the presence of a catalyst such as palladium on carbon. Compounds of the general formula X are obtained by treatment of compounds of the general formula IX with an acid such as hydrochloric acid in methanol followed by heating the Intermediate In a higher boiling solvent such as toluene or xylenes In the presence of a base such as triethylamlne. Compounds of the general formula XI are obtained by treatment of compounds ofthe general formula X with dî-fert-buty! dicarbonate in the presence of a catalytic amount of N,W-dimethyl-4-amino-pyridine. Compounds ofthe general formulae Xlla and Xllb are obtained by treatment of compounds of the general formula XI with a base such as lithium hexamethyldisilazide followed by alkylation with an alkythalide. The same procedures described above can also be used for the synthesis of compounds of the general formulae XI le and XI Id starting from Vlb.
As an exampîe and wherein R1 is fluorine In the 2-position ofthe phenyl ring orwherin the phenyl ring Is substituted with two fluorines In the 2- and 3-positions, compound of the general formula XVIIa may be prepared as shown In Scheme 3.
Scheme 3
XVa XVla XVIIa where R4 is a protecting group such as tert-butoxy carbonyl.
Compounds ofthe general formula Xllla are obtained by treating compounds of the general formula Xlla with nitric acid. This will both deprotect the amide moiety and nitrate the benzene ring in the indicated position. Réduction of the nitro group of compounds of the general formula Xllla followed by protection of the formed aniline moiety gives compounds of the general formula XVa. Treatment of compounds of the general formula XVa with a reagent such as Lawesson’s reagent (2,4-bis(4-methoxyphenyl)-1,3,2,4-dithÎadiphosphetane-2,4-disulfide) gives compounds ofthe general formula XVla. Deprotection of XVla under conditions such as trifluoroacetic acid In dichloromethane gives compound XVIIa. Altematively, the order of rections can be changed and compounds of the general formula Xllla can be reacted with a reagent such as Lawesson’s reagent to give compounds of the general formula XXIa, which after réduction of the nitro group also gives compounds of the general formula XVIIa (Scheme 4).
Scheme 4
As an example and wherein R1 is fluorine in the ortho position of the phenyl ring or wherin the phenyl ring Is substituted with two fluorines in the 2- and 3-positîons, compound of the general 5 formula XVIlb (Scheme 5) may be prepared by the same procedures as shown In Scheme 3 and 4 but starting from compound of general formula Xllb. Likewise, the same procedures can be used for the synthesis of compounds of the general formulas XVIIc and XVIId starting from Xîlc and Xlld, repectively.
where R4 Is a protecting group such as tert-butoxy carbonyl.
Compounds of the general formula XIIla may also be prepared as shown in Scheme 6. Starting from nitro substituted acetophenones of general formula llb, compounds of the general formula VIII may 20 be prepared as described in Schemes 1 and 2. Compounds of the general formula IX may be obtained by sélective réduction of the olefin moiety of compounds of the general formula VIII. Compounds ofthe general formula Xllla may be prepared as described for compounds of general formula Xlla In Scheme 2. Likewise, compounds of general formulae Xlllb, XI Ile and Xllld may also 5 be préparé as shown in Scheme 6 starting from nitro substituted acetophenones of general formula Ilb.
Xllla where R1 is as defined under formula I and R3 Is an alkyl group such as methyl or ethyl
Compounds of the general formula I may be prepared as shown In Scheme 7. Scheme 7
where R1 and Ar are as defined under formula I.
Compounds ofthe general formula XX (Scheme 7) may be prepared by reacting compounds of the general formula XVII with a carboxylic acid chloride of general formula XVIII or by reaction with a carboxylic acid of general formula XIX using procedures known to chemists skilled in the art. Treatment of compounds of the general formula XX with ammonia gives compounds of the généra! formula I. In some cases, the addition of and oxidizing reagent such as fert-butyl hydroperoxide might be necessary to facilitate the reaction.
PREPARATION OF INTERMEDIATES
INTERMEDIATE: (R)-N-[1-(2-fluorophenyl)ethylidene]-2-methyl-propane-2-sulfinamide
To a solution of 1-(2-fluorophenyl)ethanone (100 g, 723.9 mmol) and (R)-2-methylpropane-
2-sulfinamide (105.28 g, 868.68 mmol) in THF (2.00 L) was added tetraethoxytitanium (330.26 g, 1.45 mol).The solution was warmed to 80*C and stirred for 18 hours. The reaction was quenched by water (500 mL), then extracted with ethyl acetate (500 mL, 4 times). The combined organic phases were washed with brine (500 mL), dried over anhydrous NaîSO4, filtered and concentrated in vacuo. The residue was purified by silica gel chromatography (column height: 250 mm, diameter. 100 mm, 100-200 mesh silica gel, petroleum ether/ethyl acetate=10/1,5/1) to give (R)-N-[1-(2fluorophenyl)ethylidene]-2-methyl-propane-2-sulfinamide (150 g, 86% yield).
INTERMEDIATES: Ethyl (2R,3R)-3-n(R)-terf-butylsulfiny!]amino]-2-fluoro-3-(2-fluorophenyl)butanoate and ethyl (2S,3R)-3-{[(R)-fert-butylsulfinyl]amÎno]-2-fluoro-3-(2-fluorophenyl)butanoate
To a suspension of (R)-N-[1-(2-fluoropheny!)ethylidene]-2-methy!-propane-2-sulfinamide (20. g,
82.9 mmol), ethyl 2-bromo-2-fluoro-acetate (30.66 g, 165.8 mmol) and Rh(PPh3)3CI (2.30 g, 2.49 mmol) in anhydrous THF (400 mL) was added Et2Zn (1M In THF, 249 mL) dropwise at 0°C over a period of 10 minutes under argon during which the température was maintained below 5ÇC. The reaction mixture was warmed to 30’C and stirred at 30*C for 18 hours. The reaction was quenched with water (150 mL), filtered and then extracted with ethyl acetate (3 * 500 mL). The combined organic phases were washed with saturated brine (40 mL), dried over anhydrous Na^C^, filtered and concentrated in vacuo. The residue was purified by flash chromatography on silica gel (petroleum ether ethyl acetate = 100:1 to 3:1) to give ethyl (2R,3R>3-[[(R)-tert-butylsu1finyl]amino]2-fluoro-3-(2-fluorophenyl)butanoate (11.2 g, 39% yield) and an Impure fraction containg (2S,3R)-3[[(R)-fert-butylsulfinyl]amlno}-2-fluoro-3-(2-fluorophenyl)butanoate. After preperative HPLC purification of the latter fraction, (2S,3R)-3-[[(R)-terf-butyisulfinyl]amino]-2-fluoro-3-(2fluorophenyljbutanoate was isolated (0.8 g, 3% yield)..
Ethyl (2R,3R)-3-(((R)-tert-butylsulfiny!)amino)-3-(2,3-difluorophenyl)-2-fluorobutanoate was prepared In a similar way starting from (R)-N-[1-(2,3-difluorophenyl)ethytidene]-2-methy1-propane-2sulfinamide
INTERMEDIATE: Ethyl (4S,5R)-5-[[(R)-fert-butylsulfinyl]amino]-2,4-dÎfluoro-5-(2-fluorophenyl)hex2-enoate
To a solution of ethyl (2R,3R)-3-[[(R)-fert-buty!sulfinyl]amino]-2-fluoro-3-(2-fluorophenyl)butanoate (10.0 g, 28.8 mmol) In THF (200 mL) was added DIBAL-H (diisobutylaluminium hydride) (1M in THF, 143.9 mL) dropwise at -78C over a period of 30 minutes under N2. The yellow reaction solution was stirred at -78’C for 3.5 hours. The reaction was quenched with water (200 mL), filtered and extracted with ethyl acetate (200 mL, 4 times). The combined organic phases were washed with saturated brine (200 mL), dried over anhydrous Na2SO4, filtered and concentrated in vacuo to give the crude product (R)-N-((2R,3R)-3-fluoro-2-(2-fluorophenyl)-4oxobutan-2-yl)-2-methylpropane-2-sulfinamide (8.0 g, crude). To a suspension of ethyl 2diethoxyphosphoryl-2-fluoro-acetate (5.13 g, 21.2 mmol), DIPEA (N./V-diisopropylethylamlne) (1.18 g, 9.1 mmol) and LiCI (386 mg, 9.1 mmol) In acetonitrile (150 mL) was added a solution of (R)-N((2R,3R)-3-fluoro-2-(2-fluorophenyl)-4-oxobutan-2-yl)-2-methylpropane-2-sulfinamlde (2.30 g, 7.58 mmol) in acetonitrile (20 mL) dropwise at 0°C over a period of 10 minutes under N2. The suspension was warmed to 25’C stirred for 18 hours. The reaction was concentrated in vacuo, the residue was extracted with ethyl acetate (100 mL, 3 times). The combined organic phases were washed with saturated brine (100 mL), dried over anhydrous Na2SO4, filtered and concentrated in vacuo. The residue was purified by flash chromatography on silica gel (petroleum ether/ethyl acetate = 5:1,1:1) to give ethyl (4S,5R)-5-[[(R)-tert-butylsulfinyl]amino]-2,4-difluoro-5-(2fluorophenyl)hex-2-enoate (3.44 g, 8.79 mmol, 49.8% yield).
Ethyl (4R,5R)-5-[[(R)-fert-butylsulfinyl]amino]-2,4-difluoro-5-(2-fluorophenyl)hex-2-enoate was prepared in a similar way starting from (2S,3R)-3-[[(R}-ferf-butylsulfinyl]amlno]-2-fluoro-3-(2fluorophenyljbutanoate
Ethyl (4S,5R)-5-[[(R)-fert-butylsulfinyl]amino]-2,4-difluoro-5-(2,3-difluorophenyl)hex-2-enoate was prepared in a similar way starting from ethyl (2R,3R)-3-(((R)-tert-butylsulfinyl)amino)-3-(2,3difluorophenyl)-2-fluorobutanoate
INTERMEDIATE: Ethyl (4S,5R)-5-[[(R)-ferf-butylsulfinyî]amino]-2,4-difluoro-5-(2-fluorophenyl)hexanoate
To a solution of ethyl (4S,5R)-5-[[{R)-fert-butyîsulfinyl]amino]-2,4-difIuoro-5-(2-fluorophenyl)hex2-enoate (13.77 g, 35.18 mmol) In ethyl acetate (500 mL) was added Pd/C (10%, 2.00 g, wet). The black suspension was degassed under vacuum and purged with H2 several times. The mixture was stirred under H2 (50 psi) at 3O0C for 18 hours. The suspension was filtered and the filter was concentrated to give product of ethyl (4S,5R)-5-[[(R)-tert-butylsulfinyi]am!no]-2,4-difluoro-5-(2fluorophenyl)hexanoate (10.5 g, 75.9% yield).
Ethyl (4R,5R)-5-[[(R)-fert-butylsulfinyl]amino]-2,4-difluoro-5-(2-fluorophenyl)hexanoate was prepared In a similar way starting from ethyl (4R,5R)-5-[[(R)-fert-butylsulfinyl]amino]-2,4-difluoro-5(2-fluorophenyl)hex-2-enoate
Ethyl (4S,5R)-5-n(R)-ferf-butylsulfinyl]amino]-2,4-difluoro-5-(2,3-difluorophenyl)hexanoate was prepared In a similar way starting from ethyl (4S,5R)-5-[[(R)-tert-buty1sulfinyl]amino]-2,4-difluoro-5(2,3-difluorophenyl)hex-2-enoate
INTERMEDIATE: (5S,6R)-3,5-difluoro-6-(2-fluorophenyl)-6-methylpiperidin-2-one
To a solution of ethyl (4S,5R)-5-[[(R)-fert-butylsulfinyl]amlno]-2,4-difluoro-5-(2-fluorophenyl)hexanoate (10.50 g, 26.69 mmol) in MeOH (100 mL) was added HCI/MeOH (4 M, 50 mL) in one portion at 30’C under N2. The colorless solution was stirred at 30’C for 2 hours. The solution was concentrated in vacuum to give crude ethyl (4S,5S)-5-amino-2,4-difluoro-5-(2fluorophenyl)hexanoate (6.50 g, 21.35 mmol, 80% yield) which was dissolved in toluene (100 mL) and triethylamine (2.19 g, 21.64 mmol) was added. The colorless solution was stirred at 110’C for 18 hours. The reaction was concentrated in vacuo, the residue was purified by flash chromatography on silica gel (petroleum ether ethyl acetate =3:1-1:1) to give (5S,6R)-3,5-difluoro-
6-(2-fluorophenyl)-6-methyl-piperidin-2-one (4.50 g, 17.6 mmol, 78.2% yield). (5R,6R)-3,5-difluoro-6-(2-fluorophenyl)-6-methylpiperidin-2-one was prepared In a similar way starting from (4R,5R)-5-[[(R)-tert-butylsulfinyl]amino]-2,4-difluoro-5-(2-fluorophenyl)hexanoate. (5S,6R)-3,5-difluoro-6-(2,3-difluorophenyt)-6-methylpïperidin-2-one was prepared in a similar way starting from (4S,5R)-5-n(R)-tert'butylsulfinyl]amino]-2>4-difluoro-5-(2,3-difluorophenyl)hexanoate
INTERMEDIATE: tert-Butyi (2R,3S)-3,5-difluoro-2-(2-fluorophenyl)-2-methy!-6-oxo-piperidine• 1-carboxylate
O >
O
To a solution of (5S,6R)-3,5-difluoro-6-(2-fluorophenyl)-6-methyl-piperidin-2-one (4.50 g, 18.50 mmol) and di-tert-butyl dicarbonate (8.08 g, 37.0 mmol) in THF (100 mL) was added N,Ndimethylpyridin-4-amine (113 mg, 925 pmol) in one portion at 25’C under N2. The colorless solution was stirred at 25*C for 48 hours. The solution was quenched with water (100 mL) and extracted with ethyl acetate (100 mL, 3 times). The combined organic phases were washed with saturated brine (50 mL), dried with anhydrous Na^CL, filtered and concentrated In vacuum. The residue was purified by flash chromatography on silica gel (petroleum ether/ethyl acetate=20/1, 5/1) to give tertbutyl (2R,3S)-3,5-difluoro-2-(2-fluorophenyl)-2-methy1-6-oxo-piperidine-1-carboxylate (4.70 g, 13.0 mmol, 70.3% yield).
tert-Butyi (2R,3R)-3,5-difluoro-2-(2-fluorophenyl)-2-methyl-6-oxo-piperidine-1-carboxylate was prepared in a similar way starting from (5R,6R)-3,5-difluoro-6-(2-fluoiOphenyl)-6-methylpiperidin-2one.
tert-Butyi (2R,3S)-3l5-difiuoro-2-(2,3-difluorophenyl)-2-methyt-6-oxo-piperidine-1-carboxylate was prepared In a similar way starting from (5S,6R)-3,5-difluoro-6-(2,3-difluorophenyl)-6methylpiperidin-2-one
INTERMEDIATES: tert-butyl (2R,3S,5R)-315-difluoro-2-(2-fluorophenyl)-2,5-dimethyl-6-oxopiperidine-1-carboxylate and tert-butyl (2R,3S,5S)-315-difluoro-2-(2-fluorophenyl)-2,5-dimethyl-6oxo-piperidine-1-carboxylate
To a solution of tert-butyl (2/?,3S)-3,5-difluoro-2-(2-fluorophenyl)-2-methyl-6-oxo-plperidÎne1-carboxylate (1.50 g, 4.37 mmol) In THF (30 mL) was added LIHMDS (Lithium bis(trimethylsilyl)amide) (1 M, 8.74 mL) dropwise at -78*C over a period of 10 minutes under N2. The solution was stirred at -78’C for 1 hour, then to the solution was added iodomethane (3.10 g,
21.9 mmol). The reaction solution was stirred at -78eC for another 45 minutes. Then the solution was allowed to be warmed to 25*C and stirred for 18 hours. The reaction was slowly quenched by Ice and then extracted with ethyl acetate (30 mL, 3 times). The combined organic phases were washed with saturated brine (30 mL, twice), dried over anhydrous Na^Oi, filtered and concentrated in vacuo. The residue was purified by flash chromatography on silica gel (petroleum etherrethyl acetate = 15:1,10:1) to give the products tert-butyl (2R,3S,5R)-3,5-difluoro-2-(2fluorophenyl)-2,5-dimethyl-6-oxo-plperidine-1-carboxylate (550 mg, 1.54 mmol, 35.2% yield) and tert-butyl (2R,3S,5S)-3,5-difluoro-2-(2-fluorophenyl)-2,5-dimethyl-6-oxo-piperidine-1-carboxylate (600 mg, 1.68 mmol, 38.4% yield).
tert-butyl (2R,3R,5S)-3,5-difluoro-2-(2-fluorophenyl)-2,5-dimethy1-6-oxo-piperidine-1-carboxylate was prepared In a similar way starting from tert-butyl (2R,3R)-3,5-difluoro-2-(2-fluorophenyl)-2methyl-6-oxo-plperidine-1 -carboxylate tert-butyl (2R,3S,5R)-3,5-difluoro-2-(2,3-difluorophenyl)-2,5-dimethy1-6-oxo-piperidine-1-carboxylate and tert-butyl (2R,3S,5S)-3l5-difIuoro-2-(2l3-difluorophenyl)-2,5-dimethyl-6-oxo-piperidine-1 carboxylate were prepared In a similar way starting from tert-butyl (2R,3S)-3,5-difluoro-2-(2,3difluorophenyl)-2-methyl-6-oxo-piperidine-1-carboxylate
INTERMEDIATE: (3R,5S,6R)-3,5-Difluoro-6-(2-fluoro-5-nitro-pheny1)-3,6-dimethyl-plperldin-2-one
O tert-Butyl-(2R,3S,5R)-3,5-difluoro-2-(2-fluoropheny1)-2,5-dimethyl-6-oxo-piperidine-1-carboxylate (1.20 g, 3.36 mmol) in trifluoroacetic acid (5.69 mL, 73.9 mmol) was added H2SO4 (1.27 mL, 25.9 mmol), then to the solution was added HNO3 (1.16 mL, 16.8 mmol), the solution was stirred at 0*C for 30 min, then the solution was stirred at 50*C for 16 hours, LCMS showed no starting material, the solution was poured into ice-water (w/w =1/1) (50 mL) and basified to pH > 11 using 5N aqueous NaOH. The aqueous phase was extracted with ethyl acetate (50 mL, 3 times). The combined organic phases were washed with saturated brine (100 mL), dried with anhydrous Na2SO4l filtered and concentrated In vacuum. The residue was purified by flash chromatography on silica gel (petroleum ether/ethyl acetate=10/1,2/1 ) to give (3R,5S,6R)-3,5-difluoro-6-(2-fluoro-5nitro-phenyl)-3,6-dimethyl-piperidin-2-one (1.0 g, 99% yield).
(3S,5S,6R)-3,5-difluoro-6-(2-fluoro-5-nitrophenyl)-316-dÎmethylplperidÎn-2-one was prepared In a similar way starting from tert-butyl (2R,3S,5S)-3l5-difluoro-2-(2-fluorophenyl)-2,5-dimethyl-6-oxopiperidine-1 -carboxylate.
(3S,5R,6R)-3,5-difluoro-6-(2-fluoro-5-nitrophenyl)-3,6-dimethylplperidin-2-one was prepared in a similar way starting from tert-butyl (2R,3R,5S)-315-dÎfluoro-2-(2-fluorophenyl)-2,5-dimethyl-6-oxoplperidine-1 -carboxylate.
(3R15S,6R)-3,5-difluoro-6-(2,3-difluoro-5-nitrophenyl)-3,6-dimethylpiperidin-2-one was prepared in a similar way starting from tert-butyl (2R,3S,5R)-3,5-difluoro-2-(213-difluorophenyl)-2,5-dimethyl-6oxo-piperidîne-1-carboxylate.
(3S15S,6R)-3,5-difluoro-6-(2,3-difluoro-5-nitrophenyl)-316-dimethylpiperidin-2-one was prepared in a similar way starting from tert-butyl (2R,3S,5S)-3,5-difluoro-2-(2,3-difluorophenyl)-215-dimethyl-6oxo-piperidine-1 -carboxylate.
INTERMEDIATE: (3R15S,6R)-6-{5-amino-2-fluoro-phenyl)-3,5-difluoro-3,6-dÎmethyl-piperidin-2-one
To a solution of (3R,5S,6R)-3,5-difluoro-6-(2-fluoiO-5-nitro-phenyl)-3,6-dimethyl-piperidin-2-one (1.10 g, 3.64 mmol) in ethyl acetate (100 mL) was added Pd/C (10%, wet, 0.5 g) under N2. The suspension was degassed under vacuum and purged with H2 several times. The mixture was stirred under H2 (15 psi) at 25*C for 18 hours. The reaction mixture was filtered and the filtrate was concentrated to give (3R,5S,6R)-6-(5-amino-2-fluoro-phenyl)-3,5-dÎfluoro-3,6-dimethyl-piperidin-2one (950 mg, 3.49 mmol, 96% yield).
(3S,5S,6R)-6-(5-amino-2-fluorophenyl)-3,5-difluoro-3,6-dimethylpiperidin-2-one was prepared In a similar way starting from (3S,5S,6R)-3,5-difluoro-6-(2-fluoro-5-nîtrophenyl)-3,6-dimethylpipeiïdin2-one.
INTERMEDIATE: tert-Butyl N-[3-[(2R,3S,5R)-315-dÎfluoro-2,5-dimethyl-6-oxo-2-pÎperidyî]-4-fluorophenyfjcarbamate
O
O
To a mixture of (3/?,5S16R)-6-(5-amino-2-fluoro-phenyl)-3,5-difluoro-316-dimethyl-piperidin-2-one (750 mg, 2.75 mmol) in aqueous NaHCO3(5 mL) and dichloromethane (20 mL) was added di-tertbutyl dicarbonate (1.80 g, 8.26 mmol) In one portion at 25*C under N2. The colorless mixture was stirred at 25*C for 18 hours. The mixture was quenched with water (20 mL) and extracted with ethyl acetate (50 mL, 3 times). The combined organic phases were washed with saturated brine (50 mL, twice), dried with anhydrous Na2SO4, filtered and concentrated in vacuum. The residue was purified by flash chromatography on silica gel (petroleum ether/ethyl acetate=10/1,1/1) to give tert-butyl N[3-[(2/?,3S,5R)-3,5-difluoro-215-dimethyl-6-oxo-2-piperidyl]-4-fluoro-phenyl]carbamate (850mg, 83% yield).
tert-Butyl A/-[3-[(2R,3S15S)-3,5-difIuoro-2,5-dimethyl-6-oxo-2-piperidy1]-4-fluoro-phenyf]carbamate was prepared In a similar way starting from (3S,5S,6R)-6-(5-amlno-2-fluoro-phenyl)-3,5-difluoroS.â-dimethyl-piperidin^-one.
INTERMEDIATE: tert-Butyl N-[3-[(2R,3S15R)-3I5-difluoro-215-dimethyl-6-thioxo-2-pÎperidyl]-
4-fluoro-phenyl]carbamate
O
Boc'
To a suspension of tert-butyl N-[3-[(2R,3S,5R)-3I5-difluoro-215-dimethyl-6-oxo-2-piperidyl]-4-fluorophenyljcarbamate (250 mg, 671 pmol) In toluene (10 mL) was added Lawesson's reagent (2,4-bis(4-methoxyphenyl)-1,3,2l4-dithladiphosphetane-2,4-disulflde) (149 mg, 369 pmol) In one portion at 90*C under N2. The mixture was stirred at 90eC for 1 hour. The mixture was concentrated in reduced pressure. The residue was purified by flash chromatography on silica gel (petroleum ether/ethyl acetate=10/1,1/1) to give tert-butyl /V-[3-[(2R,3S,5R)-3,5-difluoro-2,5-dimethyl-6-thioxo2-piperidyl]-4-fluoro-phenyl]carbamate (230 mg, 88% yield).
tert-butyl W-[3-[(2R,3S,5S)-3,5-difluoro-2,5-dimethyl-6-thioxo-2-plperidyl]-4-fluoro-phenyl]carbamate was prepared in a similar way starting from tert-butyl N-[3-[(2R,3S,5S)-3,5-difluoro-2,5-dimethyl-
6-oxo-2-plperidyl]-4-fluoro-phenyl]carbamate.
INTERMEDIATE: (3R,5S,6R)-6-(5-Amino-2-fluoro-phenyl)-3,5-difluoro-3,6-dimethy!-piperidine2-thione
To a solution of tert-butyl W-[3-[(2R,3S,5R)-3,5-difluoro-2,5-dimethyl-6-thioxo-2-piperidyt]-4-fluorophenyl]carbamate (500 mg, 1.29 mmol) In dichloromethane (20 mL) was added HCI/MeOH (10 mL) in one portion at 25*C under N2. The mixture was stirred at 25’C for 18 hours. The mixture was concentrated In reduced pressure. The residue was dissolved in water (10 mL), the pH of the solution was basified to pH=7-8 using saturated aqueous NaHCO3 solution, the aqueous phase was extracted with ethyl acetate (20 mL, 3 times). The combined organic phases were washed with saturated brine (20 mL, twice), dried with anhydrous Na2SO4, filtered and concentrated In vacuum. The residue was purified by flash chromatography on silica gel (petroleum ether/ethyl acetate=10/1, 1/1) to give (3R,5S,6R)-6-(5-amlno-2-fluoro-phenyl)-3,5-difluoro-316-dimethyl-piperidine-2-thione (318 mg, 85.5% yield). (3S,5S,6R)-6-(5-amino-2-fluoro-phenyl)-3,5-difluoro-3,6-dimethyl-piperidine-2-thlonewas prepared In a similar way starting from tert-butyl N-[3-[(2R,3S,5S)-3,5-difluoro-2,5-dimethyl-6-thioxo-2piperidyl]-4-fluoro-phenyl]carbamate.
INTERMEDIATE: (3S,5S,6R)-3,5-difluoro-6-(2-fluoro-5-nitrophenyl)-3,6-dimethylplperidine-2-thione
To a suspension of (3S,5S,6R)-3,5-difluoro-6-(2-fluoro-5-nitrophenyl)-3,6-dÎmethylpiperidin-2-one (4.50 g, 14.89 mmol) In toluene (100 mL) was added Lawesson’s reagent (3,31 g, 8.19 mol) In one portion at 90eC under N2. The mixture was stirred at 90’C for 2 hours. The mixture was concentrated in vacuo. The residue was purified by flash chromatography on silica gel (petroleum ether/ethyl acetate) to give (3S,5S,6R)-3,5-difIuoro-6-(2-fluoro-5-nitrophenyl)-3,6dimethylpiperidine-2-thione (4,0 g, 84% yield).
(3S,5Rt6R)-315-dïfluoro-6-(2-fluoro-5-nitrophenyl)-3,6-dimethylpiperidine-2-thione was prepared in a similar way starting from (3S,5R,6R)-3,5-difluoro-6-(2-fluoro-5-nitrophenyl)-3l6-dimethylpiperidin-2 one.
(3S,5S,6R)-6-(2,3-<iifluoro-5-nitrophenyl)-3I5-difluoro-3,6-dimethytpiperidÎne-2-thione was prepared in a similar way starting from (SS.SS.eRj-e-^.S-difluoro-S-nitrophenyO-S.S-difluoro-S.edimethyipiperidîn-2-one.
(3R,5S,6R)-6-(2,3-difluoro-5-nitrophenyl)-315-difluoro-3,6-dimethylpiperidine-2-thione was prepared in a similar way starting from (3R,5S,6R)-6-(2,3-difIuoro-5-nitrophenyl)-3,5-difluoro-3,6dimethylpiperidin-2-one.
INTERMEDIATE: (3S,5S,6R)-6-{5-amino-2-fluorophenyl)-3,5-dÎfluoro-3,6-dimethylpiperidine-2thlone
To a solution of (3S,5S,6R)-3,5-difluoro-6-(2-fluoro-5-nitrophenyl)-3,6-dimethylpîperidine-2-thîone (4.50 g, 14.14 mmol) and NH4CI (3.78 g, 70.70 mmol) in éthanol (80 mL) and water (20 mL) was added Iron powder (3.95 g, 70.70 mmol) in one portion at 25*C under N2. The black suspension was stirred at 25 ’C for 18 hours. The mixture was filtered and the filtrate was concentrated in reduced pressure. The residue was extracted with ethyl acetate (100 mL x 3). The combined organic phases were washed with saturated brine (100 mL), dried with anhydrous Na2SO4, filtered and concentrated in vacuo. The residue was purified by flash chromatography on siiica gel (petroleum ether/ethyl acetate) to give (3S,5S,6R)-6-(5-amino-2-fluoropheny!)-3,5difiuoro-3,6-dimethylplperidine-2-thione (2.59 g, 61% yield). 1H NMR (CDCIa 400 MHz TMS): δ 8.33 (s, 1 H), 6.93-6.87 (m, 1H), 6.62-6.60 (m, 1H), 6.45-6.44 (m, 1 H), 5.38-5.26 (m, 1H), 3.73 (s, 2H), 2.65-2.58 (m, 1H ), 2.00-1.86 (m, 1H), 1.80 (s, 3H), 1.68 (d, J = 20.8 Hz, 3H). [a]?? = -58* (c = 0.1 g/100mL, MeOH).
(3S,5R,6R)-6-(5-amino-2-fluoro-phenyl)-3,5-difluoro-3,6-dimethyl-piperidine-2-thÎone was prepared
In a similar way starting from (3S,5R,6R)-3,5-difluoro-6-(2-fluoro-5-nitrophenyl)-3(6dimethylpiperidîne-2-thione.
(3S,5S,6R)-6-(5-amino-213-difluoro-phenyl)-3,5-difluoro-3,6-dimethyl-piperidine-2-thione was prepared in a similar way starting from (3S,5S,6R)-3,5-difluoro-6-(2,3-difluoro-5-nitrophenyl)-316dimethyfplperidine-2-thione.
(3/?,5S,6R)-6-(5-amino-2,3-difluoro-pheny1)-3,5-difIuoro-316-dimethyl-piperidine-2-thione was prepared in a similar way starting from (3R,5S,6R)-3,5-difluoro-6-(2,3-difluoro-5-nitrophenyl)-3,6dimethylpiperidine-2-thione.
INTERMEDIATE: methy)-d3-5-(methoxy-d3)pyrazine-2-carboxylate
Sodium (0.094 g, 4.10 mmol) was added in small portions methanol-d4 (2.94 ml) and the reaction mixture was stirred until ail sodium has reacted. The soultion was the added to another souftion of methyl-5-chloropyrazine-2-carboxylate (0.6 g, 3.48 mmol) in methanol-d4 (0.98 ml). The reaction mixture was stirred for 1.5 hours at room température. The reaction mixture was concentrated in vacuo. 2 ml of water was added. The mixture was extracted with ethyl acetate. The organic phase was washed with brine, dried over MgSO4 and concentrated in vacuo to give methyl-d3-5-(methoxyd3)pyrazine-2-carboxylate.
INTERMEDIATE: 5-(methoxy- d3)pyrazine-2-carboxylic acid
O O
MethyLd3-5-(methoxy-d3)pyrazine-2-carboxylate (424 mg, 2.43 mmol) was dissolved in water (3 ml) and 1,4-dioxane (3 ml). Lithium hydroxide (146 mg, 6.09 mmol) was added and the reaction mixture was stirred for 1 hour. The reaction mixture was evaporated to about 2 ml and extracted with diethylether. The organic phase was extracted with 1M NaOH and the combined aqueous phases were acidified to pH 2 with 6N HCl (aq). The mixture was cooled on an icebath, and the solid compound collected to give 5-(methoxy-d3)pyrazine-2-carboxylic acid.
INTERMEDIATE: methyl 5-(methoxy-d3)picolinate
Ο ο
Methyl 5-hydroxypicoîinate (2.88 g, 18.8 mmol) was dissolved in dimethylformamide (108 ml) under argon. Potassium carbonate (7.20 g, 52.1 mmol) was added and the orange suspension was stirred for 45 minutes at room température. Iodomethane-d3 (1.41 ml, 22.6 mmol) was added. The réaction mixture was stirred for 2 hours. Water was added. The mixture was extracted with ethyl acetate. The organic phase was washed with brine, dried over MgSO< and concentrated in vacuo and purified by column chromatography on silica gel (heptane: ethyl acetate) to give methyl 5(methoxy-d3)picolinate.
INTERMEDIATE: 5-(methoxy-cf3)picolinic acid
O O
Methyl 5-(methoxy-d3)plcolinate (200mg, 1.175 mmol) was dissolved in water (1.5 ml) and 1,4dioxane (3 ml). Lithium hydroxide (70.4 mg, 2.94 mmol) was added and the réaction mixture was stirred for 1 hour. The réaction mixture was evaporated to about 2 ml and extracted with diethylether. The organic phase was extracted with 1M NaOH and the combined aqueous phases were acldified to pH 2 with 6N HCl (aq). The mixture was cooled on an Icebath and a precipitate was formed. The precipitate was collected to give 5-(methoxy-d3)picolinlc acid.
PREPARATION OF THE COMPOUNDS OF THE INVENTION
Example 1 N-(3-((2R,3Sl5S)-6-Amino-3,5-difluoro-2,5-dimethyl-2,314,5-tetrahydropyridin-2-yl)-
4-fluoropheny1)-5-fluoropicolÎnamlde (compound 1)
To a solution 5-fluoropicolinîc acid (0.019 g, 0.14 mmol) in DMF (1 mL), HATU (1-[bis(dimethylamlno)methylene]-1H-1 ^.S-triazolo^.S-bJpyridinium 3-oxid hexafluorophosphate) (0.046 g, 0.12 mmol) was added, the solution was stirred 5 minutes. Then (3S,5S,6R)-6-(5-amino2-fluoro-phenyl)-3,5-difluoro-3,6-dimethyl-plperidine-2-thlone (0.025 g, 0.092 mmol) and DIPEA (Λ/,Ν-diisopropylethylamÎne) (0.08 mL, 0.46 mmol) were added. The mixture was stirred at room température for 1 hour. Saturated aqueous NH<CI was added and the mixture was extracted with ethyl acetate. The organic phase was washed with brine, dried over MgSO<, filtered and concentrated under reduced pressure. The residue was dissolved in 7M ammonia in methanol (2 mL). The mixture was stirred at 65’C ovemight, concentrated under reduce pressure and purified by column chromatography on silica gel (heptane: ethyl acetate). The obtained oil was dissolved in ethyl acetate and washed with saturated aqueous NaHCOj/water (1/1) five times. The organic phase was concentrated under reduced pressure to afford A/-(3-((2R,3S,5S)-6-amino-3,5-difluoro2,5-dimethyl-2,3,4,5-tetrahydropyrÎdin-2-yl)-4-fluorophenyl)-5-fluoropicolinamide (0.019 mmol, 21% yield). 1H NMR (600 MHz, DMSO) δ 10.64 (s, 1H), 8.74 (d, J = 2.8 Hz, 1H), 8.23 (dd, J= 8.7,4.6 Hz. 1H). 7.98 (td, J= 8.7,2.9 Hz. 1H), 7.89-7.75 (m, 2H), 7.16 (dd, J = 11.8,8.6 Hz, 1H), 6.11 (s, 2H), 5.23-5.03 (m, 1 H), 2.37-2.26 (m, 1H), 2.01 -1.84 (m, 1H), 1.62 (d, J = 23.9 Hz, 3H), 1.52 (d, J =1.1 Hz, 3H).
LC-MS (m/z) 395.4 (MH*); k = 0.47 minutes (Method B)
The following compounds were prepared ln a way similar to example 1:
Example 2 N-(3-((2R13S,5S)-6-amino-3,5-difluoro-2,5-dimethyl-2,3,4,5-tetrahydropyridin-2-yl)-
4-fluorophenyl)-5-methoxypyrazine-2-carboxamide (compound 2)
Prepared from (3S,5S,6R)-6-(5-amino-2-fluoro-pheny1)-3,5-difluoro-3,6-dimethyl-piperidine-2-thione and 5-methoxypyrazine-2-carboxylic acid.
’H NMR (600 MHz, DMSO) δ 10.53 (s, 1H). 8.88 (d, J= 1.3 Hz, 1H), 8.41 (d, J= 1.3 Hz, 1H), 7.82 (m, 1H), 7.16 (dd, J = 11.9, 8.7 Hz, 1H). 6.10 (broad s, 2H), 5.18-5.07 (m,1H), 4.03 (s, 3H), 2.37-
2.26 (m, 1H), 1.99-1.83 (m, 1H), 1.53 (d, J = 23.9 Hz, 3H), 1.52 (s, 3H). LC-MS (m/z) 408.4 (MH*); ta = 0.47 minutes (Method B)
Example 3 N-(3-((2R,3S,5S)-6-amino-3,5-difluoro-2,5-dimethyl-2,3,4,5-tetrahydropyridin-2-yl)-
4-fluorophenyl)-5-methoxypicolinamide (compound 3)
Prepared from (3S,5S16/?)-6-(5-amino-2-fluoro-phenyl)-315-difluoro-316-dimethyl-piperidine-2-thione and 5-methoxypico!inic acid.
’H NMR (600 MHz, DMSO) δ 10.46 (s, 1H), 8.43 - 8.34 (m, 1H), 8.16 - 8.06 (m. 1H), 7.85 (ddd, J = 8.7,4.1,2.8 Hz, 1 H), 7.79 (dd, J= 7.3,2.8 Hz, 1H), 7.61 (dd, 8.7,2.8 Hz, 1H), 7.15 (dd, J =
11.9, 8.8 Hz, 1 H), 6.46 - 5.73 (m, 2H). 5.20 - 5.06 (m, 1 H), 3.93 (s, 3H), 2.37 - 2.22 (m, 1 H), 2.021.84 (m, 1H), 1.62 (d. J =23.9 Hz, 3H), 1.52 (m,3H). LC-MS (m/z) 407.4 (MH*); ta = 0.48 minutes (Method B)
Example 4 N-(3-((2R,3S,5R)-6-amino-3,5-difluoro-2,5-dimethyl-2,3,4,5-tetrahydropyridin-2-yl}10 4-fluorophenyl)-5-fluoropicolinamide (compound 4)
Prepared from (3R,5S,6R)-6-(5-amino-2-fluoro-phenyl)-315-difluoro-3,6-dimethyl-plperidÎne-2-thlone and 5-fluoropicolinic acid.
’H NMR (600 MHz, DMSO) δ 10.77 (s, 1H), 8.73 (d, J- 2.8 Hz, 1H), 8.22 (dd, J~ 8.7,4.6 Hz, 1H), 15 7.97 (td, J- 8.7,2.8 Hz, 1H). 7.82 - 7.73 (m, 1H), 7.71 (dd, J- 7.2,2.6 Hz, 1H), 7.17 (dd, J-11.7,
8.8 Hz, 1 H), 6.25 (s, 2H), 5.12 (dd, J = 48.0,2.5 Hz, 1H), 2.45 - 2.25 (m, 1H). 1.76 -1.58 (m, 1H).
1.56 (s, 3H), 1.53 (d, J ~ 22.1 Hz, 3H). LC-MS (m/z) 395.1 (MH*); ta = 0.46 minutes (Method A)
Example 5 N-(3-((2R,3S,5R)-6-amino-3,5-difluoro-2,5-dimethyl-2,3,4,5-tetrahydropyridin-2-yl)20 4-fluorophenyl)-5-methoxypyrazine-2-carboxamide (compound 5)
Prepared from (3/?,5S,6/?)-6-(5-amlno-2-fluoro-phenyl)-3,5-difluoro-316-dimethyl-piperidine-2-thione and 5-methoxypyrazine-2-carboxylic acid.
’H NMR (600 MHz, DMSO) δ 10.67 (s, 1H), 8.67 (s, 1H), 8.41 (d, J= 1.3 Hz, 1H), 7.76 (m, 1H),
7.71 (dd, J= 7.2, 2.6 Hz, 1H), 7.17 (dd, 11.7, 8.8 Hz, 1H), 6.30 (broad s, 2H), 5.12 (dd, J =
47.9, 2.5 Hz. 1H), 4.02 (s, 3H). 2.38-2.28 (m, 1H), 1.73-1.58 (m, 1H), 1.56 (s, 3H), 1.53 (d, J =
22.1 Hz, 3H). LC-MS (m/z) 408.2 (MH*); ta - 0.48 minutes (Method A)
Example 6 N-(3-((2R,3S,5R)-6-amino-3,5-difluoro-2,5-dimethyl-2,3,4,5-tetrahydropyridin-2-yl )4-fluorophenyl)-2-methyloxazole-4-carboxamide (compound 6)
Prepared from (3R,5S,6R)-6-(5-amino-2-fluoro-phenyl)-3,5-difluoro-316-dimethyl-piperidine-2-thione and 2-methyloxazole-4-carboxylic acid.
’H NMR (600 MHz, DMSO) δ 10.37 (s, 1H), 8.65 (s, 1H), 7.78 - 7.72 (m, 1H), 7.71 - 7.66 (m, 1H), 7.18 (dd, J = 11.6,8.9 Hz, 1 H), 5.22 - 5.09 (m, 1H). 2.50 (s, 3H), 2.43 - 2.33 (m, 1 H), 1.75 -1.62 (m, 1 H), 1.60 (s, 3H). 1.56 (d, J = 22.1 Hz, 3H). LC-MS (m/z) 381.1 (MH+); fe = 0.43 minutes (Method A)
Example 7 N-(3-((2R,3S,5R)-6-amino-3,5-difluoro-2,5-dimethyl-2,3,4,5-tetrahydropyridin-2-yl)-
4-fluorophenyl)-5-methoxypicolinamide (compound 7)
Prepared from (3R,5S,6R)-6-(5-amino-2-fluoro-phenyl)-3,5-difluoro-3,6-dimethyl-plperidÎne-2-thione and 5-methoxyplcolinic acid.
1H NMR (600MHz, DMSO) δ 10.61 (s, 1H), 8.41 -8.30(m, 1H), 8.14-8.07(m, 1H), 7.80-7.74(m,
1H), 7.71 (dd, 7.3,2.8 Hz, 1H), 7.60 (dd, J= 8.8,2.8 Hz, 1H), 7.15 (dd, J= 11.8,8.8 Hz, 1H), 6.27 (s, 2H), 5.19 - 5.05 (m, 1 H), 3.93 (s, 3H). 2.45 - 2.27 (m, 1 H), 1.76 -1.59 (m, 1 H), 1.56 (s. 3H). 1.53 (d, J =
22.1 Hz, 3H). LC-MS (m/z) 407.1 (MH*); fe = 0.5 minutes (Method A)
Example 8 N-(3-((2R13S,5R)-6-amino-3I5-difluoro-2,5-dimethyl-2,314,5-tetrahydropyridin-2-yl)-4fluoropheny!)-5-(methoxy-d3)picolinamide (Compound 8)
Prepared from (3R,5S,6R)-6-(5-amlno-2-fluoro-phenyl)-3,5-dinuoro-3,6-dimethyl-piperidine-2-thione and 5-fmethoxy-d3)picolinic acid. 1H NMR (600 MHz, DMSO) δ 10.72 (s, 1H), 8.39 (d, J - 2.8 Hz, 1H), 8.12 (d, J = 8.7 Hz, 1H), 7.90 (s, 1H), 7.80-7.75 (m, 1H), 7.60 (dd, J~ 8.7,2.9 Hz, 1H), 7.21 (dd, J = 11.6, 9.0 Hz, 1H), 5.21 (d, J = 47.5 Hz, 1H), 2.46-2.38 (m, 1H), 1.82-1.66 (m, 1H). 1.64 (s, 3H), 1.61 (d, J = 22.1 Hz, 3H). LC-MS (m/z) 410 (MH*); tR = 0.49 (Method A)
Example 9 N-(3-((2R,3S,5R)-6-amino-3,5-difluoro-2,5-dimethy1-2,3,4,5-tetrahydropyridin-2-yl)-4fluorophenyl)-5-chloropicolinamide (Compound 9)
Prepared from (3R,5S,6R)-6-(5-amino-2-fluoro-phenyl)-3,5-difluoro-3,6-dimethyl-piperidine-2-thlone and 4-chlorobenzoic acid. 1H NMR (600 MHz, DMSO) δ 10.83 (s, 1H), 8.78 (dd, J = 2.4, 0.7 Hz.
1H), 8.18 (dd, J - 8.4, 2.4 Hz, 1H), 8.15 (dd, J = 8.4, 0.7 Hz, 1 H), 7.78 (ddd, J - 8.7,4.1,2.8 Hz,
1H), 7.71 (dd, J = 7.3, 2.7 Hz, 1H), 7.17 (dd, J = 11.7,8.8 Hz, 1H), 6.21 (s, 2H), 5.11 (ddd, J = 48.2,
4.7,2.1 Hz, 1 H), 2.34 (dddd, J = 20.7,15.6, 8.9,4.8 Hz, 1 H), 1.72 -1.57 (m, 1 H). 1.56 (s, 3H), 1.53 15 (d, J = 22.1 Hz, 3H). LC-MS (m/z) 411.1 (MH*); tn = 0.53 (Method A)
Example 10 N-(3-((2R,3S,5/?)-6-amlno-3,5-difluoro-2,5-dimethyl-2,3,4,5-tetrahydropyridin-2-yi)-4fluorophenyl)-1-methyl-1 H-imidazole-2-carboxamide (Compound 10)
Prepared from (3R,5S,6/?)-6-(5-amino-2-fluoro-phenyl)-3,5-difluoro-316-dimethyl-piperidine-2-thione and 1-methyl-1 H-imidazole-2-carboxyfic acid. 1H NMR (600 MHz, DMSO) δ 10.53 (s, 1H), 7.72 (ddd, J = 8.7,4.2,2.8 Hz, 1H), 7.61 (dd, J= 7.3,2.7 Hz, 1H), 7.43 (d, J~ 0.7 Hz, 1H). 7.12 (dd, J =
11.8, 8.8 Hz, 1H), 7.07 (d, J = 1.0 Hz, 1H), 6.16 (s, 2H), 5.15 - 5.04 (m, 1H), 3.97 (s, 3H), 2.32 (dddd, J = 20.8,15.5,8.9,4.9 Hz, 1H), 1.71 -1.56 (m, 1 H). 1.54 (s, 3H), 1.51 (d, J= 22.1 Hz, 3H).
LC-MS (m/z) 380.1 (MH*); tR = 0.42 (Method A)
Example 11 N-(3-((2R,3S,5R)-6-amino-3,5-difluoro-2,5-dimethyl-2,3,4,5-tetrahydropyridin-2-yl)-4fluoropheny1)-5-(trifluoromethyl)pyrazine-2-carboxamide (Compound 11)
Prepared from (3/?,5S,6R)-6-(5-amino-2-fluoro-phenyl)-315-difluoro-3,6-dimethyl-piperidine-2-thione and 5-(trifluoromethyl)pyrazine-2-carboxylic acid. ’H NMR (600 MHz, DMSO) δ 11.13 (s, 1H), 9.44 (d, J = 1.0 Hz, 1 H), 9.30 (d, J -1.0 Hz, 1 H), 7.81 (ddd, J = 8.7,4.1,2.8 Hz, 1 H), 7.74 (dd. J = 7.2,
2.7 Hz, 1 H), 7.20 (dd, J = 11.7, 8.8 Hz, 1 H), 6.23 (s, 2H), 5.18 - 5.06 (m, 1 H), 2.34 (dddd, J = 20.7,
15.6, 9.0, 4.8 Hz, 1H), 1.71 -1.58 (m, 1H), 1.56 (s, 3H), 1.53 (d, J = 22.0 Hz, 3H). LC-MS (m/z)
446.1 (MH*); tR = 0.53 (Method A)
Example 12A/-(3-((2R,3S,5R)-6-amÎno-3,5-difluoro-2,5-dimethyl-2l3,4,5-tetrahydropyridin-2-yl)-4fluorophenyl)-4-methylthiazole-2-carboxamlde (Compound 12)
Prepared from (3R,5S,6R)-6-(5-amlno-2-fluoro-phenyl)-3,5-difluoro-3,6-dimethyl-piperidine-2-thione and 4-methylthiazole-2-carboxylic acid. 1H NMR (600 MHz, DMSO) δ 10.91 (s, 1H), 7.78 - 7.72 (m, 1H), 7.71 - 7.67 (m, 2H), 7.16 (dd, J = 11.7,8.8 Hz, 1H), 6.21 (s, 2H), 5.16 - 5.05 (m, 1H), 2.50 (t, J = 2.0 Hz, 3H), 2.38 - 2.27 (m, 1 H), 1.70-1.56 (m, 1 H), 1.55 (s, 3H), 1.52 (d, J = 22.0 Hz, 3H). LC-MS (m/z) 397.1 (MH*); tH = 0.5 (Method A)
Example 13 N-(3-((2R,3S,5R)-6-amlno-3,5-difluoro-2,5-dimethyl-2,3,4,5-tetrahydropyridin-2-yl)-4fluorophenyt)-2-(difluoromethyl)oxazole-4-carboxamide (Compound 13)
Prepared from (3R,5S,6R)-6-(5-amino-2-fluoro-phenyl)-315-dinuoro-3,6-dimethyl-piperidine-2-thlone and 1-(difluoromethyl)-1H-pyrazole-3-carboxyticacid. ’H NMR (600 MHz, DMSO) δ 10.54 (s, 1H),
9.04 (s, 1H), 7.67 (ddd, J = 8.7,4.2,2.8 Hz, 1H), 7.62 (dd, J = 7.2,2.7 Hz, 1H). 7.33 (t, J = 51.9 Hz,
1H), 7.15 (dd, J = 11.7, 8.8 Hz, 1H), 6.17 (s, 2H), 5.10 (ddd, J = 48.2,4.5,2.1 Hz, 1H), 2.38 - 2.27 (m, 1H), 1.69-1.56 (m, 1H), 1.55 (s, 3H). 1.51 (d, J = 22.0 Hz, 3H). LC-MS (m/z) 417.1 (ΜΗ*);ίκ =
0.47 (Method A)
Example 14 N-(3-((2R,3S,5R)-6-amino-3,5-difluoro-2,5-dimethyl-2,3,4,5-tetrahydropyridin-2-yl)-45 fluorophenyl)-1-(difluoromethyl)-1H-pyrazole-3-carboxamlde (Compound 14)
Prepared from (3R,5S,6R)-6-(5-amtno-2-fluoro-phenyl)-3,5-difluoro-3,6-dimethyl-pÎperidine-2-thione and 5-(methoxy-d3)pyrazine-2-carboxylicacid. 1H NMR (600 MHz, DMSO) δ 10.52 (s, 1H), 8.41 (d, J = 2.7 Hz, 1H), 7.92 (t, J = 58.7 Hz, 1H), 7.69 (ddd, J = 8.7, 4.1, 2.8 Hz, 1H), 7.63 (dd, J = 7.3, 2.7 10 Hz, 1H), 7.15 (dd, J = 11.8, 8.8 Hz, 1H), 7.01 (d, J = 2.7 Hz, 1H), 6.19 (s, 2H), 5.11 (ddd, J = 48.2,
4.5,2.1 Hz, 1 H), 2.39 - 2.26 (m, 1 H). 1.73 -1.56 (m, 1 H), 1.55 (s, 3H), 1.51 (d, J = 22.0 Hz, 3H). LC-MS (m/z) 416.1 (MH*); t« = 0.46 (Method A)
Example 15 N-(3-((2/?,3S,5R)-6-amino-3,5-difluoro-2,5-dÎmethyl-2,3,4,5-tetrahydropyridin-2-yl)-415 fluorophenyl)-5-(difluoromethy!)pyrazine-2-carboxamÎde (Compound 15)
Prepared from (3R,5S,6/?)-6-(5-amino-2-fluoro-pheny1)-3,5-difluoro-3,6-dinTethyl-piperidine-2-thione and 5-cyano-3-methylpicolÎnic acid. Ή NMR (600 MHz, DMSO) δ 11.06 (s, 1H), 9.38 (d, J = 1.4 Hz, 1H), 9.09 (d, J - 0.9 Hz. 1 H), 7.81 (ddd, J = 8.7,4.1,2.8 Hz, 1H), 7.74 (dd, J = 7.2,2.7 Hz, 1H),
7.26 (t, J = 54.0 Hz, 1H), 7.20 (dd, J = 11.7, 8.8 Hz, 1H), 6.22 (s, 2H), 5.12 (ddd, J = 48.2,4.6, 2.1
Hz, 1H), 2.41 - 2.28 (m, 1H), 1.72 -1.58 (m, 1H), 1.56 (s, 3H), 1.53 (d, J = 22.0 Hz, 3H). LC-MS (m/z) 428.1 (MH*); U = 0.48 (Method A)
Example 16 N-(3-((2/?,3S15R)-6-amino-3,5-difluoro-2,5-dimethyl-2,314,5-tetrahydropyridin-2-yl)-425 fluorophenyl)-4-chlorobenzamlde (Compound 16)
Prepared from (3R,5S,6R)-6-(5-amino-2-fluoro-pheny1)-3,5-difluoro-3,6-dimethyl-piperidine-2-thione and 5-(methoxy-cf3)pÎcolinic acid. Ή NMR (600 MHz, DMSO) δ 10.45 (s, 1H), 7.96-7.92 (m, 2H), 7.70 (ddd, J ~ 8.7,4.1,2.8 Hz, 1H), 7.62 - 7.58 (m, 2H), 7.54 (dt, J - 7.2,3.6 Hz, 1H), 7.16 (dd, J =
11.8, 8.8 Hz, 1H), 6.17(s, 2H), 5.11 (ddd, J = 48.2, 4.6, 2.1 Hz. 1H), 2.38-2.28 (m, 1H), 1.71 -
1.57 (m, 1H), 1.56 (s, 3H), 1.50 (d, J - 22.0 Hz, 3H). LC-MS (m/z) 410.1 (MH*); t* = 0.54 (Method A)
Example 17 N-(3-((2R,3S,5R)-6-amino-3,5-difluoro-2,5-dimethyl-2,3,4,5-tetrahydropyridin-2-yl)-4fluorophenyl)-5-cyanopicolinamJde (Compound 17)
Prepared from (3/?,5S,6/?)-6-(5-amino-2-fluoro-pheny!)-3,5-difluoro-3,6-dÎmethyl-piperidine-2-thione and 5-cyanopicolintc acid. Ή NMR (600 MHz, DMSO) δ 10.99 (s, 1H), 9.19 (dd, J = 2.1,0.9 Hz, 1H), 8.57 (dd, J = 8.2, 2.1 Hz, 1H), 8.28 (dd, J = 8.2,0.9 Hz, 1H), 7.79 (ddd, J = 8.7, 4.1,2.9 Hz, 1 H), 7.72 (dd, J = 7.2, 2.7 Hz, 1 H), 7.18 (dd, J = 11.7,8.8 Hz, 1 H), 6.20 (s, 2H), 5.17 - 5.05 (m, 1H), 2.41-2.26 (m, 1H), 1.69-1.56 (m, 1H), 1.55 (s. 3H), 1.52 (d, J = 22.1 Hz, 3H). LC-MS (m/z)
402.1 (MH*); tR = 0.47 (Method A)
Example 18 N-(3-((2R,3S,5R)-6-amino-3,5-difluoro-2,5-dimethyl-2,3,4,5-tetrahydropyrldin-2-yl)-4,5difluorophenyl)-5-(methoxy-d3)picolinamide (Compound 18)
Prepared from (3R,5S,6R)-6-(5-amino-2,3-difluoro-phenyl)-3,5-difluoro-3,6-dimethyl-piperidine-2thione and 2-(difluoromethyl)oxazole-4-carboxylic acid. 1H NMR (600 MHz, DMSO) δ 10.89 (s, 1H),
8.38 (d, J = 2.8 Hz, 1H), 8.12 (d, J = 8.7 Hz, 1 H), 8.08 - 8.01 (m, 1H), 7.63 - 7.58 (m, 2H), 5.22 39
5.09 (m, 1H), 2.47-2.35 (m. 1H), 1.85-1.69 (m, 1H), 1.62 (s, 3H), 1.58 (d, J = 22.1 Hz, 3H). LCMS (m/z) 428.1 (MH*); tR = 0.54 (Method A)
Example 19 N-(3-((2R,3S,5S)-6-amino-3,5-difluoro-2(5-dÎmethyl-2,3,4,5-tetrahydropyridin-2-yl)-45 fluorophenyl)-5-(methoxy-d3)picolinamide (Compound 19)
Prepared from (3S,5S,6R)-6-(5-amino-2-fluoro-phenyl)-3,5-dîfluoro-3,6-dimethy!-pÎperidine-2-thione and 5-(methoxy-dj)picolinlc acid. ’H NMR (600 MHz, DMSO) δ 10.46 (s, 1 H), 8.39 (dd, J = 2.9, 0.5 Hz, 1H), 8.12 (dd, J =8.7,0.5 Hz, 1H). 7.86-7.80 (m, 1H), 7.78 (dd, J = 7.3, 2.7 Hz, 1H), 7.61 (dd,
J = 8.7,2.9 Hz, 1H), 7.15 (dd, J = 11.8, 8.8 Hz, 1H), 6.07 (s, 2H), 5.12 (dd, J = 48.5, 6.1 Hz, 1H),
2.35-2.27 (m, 1H), 1.98-1.84 (m, 1H), 1.61 (d, J = 23.9 Hz, 3H), 1.51 (s, 3H). LC-MS (m/z) 410 (MH*); tR = 0.49 (Method A)
Example 20 N-(3-((2/?,3S,5S)-6-amino-3l5-difluoro-215-dimethyl-2,3,4,5-tetrahydropyridin-2-yl)-415 fluorophenyl)-5-(methoxy-d3)pyrazine-2-carboxamide (Compound 20)
Prepared from (3S,5S,6R)-6-(5-amlno-2-fluoro-phenyl)-3,5-difluoro-3,6-dimethyl-piperidîne-2-thione and 5-(methoxy-d3)picolinic acid. 1H NMR (600 MHz, DMSO) δ 10.52 (s, 1H), 8.88 (s, 1 H), 8.40 (s,
H), 7.86 - 7.78 (m, 2H), 7.16 (dd, J = 11.6, 8.9 Hz, 1 H), 6.13 (s, 2H), 5.12 (dd, J = 48.6,5.3 Hz,
1H), 2.35 - 2.28 (m, 1H), 2.01 -1.84 (m, 1H), 1.62 (d, J = 23.9 Hz, 3H), 1.52 (s, 3H). LC-MS (m/z)
411.2 (MH*); tR = 0.48 (Method A)
Example 21 N-(3-((2R,3S>5S)-6-amino-3,5-difluoro-2l5-dimethyt-2I3,4,5-tetrahydropyridÎn-2-yt)-4fluorophenyl)-5-cyano-3-methylpicolÎnamlde (Compound 21)
Prepared from (3S,5S,6R)-6-(5-amino-2-fluoro-phenyt)-3,5-difluoro-3,6-dimethyl-piperidine-2-thione and 5-chloroplcolinlc add. ’H NMR (600 MHz, DMSO) δ 10.77 (s, 1H), 8.98 (s, 1H), 8.39 (s, 1H),
7.89 - 7.82 (m, 1 H), 7.64 (d, J = 5.1 Hz, 1 H), 7.17 (dd, J = 11.5, 9.1 Hz, 1 H), 6.20 (s, 2H), 5.18 -
5.06 (m, 1 H), 2.50 (s, 3H), 2.37 - 2.28 (m, 1H), 1.97 -1.83 (m, 1 H), 1.62 (d, J = 23.9 Hz, 3H), 1.52 (s, 3H). LC-MS (m/z) 416 (MH*); tR = 0.51 (Method B)
Example 22 W-(3-((2/?,3S,5S)-6-amino-3,5-dinuoro-2,5-dimethyl-2,3,4,5-tetrahydropyridin-2-yl)-4,5difluorophenyl)-5-(methoxy-d3)picolinamide (Compound 22)
F
Prepared from (3S,5S,6R)-6-(5-amino-2,3-difluoro-pheny1)-3,5-difluoro-3,6-dimethyl-piperidine-2thione and 5-(difluoromethyl)pyrazïne-2-carboxylic acid. ’H NMR (600 MHz, DMSO) δ 10.68 (s, 1H), 8.39 (d, J = 2.8 Hz, 1H), 8.12 (d, J = 8.7 Hz, 1H), 8.04 - 7.98 (m, 1 H), 7.68 (d, J - 5.1 Hz, 1H),
7.62 (dd, J - 8.7,2.9 Hz, 1H), 6.36 (s, 2H), 5.10 (dd, J - 48.6, 6.2 Hz, 1H), 2.38 - 2.29 (m, 1H),
2.08 -1.91 (m, 1H), 1.63 (d, J = 23.7 Hz, 3H), 1.53 (s, 3H). LC-MS (m/z) 428.2 (MH*); tR = 0.54 (Method A)
Example 23 N-(3-((2R,3R,5S)-6-amino-3,5-difluoro-2,5-dimethy1-2,3,4,5-tetrahydropyridin-2-yl)-4fluorophenyl)-5-(methoxy-d3)picolinamide (Compound 23)
Prepared from (3S,5R,6R)-6-(5-amino-2-fluoro-phenyl)-3,5-difluoro-3,6-dimethyl-piperidine-2-thione and 5-tmethoxy-d3)plcolinic acid. ’H NMR (600 MHz, DMSO) δ 10.27 (s, 1H), 8.39 (dd, J = 2.9, 0.4 Hz, 1H), 8.14 - 8.11 (m, 1H), 8.08 (dd, J ~ 7.3, 2.8 Hz, 1H), 7.87 - 7.82 (m, 1H), 7.62 (dd, J - 8.7,
2.9 Hz, 1 Η), 7.13 (dd, J = 12.0, 8.8 Hz, 1 H). 6.00 (s, 2H), 5.23 - 5.13 (m, 1 H), 2.46-2.33 (m, 2H>,
1.62 (d, J = 22.0 Hz, 3H), 1.36 (s, 3H). LC-MS (m/z) 410.1 (MH*); fe = 0.52 (Method B)
Example 24 A/-(3-((2/?13St5S)-6-amÎno-3,5-difluoro-215-dimethy1-21314,5-tetrahydropyridin-2-yl)-4fluorophenyi)-5-bromopIcolinamide (Compound 24)
Prepared from (3S,5S,6R)-6-(5-amino-2-fluoro-phenyl)-3,5-difluoro-3,6-dimethy1-piperidine-2-thione and 5-bromopicolinic acid.
1H NMR (600 MHz. DMSO) δ 10.70 (s, 1H), 8.86 (dd, J= 2.3, 0.7 Hz, 1H), 8.32 (dd, J = 8.4,2.3 Hz, 1H), 8.08 (dd, J = 8.4,0.6 Hz, 1H), 7.92-7.76 (m, 2H), 7.17 (dd, J= 11.8, 8.7 Hz, 1H), 6.17 (s, 2H), 5.19 - 5.07 (m, 1H), 2.39-2.25 (m, 1H), 2.03 -1.83 (m, 1H), 1.62 (d, J = 23.9 Hz, 3H), 1.53 (s, 3H). LC-MS (m/z) 455.1 (MH*); tR = 0.54 (Method B)
Stereochemistry
Crystals were obtained by recrystallization of 5-bromo-N-(3-((2R,3S,5S)-3,5-difluoro-2,5-dimethyl-6thioxopiperidin-2-yl)-4-fluorophenyl)picolinamide from a mixture of heptane and ethyl acetate. The structure of 5-bromo-N-(3-((2R,3S,5S)-3,5-difluoro-2,5-dimethyl-6-thioxoplperidin-2-yl)-4fluorophenyl)picolinamide was elucîdated by X-ray crystallography of said crystals. The structure shows the absolute and relative configuration of 5-bromo-N-(3-((2R,3S,5S)-3,5-difluoro-2,5dimethy!-6-thioxopiperidin-2-yl)-4-fluorophenyl)picolinamide. 5-Brûmo-N-(3-((2R,3S,5S)-3,5difluoro-2,5-dimethyl-6-thioxopiperidin-2-yl)-4-fluorophenyl)picolinamide was prepared as described in example 1 starting from (3S,5S,6R)-6-(5-amino-2-fluorophenyl)-3,5-difluoro-3,6dimethylpiperidine-2-thlone and 5-bromopIcolinic acid.
Figure 1: X-ray structure of 5-bromo-N-(3-((2R,3S,5S)-3,5-difluofO-2,5-dimethy1-6-thioxopiperidin2-yi)-4-fl<Jorophenyl)picolinamide
The absolute configurations of the exemplified compounds of the présent invention can thus be rationalized. 5-Bromo-N-(3-((2R13S,5S)-3,5-difluoro-2I5-dimethyl-6-thioxopiperidin-2-yl)-4fluorophenyljpicolinamide was prepared from (3S,5S,6R)-6-(5-amÎno-2-fluorophenyl)-3,5-difluoro3,6-dimethylplperidine-2-thione which was prepared from XIla (R4 - tert-butoxy carbonyt) as shown in Scheme 7, thus confirming the absolute configuration of XIla. As a consequense thereof, the absolute configuration of Xllb (R4 = tert-butoxy carbonyl) Is also confirmed.
Compound 24
Xllb
Scheme 8. Rationale for assignment of absolute and relative stereochemistry of the exemplified compounds. R4 = tert-butoxy carbonyl
Pharmacoloqlcal Testlnq
BACE1 binding assay
The binding assay was performed as SPA-based assay using a bîotinyiated form of human BACE1 recombinantly expressed and subsequently purified from Freestyle HEK293 cells. The binding assay was run In a 50 mM sodium acetate buffer, pH 4.5 containing 50 mM NaCI and 0.03% Tween-20 in white clear bottom 384 plates (Comlng #3653). 10 nM (final concentration) radioligand ([3H]-N-((1S,2R)-1-benzy1-3-cyclopropylamino-2-hydroxy-propyl)-5-(methanesulfonyl-methylamino)-N-((R)-1-phenyl-ethy1)-lsophthalamide) (TRQ11569 purchased from GE Healthcare) was mixed with test compound at a given concentration, 6 nM (final concentration) human BACE1 and 25 pg Streptavidin coated PVT core SPA beads (RPNQ0007, GE Healthcare Ufe Sciences) in a total volume of 40 pl. Several concentrations of each test compound were tested In the assay for IC50 détermination. The plates were Incubated for one hour at room température and counted In a Wallac Trilux counter. Total and non-specific binding were determined using buffer and 1 pM (final concentration) of the high affinity BACE1 reference Inhibitor (S)-6-[3-chloro-5-(5-prop-1-ynylpyridin-3-yl)-thiophen-2-yl]-2-imlno-3,6-dimethyl-tetrahydrO’pyrimidin-4-one, respectively. For each test compound, a IC50 value (the concentration mediating 50% Inhibition of the spécifie binding of the radioligand) was determined from concentration-response curve and used to calculate the K from the équation K|= +L/K<i), where L and IÇ are the final concentration ofthe radioligand used In the assay and the dissociation constant of the radioligand, respectively. The K<j of the radioligand was determined from saturation binding experiments.
Table 1: binding affinity of selected compounds
Compound No BACE1 Ki(nM)
1 30
2 26
3 23
4 98
5 51
6 58
7 39
8 58
9 36
10 820
11 190
12 99
13 62
14 45
15 100
16 220
17 39
18 6.8
19 20
20 21
21 4.1
22 3.6
23 81
24 4.3
BACE1 efficacy assay
The efficacy assay was performed as a FRET-based assay using a commercially available BACE1 kit (Life Technologies, P2985), 2 pl test compound at 10 pM (final concentration) and 15 pl BACE1 enzyme from the kit (final concentration 3 nM) were preincubated for 15 minutes at room température before addition of 15 pl of substrate from the kit (250 nM final concentration) and Incubated for additional 90 minutes at room température. The assay plate was subsequently read in a Pherastar (Ex540/Em590). The enzyme activity observed In presence of test compound were normalized to the enzyme activity observed In presence of buffer and 10 pM (final concentration) of the high affinity BACE1 reference Inhibitor (S)-6-[3-Chloro-5-(5-prop-1 -ynyl-pyridin-3-y!)-thiophen-2-yl]-2imino-3,6-dimethyl-tetrahydropyrimidin-4one, respectively. The efficacy of the test compounds was evaluated at 10 pM (final concentration) and defined as the percent inhibition ofthe enzyme activity using the équation %lnhibition = 100% - normalized enzyme activity In percent.
Table 2: BACE1 activity of selected compounds
Compound No BACE1 Inhibition atlOpM (%)
1 103
2 99
3 102
4 101
6 101
7 102
6 100
9 109
10 115
11 104
12 118
13 108
14 112
15 108
16 103
18 101
19 106
20 106
21 117
22 101
23 107
24 103
Assessment of AB levels In rat brain and plasma following BACE1 Inhibition. Animais.
Ail rat care and experimental procedures were approved by Lundbeck Veterinary Staff, according to
Danish législature. The rats were maintained in a barrier facility with a 12/12-h light/dark cycle and ad libitum food and water access.
Treatment of naïve Rats.
Young adult Male Sprague Dawley rats of approxlmately 250g weight were purchased from Charles
River and received 0-30 mg/kg of vehicle (10% HP betaCD + 1M MeSOi, pH 2.5) or test compounds (dissolved In vehicle) only by oral gavage (p.o). The compounds are dosed at a volume of 5ml/kg. Cohorts of 5-10 animais were established for each treatment condition.
The animais undergoing treatment were closely monitored by veterinary staff for any signs of toxicity. Monitoring parameters Included body weight, physical appearance, changes in coat appearance, occurrence of unprovoked behavior, and blunted or exaggerated responses to extemal stimuli.
Tissue collection.
AtT =180 minutes after initial dosing the animais were stunned and decapltated with a guillotine. Trunk-blood was sampled ln EDTA coated tubes after décapitation of the animal. The blood was centrifuged at 2200G at 4*C for 15 minutes and the plasma was collected and frozen at -80'C. The blood was alîquoted for Αβ ELISA and DMPK analysis. Immediately following sacrifice, the brain was extracted and splît into 2 halves. The right hemlbrains were snap frozen on dry ice and stored at -80*C. The left half was dissected; with the front forebraîn taken for Αβ ELISA and the remainder used for DMPK analysis. These samples were also snap frozen on dry Ice and stored at -80*C until use for analysis.
Tissue processing.
The cortex samples were thawed slightly on wet ice before they were homogenized with a small volume dispersing instrument (T10 basic ULTRA-TURRAX®) which was set at speed 5 for approximately 5-7 sec. The tissue was processed In a 10 times volume ofthe weight, for example 100mg of tissue was homogenized in 1000pL of Homogenization buffer. Homogenlzation buffer. 50ml Milli Q water + 50nM NaCI + 0.2% Diethylamin (DEA) + 1 tablet of Complété Protease Inhibitor cocktail + 1nM 4-(2-amlnoethyl) benzenesulfonyl fluoride hydrochloride irréversible serine protease inhibitor (AEBSF).
After homogenization 450 pL aliquots of the samples are collected into a 1.5ml Eppendorf tube and placed on wet Ice, 0.5% NP-40 (50ul) was added to ail samples and then they were incubated on ice for 30 min. After which ail samples were sonicated using an Ultrasonic homogenlzer with 20 kHz homogeneous Sound (SONOPLUS HD2070, Bandelin Electronic) 10 puise set at 12-13 % power to extract ail the Αβ species. The samples were then centrifuged (Ole Dich 157 MPRF Micro centrifuge) at 20000G for 20 minutes at 4‘C. After centrifugation 285pL of the supernatant was plpetted Into 600pL microtubes tubes and neutralized with 15pL of 1M Tris-HCL buffer.
ELISA protocol.
WAKO 294-62501 Human/Rat Abeta amylold (40) kit was used for ail ELISA analyses. 30 pL plasma samples or 30 pL of the cortex supematants generated as described above were placed in
600 pL microtubes tubes on wet Ice. To this 30 pL of 8M Urea (AppliChem A1049, 9025) are added to generate a 2-fold dilution. Both plasma and cortex supematants are incubated on Ice for 30 min. Standard rows were prepared from the standard peptide stock provided in the kit and standard diluent containing 1.6M Urea (200 pL 8M Urea + 800 pL of standard diluent) and 0.8M Urea (400pL 8M Urea + 3600pL Standard diluent). A serial 2-fold dilution of Αβ40 from 100 pmol/ml to 0 pmol/L was prepared for the assay.
After incubation with urea, ail samples were further diluted by addition of 5 times standard diluent from the Kit. This was done by adding 240 pL Standard Diluent to 60 pL sample/urea mixture, which was then mixed well. 100 pL of each diluted sample was pipetted Into designated wells of the ELISA plate in duplicates. The plate was then covered and incubated ovemight at 4’C. The following day, the ELISA kit was brought to room température before use. The Incubated plate was washed 5 times with the 20x washlng solution diluted in Milli Q water. 100 pL HRP-conjugate was applied to each well, and the plate was covered and incubâtes at 4*C for 1 hr. The wash was repeated again for 5 times. 100 pL 3,3’,5,5'-Tetramethylbenzidine (TMB) solution was applied to each well and the plate was covered and Incubated In the dark at room température for 30 minutes. 100 pL STOP-solution was next applied to each well, and the plate was read at 450 nm wavelength in a spectrophotometer (Labsystems Multiscan Ascent) within 30 min of adding the STOP-solution to the wells.
Concentration of Αβ in the samples was determined based on a standard curve generated from standards containing known concentrations of synthetic Αβ40. Those skilled In the art will appreciate that diethylamine (DEA) and urea extractions will release soluble Αβ, and insoluble Αβ respectively. Since the ELISA kit is validated and widely used, it Is accepted that as long as the treatment conditions and assay conditions are the same for each compound tested, then the assay should yield consistent robust data for the compounds tested and produce minimal discrepandes.
Data analysis
To détermine the concentration of Αβ40 In the samples, the interpolated values ofthe samples loaded on plates are multiplied by 20 to account for the dilutions made when the volumes of DEA, urea and neutralization solution were added up. Values are calculated as percentage change in Αβ40 compared to vehicle treated animais.
Compound 4 was admistered at doses of 10 mg/kg p.o. and brain and plasma samples were collected at 3 hours post dose and the following exposures were measured as described above.
Bloanalysls of brain and plasma samples
TC was determined In plasma and brain homogenate using UltraPerformance LC® (UPLC®) chromatography followed bytandem-MS (MS/MS) détection.
Apparatus:
Tecan Genesis RSP 200; Biomek NXP, Beckman Coulter; Sigma 4K15 centrifuge; Acquity UPLC, Waters; Sdex API4000 TQ, Applied Biosystems; MS software: Analyst version 1.4.1
Chemisais
Acetonitrile, HPLC-grade, Fluka, No. 34967N; Methanol, HPLC-grade, Slgma-Aldrich, Lot 9003S; Formic add, HPLC-grade, Riede!-de Haën, Lot 51660; Purified water, Millipore Synergy UV Sample préparation
Brain homogenate was prepared by homogenlzing the brain 1:4 (v/v) with waten2-propanol:DMSO (50:30:20 v/v/v) followed bycentrifugation and collection ofthe supernatant. Calibration standards and QC samples were prepared using a Hamilton robot. 150 pL of ISTD in acetonitrile (1 ng/mL ISTD) was added to 25 pL of calibration standards, QC samples and test samples (plasma and brain homogenate) using a Biomek robot. After centrifugation (6200 g, 4 ’C, 20 min) 100 pL supernatant from each sample was transferred to a new plate and mixed with 100 pL water with 0.1 % formic add using a Biomek robot (method file InVivo transfer). After a quick centrifugation (6200 g, 4 ’C, 5 min) the samples were placed In the auto-sampler.
UPLC-MS/MS analysis
MS/MS détection was done with an Applied Biosystems Sdex API 4000 instrument in positive-lon electrospray ionisation mode. TC and ISTD were detected at a parent > daughter mass to charge ratio (m/z). Nitrogen was used for the nebulizer and collision gases. The peak area correlated linearly with the plasma and brain concentration of the analytes in the range of 1,00 -1000 ng/mL plasma and 5.00 - 5000 ng/g brain (corrected for dilution). If the plasma/braln sample drug concentration was above 1000 ng/mL or 5000 ng/g, the sample was diluted appropriately in blank plasma/blank brain homogenate before analysis.
Chromatographie system
Analytical columns:
Waters Acquity UPLC HSS C18 SB (pH 2-8) 1.8 pm, 2.1x30mm.
Mobile phase A: 0.1 % aq. formic add or 0.1 % aq. ammonium hydroxide
Mobile phase B: Acetonitrile with 0.1 % aq. formic add or 0.1 % aq. ammonium hydroxide.
Weak wash: Methanol
Strong wash: Acetonitrile/lsopropanol/formlc add (50/50/2 v/v/v)
Flow: 0.6 mL/mîn
Run time: 3 min.
To waste: 0-0.5 min Température: 40*C Gradient:
Time (min) %A %B
5 0 98 2
0.01 98 2
1.5 5 95
2 5 95
2.2 98 2
10 3 98 2
Table 3: Results for compound 3
Dose (mg/kg) Exp (ng/g) Brain/Plasma ratio Ap40 réduction (%)
Brain Rat Plasma Rat 10 671 489 1.4 35 24
Brain Rat Plasma Rat 30 1510 1826 0.83 61 53
Table 4: Results for compound 19
Dose (mg/kg) Exp (ng/g) Brain/Plasma ratio Αβ40 réduction (%)
Brain Rat Plasma Rat 10 1025 473 2.2 56 49
Brain Rat Plasma Rat 30 2772 1198 2.3 66 53
Table 5: Results for compound 20
Dose (mg/kg) Exp (ng/g) Brain/Plasma ratio Αβ40 réduction (%)
Brain Rat 3 610 2.2 52
Plasma Rat 272 64
As shown In tables 3,4 and 5 compounds of the présent invention are able to penetrate the blood brain barrier and show efficacy in the CNS.
MDCK-MDR1 assay
The permeability of the test compounds was assessed In MDCK-MDR1 cells that were cultured to confluency (4-6 days) In a 96 transwell plate. Test compounds were diluted with the transport buffer (HBSS + 1% BSA) to a concentration of 0.5 pM and applied to the apical or basolateral side of the 10 cell monolayer. Perméation of the test compounds from A to B direction or B to A direction was determined in triplicate over a 60-minute incubation time at 37*C and 5% CO2 with a relative humidity of 95%. Test compounds were quantified by LC-MS/MS analysis based on the peaks area ratios of analyte/IS in both the receiver and donor wells of the transwell plate.
The apparent permeability coefficient Papp (cm/s) was calculated using the équation:
Papp = (dCr/dt) x Vr / (A x CO)
Where dCr/dt Is the cumulative concentration of compound in the receiver chamber as a function of time (pM/s); Vr Is the solution volume in the receiver chamber (0.05 mL on the apical side: 0.25 mL on the basolateral side); A is the surface area for the transport, i.e. 0.0804 cm2 for the area of the monolayer; C0 is the initial concentration in the donor chamber (pM).
Compounds are dassified Pgp substrates when efflux ratio (Papp BA / Papp AB) Is £ 2.
Table 5: BACE1 activity of selected compounds
Compound MDCK- MDR1 efflux ratio
1 1.09
2 0.79
3 0.96
4 1.17
5 1.53
6 1.1
7 5.67
8 0.95
9 1.31
13 11.7
14 15.76
15 2.07
16 1.6
17 0.45
18 1.24
19 0.79
20 0.85
21 1.15
22 0.52
23 0.95
As shown in tables 5, the majority of the exemplified compounds of the présent Invention hâve MDCK- MDR1 efflux ratios below 2 and are thus likely to be able to cross the blood brain barrier (E Kems, L Di, Drug-like Properties: Concepts, Structure Design and Methods (2008) Elsevïer).

Claims (16)

  1. CLAIMS wherein Ar Is selected from the group consisting of phenyl, pyridyl, pyrimidyl, pyrazinyl, imldazolyl, pyrazolyl, thîazolyt, oxazolyl, isoxazolyî, and where the Ar is optionally substituted with one or more substituent selected from halogen, CN, CrCe alkyl, Cj-Ce alkenyl, CrC# alkynyl, CrCe fluoroalkyl or CrCe alkoxy; and
    R1 Is one or more hydrogen, halogen, C1-C3 fluoroalkyl or C1-C3 alkyl;
    or a pharmaceutically acceptable sait thereof.
  2. 2.
    A compound according to daim 1, wherein the compound is of formula la or lb
    Formula lb
    Formula la or a pharmaceutically acceptable sait thereof.
  3. 3. The compound according to daim 1 or 2, wherein R1 is F or H.
  4. 4. The compound according to anyone of daims 1-3, wherein Ar is optionally substituted with one or more F, Cl, Br, CN, CrC3 alkyl, CrC3 fluoroalkyl or C,-C3 alkoxy.
  5. 5. - The compound according to anyone of daims 1-4, wherein Ar is optionally substituted phenyl.
  6. 6. The compound of anyone of claims 1 -4, wherein Ar is optionally substituted pyridyl.
    I I
  7. 7. The compound according to anyone of daims 1 -4, wherein Ar Is optionally substituted pyrazinyl.
  8. 8. The compound according to anyone of daims 1 -4, wherein Ar Is optionally substituted Imidazolyl.
  9. 9. The compound according to anyone of daims 1-4, wherein Ar Is optionally substituted pyrazolyl.
  10. 10. The compound according to anyone of daims 1-4, wherein Ar Is optionally substituted oxazolyl.
  11. 11. The compound according to anyone of daims 1-4, wherein Ar Is optionally substituted thiazoiyl.
  12. 12. The compound according to daim 1, wherein the compound Is selected from the group consisting of:
    /7-(3-((2/7,35,5S)-6-amino-3,5-difluoro-2,5-dimethyl-2,3,4,5-tetrahydropyridin-2-yl)-
    4-fluorophenyl)-5-fluoropicolinamide, /7-(3-((2/7,3S,5S)-6-amino-3,5-dinuoro-2,5-dimethyl-2,3,4,5-tetrahydropyridin-2-yl)-
    4-fl uorophe nyl)-5-methoxypyrazine-2-carboxa mide, /7-(3-((2/7,3Sf5S)-6-amlno-3,5-difluoro-2,5-dimethyl-2,3,4,5-tetrahydropyridin-2-yl)-
    4-fluorophenyl)-5-niethoxyplco1inamlde, /7-(3-((2/7,3S,5R)-6-amino-3>5-difluoro-2,5-dimethyl-2,3,4,5-tetrahydropyridin-2-yl)-
    4-fluorophenyl)-5-fluoroplcolinamide,
    N-(3-((2/7,3S,5/7)-6-amlno-3,5-difluoro-2,5-dÎmethyl-213,4,5-tetrahydropyridin-2-yl)-
    4-fluorophenyl)-5-methoxypyrazine-2-carboxamlde, /7-(3-((2/7,3S,5/?)-6-amlno-3,5-difluoro-2,5-dimethyl-2,3,4,5-tetrahydropyridin-2-yl)-
    4-fluorophenyl)-2-methyloxazole-4-carboxamlde, N-(3-((2/7,3S,5/7)-6-amÎno-3,5-difIuoro-2,5-dimethyl-2,3,4,5-tetrahydropyridin-2-yl)-
    4-fluorophenyl)-5-methoxypicolinamide, /7-(3-((2/7,3S,5/?)-6-amino-3,5-difluoro-2,5-dimethyl-2,3,4,5-tetrahydropyridin-2-yl)-4fluorophenyl)-5-(methoxy-</3)picolinamlde,
    AF(3-((2R,3S,5R)-6-amlno-3,5-difluoro-2,5-dimethyl-2,3,4,54etrahydropyrÎdin-2-yt)-4fluorophenyl)-5-chloroplcolinamlde,
    N-(3-((2R,3S,5R)-6-amino-3,5^iifluoro-215-dimethyl-2,3,415-tetrahydropyridin-2-yl)-4fluorophenyl)-1 -methyl-1 H-lmidazole-2-carboxamlde,
    N-(3-((2R,3S, 5R)-6-amlno-3,5-difluoro-2,5-dimethyl-2,3,4,5-tetrahydropyridin-2-yl)-4fluorophenyl)-5-(trifluoromethyl)pyrazine-2-carboxamÎde,
    N-(3-((2R,3S,5R)-6-amino-3,5-dinuoro-2,5-dimethyl-213,415-tetrahydropyridin-2-yl)-4fluorophenyl)-4-methylthiazole-2-carboxamidel
    N-{3-((2R13S15R)-6-amlno-3,5-dîfluorb-2,5-dimethyl-2,3,4,5-tetrahydropyridin-2-yl)-4fluorophenyl)-2-(difluoromethy!)oxazole-4-carboxamide,
    N-(3-((2R,3S,5R)-6-amlno-3>5-difluoro-2,5-dimethy!-2,3,4,5-tetrahydropyridin-2-yl}-4fl uoropheny!)-1 -fdifluorom e thyl )-1 H-pyrazole-3-carboxa mlde,
    N-(3-((2R,3S15R)-6-amino-3,5-difluoro-215-dimethyl-21314,5-tetrahydropyridin-2-ylHfluorophenyl)-5’(difluoromethyl)pyrazine-2-carboxamide, /7-(3-((2^35,5R)-6-amino-3,5-difluoro-2,5-dÎmethyl-2,3,4,5-tetrahydropyridin-2-yl)-4fluorophenyl)-4-chlorobenzamide, /7-(3-((2R,3SI5R)-6-amino-3,5-difluoro-215-dimethyt-213I4,5-tetrahydropyridîn-2-yt)-4fluorophenylJ-S-cyanopicolinamlde, /7-(3-((2R,3S,5R)-6-amlno-3,5-difluoro-215-dimethyl-2,314,5-tetrahydropyridin-2-yl)-4,5dîfluorophenyl)-5-(methoxy-t/3)picolinamlde,
    N-(3-((2R13S15S)-6-amlno-3,5-difluoro-2,5-dirnethy!-2,3,4,5-tetrahydropyridin-2-yl)-4fluorophenyl)-5-(methoxy-d3)plcolinamide,
    N-(3-((2R,3S15S)-6-amino-3,5-dinuoro-2,5-dimethyl-2,3,4,5-tetrahydropyridÎn-2-yl)-4fluoropheny1)-5-(methoxy-d3)pyrazine-2-carboxamlde,
    N-(3-((2R,3S, 5S)-6-amino-3,5-difluoro-2,5-dimethy!-2,3,4,5-tetrahydropyridin-2-yl)-4fluorophenyl)-5-cyano-3-methylplcolinamide,
    N-(3-((2R,3S,5S)-6-amÎno-315-difIuoro-2I5-dimethyl-2l3,415-tetrahydropyridin-2-yl)-4.5difluoropheny1)-5-(methoxy-d3)plcolinamide, /7-(3-((2R13R,5S)-6-amino-3,5-difluoro-2,5-dimethyl-2,3,4,5-tetrahydropyridin-2-yl)-4ÎluorophenylJ-S-imethoxy-d'jjJpIcolînamlde, /7-(3-((2R,3S,5S)-6-amlno-3,5-difluoro-2,5-dimethyl-2,3,415-tetrahydropyridin-2-yl)-4fluorophenyl)-5-bromoplcolinamlde or a pharmaceutically acceptable sait thereof.
  13. 13. A pharmaceutical composition comprising the compound according to anyone of claims 112 or a pharmaceutically acceptable sait thereof and a pharmaceutically acceptable carrier.
  14. 14. The use of a compound according to anyone of claims 1-12 for the manufacture of a médicament for treating a disease selected from Alzheimer’s disease (familial or sporadic), preclinical Alzheimer's disease, prodromal Alzheimer’s disease, mild cognitive impairment, Down’s syndrome and cérébral amyloid angiopathy.
  15. 15. A compound according to anyone of claims 1-12 for use In therapy.
  16. 16. A compound according to anyone of claims 1-12 for use In a method for the treatment of a disease selected from Alzheimer’s disease (familial or sporadic), preclinical Alzheimer’s disease, prodromal Alzheimer’s disease, mild cognitive impairment, Down’s syndrome and cérébral amyloid angiopathy.
OA1201700164 2014-11-10 2015-11-09 2-amino-3,5-difluoro-3,6-dimethyl-6-phenyl3,4,5,6-tetrahydropyridines as bacel inhibitors for treating Alzheimer's disease. OA18264A (en)

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